2USHA

5'-nucleotidase from e. coli
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
524
structure length
506
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title X-ray structure of the Escherichia coli periplasmic 5'-nucleotidase containing a dimetal catalytic site.
pubmed doi rcsb
molecule keywords 5'-NUCLEOTIDASE
total genus 175
structure length 506
sequence length 524
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 1998-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2ushA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2ushA02
4ORAA 3IB7A 4FBQA 4ZX2A 3PSNA 3AUZA 3THOB 1AUIA 1S3MA 1UF3A 4OR9A 2Z1AA 3RL3A 5JJTA 4V0XA 2ZBMA 1S95A 4Q7FA 4H2GA 4ZVZA 1T70A 4JA7A 1USHA 2WDFA 3IVEA 1QHWA 3RL4A 3E7AA 2QFPA 3QG5C 4YKEA 4IL1A 4LTYA 4TUGA 1JK7A 2DFJA 2NXFA 3QFKA 3H64A 4V0WA 1HPUA 3FGAC 4UT3B 5DNYA 3H63A 2Q8UA 3H66A 3KBPA 4XPNA 3EGGA 1NNWA 2XMOA 4WWLA 3RL5A 3RQZA 4I5LC 2A22A 2QJCA 4O24A 4F0ZA 5F3WA 4DHLA 3H60A 4I5NC 1HO5A 1WARA 2CV9A 4HD0A 4M0VA 3IVDA 4O43A 4DSYA 2JOGA 3N5UA 1G5BA 1WAO1 5C1VA 3AV0A 2USHA 4LU9A 3LL8A 2IE4C 3CK2A 1KBPA 1Z2XA 2IAEC 3H68A 2KKNA 1XM7A 4J6OA 3THNA 1Z2WA 5IOHA 1S3LA 3C9FA 3QFNA 4H1SA 4FBWA 4FCXA 3E7BA 4MOVA 2NPPC 4UT2A 5J28A 5B8IA 2NYMC 1HP1A 4IYPC 2WDCA 2QFRA 5HPEA 3T1IA 5JPFA 3DSDA 1TCOA 4O4KA 2HYOA 2O8GA 1T71A 1UTEA 1OI8A 5GTUA 3ICFA 3ZU0A 4UT3A 5JPEA 3IB8A 2AHDA 5EQVA 4MP0A 3HVQA 1SU1A 3V4YA 2BCDA 2P6BA 3JYFA 3TGHA 4H1YP 4V0VA 4O5GA 1OIDA 1XZWA 3QFMA 1S3NA 3K7WC 4H2BA 1W24A 4TUIA 2R17A 2HYPA 3DW8C 1S8EA 3GVEA 3ZTVA 2NYLC 3P71C 1U32A 4FBKA 1FJMA 3QFOA 4MOYA 4ORBA 3K7VC 2Z72A 1QFCA 2WDEA 2IE3C 1MF8A 2HY1A 4DT2A 3H69A 4KKZA 4NZVA 1V73A 2YVTA 2O8AA 1M63A 2BDXA 1II7A 4KBPA 4G9JA 2GJUA 4JA9A 1S70A 3PSOA 3C5WC 1OIEA 3H61A 2BQ8X 4B2OA 1IT6A 4H2FA 5INBA 4H2IA 4ORCA 2Z06A 3EGHA 4UWQA 3DSCA 3H67A 2WDDA 3H62B 4LACC
chains in the Genus database with same CATH superfamily
