1S3MA

Structural and functional characterization of a novel archaeal phosphodiesterase
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphodiesterase
molecule keywords Hypothetical protein MJ0936
publication title Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 49
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1s3mA00
2QJCA 3PSOA 3P71C 4V0VA 3RL3A 3HVQA 4DT2A 3N5UA 3C9FA 4G9JA 1OIEA 2Z06A 1S3MA 1TCOA 5F3WA 1USHA 4UWQA 4H2BA 4TUGA 4H1SA 4ZVZA 4UT2A 1JK7A 1QHWA 2NXFA 4V0WA 3ZTVA 3QFMA 3QFNA 1T71A 3H63A 3ICFA 1XZWA 3H60A 4H1YP 3QFKA 2Z1AA 2R17A 4V0XA 3H69A 1IT6A 3DSCA 1WARA 4H2FA 2JOGA 1HO5A 1M63A 2QFRA 1W24A 3JYFA 4WWLA 3RL5A 5JJTA 5J28A 3FGAC 4YKEA 2YVTA 4O24A 3H67A 3IVDA 3K7VC 4O5GA 2IE3C 2ZBMA 3E7AA 3EGHA 1HP1A 4FBWA 4XPNA 5JPEA 2NYMC 4M0VA 3C5WC 1S3LA 3H64A 4JA9A 3QG5C 4O43A 4OR9A 2AHDA 4KKZA 5HPEA 1FJMA 2HYPA 3IB7A 2HY1A 4TUIA 2DFJA 5EQVA 4IYPC 2O8AA 4F0ZA 3EGGA 3QFOA 3CK2A 4I5NC 4ORBA 1UF3A 3H68A 3THOB 3GVEA 1OI8A 3H62B 1SU1A 1WAO1 2BCDA 1MF8A 2Z72A 2Q8UA 3AV0A 4H2IA 3V4YA 4FCXA 3T1IA 2WDEA 4I5LC 1HPUA 3RL4A 4LU9A 3PSNA 3DW8C 4ZX2A 3ZU0A 4ORAA 4UT3B 5C1VA 1Z2XA 4Q7FA 2GJUA 2WDFA 2P6BA 2QFPA 3AUZA 4NZVA 4H2GA 3IB8A 5GTUA 4ORCA 2KKNA 3THNA 2IE4C 1OIDA 4HD0A 3RQZA 1T70A 1U32A 4IL1A 1II7A 4DSYA 4LTYA 1QFCA 5IOHA 4MOYA 4B2OA 1Z2WA 4LACC 3IVEA 2NPPC 5INBA 2CV9A 3K7WC 4KBPA 1KBPA 2BQ8X 3TGHA 2HYOA 4O4KA 4FBKA 3H66A 4UT3A 5JPFA 3KBPA 4MOVA 2O8GA 3H61A 2USHA 2NYLC 4JA7A 2XMOA 3DSDA 1S3NA 2A22A 4J6OA 1NNWA 1S8EA 3E7BA 1G5BA 5DNYA 4MP0A 1S70A 2WDCA 4DHLA 4FBQA 5B8IA 1AUIA 3LL8A 1V73A 1UTEA 2BDXA 1S95A 2WDDA 2IAEC 1XM7A
chains in the Genus database with same CATH superfamily
2QJCA 3PSOA 3P71C 4V0VA 3RL3A 3HVQA 4DT2A 3N5UA 3C9FA 4G9JA 1OIEA 2Z06A 1S3MA 1TCOA 5F3WA 1USHA 4UWQA 4H2BA 4TUGA 4H1SA 4ZVZA 4UT2A 1JK7A 1QHWA 2NXFA 4V0WA 3ZTVA 3QFMA 3QFNA 1T71A 3H63A 3ICFA 1XZWA 3H60A 4H1YP 3QFKA 2Z1AA 2R17A 4V0XA 3H69A 1IT6A 3DSCA 1WARA 4H2FA 2JOGA 1HO5A 1M63A 2QFRA 1W24A 3JYFA 4WWLA 3RL5A 5JJTA 5J28A 3FGAC 4YKEA 2YVTA 4O24A 3H67A 3IVDA 3K7VC 4O5GA 2IE3C 2ZBMA 3D03A 3E7AA 3EGHA 1HP1A 