1Z2XA

Crystal structure of mouse vps29
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
pubmed doi rcsb
source organism Mus musculus
molecule tags Protein transport
molecule keywords Vacuolar protein sorting 29
total genus 48
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1z2xA00
4H2FA 3H60A 4TUIA 3C9FA 3H66A 2O8GA 5J28A 2P6BA 2AHDA 3FGAC 3LL8A 2WDEA 1TCOA 1S3LA 1W24A 1UTEA 4OR9A 3QFOA 3IVDA 2BQ8X 3H67A 4O24A 5IOHA 2NPPC 1OI8A 3H68A 4MOYA 2WDCA 3PSNA 3QFMA 3H62B 5INBA 4UWQA 4V0XA 3E7AA 2WDDA 2QFRA 1MF8A 3EGGA 3HVQA 4O43A 3RL4A 3AV0A 5JJTA 4MP0A 2NYMC 4I5LC 5HPEA 2O8AA 4G9JA 4NZVA 2CV9A 3QFNA 4H2IA 2BCDA 4ZVZA 3H61A 4Q7FA 4FCXA 4F0ZA 4M0VA 1HPUA 2QJCA 4J6OA 4ORAA 5GTUA 4O4KA 1SU1A 1Z2WA 3V4YA 4UT2A 1HO5A 3P71C 4FBWA 4H2BA 3TGHA 2QFPA 1WAO1 2YVTA 3ICFA 4V0WA 2KKNA 4KKZA 1QHWA 2XMOA 3N5UA 2HYPA 3T1IA 1S3MA 3ZU0A 1G5BA 3DW8C 3THNA 5JPFA 4UT3B 5C1VA 2R17A 4H1SA 4ZX2A 1S70A 3CK2A 4JA7A 3H63A 3KBPA 3ZTVA 2Z06A 3JYFA 2IE3C 4O5GA 4LACC 3K7WC 1S8EA 3E7BA 3IB8A 2IAEC 2BDXA 2Z1AA 3GVEA 1AUIA 3DSCA 2DFJA 1NNWA 4FBKA 3IB7A 1WARA 4XPNA 4B2OA 1HP1A 5F3WA 3RL5A 1V73A 4IL1A 5EQVA 1S95A 1USHA 2IE4C 4KBPA 1T70A 4FBQA 3K7VC 4H1YP 4HD0A 1UF3A 1XZWA 1QFCA 2A22A 4DHLA 4LTYA 3EGHA 4JA9A 1M63A 2NYLC 1IT6A 4ORBA 3DSDA 1T71A 4IYPC 2NXFA 2WDFA 1Z2XA 3H69A 4DSYA 5DNYA 1OIDA 1S3NA 4V0VA 1II7A 1OIEA 2USHA 4WWLA 3THOB 5JPEA 1KBPA 4LU9A 3AUZA 2GJUA 3QFKA 3RL3A 1U32A 2HYOA 3H64A 2HY1A 2Z72A 1JK7A 2JOGA 4H2GA 5B8IA 2Q8UA 4MOVA 1FJMA 4I5NC 3IVEA 4YKEA 3RQZA 4DT2A 3PSOA 4UT3A 2ZBMA 4ORCA 1XM7A 3C5WC 3QG5C 4TUGA
chains in the Genus database with same CATH superfamily
4H2FA 3H60A 2DXNA 4TUIA 3C9FA 3H66A 2O8GA 5J28A 2P6BA 2AHDA 3FGAC 3LL8A 2WDEA 1TCOA 1S3LA 1W24A 1UTEA 4OR9A 2DXLA 3QFOA 3IVDA 2BQ8X 3H67A 4O24A 5IOHA 2NPPC 1OI8A 3H68A 4MOYA 2WDCA 3PSNA 3QFMA 3H62B 5INBA 4UWQA 4V0XA 3E7AA 2WDDA 2QFRA 1MF8A 3EGGA 3HVQA 4O43A 3RL4A 3AV0A 5JJTA 4MP0A 2NYMC 4I5LC 5HPEA 2O8AA 4G9JA 4NZVA 2CV9A 3QFNA 4H2IA 2BCDA 4ZVZA 3H61A 4Q7FA 4FCXA 4F0ZA 4M0VA 1HPUA 2QJCA 4J6OA 4ORAA 5GTUA 4O4KA 1SU1A 3D03A 1Z2WA 3V4YA 