1Z2XA

Crystal structure of mouse vps29
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Vacuolar protein sorting 29
publication title Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
pubmed doi rcsb
source organism Mus musculus
molecule tags Protein transport
total genus 48
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1z2xA00
1S95A 4ORCA 4I5NC 5HPEA 5INBA 1HP1A 3H64A 2BQ8X 3KBPA 4J6OA 5B8IA 3QFKA 1II7A 3RQZA 3QFOA 2ZBMA 1G5BA 5C1VA 1Z2XA 2GJUA 2DFJA 3JYFA 3THNA 2NYLC 1OIEA 1S8EA 3IB8A 4DSYA 2Z1AA 2O8AA 5DNYA 3RL5A 2WDEA 3H69A 4ZX2A 1USHA 1NNWA 3EGGA 4DT2A 3P71C 3QG5C 2IAEC 5J28A 1M63A 4V0VA 3H60A 3E7BA 4DHLA 4F0ZA 3CK2A 4IL1A 4UT3A 1T71A 2WDDA 4LACC 5JPFA 2QJCA 4TUGA 3DSDA 3DSCA 2WDFA 3V4YA 4HD0A 3T1IA 4XPNA 4TUIA 2KKNA 4LU9A 4V0XA 2NXFA 2P6BA 1V73A 4IYPC 1UF3A 2IE3C 4JA7A 1HO5A 4M0VA 4ORAA 2Q8UA 2HY1A 3THOB 3ZU0A 1FJMA 1S3NA 1WARA 3ICFA 4MOVA 3TGHA 3AV0A 4H2IA 1HPUA 4UWQA 1IT6A 1T70A 2IE4C 5JPEA 3C9FA 3RL4A 3DW8C 3QFMA 1KBPA 3E7AA 4H2GA 4B2OA 4H1YP 1WAO1 5F3WA 2HYPA 3H67A 1S70A 4UT2A 2NYMC 2A22A 3H66A 1S3LA 4O5GA 5GTUA 4WWLA 3H61A 2R17A 2HYOA 4FBWA 5EQVA 3H63A 3K7VC 1TCOA 2Z06A 3QFNA 2BDXA 1AUIA 2JOGA 1SU1A 3PSNA 4H1SA 4YKEA 3IVDA 3ZTVA 4KKZA 2QFPA 4O24A 4MP0A 1S3MA 1OI8A 2BCDA 3N5UA 4V0WA 4UT3B 3RL3A 4ZVZA 5IOHA 1OIDA 4G9JA 4JA9A 4FBKA 2YVTA 3IVEA 3LL8A 4KBPA 3GVEA 2USHA 1UTEA 4O4KA 2Z72A 2AHDA 3EGHA 3FGAC 1QHWA 2WDCA 3IB7A 3C5WC 3H62B 4LTYA 4MOYA 3K7WC 1W24A 1Z2WA 3HVQA 3PSOA 4O43A 1QFCA 4FBQA 4I5LC 1JK7A 5JJTA 4H2FA 1XZWA 3H68A 2QFRA 3AUZA 4FCXA 1MF8A 4OR9A 4Q7FA 4ORBA 4NZVA 1U32A 1XM7A 4H2BA 2O8GA 2NPPC 2XMOA 2CV9A
chains in the Genus database with same CATH superfamily
1S95A 4ORCA 4I5NC 5HPEA 3FLOA 5INBA 1HP1A 3H64A 2BQ8X 3KBPA 4J6OA 5B8IA 3QFKA 1II7A 3RQZA 3QFOA 2ZBMA 1G5BA 5C1VA 1Z2XA 2GJUA 2DFJA 3JYFA 3THNA 2NYLC 1OIEA 1S8EA 3IB8A 4DSYA 2Z1AA 2O8AA 5DNYA 2ZOAA 3RL5A 2WDEA 3H69A 4ZX2A 1USHA 1NNWA 3EGGA 4DT2A 3P71C 3QG5C 2IAEC 5J28A 2DXLA 1M63A 4V0VA 3H60A 3E7BA 4DHLA 4F0ZA 3CK2A 4IL1A 4UT3A 1T71A 2WDDA 4LACC 5JPFA 2QJCA 4TUGA 3DSDA 3DSCA 2WDFA 3V4YA 4HD0A 2ZO9B 3T1IA 4XPNA 4TUIA 2KKNA 