4FBWA 4XPNA 5JPEA 2NYMC 4M0VA 3C5WC 1S3LA 3H64A 4JA9A 3QG5C 4O43A 4OR9A 2AHDA 4KKZA 5HPEA 1FJMA 2HYPA 3IB7A 2DXNA 2HY1A 4TUIA 2DFJA 5EQVA 4IYPC 2O8AA 4F0ZA 3EGGA 3QFOA 3CK2A 4I5NC 4ORBA 1UF3A 3H68A 3THOB 3GVEA 1OI8A 3H62B 1SU1A 1WAO1 2BCDA 1MF8A 2ZO9B 2Z72A 2Q8UA 3AV0A 4H2IA 3V4YA 4FCXA 3T1IA 2WDEA 4I5LC 1HPUA 3RL4A 4LU9A 3PSNA 3DW8C 4ZX2A 3ZU0A 4ORAA 4UT3B 5C1VA 1Z2XA 4Q7FA 2GJUA 2WDFA 2P6BA 2QFPA 3AUZA 4NZVA 4H2GA 3IB8A 5GTUA 4ORCA 2KKNA 3THNA 2IE4C 1OIDA 4HD0A 3RQZA 1T70A 1U32A 4IL1A 1II7A 4DSYA 4LTYA 1QFCA 5IOHA 4MOYA 4B2OA 1Z2WA 4LACC 3IVEA 2NPPC 2DXLA 5INBA 2CV9A 3K7WC 4KBPA 1KBPA 2BQ8X 3TGHA 2HYOA 4O4KA 4FBKA 3H66A 4UT3A 5JPFA 3KBPA 3E0JA 4MOVA 2O8GA 3H61A 2USHA 2NYLC 4JA7A 2XMOA 3DSDA 1S3NA 2A22A 2ZOAA 4J6OA 1NNWA 1S8EA 2YEQA 3E7BA 1G5BA 5DNYA 4MP0A 1S70A 2WDCA 4DHLA 4FBQA 5B8IA 1AUIA 3LL8A 1V73A 3FLOA 1UTEA 2BDXA 1S95A 2WDDA 2IAEC 1XM7A
chains in the Genus database with same CATH topology
2QJCA 3PSOA 3P71C 4V0VA 3RL3A 3HVQA 4DT2A 3N5UA 3C9FA 4G9JA 1OIEA 2Z06A 1S3MA 1TCOA 5F3WA 1USHA 4UWQA 4H2BA 4TUGA 4H1SA 4ZVZA 4UT2A 1JK7A 1QHWA 2NXFA 4V0WA 3ZTVA 3QFMA 3QFNA 1T71A 3H63A 3ICFA 1XZWA 3H60A 4H1YP 3QFKA 2Z1AA 2R17A 4V0XA 3H69A 1IT6A 3DSCA 1WARA 4H2FA 2JOGA 1HO5A 1M63A 2QFRA 1W24A 3JYFA 4WWLA 3RL5A 5JJTA 5J28A 3FGAC 4YKEA 2YVTA 4O24A 3H67A 3IVDA 3K7VC 4O5GA 2IE3C 2ZBMA 3D03A 3E7AA 3EGHA 1HP1A 4FBWA 4XPNA 5JPEA 2NYMC 4M0VA 3C5WC 1S3LA 3H64A 4JA9A 3QG5C 4O43A 4OR9A 2AHDA 4KKZA 5HPEA 1FJMA 2HYPA 3IB7A 2DXNA 2HY1A 4TUIA 2DFJA 5EQVA 4IYPC 2O8AA 4F0ZA 3EGGA 3QFOA 3CK2A 4I5NC 4ORBA 1UF3A 3H68A 3THOB 3GVEA 1OI8A 3H62B 1SU1A 1WAO1 2BCDA 1MF8A 2ZO9B 2Z72A 2Q8UA 3AV0A 4H2IA 3V4YA 4FCXA 3T1IA 2WDEA 4I5LC 1HPUA 3RL4A 4LU9A 3PSNA 3DW8C 4ZX2A 3ZU0A 4ORAA 4UT3B 5C1VA 1Z2XA 4Q7FA 2GJUA 2WDFA 2P6BA 2QFPA 3AUZA 4NZVA 4H2GA 3IB8A 5GTUA 4ORCA 2KKNA 3THNA 2IE4C 1OIDA 4HD0A 3RQZA 1T70A 1U32A 4IL1A 1II7A 4DSYA 4LTYA 1QFCA 5IOHA 4MOYA 4B2OA 1Z2WA 4LACC 3IVEA 2NPPC 2DXLA 5INBA 2CV9A 3K7WC 4KBPA 1KBPA 2BQ8X 3TGHA 2HYOA 4O4KA 4FBKA 3H66A 4UT3A 5JPFA 3KBPA 3E0JA 4MOVA 2O8GA 3H61A 2USHA 2NYLC 4JA7A 2XMOA 