4ORAA 3IB7A 4FBQA 4ZX2A 2DXNA 3PSNA 3AUZA 3THOB 1AUIA 1S3MA 1UF3A 4OR9A 2Z1AA 3FLOA 3RL3A 5JJTA 4V0XA 2ZBMA 1S95A 4Q7FA 4H2GA 4ZVZA 2YEQA 1T70A 4JA7A 1USHA 2WDFA 3IVEA 1QHWA 3RL4A 2DXLA 3E7AA 2QFPA 3QG5C 4YKEA 4IL1A 4LTYA 4TUGA 1JK7A 2DFJA 2NXFA 3QFKA 3H64A 4V0WA 1HPUA 3FGAC 4UT3B 5DNYA 3H63A 2Q8UA 3H66A 3KBPA 4XPNA 3EGGA 1NNWA 2XMOA 4WWLA 3RL5A 3RQZA 4I5LC 3E0JA 2A22A 2QJCA 4O24A 4F0ZA 5F3WA 4DHLA 3H60A 4I5NC 1HO5A 1WARA 2CV9A 4HD0A 4M0VA 3IVDA 4O43A 4DSYA 2JOGA 3N5UA 1G5BA 1WAO1 5C1VA 3AV0A 2USHA 4LU9A 3LL8A 2IE4C 3CK2A 1KBPA 1Z2XA 2IAEC 3H68A 2KKNA 1XM7A 4J6OA 3THNA 1Z2WA 5IOHA 1S3LA 3C9FA 3QFNA 4H1SA 4FBWA 4FCXA 3E7BA 4MOVA 2NPPC 4UT2A 5J28A 5B8IA 2NYMC 1HP1A 4IYPC 2WDCA 2QFRA 5HPEA 3T1IA 5JPFA 3DSDA 1TCOA 4O4KA 2HYOA 2O8GA 1T71A 1UTEA 1OI8A 5GTUA 3ICFA 3ZU0A 4UT3A 5JPEA 3IB8A 2AHDA 5EQVA 4MP0A 3HVQA 1SU1A 3V4YA 2BCDA 2P6BA 2ZOAA 3D03A 3JYFA 3TGHA 4H1YP 4V0VA 4O5GA 1OIDA 1XZWA 3QFMA 1S3NA 3K7WC 4H2BA 1W24A 4TUIA 2R17A 2HYPA 3DW8C 1S8EA 3GVEA 3ZTVA 2NYLC 3P71C 1U32A 4FBKA 1FJMA 3QFOA 4MOYA 4ORBA 3K7VC 2Z72A 1QFCA 2WDEA 2IE3C 1MF8A 2HY1A 4DT2A 3H69A 4KKZA 4NZVA 1V73A 2YVTA 2O8AA 1M63A 2BDXA 1II7A 4KBPA 4G9JA 2GJUA 4JA9A 1S70A 3PSOA 3C5WC 1OIEA 3H61A 2BQ8X 4B2OA 1IT6A 4H2FA 5INBA 2ZO9B 4H2IA 4ORCA 2Z06A 3EGHA 4UWQA 3DSCA 3H67A 2WDDA 3H62B 4LACC
chains in the Genus database with same CATH topology
4ORAA 3IB7A 4FBQA 4ZX2A 2DXNA 3PSNA 3AUZA 3THOB 1AUIA 1S3MA 1UF3A 4OR9A 2Z1AA 3FLOA 3RL3A 5JJTA 4V0XA 2ZBMA 1S95A 4Q7FA 4H2GA 4ZVZA 2YEQA 1T70A 4JA7A 1USHA 2WDFA 3IVEA 1QHWA 3RL4A 2DXLA 3E7AA 2QFPA 3QG5C 4YKEA 4IL1A 4LTYA 4TUGA 1JK7A 2DFJA 2NXFA 3QFKA 3H64A 4V0WA 1HPUA 3FGAC 4UT3B 5DNYA 3H63A 2Q8UA 3H66A 3KBPA 4XPNA 3EGGA 1NNWA 2XMOA 4WWLA 3RL5A 3RQZA 4I5LC 3E0JA 2A22A 2QJCA 4O24A 4F0ZA 5F3WA 4DHLA 3H60A 4I5NC 1HO5A 1WARA 2CV9A 4HD0A 4M0VA 3IVDA 4O43A 4DSYA 2JOGA 3N5UA 1G5BA 1WAO1 5C1VA 3AV0A 2USHA 4LU9A 3LL8A 2IE4C 3CK2A 1KBPA 1Z2XA 2IAEC 3H68A 2KKNA 1XM7A 4J6OA 3THNA 1Z2WA 5IOHA 1S3LA 3C9FA 3QFNA 4H1SA 4FBWA 4FCXA 3E7BA 4MOVA 2NPPC 4UT2A 5J28A 5B8IA 2NYMC 1HP1A 4IYPC 2WDCA 2QFRA 5HPEA 3T1IA 5JPFA 3DSDA 1TCOA 4O4KA 2HYOA 2O8GA 1T71A 1UTEA 1OI8A 5GTUA 3ICFA 3ZU0A 4UT3A 5JPEA 3IB8A 2AHDA 5EQVA 4MP0A 3HVQA 1SU1A 3V4YA 2BCDA 2P6BA 2ZOAA 3D03A 3JYFA 3TGHA 4H1YP 4V0VA 4O5GA 1OIDA 1XZWA 3QFMA 1S3NA 3K7WC 4H2BA 1W24A 4TUIA 2R17A 2HYPA 3DW8C 1S8EA 3GVEA 3ZTVA 