2USHA

5'-nucleotidase from e. coli
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
524
structure length
506
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 5'-NUCLEOTIDASE
publication title X-ray structure of the Escherichia coli periplasmic 5'-nucleotidase containing a dimetal catalytic site.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 175
structure length 506
sequence length 524
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 1998-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2ushA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2ushA02
1G5BA 3THOB 4FCXA 2NPPC 4LACC 1MF8A 5IOHA 3GVEA 3H66A 1S3NA 4MP0A 5JPFA 3DSDA 1U32A 4B2OA 3QFMA 4O24A 1TCOA 2O8GA 1IT6A 4ORBA 4LU9A 4Q7FA 1M63A 4HD0A 3DW8C 4NZVA 3QFOA 3RL3A 3E7AA 3H67A 4O5GA 5EQVA 4V0XA 2YVTA 1S3MA 4H2GA 4UT2A 1T70A 2WDEA 5INBA 4H2IA 3ZU0A 2Z1AA 4H1SA 1T71A 1Z2WA 4YKEA 1OIDA 2WDFA 1UF3A 2GJUA 2Z06A 2HY1A 3PSNA 4O43A 3QG5C 4JA7A 3PSOA 4I5LC 5B8IA 4I5NC 2HYOA 2BDXA 2AHDA 3ZTVA 4FBKA 3CK2A 1UTEA 1HO5A 3T1IA 2XMOA 4MOYA 4TUIA 5HPEA 3QFKA 4O4KA 3TGHA 3EGGA 3H62B 3K7WC 1NNWA 1WAO1 1HP1A 3THNA 4DSYA 4ORAA 1KBPA 4V0VA 4FBWA 4IL1A 4F0ZA 5JPEA 1QFCA 2QJCA 4ORCA 2Q8UA 4KBPA 4UT3B 3H68A 2NXFA 1JK7A 3H60A 2USHA 3IB7A 2R17A 3LL8A 5J28A 4FBQA 2CV9A 2P6BA 4M0VA 1AUIA 3IVEA 3RQZA 4H2BA 1HPUA 2KKNA 2Z72A 4KKZA 2DFJA 4MOVA 5DNYA 4DHLA 1S8EA 1QHWA 3C5WC 1Z2XA 3HVQA 4TUGA 1II7A 2BCDA 2IAEC 3V4YA 1S95A 2IE3C 2JOGA 2QFPA 4XPNA 1S70A 3EGHA 2QFRA 1XM7A 1OI8A 4V0WA 3DSCA 3E7BA 2HYPA 1WARA 3RL4A 1W24A 3JYFA 2WDCA 4UWQA 4UT3A 2A22A 3H61A 2O8AA 1SU1A 3KBPA 3IVDA 1USHA 3P71C 5C1VA 3IB8A 2NYMC 4JA9A 2IE4C 4ZX2A 3N5UA 3K7VC 4G9JA 3C9FA 1OIEA 4IYPC 4J6OA 3RL5A 5JJTA 3H63A 1S3LA 3QFNA 3AUZA 3H69A 4DT2A 3FGAC 4H1YP 3AV0A 2NYLC 5GTUA 3H64A 4WWLA 3ICFA 2BQ8X 4H2FA 4LTYA 1V73A 4OR9A 2WDDA 5F3WA 4ZVZA 2ZBMA 1FJMA 1XZWA
chains in the Genus database with same CATH superfamily
