2Z06A

Crystal structure of uncharacterized conserved protein from thermus thermophilus
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
252
structure length
252
Chain Sequence
MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Putative uncharacterized protein TTHA0625
publication title Crystal structure of uncharacterized conserved protein from Thermus thermophilus
rcsb
source organism Thermus thermophilus
total genus 82
structure length 252
sequence length 252
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13277 YmdB YmdB-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2z06A00
3H63A 3H66A 3K7WC 2NPPC 1WAO1 5EQVA 4ZVZA 3V4YA 2DFJA 1USHA 2IE4C 3RL4A 3QFKA 3IB8A 4LU9A 4MOYA 1U32A 4UT2A 1HPUA 4DHLA 3QG5C 4FBKA 4UT3A 5JPFA 3ZTVA 3RQZA 1AUIA 2IE3C 2WDDA 3H69A 2WDEA 1G5BA 3THNA 3ZU0A 2NXFA 3HVQA 3DSCA 3C9FA 4FBQA 3EGHA 4H2GA 3RL5A 4TUIA 4TUGA 2BDXA 1S95A 4O5GA 2Z06A 3K7VC 3E7BA 4V0VA 1OI8A 2BCDA 2IAEC 4O24A 1FJMA 2ZBMA 3E7AA 4J6OA 4JA9A 4XPNA 5GTUA 3GVEA 1S3MA 4I5LC 3H62B 2WDFA 4IYPC 2HYOA 3QFOA 2BQ8X 4G9JA 4V0WA 3TGHA 5F3WA 1OIEA 2YVTA 3H60A 3KBPA 3N5UA 3H67A 3QFNA 4KKZA 4O43A 1W24A 4LACC 1HP1A 3RL3A 4OR9A 2HYPA 5JJTA 1T71A 4H2IA 3THOB 1S3LA 2QFPA 4KBPA 3QFMA 4FBWA 5J28A 1SU1A 2USHA 4ORCA 4UT3B 4ORBA 1Z2XA 2A22A 4V0XA 4B2OA 3FGAC 3LL8A 1XM7A 4F0ZA 4H2FA 5JPEA 3ICFA 1QHWA 2R17A 4JA7A 1TCOA 1T70A 4DSYA 4IL1A 1M63A 4H1YP 4NZVA 3AV0A 4UWQA 3H68A 1V73A 4ZX2A 2AHDA 1OIDA 5INBA 5C1VA 5B8IA 2JOGA 2WDCA 1HO5A 3P71C 1S8EA 3H64A 3DSDA 3CK2A 4O4KA 4FCXA 1QFCA 3T1IA 1Z2WA 2Z72A 1S70A 5IOHA 4M0VA 3AUZA 2GJUA 4H2BA 4LTYA 1WARA 3H61A 2NYLC 1S3NA 2P6BA 3DW8C 1IT6A 2QJCA 1MF8A 4MP0A 3IB7A 4MOVA 4H1SA 1XZWA 3JYFA 5HPEA 4YKEA 3PSOA 4WWLA 2Z1AA 2O8AA 3EGGA 2CV9A 2XMOA 4Q7FA 3C5WC 2KKNA 3IVEA 2O8GA 1UTEA 4HD0A 4I5NC 4ORAA 1II7A 3IVDA 3PSNA 1KBPA 1JK7A 1NNWA 2NYMC 2QFRA 4DT2A 1UF3A 2HY1A 2Q8UA 5DNYA
chains in the Genus database with same CATH superfamily