3DSDA 1S3NA 2A22A 2ZOAA 4J6OA 1NNWA 1S8EA 2YEQA 3E7BA 1G5BA 5DNYA 4MP0A 1S70A 2WDCA 4DHLA 4FBQA 5B8IA 1AUIA 3LL8A 1V73A 3FLOA 1UTEA 2BDXA 1S95A 2WDDA 2IAEC 1XM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJC A;  3PSO A;  3P71 C;  4V0V A;  3RL3 A;  3HVQ A;  4DT2 A;  3N5U A;  3C9F A;  4G9J A;  1OIE A;  2Z06 A;  1S3M A;  1TCO A;  5F3W A;  1USH A;  4UWQ A;  4H2B A;  4TUG A;  4H1S A;  4ZVZ A;  4UT2 A;  1JK7 A;  1QHW A;  2NXF A;  4V0W A;  3ZTV A;  3QFM A;  3QFN A;  1T71 A;  3H63 A;  3ICF A;  1XZW A;  3H60 A;  4H1Y P;  3QFK A;  2Z1A A;  2R17 A;  4V0X A;  3H69 A;  1IT6 A;  3DSC A;  1WAR A;  4H2F A;  2JOG A;  1HO5 A;  1M63 A;  2QFR A;  1W24 A;  3JYF A;  4WWL A;  3RL5 A;  5JJT A;  5J28 A;  3FGA C;  4YKE A;  2YVT A;  4O24 A;  3H67 A;  3IVD A;  3K7V C;  4O5G A;  2IE3 C;  2ZBM A;  3E7A A;  3EGH A;  1HP1 A;  4FBW A;  4XPN A;  5JPE A;  2NYM C;  4M0V A;  3C5W C;  1S3L A;  3H64 A;  4JA9 A;  3QG5 C;  4O43 A;  4OR9 A;  2AHD A;  4KKZ A;  5HPE A;  1FJM A;  2HYP A;  3IB7 A;  2HY1 A;  4TUI A;  2DFJ A;  5EQV A;  4IYP C;  2O8A A;  4F0Z A;  3EGG A;  3QFO A;  3CK2 A;  4I5N C;  4ORB A;  1UF3 A;  3H68 A;  3THO B;  3GVE A;  1OI8 A;  3H62 B;  1SU1 A;  1WAO 1;  2BCD A;  1MF8 A;  2Z72 A;  2Q8U A;  3AV0 A;  4H2I A;  3V4Y A;  4FCX A;  3T1I A;  2WDE A;  4I5L C;  1HPU A;  3RL4 A;  4LU9 A;  3PSN A;  3DW8 C;  4ZX2 A;  3ZU0 A;  4ORA A;  4UT3 B;  5C1V A;  1Z2X A;  4Q7F A;  2GJU A;  2WDF A;  2P6B A;  2QFP A;  3AUZ A;  4NZV A;  4H2G A;  3IB8 A;  5GTU A;  4ORC A;  2KKN A;  3THN A;  2IE4 C;  1OID A;  4HD0 A;  3RQZ A;  1T70 A;  1U32 A;  4IL1 A;  1II7 A;  4DSY A;  4LTY A;  1QFC A;  5IOH A;  4MOY A;  4B2O A;  1Z2W A;  4LAC C;  3IVE A;  2NPP C;  5INB A;  2CV9 A;  3K7W C;  4KBP A;  1KBP A;  2BQ8 X;  3TGH A;  2HYO A;  4O4K A;  4FBK A;  3H66 A;  4UT3 A;  5JPF A;  3KBP A;  4MOV A;  2O8G A;  3H61 A;  2USH A;  2NYL C;  4JA7 A;  2XMO A;  3DSD A;  1S3N A;  2A22 A;  4J6O A;  1NNW A;  1S8E A;  3E7B A;  1G5B A;  5DNY A;  4MP0 A;  1S70 A;  2WDC A;  4DHL A;  4FBQ A;  5B8I A;  1AUI A;  3LL8 A;  1V73 A;  1UTE A;  2BDX A;  1S95 A;  2WDD A;  2IAE C;  1XM7 A; 