1G5BA 3THOB 4FCXA 2NPPC 4LACC 1MF8A 5IOHA 3GVEA 3H66A 1S3NA 4MP0A 5JPFA 3DSDA 1U32A 4B2OA 3QFMA 4O24A 1TCOA 2O8GA 1IT6A 4ORBA 4LU9A 4Q7FA 1M63A 4HD0A 3DW8C 4NZVA 3QFOA 3RL3A 3E7AA 3H67A 4O5GA 5EQVA 4V0XA 2YVTA 1S3MA 4H2GA 4UT2A 1T70A 2WDEA 5INBA 4H2IA 3ZU0A 2Z1AA 4H1SA 3D03A 1T71A 1Z2WA 4YKEA 1OIDA 2WDFA 1UF3A 2GJUA 2Z06A 2HY1A 3PSNA 4O43A 3QG5C 4JA7A 3PSOA 4I5LC 5B8IA 4I5NC 2HYOA 2BDXA 2YEQA 2AHDA 3ZTVA 4FBKA 3CK2A 1UTEA 1HO5A 3T1IA 2XMOA 4MOYA 4TUIA 5HPEA 3QFKA 4O4KA 3TGHA 3EGGA 3H62B 3K7WC 1NNWA 1WAO1 1HP1A 3THNA 4DSYA 4ORAA 1KBPA 4V0VA 4FBWA 4IL1A 4F0ZA 5JPEA 1QFCA 2QJCA 4ORCA 2Q8UA 4KBPA 4UT3B 3H68A 2NXFA 1JK7A 3H60A 2USHA 3IB7A 2R17A 3LL8A 5J28A 4FBQA 2CV9A 2P6BA 4M0VA 1AUIA 3IVEA 3RQZA 4H2BA 1HPUA 2KKNA 2Z72A 4KKZA 2DFJA 4MOVA 5DNYA 4DHLA 1S8EA 1QHWA 3C5WC 1Z2XA 3HVQA 4TUGA 1II7A 2BCDA 2IAEC 3V4YA 1S95A 2IE3C 2JOGA 2QFPA 4XPNA 1S70A 3EGHA 2QFRA 1XM7A 1OI8A 4V0WA 3DSCA 3E7BA 2HYPA 1WARA 3RL4A 1W24A 3JYFA 2WDCA 4UWQA 4UT3A 2A22A 3H61A 2O8AA 2DXLA 1SU1A 3KBPA 3IVDA 1USHA 3P71C 5C1VA 3IB8A 2NYMC 4JA9A 2IE4C 4ZX2A 3N5UA 3K7VC 4G9JA 3E0JA 3C9FA 1OIEA 4IYPC 4J6OA 2ZO9B 3RL5A 5JJTA 3H63A 1S3LA 3QFNA 3AUZA 3H69A 4DT2A 3FGAC 3FLOA 4H1YP 3AV0A 2NYLC 5GTUA 2ZOAA 3H64A 4WWLA 3ICFA 2DXNA 2BQ8X 4H2FA 4LTYA 1V73A 4OR9A 2WDDA 5F3WA 4ZVZA 2ZBMA 1FJMA 1XZWA
chains in the Genus database with same CATH topology
1G5BA 3THOB 4FCXA 2NPPC 4LACC 1MF8A 5IOHA 3GVEA 3H66A 1S3NA 4MP0A 5JPFA 3DSDA 1U32A 4B2OA 3QFMA 4O24A 1TCOA 2O8GA 1IT6A 4ORBA 4LU9A 4Q7FA 1M63A 4HD0A 3DW8C 4NZVA 3QFOA 3RL3A 3E7AA 3H67A 4O5GA 5EQVA 4V0XA 2YVTA 1S3MA 4H2GA 4UT2A 1T70A 2WDEA 5INBA 4H2IA 3ZU0A 2Z1AA 4H1SA 3D03A 1T71A 1Z2WA 4YKEA 1OIDA 2WDFA 1UF3A 2GJUA 2Z06A 2HY1A 3PSNA 4O43A 3QG5C 4JA7A 3PSOA 4I5LC 5B8IA 4I5NC 2HYOA 2BDXA 2YEQA 2AHDA 3ZTVA 4FBKA 3CK2A 1UTEA 1HO5A 3T1IA 2XMOA 4MOYA 4TUIA 5HPEA 3QFKA 4O4KA 3TGHA 3EGGA 3H62B 3K7WC 1NNWA 1WAO1 1HP1A 3THNA 4DSYA 4ORAA 1KBPA 4V0VA 4FBWA 4IL1A 4F0ZA 5JPEA 1QFCA 2QJCA 4ORCA 2Q8UA 4KBPA 4UT3B 3H68A 2NXFA 1JK7A 3H60A 2USHA 3IB7A 2R17A 3LL8A 5J28A 4FBQA 2CV9A 2P6BA 4M0VA 1AUIA 3IVEA 3RQZA 4H2BA 1HPUA 2KKNA 2Z72A 4KKZA 2DFJA 4MOVA 5DNYA 4DHLA 1S8EA 1QHWA 3C5WC 1Z2XA 3HVQA 4TUGA 1II7A 2BCDA 2IAEC 3V4YA 1S95A 2IE3C 2JOGA 2QFPA 4XPNA 1S70A 3EGHA 2QFRA 1XM7A 1OI8A 4V0WA 3DSCA 3E7BA 2HYPA 1WARA 3RL4A 1W24A 3JYFA 2WDCA 4UWQA 4UT3A 2A22A 3H61A 