3H63A 3H66A 3K7WC 2NPPC 1WAO1 5EQVA 2DXNA 4ZVZA 3V4YA 2DFJA 1USHA 2IE4C 3RL4A 3QFKA 3IB8A 4LU9A 4MOYA 1U32A 4UT2A 1HPUA 4DHLA 3QG5C 4FBKA 4UT3A 5JPFA 3ZTVA 3RQZA 1AUIA 2IE3C 2WDDA 3H69A 2WDEA 3E0JA 1G5BA 3THNA 3ZU0A 2NXFA 3HVQA 3DSCA 3C9FA 4FBQA 3EGHA 4H2GA 3RL5A 4TUIA 4TUGA 2BDXA 1S95A 3D03A 4O5GA 2Z06A 3K7VC 3E7BA 4V0VA 1OI8A 2BCDA 2IAEC 4O24A 1FJMA 2ZBMA 3E7AA 4J6OA 4JA9A 4XPNA 5GTUA 3GVEA 1S3MA 3FLOA 4I5LC 3H62B 2WDFA 4IYPC 2HYOA 3QFOA 2BQ8X 4G9JA 4V0WA 3TGHA 5F3WA 1OIEA 2YVTA 3H60A 3KBPA 3N5UA 3H67A 3QFNA 4KKZA 4O43A 1W24A 4LACC 1HP1A 3RL3A 4OR9A 2HYPA 5JJTA 1T71A 4H2IA 3THOB 1S3LA 2QFPA 4KBPA 3QFMA 4FBWA 5J28A 1SU1A 2USHA 4ORCA 4UT3B 4ORBA 1Z2XA 2A22A 4V0XA 4B2OA 3FGAC 3LL8A 1XM7A 4F0ZA 4H2FA 5JPEA 3ICFA 1QHWA 2R17A 4JA7A 1TCOA 1T70A 4DSYA 4IL1A 1M63A 4H1YP 4NZVA 3AV0A 4UWQA 3H68A 1V73A 4ZX2A 2AHDA 1OIDA 5INBA 5C1VA 2DXLA 2JOGA 5B8IA 2WDCA 1HO5A 3P71C 1S8EA 3H64A 3DSDA 3CK2A 4O4KA 4FCXA 1QFCA 3T1IA 1Z2WA 2Z72A 1S70A 5IOHA 2ZO9B 4M0VA 3AUZA 2GJUA 4H2BA 4LTYA 1WARA 3H61A 2NYLC 1S3NA 2P6BA 2YEQA 3DW8C 1IT6A 2QJCA 1MF8A 4MP0A 3IB7A 4MOVA 4H1SA 1XZWA 3JYFA 5HPEA 4YKEA 3PSOA 4WWLA 2Z1AA 2O8AA 3EGGA 2CV9A 2XMOA 4Q7FA 2ZOAA 3C5WC 2KKNA 3IVEA 2O8GA 1UTEA 4HD0A 4I5NC 4ORAA 1II7A 3IVDA 3PSNA 1KBPA 1JK7A 1NNWA 2NYMC 2QFRA 4DT2A 1UF3A 2HY1A 2Q8UA 5DNYA
chains in the Genus database with same CATH topology
3H63A 3H66A 3K7WC 2NPPC 1WAO1 5EQVA 2DXNA 4ZVZA 3V4YA 2DFJA 1USHA 2IE4C 3RL4A 3QFKA 3IB8A 4LU9A 4MOYA 1U32A 4UT2A 1HPUA 4DHLA 3QG5C 4FBKA 4UT3A 5JPFA 3ZTVA 3RQZA 1AUIA 2IE3C 2WDDA 3H69A 2WDEA 3E0JA 1G5BA 3THNA 3ZU0A 2NXFA 3HVQA 3DSCA 3C9FA 4FBQA 3EGHA 4H2GA 3RL5A 4TUIA 4TUGA 2BDXA 1S95A 3D03A 4O5GA 2Z06A 3K7VC 3E7BA 4V0VA 1OI8A 2BCDA 2IAEC 4O24A 1FJMA 2ZBMA 3E7AA 4J6OA 4JA9A 4XPNA 5GTUA 3GVEA 1S3MA 3FLOA 4I5LC 3H62B 2WDFA 4IYPC 2HYOA 3QFOA 2BQ8X 4G9JA 4V0WA 3TGHA 5F3WA 1OIEA 2YVTA 3H60A 3KBPA 3N5UA 3H67A 3QFNA 4KKZA 4O43A 1W24A 4LACC 1HP1A 3RL3A 4OR9A 2HYPA 5JJTA 1T71A 4H2IA 3THOB 1S3LA 2QFPA 4KBPA 3QFMA 4FBWA 5J28A 1SU1A 2USHA 4ORCA 4UT3B 4ORBA 1Z2XA 2A22A 4V0XA 4B2OA 3FGAC 3LL8A 1XM7A 4F0ZA 4H2FA 5JPEA 3ICFA 1QHWA 2R17A 4JA7A 1TCOA 1T70A 4DSYA 4IL1A 1M63A 4H1YP 4NZVA 3AV0A 4UWQA 3H68A 1V73A 4ZX2A 2AHDA 1OIDA 5INBA 5C1VA 2DXLA 2JOGA 5B8IA 2WDCA 1HO5A 3P71C 1S8EA 3H64A 3DSDA 3CK2A 4O4KA 4FCXA 1QFCA 3T1IA 1Z2WA 2Z72A 1S70A 5IOHA 