4UT2A 1HO5A 3P71C 4FBWA 4H2BA 3TGHA 2QFPA 1WAO1 2YVTA 3ICFA 4V0WA 2KKNA 4KKZA 1QHWA 2XMOA 3N5UA 2HYPA 3T1IA 1S3MA 3ZU0A 1G5BA 3DW8C 3THNA 5JPFA 4UT3B 5C1VA 2R17A 2ZOAA 4H1SA 4ZX2A 1S70A 2ZO9B 3CK2A 4JA7A 3H63A 3KBPA 3ZTVA 2Z06A 3JYFA 2IE3C 4O5GA 4LACC 3K7WC 1S8EA 3E7BA 3IB8A 2IAEC 2BDXA 2YEQA 2Z1AA 3GVEA 1AUIA 3DSCA 2DFJA 1NNWA 4FBKA 3IB7A 1WARA 4XPNA 4B2OA 1HP1A 5F3WA 3RL5A 1V73A 4IL1A 5EQVA 1S95A 1USHA 2IE4C 4KBPA 1T70A 4FBQA 3K7VC 4H1YP 4HD0A 1UF3A 1XZWA 1QFCA 2A22A 4DHLA 3FLOA 4LTYA 3EGHA 4JA9A 1M63A 2NYLC 1IT6A 4ORBA 3DSDA 1T71A 4IYPC 2NXFA 2WDFA 1Z2XA 3H69A 4DSYA 5DNYA 1OIDA 1S3NA 4V0VA 1II7A 1OIEA 2USHA 4WWLA 3THOB 5JPEA 1KBPA 4LU9A 3AUZA 2GJUA 3QFKA 3RL3A 1U32A 2HYOA 3E0JA 3H64A 2HY1A 2Z72A 1JK7A 2JOGA 4H2GA 5B8IA 2Q8UA 4MOVA 1FJMA 4I5NC 3IVEA 4YKEA 3RQZA 4DT2A 3PSOA 4UT3A 2ZBMA 4ORCA 1XM7A 3C5WC 3QG5C 4TUGA
chains in the Genus database with same CATH topology
4H2FA 3H60A 2DXNA 4TUIA 3C9FA 3H66A 2O8GA 5J28A 2P6BA 2AHDA 3FGAC 3LL8A 2WDEA 1TCOA 1S3LA 1W24A 1UTEA 4OR9A 2DXLA 3QFOA 3IVDA 2BQ8X 3H67A 4O24A 5IOHA 2NPPC 1OI8A 3H68A 4MOYA 2WDCA 3PSNA 3QFMA 3H62B 5INBA 4UWQA 4V0XA 3E7AA 2WDDA 2QFRA 1MF8A 3EGGA 3HVQA 4O43A 3RL4A 3AV0A 5JJTA 4MP0A 2NYMC 4I5LC 5HPEA 2O8AA 4G9JA 4NZVA 2CV9A 3QFNA 4H2IA 2BCDA 4ZVZA 3H61A 4Q7FA 4FCXA 4F0ZA 4M0VA 1HPUA 2QJCA 4J6OA 4ORAA 5GTUA 4O4KA 1SU1A 3D03A 1Z2WA 3V4YA 4UT2A 1HO5A 3P71C 4FBWA 4H2BA 3TGHA 2QFPA 1WAO1 2YVTA 3ICFA 4V0WA 2KKNA 4KKZA 1QHWA 2XMOA 3N5UA 2HYPA 3T1IA 1S3MA 3ZU0A 1G5BA 3DW8C 3THNA 5JPFA 4UT3B 5C1VA 2R17A 2ZOAA 4H1SA 4ZX2A 1S70A 2ZO9B 3CK2A 4JA7A 3H63A 3KBPA 3ZTVA 2Z06A 3JYFA 2IE3C 4O5GA 4LACC 3K7WC 1S8EA 3E7BA 3IB8A 2IAEC 2BDXA 2YEQA 2Z1AA 3GVEA 1AUIA 3DSCA 2DFJA 1NNWA 4FBKA 3IB7A 1WARA 4XPNA 4B2OA 1HP1A 5F3WA 3RL5A 1V73A 4IL1A 5EQVA 1S95A 1USHA 2IE4C 4KBPA 1T70A 4FBQA 3K7VC 4H1YP 4HD0A 1UF3A 1XZWA 1QFCA 2A22A 4DHLA 3FLOA 4LTYA 3EGHA 4JA9A 1M63A 2NYLC 1IT6A 4ORBA 3DSDA 1T71A 4IYPC 2NXFA 2WDFA 1Z2XA 3H69A 4DSYA 5DNYA 1OIDA 1S3NA 4V0VA 1II7A 1OIEA 2USHA 4WWLA 3THOB 5JPEA 1KBPA 4LU9A 3AUZA 2GJUA 3QFKA 3RL3A 1U32A 2HYOA 3E0JA 