2O8AA 2DXLA 1SU1A 3KBPA 3IVDA 1USHA 3P71C 5C1VA 3IB8A 2NYMC 4JA9A 2IE4C 4ZX2A 3N5UA 3K7VC 4G9JA 3E0JA 3C9FA 1OIEA 4IYPC 4J6OA 2ZO9B 3RL5A 5JJTA 3H63A 1S3LA 3QFNA 3AUZA 3H69A 4DT2A 3FGAC 3FLOA 4H1YP 3AV0A 2NYLC 5GTUA 2ZOAA 3H64A 4WWLA 3ICFA 2DXNA 2BQ8X 4H2FA 4LTYA 1V73A 4OR9A 2WDDA 5F3WA 4ZVZA 2ZBMA 1FJMA 1XZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G5B A;  3THO B;  4FCX A;  2NPP C;  4LAC C;  1MF8 A;  5IOH A;  3GVE A;  3H66 A;  1S3N A;  4MP0 A;  5JPF A;  3DSD A;  1U32 A;  4B2O A;  3QFM A;  4O24 A;  1TCO A;  2O8G A;  1IT6 A;  4ORB A;  4LU9 A;  4Q7F A;  1M63 A;  4HD0 A;  3DW8 C;  4NZV A;  3QFO A;  3RL3 A;  3E7A A;  3H67 A;  4O5G A;  5EQV A;  4V0X A;  2YVT A;  1S3M A;  4H2G A;  4UT2 A;  1T70 A;  2WDE A;  5INB A;  4H2I A;  3ZU0 A;  2Z1A A;  4H1S A;  1T71 A;  1Z2W A;  4YKE A;  1OID A;  2WDF A;  1UF3 A;  2GJU A;  2Z06 A;  2HY1 A;  3PSN A;  4O43 A;  3QG5 C;  4JA7 A;  3PSO A;  4I5L C;  5B8I A;  4I5N C;  2HYO A;  2BDX A;  2AHD A;  3ZTV A;  4FBK A;  3CK2 A;  1UTE A;  1HO5 A;  3T1I A;  2XMO A;  4MOY A;  4TUI A;  5HPE A;  3QFK A;  4O4K A;  3TGH A;  3EGG A;  3H62 B;  3K7W C;  1NNW A;  1WAO 1;  1HP1 A;  3THN A;  4DSY A;  4ORA A;  1KBP A;  4V0V A;  4FBW A;  4IL1 A;  4F0Z A;  5JPE A;  1QFC A;  2QJC A;  4ORC A;  2Q8U A;  4KBP A;  4UT3 B;  3H68 A;  2NXF A;  1JK7 A;  3H60 A;  2USH A;  3IB7 A;  2R17 A;  3LL8 A;  5J28 A;  4FBQ A;  2CV9 A;  2P6B A;  4M0V A;  1AUI A;  3IVE A;  3RQZ A;  4H2B A;  1HPU A;  2KKN A;  2Z72 A;  4KKZ A;  2DFJ A;  4MOV A;  5DNY A;  4DHL A;  1S8E A;  1QHW A;  3C5W C;  1Z2X A;  3HVQ A;  4TUG A;  1II7 A;  2BCD A;  2IAE C;  3V4Y A;  1S95 A;  2IE3 C;  2JOG A;  2QFP A;  4XPN A;  1S70 A;  3EGH A;  2QFR A;  1XM7 A;  1OI8 A;  4V0W A;  3DSC A;  3E7B A;  2HYP A;  1WAR A;  3RL4 A;  1W24 A;  3JYF A;  2WDC A;  4UWQ A;  4UT3 A;  2A22 A;  3H61 A;  2O8A A;  1SU1 A;  3KBP A;  3IVD A;  1USH A;  3P71 C;  5C1V A;  3IB8 A;  2NYM C;  4JA9 A;  2IE4 C;  4ZX2 A;  3N5U A;  3K7V C;  4G9J A;  3C9F A;  1OIE A;  4IYP C;  4J6O A;  3RL5 A;  5JJT A;  3H63 A;  1S3L A;  3QFN A;  3AUZ A;  3H69 A;  4DT2 A;  3FGA C;  4H1Y P;  3AV0 A;  2NYL C;  5GTU A;  3H64 A;  4WWL A;  3ICF A;  2BQ8 X;  4H2F A;  4LTY A;  1V73 A;  4OR9 A;  2WDD A;  5F3W A;  4ZVZ A;  2ZBM A;  1FJM A;  1XZW A; 