2NYLC 3P71C 1U32A 4FBKA 1FJMA 3QFOA 4MOYA 4ORBA 3K7VC 2Z72A 1QFCA 2WDEA 2IE3C 1MF8A 2HY1A 4DT2A 3H69A 4KKZA 4NZVA 1V73A 2YVTA 2O8AA 1M63A 2BDXA 1II7A 4KBPA 4G9JA 2GJUA 4JA9A 1S70A 3PSOA 3C5WC 1OIEA 3H61A 2BQ8X 4B2OA 1IT6A 4H2FA 5INBA 2ZO9B 4H2IA 4ORCA 2Z06A 3EGHA 4UWQA 3DSCA 3H67A 2WDDA 3H62B 4LACC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ORA A;  3IB7 A;  4FBQ A;  4ZX2 A;  3PSN A;  3AUZ A;  3THO B;  1AUI A;  1S3M A;  1UF3 A;  4OR9 A;  2Z1A A;  3RL3 A;  5JJT A;  4V0X A;  2ZBM A;  1S95 A;  4Q7F A;  4H2G A;  4ZVZ A;  1T70 A;  4JA7 A;  1USH A;  2WDF A;  3IVE A;  1QHW A;  3RL4 A;  3E7A A;  2QFP A;  3QG5 C;  4YKE A;  4IL1 A;  4LTY A;  4TUG A;  1JK7 A;  2DFJ A;  2NXF A;  3QFK A;  3H64 A;  4V0W A;  1HPU A;  3FGA C;  4UT3 B;  5DNY A;  3H63 A;  2Q8U A;  3H66 A;  3KBP A;  4XPN A;  3EGG A;  1NNW A;  2XMO A;  4WWL A;  3RL5 A;  3RQZ A;  4I5L C;  2A22 A;  2QJC A;  4O24 A;  4F0Z A;  5F3W A;  4DHL A;  3H60 A;  4I5N C;  1HO5 A;  1WAR A;  2CV9 A;  4HD0 A;  4M0V A;  3IVD A;  4O43 A;  4DSY A;  2JOG A;  3N5U A;  1G5B A;  1WAO 1;  5C1V A;  3AV0 A;  2USH A;  4LU9 A;  3LL8 A;  2IE4 C;  3CK2 A;  1KBP A;  1Z2X A;  2IAE C;  3H68 A;  2KKN A;  1XM7 A;  4J6O A;  3THN A;  1Z2W A;  5IOH A;  1S3L A;  3C9F A;  3QFN A;  4H1S A;  4FBW A;  4FCX A;  3E7B A;  4MOV A;  2NPP C;  4UT2 A;  5J28 A;  5B8I A;  2NYM C;  1HP1 A;  4IYP C;  2WDC A;  2QFR A;  5HPE A;  3T1I A;  5JPF A;  3DSD A;  1TCO A;  4O4K A;  2HYO A;  2O8G A;  1T71 A;  1UTE A;  1OI8 A;  5GTU A;  3ICF A;  3ZU0 A;  4UT3 A;  5JPE A;  3IB8 A;  2AHD A;  5EQV A;  4MP0 A;  3HVQ A;  1SU1 A;  3V4Y A;  2BCD A;  2P6B A;  3JYF A;  3TGH A;  4H1Y P;  4V0V A;  4O5G A;  1OID A;  1XZW A;  3QFM A;  1S3N A;  3K7W C;  4H2B A;  1W24 A;  4TUI A;  2R17 A;  2HYP A;  3DW8 C;  1S8E A;  3GVE A;  3ZTV A;  2NYL C;  3P71 C;  1U32 A;  4FBK A;  1FJM A;  3QFO A;  4MOY A;  4ORB A;  3K7V C;  2Z72 A;  1QFC A;  2WDE A;  2IE3 C;  1MF8 A;  2HY1 A;  4DT2 A;  3H69 A;  4KKZ A;  4NZV A;  1V73 A;  2YVT A;  2O8A A;  1M63 A;  2BDX A;  1II7 A;  4KBP A;  4G9J A;  2GJU A;  4JA9 A;  1S70 A;  3PSO A;  3C5W C;  1OIE A;  3H61 A;  2BQ8 X;  4B2O A;  1IT6 A;  4H2F A;  5INB A;  4H2I A;  4ORC A;  2Z06 A;  3EGH A;  4UWQ A;  3DSC A;  3H67 A;  2WDD A;  3H62 B;  4LAC C; 