3H64A 2HY1A 2Z72A 1JK7A 2JOGA 4H2GA 5B8IA 2Q8UA 4MOVA 1FJMA 4I5NC 3IVEA 4YKEA 3RQZA 4DT2A 3PSOA 4UT3A 2ZBMA 4ORCA 1XM7A 3C5WC 3QG5C 4TUGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H2F A;  3H60 A;  4TUI A;  3C9F A;  3H66 A;  2O8G A;  5J28 A;  2P6B A;  2AHD A;  3FGA C;  3LL8 A;  2WDE A;  1TCO A;  1S3L A;  1W24 A;  1UTE A;  4OR9 A;  3QFO A;  3IVD A;  2BQ8 X;  3H67 A;  4O24 A;  5IOH A;  2NPP C;  1OI8 A;  3H68 A;  4MOY A;  2WDC A;  3PSN A;  3QFM A;  3H62 B;  5INB A;  4UWQ A;  4V0X A;  3E7A A;  2WDD A;  2QFR A;  1MF8 A;  3EGG A;  3HVQ A;  4O43 A;  3RL4 A;  3AV0 A;  5JJT A;  4MP0 A;  2NYM C;  4I5L C;  5HPE A;  2O8A A;  4G9J A;  4NZV A;  2CV9 A;  3QFN A;  4H2I A;  2BCD A;  4ZVZ A;  3H61 A;  4Q7F A;  4FCX A;  4F0Z A;  4M0V A;  1HPU A;  2QJC A;  4J6O A;  4ORA A;  5GTU A;  4O4K A;  1SU1 A;  1Z2W A;  3V4Y A;  4UT2 A;  1HO5 A;  3P71 C;  4FBW A;  4H2B A;  3TGH A;  2QFP A;  1WAO 1;  2YVT A;  3ICF A;  4V0W A;  2KKN A;  4KKZ A;  1QHW A;  2XMO A;  3N5U A;  2HYP A;  3T1I A;  1S3M A;  3ZU0 A;  1G5B A;  3DW8 C;  3THN A;  5JPF A;  4UT3 B;  5C1V A;  2R17 A;  4H1S A;  4ZX2 A;  1S70 A;  3CK2 A;  4JA7 A;  3H63 A;  3KBP A;  3ZTV A;  2Z06 A;  3JYF A;  2IE3 C;  4O5G A;  4LAC C;  3K7W C;  1S8E A;  3E7B A;  3IB8 A;  2IAE C;  2BDX A;  2Z1A A;  3GVE A;  1AUI A;  3DSC A;  2DFJ A;  1NNW A;  4FBK A;  3IB7 A;  1WAR A;  4XPN A;  4B2O A;  1HP1 A;  5F3W A;  3RL5 A;  1V73 A;  4IL1 A;  5EQV A;  1S95 A;  1USH A;  2IE4 C;  4KBP A;  1T70 A;  4FBQ A;  3K7V C;  4H1Y P;  4HD0 A;  1UF3 A;  1XZW A;  1QFC A;  2A22 A;  4DHL A;  4LTY A;  3EGH A;  4JA9 A;  1M63 A;  2NYL C;  1IT6 A;  4ORB A;  3DSD A;  1T71 A;  4IYP C;  2NXF A;  2WDF A;  1Z2X A;  3H69 A;  4DSY A;  5DNY A;  1OID A;  1S3N A;  4V0V A;  1II7 A;  1OIE A;  2USH A;  4WWL A;  3THO B;  5JPE A;  1KBP A;  4LU9 A;  3AUZ A;  2GJU A;  3QFK A;  3RL3 A;  1U32 A;  2HYO A;  3H64 A;  2HY1 A;  2Z72 A;  1JK7 A;  2JOG A;  4H2G A;  5B8I A;  2Q8U A;  4MOV A;  1FJM A;  4I5N C;  3IVE A;  4YKE A;  3RQZ A;  4DT2 A;  3PSO A;  4UT3 A;  2ZBM A;  4ORC A;  1XM7 A;  3C5W C;  3QG5 C;  4TUG A; 