#chains in the Genus database with same CATH topology
 2QJC A;  3PSO A;  3P71 C;  4V0V A;  3RL3 A;  3HVQ A;  4DT2 A;  3N5U A;  3C9F A;  4G9J A;  1OIE A;  2Z06 A;  1S3M A;  1TCO A;  5F3W A;  1USH A;  4UWQ A;  4H2B A;  4TUG A;  4H1S A;  4ZVZ A;  4UT2 A;  1JK7 A;  1QHW A;  2NXF A;  4V0W A;  3ZTV A;  3QFM A;  3QFN A;  1T71 A;  3H63 A;  3ICF A;  1XZW A;  3H60 A;  4H1Y P;  3QFK A;  2Z1A A;  2R17 A;  4V0X A;  3H69 A;  1IT6 A;  3DSC A;  1WAR A;  4H2F A;  2JOG A;  1HO5 A;  1M63 A;  2QFR A;  1W24 A;  3JYF A;  4WWL A;  3RL5 A;  5JJT A;  5J28 A;  3FGA C;  4YKE A;  2YVT A;  4O24 A;  3H67 A;  3IVD A;  3K7V C;  4O5G A;  2IE3 C;  2ZBM A;  3D03 A;  3E7A A;  3EGH A;  1HP1 A;  4FBW A;  4XPN A;  5JPE A;  2NYM C;  4M0V A;  3C5W C;  1S3L A;  3H64 A;  4JA9 A;  3QG5 C;  4O43 A;  4OR9 A;  2AHD A;  4KKZ A;  5HPE A;  1FJM A;  2HYP A;  3IB7 A;  2DXN A;  2HY1 A;  4TUI A;  2DFJ A;  5EQV A;  4IYP C;  2O8A A;  4F0Z A;  3EGG A;  3QFO A;  3CK2 A;  4I5N C;  4ORB A;  1UF3 A;  3H68 A;  3THO B;  3GVE A;  1OI8 A;  3H62 B;  1SU1 A;  1WAO 1;  2BCD A;  1MF8 A;  2ZO9 B;  2Z72 A;  2Q8U A;  3AV0 A;  4H2I A;  3V4Y A;  4FCX A;  3T1I A;  2WDE A;  4I5L C;  1HPU A;  3RL4 A;  4LU9 A;  3PSN A;  3DW8 C;  4ZX2 A;  3ZU0 A;  4ORA A;  4UT3 B;  5C1V A;  1Z2X A;  4Q7F A;  2GJU A;  2WDF A;  2P6B A;  2QFP A;  3AUZ A;  4NZV A;  4H2G A;  3IB8 A;  5GTU A;  4ORC A;  2KKN A;  3THN A;  2IE4 C;  1OID A;  4HD0 A;  3RQZ A;  1T70 A;  1U32 A;  4IL1 A;  1II7 A;  4DSY A;  4LTY A;  1QFC A;  5IOH A;  4MOY A;  4B2O A;  1Z2W A;  4LAC C;  3IVE A;  2NPP C;  2DXL A;  5INB A;  2CV9 A;  3K7W C;  4KBP A;  1KBP A;  2BQ8 X;  3TGH A;  2HYO A;  4O4K A;  4FBK A;  3H66 A;  4UT3 A;  5JPF A;  3KBP A;  3E0J A;  4MOV A;  2O8G A;  3H61 A;  2USH A;  2NYL C;  4JA7 A;  2XMO A;  3DSD A;  1S3N A;  2A22 A;  2ZOA A;  4J6O A;  1NNW A;  1S8E A;  2YEQ A;  3E7B A;  1G5B A;  5DNY A;  4MP0 A;  1S70 A;  2WDC A;  4DHL A;  4FBQ A;  5B8I A;  1AUI A;  3LL8 A;  1V73 A;  3FLO A;  1UTE A;  2BDX A;  1S95 A;  2WDD A;  2IAE C;  1XM7 A; 
#chains in the Genus database with same CATH homology