#chains in the Genus database with same CATH topology
 1G5B A;  3THO B;  4FCX A;  2NPP C;  4LAC C;  1MF8 A;  5IOH A;  3GVE A;  3H66 A;  1S3N A;  4MP0 A;  5JPF A;  3DSD A;  1U32 A;  4B2O A;  3QFM A;  4O24 A;  1TCO A;  2O8G A;  1IT6 A;  4ORB A;  4LU9 A;  4Q7F A;  1M63 A;  4HD0 A;  3DW8 C;  4NZV A;  3QFO A;  3RL3 A;  3E7A A;  3H67 A;  4O5G A;  5EQV A;  4V0X A;  2YVT A;  1S3M A;  4H2G A;  4UT2 A;  1T70 A;  2WDE A;  5INB A;  4H2I A;  3ZU0 A;  2Z1A A;  4H1S A;  3D03 A;  1T71 A;  1Z2W A;  4YKE A;  1OID A;  2WDF A;  1UF3 A;  2GJU A;  2Z06 A;  2HY1 A;  3PSN A;  4O43 A;  3QG5 C;  4JA7 A;  3PSO A;  4I5L C;  5B8I A;  4I5N C;  2HYO A;  2BDX A;  2YEQ A;  2AHD A;  3ZTV A;  4FBK A;  3CK2 A;  1UTE A;  1HO5 A;  3T1I A;  2XMO A;  4MOY A;  4TUI A;  5HPE A;  3QFK A;  4O4K A;  3TGH A;  3EGG A;  3H62 B;  3K7W C;  1NNW A;  1WAO 1;  1HP1 A;  3THN A;  4DSY A;  4ORA A;  1KBP A;  4V0V A;  4FBW A;  4IL1 A;  4F0Z A;  5JPE A;  1QFC A;  2QJC A;  4ORC A;  2Q8U A;  4KBP A;  4UT3 B;  3H68 A;  2NXF A;  1JK7 A;  3H60 A;  2USH A;  3IB7 A;  2R17 A;  3LL8 A;  5J28 A;  4FBQ A;  2CV9 A;  2P6B A;  4M0V A;  1AUI A;  3IVE A;  3RQZ A;  4H2B A;  1HPU A;  2KKN A;  2Z72 A;  4KKZ A;  2DFJ A;  4MOV A;  5DNY A;  4DHL A;  1S8E A;  1QHW A;  3C5W C;  1Z2X A;  3HVQ A;  4TUG A;  1II7 A;  2BCD A;  2IAE C;  3V4Y A;  1S95 A;  2IE3 C;  2JOG A;  2QFP A;  4XPN A;  1S70 A;  3EGH A;  2QFR A;  1XM7 A;  1OI8 A;  4V0W A;  3DSC A;  3E7B A;  2HYP A;  1WAR A;  3RL4 A;  1W24 A;  3JYF A;  2WDC A;  4UWQ A;  4UT3 A;  2A22 A;  3H61 A;  2O8A A;  2DXL A;  1SU1 A;  3KBP A;  3IVD A;  1USH A;  3P71 C;  5C1V A;  3IB8 A;  2NYM C;  4JA9 A;  2IE4 C;  4ZX2 A;  3N5U A;  3K7V C;  4G9J A;  3E0J A;  3C9F A;  1OIE A;  4IYP C;  4J6O A;  2ZO9 B;  3RL5 A;  5JJT A;  3H63 A;  1S3L A;  3QFN A;  3AUZ A;  3H69 A;  4DT2 A;  3FGA C;  3FLO A;  4H1Y P;  3AV0 A;  2NYL C;  5GTU A;  2ZOA A;  3H64 A;  4WWL A;  3ICF A;  2DXN A;  2BQ8 X;  4H2F A;  4LTY A;  1V73 A;  4OR9 A;  2WDD A;  5F3W A;  4ZVZ A;  2ZBM A;  1FJM A;  1XZW A; 