#chains in the Genus database with same CATH topology
 4H2F A;  3H60 A;  2DXN A;  4TUI A;  3C9F A;  3H66 A;  2O8G A;  5J28 A;  2P6B A;  2AHD A;  3FGA C;  3LL8 A;  2WDE A;  1TCO A;  1S3L A;  1W24 A;  1UTE A;  4OR9 A;  2DXL A;  3QFO A;  3IVD A;  2BQ8 X;  3H67 A;  4O24 A;  5IOH A;  2NPP C;  1OI8 A;  3H68 A;  4MOY A;  2WDC A;  3PSN A;  3QFM A;  3H62 B;  5INB A;  4UWQ A;  4V0X A;  3E7A A;  2WDD A;  2QFR A;  1MF8 A;  3EGG A;  3HVQ A;  4O43 A;  3RL4 A;  3AV0 A;  5JJT A;  4MP0 A;  2NYM C;  4I5L C;  5HPE A;  2O8A A;  4G9J A;  4NZV A;  2CV9 A;  3QFN A;  4H2I A;  2BCD A;  4ZVZ A;  3H61 A;  4Q7F A;  4FCX A;  4F0Z A;  4M0V A;  1HPU A;  2QJC A;  4J6O A;  4ORA A;  5GTU A;  4O4K A;  1SU1 A;  3D03 A;  1Z2W A;  3V4Y A;  4UT2 A;  1HO5 A;  3P71 C;  4FBW A;  4H2B A;  3TGH A;  2QFP A;  1WAO 1;  2YVT A;  3ICF A;  4V0W A;  2KKN A;  4KKZ A;  1QHW A;  2XMO A;  3N5U A;  2HYP A;  3T1I A;  1S3M A;  3ZU0 A;  1G5B A;  3DW8 C;  3THN A;  5JPF A;  4UT3 B;  5C1V A;  2R17 A;  2ZOA A;  4H1S A;  4ZX2 A;  1S70 A;  2ZO9 B;  3CK2 A;  4JA7 A;  3H63 A;  3KBP A;  3ZTV A;  2Z06 A;  3JYF A;  2IE3 C;  4O5G A;  4LAC C;  3K7W C;  1S8E A;  3E7B A;  3IB8 A;  2IAE C;  2BDX A;  2YEQ A;  2Z1A A;  3GVE A;  1AUI A;  3DSC A;  2DFJ A;  1NNW A;  4FBK A;  3IB7 A;  1WAR A;  4XPN A;  4B2O A;  1HP1 A;  5F3W A;  3RL5 A;  1V73 A;  4IL1 A;  5EQV A;  1S95 A;  1USH A;  2IE4 C;  4KBP A;  1T70 A;  4FBQ A;  3K7V C;  4H1Y P;  4HD0 A;  1UF3 A;  1XZW A;  1QFC A;  2A22 A;  4DHL A;  3FLO A;  4LTY A;  3EGH A;  4JA9 A;  1M63 A;  2NYL C;  1IT6 A;  4ORB A;  3DSD A;  1T71 A;  4IYP C;  2NXF A;  2WDF A;  1Z2X A;  3H69 A;  4DSY A;  5DNY A;  1OID A;  1S3N A;  4V0V A;  1II7 A;  1OIE A;  2USH A;  4WWL A;  3THO B;  5JPE A;  1KBP A;  4LU9 A;  3AUZ A;  2GJU A;  3QFK A;  3RL3 A;  1U32 A;  2HYO A;  3E0J A;  3H64 A;  2HY1 A;  2Z72 A;  1JK7 A;  2JOG A;  4H2G A;  5B8I A;  2Q8U A;  4MOV A;  1FJM A;  4I5N C;  3IVE A;  4YKE A;  3RQZ A;  4DT2 A;  3PSO A;  4UT3 A;  2ZBM A;  4ORC A;  1XM7 A;  3C5W C;  3QG5 C;  4TUG A; 
#chains in the Genus database with same CATH homology