 2QJC A;  3PSO A;  3P71 C;  4V0V A;  3RL3 A;  3HVQ A;  4DT2 A;  3N5U A;  3C9F A;  4G9J A;  1OIE A;  2Z06 A;  1S3M A;  1TCO A;  5F3W A;  1USH A;  4UWQ A;  4H2B A;  4TUG A;  4H1S A;  4ZVZ A;  4UT2 A;  1JK7 A;  1QHW A;  2NXF A;  4V0W A;  3ZTV A;  3QFM A;  3QFN A;  1T71 A;  3H63 A;  3ICF A;  1XZW A;  3H60 A;  4H1Y P;  3QFK A;  2Z1A A;  2R17 A;  4V0X A;  3H69 A;  1IT6 A;  3DSC A;  1WAR A;  4H2F A;  2JOG A;  1HO5 A;  1M63 A;  2QFR A;  1W24 A;  3JYF A;  4WWL A;  3RL5 A;  5JJT A;  5J28 A;  3FGA C;  4YKE A;  2YVT A;  4O24 A;  3H67 A;  3IVD A;  3K7V C;  4O5G A;  2IE3 C;  2ZBM A;  3D03 A;  3E7A A;  3EGH A;  1HP1 A;  4FBW A;  4XPN A;  5JPE A;  2NYM C;  4M0V A;  3C5W C;  1S3L A;  3H64 A;  4JA9 A;  3QG5 C;  4O43 A;  4OR9 A;  2AHD A;  4KKZ A;  5HPE A;  1FJM A;  2HYP A;  3IB7 A;  2DXN A;  2HY1 A;  4TUI A;  2DFJ A;  5EQV A;  4IYP C;  2O8A A;  4F0Z A;  3EGG A;  3QFO A;  3CK2 A;  4I5N C;  4ORB A;  1UF3 A;  3H68 A;  3THO B;  3GVE A;  1OI8 A;  3H62 B;  1SU1 A;  1WAO 1;  2BCD A;  1MF8 A;  2ZO9 B;  2Z72 A;  2Q8U A;  3AV0 A;  4H2I A;  3V4Y A;  4FCX A;  3T1I A;  2WDE A;  4I5L C;  1HPU A;  3RL4 A;  4LU9 A;  3PSN A;  3DW8 C;  4ZX2 A;  3ZU0 A;  4ORA A;  4UT3 B;  5C1V A;  1Z2X A;  4Q7F A;  2GJU A;  2WDF A;  2P6B A;  2QFP A;  3AUZ A;  4NZV A;  4H2G A;  3IB8 A;  5GTU A;  4ORC A;  2KKN A;  3THN A;  2IE4 C;  1OID A;  4HD0 A;  3RQZ A;  1T70 A;  1U32 A;  4IL1 A;  1II7 A;  4DSY A;  4LTY A;  1QFC A;  5IOH A;  4MOY A;  4B2O A;  1Z2W A;  4LAC C;  3IVE A;  2NPP C;  2DXL A;  5INB A;  2CV9 A;  3K7W C;  4KBP A;  1KBP A;  2BQ8 X;  3TGH A;  2HYO A;  4O4K A;  4FBK A;  3H66 A;  4UT3 A;  5JPF A;  3KBP A;  3E0J A;  4MOV A;  2O8G A;  3H61 A;  2USH A;  2NYL C;  4JA7 A;  2XMO A;  3DSD A;  1S3N A;  2A22 A;  2ZOA A;  4J6O A;  1NNW A;  1S8E A;  2YEQ A;  3E7B A;  1G5B A;  5DNY A;  4MP0 A;  1S70 A;  2WDC A;  4DHL A;  4FBQ A;  5B8I A;  1AUI A;  3LL8 A;  1V73 A;  3FLO A;  1UTE A;  2BDX A;  1S95 A;  2WDD A;  2IAE C;  1XM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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