#chains in the Genus database with same CATH topology
 4ORA A;  3IB7 A;  4FBQ A;  4ZX2 A;  2DXN A;  3PSN A;  3AUZ A;  3THO B;  1AUI A;  1S3M A;  1UF3 A;  4OR9 A;  2Z1A A;  3FLO A;  3RL3 A;  5JJT A;  4V0X A;  2ZBM A;  1S95 A;  4Q7F A;  4H2G A;  4ZVZ A;  2YEQ A;  1T70 A;  4JA7 A;  1USH A;  2WDF A;  3IVE A;  1QHW A;  3RL4 A;  2DXL A;  3E7A A;  2QFP A;  3QG5 C;  4YKE A;  4IL1 A;  4LTY A;  4TUG A;  1JK7 A;  2DFJ A;  2NXF A;  3QFK A;  3H64 A;  4V0W A;  1HPU A;  3FGA C;  4UT3 B;  5DNY A;  3H63 A;  2Q8U A;  3H66 A;  3KBP A;  4XPN A;  3EGG A;  1NNW A;  2XMO A;  4WWL A;  3RL5 A;  3RQZ A;  4I5L C;  3E0J A;  2A22 A;  2QJC A;  4O24 A;  4F0Z A;  5F3W A;  4DHL A;  3H60 A;  4I5N C;  1HO5 A;  1WAR A;  2CV9 A;  4HD0 A;  4M0V A;  3IVD A;  4O43 A;  4DSY A;  2JOG A;  3N5U A;  1G5B A;  1WAO 1;  5C1V A;  3AV0 A;  2USH A;  4LU9 A;  3LL8 A;  2IE4 C;  3CK2 A;  1KBP A;  1Z2X A;  2IAE C;  3H68 A;  2KKN A;  1XM7 A;  4J6O A;  3THN A;  1Z2W A;  5IOH A;  1S3L A;  3C9F A;  3QFN A;  4H1S A;  4FBW A;  4FCX A;  3E7B A;  4MOV A;  2NPP C;  4UT2 A;  5J28 A;  5B8I A;  2NYM C;  1HP1 A;  4IYP C;  2WDC A;  2QFR A;  5HPE A;  3T1I A;  5JPF A;  3DSD A;  1TCO A;  4O4K A;  2HYO A;  2O8G A;  1T71 A;  1UTE A;  1OI8 A;  5GTU A;  3ICF A;  3ZU0 A;  4UT3 A;  5JPE A;  3IB8 A;  2AHD A;  5EQV A;  4MP0 A;  3HVQ A;  1SU1 A;  3V4Y A;  2BCD A;  2P6B A;  2ZOA A;  3D03 A;  3JYF A;  3TGH A;  4H1Y P;  4V0V A;  4O5G A;  1OID A;  1XZW A;  3QFM A;  1S3N A;  3K7W C;  4H2B A;  1W24 A;  4TUI A;  2R17 A;  2HYP A;  3DW8 C;  1S8E A;  3GVE A;  3ZTV A;  2NYL C;  3P71 C;  1U32 A;  4FBK A;  1FJM A;  3QFO A;  4MOY A;  4ORB A;  3K7V C;  2Z72 A;  1QFC A;  2WDE A;  2IE3 C;  1MF8 A;  2HY1 A;  4DT2 A;  3H69 A;  4KKZ A;  4NZV A;  1V73 A;  2YVT A;  2O8A A;  1M63 A;  2BDX A;  1II7 A;  4KBP A;  4G9J A;  2GJU A;  4JA9 A;  1S70 A;  3PSO A;  3C5W C;  1OIE A;  3H61 A;  2BQ8 X;  4B2O A;  1IT6 A;  4H2F A;  5INB A;  2ZO9 B;  4H2I A;  4ORC A;  2Z06 A;  3EGH A;  4UWQ A;  3DSC A;  3H67 A;  2WDD A;  3H62 B;  4LAC C; 