 4H2F A;  3H60 A;  2DXN A;  4TUI A;  3C9F A;  3H66 A;  2O8G A;  5J28 A;  2P6B A;  2AHD A;  3FGA C;  3LL8 A;  2WDE A;  1TCO A;  1S3L A;  1W24 A;  1UTE A;  4OR9 A;  2DXL A;  3QFO A;  3IVD A;  2BQ8 X;  3H67 A;  4O24 A;  5IOH A;  2NPP C;  1OI8 A;  3H68 A;  4MOY A;  2WDC A;  3PSN A;  3QFM A;  3H62 B;  5INB A;  4UWQ A;  4V0X A;  3E7A A;  2WDD A;  2QFR A;  1MF8 A;  3EGG A;  3HVQ A;  4O43 A;  3RL4 A;  3AV0 A;  5JJT A;  4MP0 A;  2NYM C;  4I5L C;  5HPE A;  2O8A A;  4G9J A;  4NZV A;  2CV9 A;  3QFN A;  4H2I A;  2BCD A;  4ZVZ A;  3H61 A;  4Q7F A;  4FCX A;  4F0Z A;  4M0V A;  1HPU A;  2QJC A;  4J6O A;  4ORA A;  5GTU A;  4O4K A;  1SU1 A;  3D03 A;  1Z2W A;  3V4Y A;  4UT2 A;  1HO5 A;  3P71 C;  4FBW A;  4H2B A;  3TGH A;  2QFP A;  1WAO 1;  2YVT A;  3ICF A;  4V0W A;  2KKN A;  4KKZ A;  1QHW A;  2XMO A;  3N5U A;  2HYP A;  3T1I A;  1S3M A;  3ZU0 A;  1G5B A;  3DW8 C;  3THN A;  5JPF A;  4UT3 B;  5C1V A;  2R17 A;  2ZOA A;  4H1S A;  4ZX2 A;  1S70 A;  2ZO9 B;  3CK2 A;  4JA7 A;  3H63 A;  3KBP A;  3ZTV A;  2Z06 A;  3JYF A;  2IE3 C;  4O5G A;  4LAC C;  3K7W C;  1S8E A;  3E7B A;  3IB8 A;  2IAE C;  2BDX A;  2YEQ A;  2Z1A A;  3GVE A;  1AUI A;  3DSC A;  2DFJ A;  1NNW A;  4FBK A;  3IB7 A;  1WAR A;  4XPN A;  4B2O A;  1HP1 A;  5F3W A;  3RL5 A;  1V73 A;  4IL1 A;  5EQV A;  1S95 A;  1USH A;  2IE4 C;  4KBP A;  1T70 A;  4FBQ A;  3K7V C;  4H1Y P;  4HD0 A;  1UF3 A;  1XZW A;  1QFC A;  2A22 A;  4DHL A;  3FLO A;  4LTY A;  3EGH A;  4JA9 A;  1M63 A;  2NYL C;  1IT6 A;  4ORB A;  3DSD A;  1T71 A;  4IYP C;  2NXF A;  2WDF A;  1Z2X A;  3H69 A;  4DSY A;  5DNY A;  1OID A;  1S3N A;  4V0V A;  1II7 A;  1OIE A;  2USH A;  4WWL A;  3THO B;  5JPE A;  1KBP A;  4LU9 A;  3AUZ A;  2GJU A;  3QFK A;  3RL3 A;  1U32 A;  2HYO A;  3E0J A;  3H64 A;  2HY1 A;  2Z72 A;  1JK7 A;  2JOG A;  4H2G A;  5B8I A;  2Q8U A;  4MOV A;  1FJM A;  4I5N C;  3IVE A;  4YKE A;  3RQZ A;  4DT2 A;  3PSO A;  4UT3 A;  2ZBM A;  4ORC A;  1XM7 A;  3C5W C;  3QG5 C;  4TUG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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