2ZO9B 4M0VA 3AUZA 2GJUA 4H2BA 4LTYA 1WARA 3H61A 2NYLC 1S3NA 2P6BA 2YEQA 3DW8C 1IT6A 2QJCA 1MF8A 4MP0A 3IB7A 4MOVA 4H1SA 1XZWA 3JYFA 5HPEA 4YKEA 3PSOA 4WWLA 2Z1AA 2O8AA 3EGGA 2CV9A 2XMOA 4Q7FA 2ZOAA 3C5WC 2KKNA 3IVEA 2O8GA 1UTEA 4HD0A 4I5NC 4ORAA 1II7A 3IVDA 3PSNA 1KBPA 1JK7A 1NNWA 2NYMC 2QFRA 4DT2A 1UF3A 2HY1A 2Q8UA 5DNYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H63 A;  3H66 A;  3K7W C;  2NPP C;  1WAO 1;  5EQV A;  4ZVZ A;  3V4Y A;  2DFJ A;  1USH A;  2IE4 C;  3RL4 A;  3QFK A;  3IB8 A;  4LU9 A;  4MOY A;  1U32 A;  4UT2 A;  1HPU A;  4DHL A;  3QG5 C;  4FBK A;  4UT3 A;  5JPF A;  3ZTV A;  3RQZ A;  1AUI A;  2IE3 C;  2WDD A;  3H69 A;  2WDE A;  1G5B A;  3THN A;  3ZU0 A;  2NXF A;  3HVQ A;  3DSC A;  3C9F A;  4FBQ A;  3EGH A;  4H2G A;  3RL5 A;  4TUI A;  4TUG A;  2BDX A;  1S95 A;  4O5G A;  2Z06 A;  3K7V C;  3E7B A;  4V0V A;  1OI8 A;  2BCD A;  2IAE C;  4O24 A;  1FJM A;  2ZBM A;  3E7A A;  4J6O A;  4JA9 A;  4XPN A;  5GTU A;  3GVE A;  1S3M A;  4I5L C;  3H62 B;  2WDF A;  4IYP C;  2HYO A;  3QFO A;  2BQ8 X;  4G9J A;  4V0W A;  3TGH A;  5F3W A;  1OIE A;  2YVT A;  3H60 A;  3KBP A;  3N5U A;  3H67 A;  3QFN A;  4KKZ A;  4O43 A;  1W24 A;  4LAC C;  1HP1 A;  3RL3 A;  4OR9 A;  2HYP A;  5JJT A;  1T71 A;  4H2I A;  3THO B;  1S3L A;  2QFP A;  4KBP A;  3QFM A;  4FBW A;  5J28 A;  1SU1 A;  2USH A;  4ORC A;  4UT3 B;  4ORB A;  1Z2X A;  2A22 A;  4V0X A;  4B2O A;  3FGA C;  3LL8 A;  1XM7 A;  4F0Z A;  4H2F A;  5JPE A;  3ICF A;  1QHW A;  2R17 A;  4JA7 A;  1TCO A;  1T70 A;  4DSY A;  4IL1 A;  1M63 A;  4H1Y P;  4NZV A;  3AV0 A;  4UWQ A;  3H68 A;  1V73 A;  4ZX2 A;  2AHD A;  1OID A;  5INB A;  5C1V A;  5B8I A;  2JOG A;  2WDC A;  1HO5 A;  3P71 C;  1S8E A;  3H64 A;  3DSD A;  3CK2 A;  4O4K A;  4FCX A;  1QFC A;  3T1I A;  1Z2W A;  2Z72 A;  1S70 A;  5IOH A;  4M0V A;  3AUZ A;  2GJU A;  4H2B A;  4LTY A;  1WAR A;  3H61 A;  2NYL C;  1S3N A;  2P6B A;  3DW8 C;  1IT6 A;  2QJC A;  1MF8 A;  4MP0 A;  3IB7 A;  4MOV A;  4H1S A;  1XZW A;  3JYF A;  5HPE A;  4YKE A;  3PSO A;  4WWL A;  2Z1A A;  2O8A A;  3EGG A;  2CV9 A;  2XMO A;  4Q7F A;  3C5W C;  2KKN A;  3IVE A;  2O8G A;  1UTE A;  4HD0 A;  4I5N C;  4ORA A;  1II7 A;  3IVD A;  3PSN A;  1KBP A;  1JK7 A;  1NNW A;  2NYM C;  2QFR A;  4DT2 A;  1UF3 A;  2HY1 A;  2Q8U A;  5DNY A; 