#chains in the Genus database with same CATH homology
 4ORA A;  3IB7 A;  4FBQ A;  4ZX2 A;  2DXN A;  3PSN A;  3AUZ A;  3THO B;  1AUI A;  1S3M A;  1UF3 A;  4OR9 A;  2Z1A A;  3FLO A;  3RL3 A;  5JJT A;  4V0X A;  2ZBM A;  1S95 A;  4Q7F A;  4H2G A;  4ZVZ A;  2YEQ A;  1T70 A;  4JA7 A;  1USH A;  2WDF A;  3IVE A;  1QHW A;  3RL4 A;  2DXL A;  3E7A A;  2QFP A;  3QG5 C;  4YKE A;  4IL1 A;  4LTY A;  4TUG A;  1JK7 A;  2DFJ A;  2NXF A;  3QFK A;  3H64 A;  4V0W A;  1HPU A;  3FGA C;  4UT3 B;  5DNY A;  3H63 A;  2Q8U A;  3H66 A;  3KBP A;  4XPN A;  3EGG A;  1NNW A;  2XMO A;  4WWL A;  3RL5 A;  3RQZ A;  4I5L C;  3E0J A;  2A22 A;  2QJC A;  4O24 A;  4F0Z A;  5F3W A;  4DHL A;  3H60 A;  4I5N C;  1HO5 A;  1WAR A;  2CV9 A;  4HD0 A;  4M0V A;  3IVD A;  4O43 A;  4DSY A;  2JOG A;  3N5U A;  1G5B A;  1WAO 1;  5C1V A;  3AV0 A;  2USH A;  4LU9 A;  3LL8 A;  2IE4 C;  3CK2 A;  1KBP A;  1Z2X A;  2IAE C;  3H68 A;  2KKN A;  1XM7 A;  4J6O A;  3THN A;  1Z2W A;  5IOH A;  1S3L A;  3C9F A;  3QFN A;  4H1S A;  4FBW A;  4FCX A;  3E7B A;  4MOV A;  2NPP C;  4UT2 A;  5J28 A;  5B8I A;  2NYM C;  1HP1 A;  4IYP C;  2WDC A;  2QFR A;  5HPE A;  3T1I A;  5JPF A;  3DSD A;  1TCO A;  4O4K A;  2HYO A;  2O8G A;  1T71 A;  1UTE A;  1OI8 A;  5GTU A;  3ICF A;  3ZU0 A;  4UT3 A;  5JPE A;  3IB8 A;  2AHD A;  5EQV A;  4MP0 A;  3HVQ A;  1SU1 A;  3V4Y A;  2BCD A;  2P6B A;  2ZOA A;  3D03 A;  3JYF A;  3TGH A;  4H1Y P;  4V0V A;  4O5G A;  1OID A;  1XZW A;  3QFM A;  1S3N A;  3K7W C;  4H2B A;  1W24 A;  4TUI A;  2R17 A;  2HYP A;  3DW8 C;  1S8E A;  3GVE A;  3ZTV A;  2NYL C;  3P71 C;  1U32 A;  4FBK A;  1FJM A;  3QFO A;  4MOY A;  4ORB A;  3K7V C;  2Z72 A;  1QFC A;  2WDE A;  2IE3 C;  1MF8 A;  2HY1 A;  4DT2 A;  3H69 A;  4KKZ A;  4NZV A;  1V73 A;  2YVT A;  2O8A A;  1M63 A;  2BDX A;  1II7 A;  4KBP A;  4G9J A;  2GJU A;  4JA9 A;  1S70 A;  3PSO A;  3C5W C;  1OIE A;  3H61 A;  2BQ8 X;  4B2O A;  1IT6 A;  4H2F A;  5INB A;  2ZO9 B;  4H2I A;  4ORC A;  2Z06 A;  3EGH A;  4UWQ A;  3DSC A;  3H67 A;  2WDD A;  3H62 B;  4LAC C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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