#chains in the Genus database with same CATH homology
 1G5B A;  3THO B;  4FCX A;  2NPP C;  4LAC C;  1MF8 A;  5IOH A;  3GVE A;  3H66 A;  1S3N A;  4MP0 A;  5JPF A;  3DSD A;  1U32 A;  4B2O A;  3QFM A;  4O24 A;  1TCO A;  2O8G A;  1IT6 A;  4ORB A;  4LU9 A;  4Q7F A;  1M63 A;  4HD0 A;  3DW8 C;  4NZV A;  3QFO A;  3RL3 A;  3E7A A;  3H67 A;  4O5G A;  5EQV A;  4V0X A;  2YVT A;  1S3M A;  4H2G A;  4UT2 A;  1T70 A;  2WDE A;  5INB A;  4H2I A;  3ZU0 A;  2Z1A A;  4H1S A;  3D03 A;  1T71 A;  1Z2W A;  4YKE A;  1OID A;  2WDF A;  1UF3 A;  2GJU A;  2Z06 A;  2HY1 A;  3PSN A;  4O43 A;  3QG5 C;  4JA7 A;  3PSO A;  4I5L C;  5B8I A;  4I5N C;  2HYO A;  2BDX A;  2YEQ A;  2AHD A;  3ZTV A;  4FBK A;  3CK2 A;  1UTE A;  1HO5 A;  3T1I A;  2XMO A;  4MOY A;  4TUI A;  5HPE A;  3QFK A;  4O4K A;  3TGH A;  3EGG A;  3H62 B;  3K7W C;  1NNW A;  1WAO 1;  1HP1 A;  3THN A;  4DSY A;  4ORA A;  1KBP A;  4V0V A;  4FBW A;  4IL1 A;  4F0Z A;  5JPE A;  1QFC A;  2QJC A;  4ORC A;  2Q8U A;  4KBP A;  4UT3 B;  3H68 A;  2NXF A;  1JK7 A;  3H60 A;  2USH A;  3IB7 A;  2R17 A;  3LL8 A;  5J28 A;  4FBQ A;  2CV9 A;  2P6B A;  4M0V A;  1AUI A;  3IVE A;  3RQZ A;  4H2B A;  1HPU A;  2KKN A;  2Z72 A;  4KKZ A;  2DFJ A;  4MOV A;  5DNY A;  4DHL A;  1S8E A;  1QHW A;  3C5W C;  1Z2X A;  3HVQ A;  4TUG A;  1II7 A;  2BCD A;  2IAE C;  3V4Y A;  1S95 A;  2IE3 C;  2JOG A;  2QFP A;  4XPN A;  1S70 A;  3EGH A;  2QFR A;  1XM7 A;  1OI8 A;  4V0W A;  3DSC A;  3E7B A;  2HYP A;  1WAR A;  3RL4 A;  1W24 A;  3JYF A;  2WDC A;  4UWQ A;  4UT3 A;  2A22 A;  3H61 A;  2O8A A;  2DXL A;  1SU1 A;  3KBP A;  3IVD A;  1USH A;  3P71 C;  5C1V A;  3IB8 A;  2NYM C;  4JA9 A;  2IE4 C;  4ZX2 A;  3N5U A;  3K7V C;  4G9J A;  3E0J A;  3C9F A;  1OIE A;  4IYP C;  4J6O A;  2ZO9 B;  3RL5 A;  5JJT A;  3H63 A;  1S3L A;  3QFN A;  3AUZ A;  3H69 A;  4DT2 A;  3FGA C;  3FLO A;  4H1Y P;  3AV0 A;  2NYL C;  5GTU A;  2ZOA A;  3H64 A;  4WWL A;  3ICF A;  2DXN A;  2BQ8 X;  4H2F A;  4LTY A;  1V73 A;  4OR9 A;  2WDD A;  5F3W A;  4ZVZ A;  2ZBM A;  1FJM A;  1XZW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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