#chains in the Genus database with same CATH topology
 3H63 A;  3H66 A;  3K7W C;  2NPP C;  1WAO 1;  5EQV A;  2DXN A;  4ZVZ A;  3V4Y A;  2DFJ A;  1USH A;  2IE4 C;  3RL4 A;  3QFK A;  3IB8 A;  4LU9 A;  4MOY A;  1U32 A;  4UT2 A;  1HPU A;  4DHL A;  3QG5 C;  4FBK A;  4UT3 A;  5JPF A;  3ZTV A;  3RQZ A;  1AUI A;  2IE3 C;  2WDD A;  3H69 A;  2WDE A;  3E0J A;  1G5B A;  3THN A;  3ZU0 A;  2NXF A;  3HVQ A;  3DSC A;  3C9F A;  4FBQ A;  3EGH A;  4H2G A;  3RL5 A;  4TUI A;  4TUG A;  2BDX A;  1S95 A;  3D03 A;  4O5G A;  2Z06 A;  3K7V C;  3E7B A;  4V0V A;  1OI8 A;  2BCD A;  2IAE C;  4O24 A;  1FJM A;  2ZBM A;  3E7A A;  4J6O A;  4JA9 A;  4XPN A;  5GTU A;  3GVE A;  1S3M A;  3FLO A;  4I5L C;  3H62 B;  2WDF A;  4IYP C;  2HYO A;  3QFO A;  2BQ8 X;  4G9J A;  4V0W A;  3TGH A;  5F3W A;  1OIE A;  2YVT A;  3H60 A;  3KBP A;  3N5U A;  3H67 A;  3QFN A;  4KKZ A;  4O43 A;  1W24 A;  4LAC C;  1HP1 A;  3RL3 A;  4OR9 A;  2HYP A;  5JJT A;  1T71 A;  4H2I A;  3THO B;  1S3L A;  2QFP A;  4KBP A;  3QFM A;  4FBW A;  5J28 A;  1SU1 A;  2USH A;  4ORC A;  4UT3 B;  4ORB A;  1Z2X A;  2A22 A;  4V0X A;  4B2O A;  3FGA C;  3LL8 A;  1XM7 A;  4F0Z A;  4H2F A;  5JPE A;  3ICF A;  1QHW A;  2R17 A;  4JA7 A;  1TCO A;  1T70 A;  4DSY A;  4IL1 A;  1M63 A;  4H1Y P;  4NZV A;  3AV0 A;  4UWQ A;  3H68 A;  1V73 A;  4ZX2 A;  2AHD A;  1OID A;  5INB A;  5C1V A;  2DXL A;  2JOG A;  5B8I A;  2WDC A;  1HO5 A;  3P71 C;  1S8E A;  3H64 A;  3DSD A;  3CK2 A;  4O4K A;  4FCX A;  1QFC A;  3T1I A;  1Z2W A;  2Z72 A;  1S70 A;  5IOH A;  2ZO9 B;  4M0V A;  3AUZ A;  2GJU A;  4H2B A;  4LTY A;  1WAR A;  3H61 A;  2NYL C;  1S3N A;  2P6B A;  2YEQ A;  3DW8 C;  1IT6 A;  2QJC A;  1MF8 A;  4MP0 A;  3IB7 A;  4MOV A;  4H1S A;  1XZW A;  3JYF A;  5HPE A;  4YKE A;  3PSO A;  4WWL A;  2Z1A A;  2O8A A;  3EGG A;  2CV9 A;  2XMO A;  4Q7F A;  2ZOA A;  3C5W C;  2KKN A;  3IVE A;  2O8G A;  1UTE A;  4HD0 A;  4I5N C;  4ORA A;  1II7 A;  3IVD A;  3PSN A;  1KBP A;  1JK7 A;  1NNW A;  2NYM C;  2QFR A;  4DT2 A;  1UF3 A;  2HY1 A;  2Q8U A;  5DNY A; 
#chains in the Genus database with same CATH homology
 3H63 A;  3H66 A;  3K7W C;  2NPP C;  1WAO 1;  5EQV A;  2DXN A;  4ZVZ A;  3V4Y A;  2DFJ A;  1USH A;  2IE4 C;  3RL4 A;  3QFK A;  3IB8 A;  4LU9 A;  4MOY A;  1U32 A;  4UT2 A;  1HPU A;  4DHL A;  3QG5 C;  4FBK A;  4UT3 A;  5JPF A;  3ZTV A;  3RQZ A;  1AUI A;  2IE3 C;  2WDD A;  3H69 A;  2WDE A;  3E0J A;  1G5B A;  3THN A;  3ZU0 A;  2NXF A;  3HVQ A;  3DSC A;  3C9F A;  4FBQ A;  3EGH A;  4H2G A;  3RL5 A;  4TUI A;  4TUG A;  2BDX A;  1S95 A;  3D03 A;  4O5G A;  2Z06 A;  3K7V C;  3E7B A;  4V0V A;  1OI8 A;  2BCD A;  2IAE C;  4O24 A;  1FJM A;  2ZBM A;  3E7A A;  4J6O A;  4JA9 A;  4XPN A;  5GTU A;  3GVE A;  1S3M A;  3FLO A;  4I5L C;  3H62 B;  2WDF A;  4IYP C;  2HYO A;  3QFO A;  2BQ8 X;  4G9J A;  4V0W A;  3TGH A;  5F3W A;  1OIE A;  2YVT A;  3H60 A;  3KBP A;  3N5U A;  3H67 A;  3QFN A;  4KKZ A;  4O43 A;  1W24 A;  4LAC C;  1HP1 A;  3RL3 A;  4OR9 A;  2HYP A;  5JJT A;  1T71 A;  4H2I A;  3THO B;  1S3L A;  2QFP A;  4KBP A;  3QFM A;  4FBW A;  5J28 A;  1SU1 A;  2USH A;  4ORC A;  4UT3 B;  4ORB A;  1Z2X A;  2A22 A;  4V0X A;  4B2O A;  3FGA C;  3LL8 A;  1XM7 A;  4F0Z A;  4H2F A;  5JPE A;  3ICF A;  1QHW A;  2R17 A;  4JA7 A;  1TCO A;  1T70 A;  4DSY A;  4IL1 A;  1M63 A;  4H1Y P;  4NZV A;  3AV0 A;  4UWQ A;  3H68 A;  1V73 A;  4ZX2 A;  2AHD A;  1OID A;  5INB A;  5C1V A;  2DXL A;  2JOG A;  5B8I A;  2WDC A;  1HO5 A;  3P71 C;  1S8E A;  3H64 A;  3DSD A;  3CK2 A;  4O4K A;  4FCX A;  1QFC A;  3T1I A;  1Z2W A;  2Z72 A;  1S70 A;  5IOH A;  2ZO9 B;  4M0V A;  3AUZ A;  2GJU A;  4H2B A;  4LTY A;  1WAR A;  3H61 A;  2NYL C;  1S3N A;  2P6B A;  2YEQ A;  3DW8 C;  1IT6 A;  2QJC A;  1MF8 A;  4MP0 A;  3IB7 A;  4MOV A;  4H1S A;  1XZW A;  3JYF A;  5HPE A;  4YKE A;  3PSO A;  4WWL A;  2Z1A A;  2O8A A;  3EGG A;  2CV9 A;  2XMO A;  4Q7F A;  2ZOA A;  3C5W C;  2KKN A;  3IVE A;  2O8G A;  1UTE A;  4HD0 A;  4I5N C;  4ORA A;  1II7 A;  3IVD A;  3PSN A;  1KBP A;  1JK7 A;  1NNW A;  2NYM C;  2QFR A;  4DT2 A;  1UF3 A;  2HY1 A;  2Q8U A;  5DNY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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