4LU9A 4V0XA 2NXFA 2P6BA 1V73A 4IYPC 1UF3A 2IE3C 4JA7A 1HO5A 4M0VA 4ORAA 2Q8UA 2HY1A 3THOB 3ZU0A 2DXNA 1FJMA 1S3NA 1WARA 3ICFA 4MOVA 3TGHA 3AV0A 4H2IA 1HPUA 4UWQA 1IT6A 1T70A 2IE4C 5JPEA 3C9FA 3RL4A 3DW8C 3QFMA 1KBPA 3E7AA 4H2GA 4B2OA 4H1YP 1WAO1 5F3WA 2HYPA 3H67A 1S70A 4UT2A 2NYMC 2A22A 3H66A 1S3LA 4O5GA 5GTUA 4WWLA 3H61A 2R17A 2HYOA 4FBWA 5EQVA 3H63A 3K7VC 1TCOA 2Z06A 3QFNA 2BDXA 1AUIA 2JOGA 1SU1A 3PSNA 4H1SA 4YKEA 3IVDA 3ZTVA 4KKZA 2QFPA 4O24A 4MP0A 1S3MA 1OI8A 3E0JA 2BCDA 3N5UA 4V0WA 4UT3B 3RL3A 4ZVZA 5IOHA 1OIDA 4G9JA 4JA9A 4FBKA 2YVTA 3IVEA 3LL8A 4KBPA 3GVEA 2USHA 1UTEA 4O4KA 2Z72A 2AHDA 3EGHA 3FGAC 1QHWA 2WDCA 3IB7A 3C5WC 3H62B 4LTYA 4MOYA 3K7WC 1W24A 1Z2WA 3HVQA 3PSOA 2YEQA 4O43A 1QFCA 4FBQA 3D03A 4I5LC 1JK7A 5JJTA 4H2FA 1XZWA 3H68A 2QFRA 3AUZA 4FCXA 1MF8A 4OR9A 4Q7FA 4ORBA 4NZVA 1U32A 1XM7A 4H2BA 2O8GA 2NPPC 2XMOA 2CV9A
chains in the Genus database with same CATH topology
1S95A 4ORCA 4I5NC 5HPEA 3FLOA 5INBA 1HP1A 3H64A 2BQ8X 3KBPA 4J6OA 5B8IA 3QFKA 1II7A 3RQZA 3QFOA 2ZBMA 1G5BA 5C1VA 1Z2XA 2GJUA 2DFJA 3JYFA 3THNA 2NYLC 1OIEA 1S8EA 3IB8A 4DSYA 2Z1AA 2O8AA 5DNYA 2ZOAA 3RL5A 2WDEA 3H69A 4ZX2A 1USHA 1NNWA 3EGGA 4DT2A 3P71C 3QG5C 2IAEC 5J28A 2DXLA 1M63A 4V0VA 3H60A 3E7BA 4DHLA 4F0ZA 3CK2A 4IL1A 4UT3A 1T71A 2WDDA 4LACC 5JPFA 2QJCA 4TUGA 3DSDA 3DSCA 2WDFA 3V4YA 4HD0A 2ZO9B 3T1IA 4XPNA 4TUIA 2KKNA 4LU9A 4V0XA 2NXFA 2P6BA 1V73A 4IYPC 1UF3A 2IE3C 4JA7A 1HO5A 4M0VA 4ORAA 2Q8UA 2HY1A 3THOB 3ZU0A 2DXNA 1FJMA 1S3NA 1WARA 3ICFA 4MOVA 3TGHA 3AV0A 4H2IA 1HPUA 4UWQA 1IT6A 1T70A 2IE4C 5JPEA 3C9FA 3RL4A 3DW8C 3QFMA 1KBPA 3E7AA 4H2GA 4B2OA 4H1YP 1WAO1 5F3WA 2HYPA 3H67A 1S70A 4UT2A 2NYMC 2A22A 3H66A 1S3LA 4O5GA 5GTUA 4WWLA 3H61A 2R17A 2HYOA 4FBWA 5EQVA 3H63A 3K7VC 1TCOA 2Z06A 3QFNA 2BDXA 1AUIA 2JOGA 1SU1A 3PSNA 4H1SA 4YKEA 3IVDA 3ZTVA 4KKZA 2QFPA 4O24A 4MP0A 1S3MA 1OI8A 3E0JA 2BCDA 3N5UA 4V0WA 4UT3B 3RL3A 4ZVZA 5IOHA 1OIDA 4G9JA 4JA9A 4FBKA 2YVTA 3IVEA 3LL8A 4KBPA 3GVEA 2USHA 1UTEA 4O4KA 2Z72A 2AHDA 3EGHA 3FGAC 1QHWA 2WDCA 3IB7A 3C5WC 3H62B 4LTYA 4MOYA 3K7WC 1W24A 1Z2WA 3HVQA 3PSOA 2YEQA 4O43A 1QFCA 4FBQA 3D03A 4I5LC 1JK7A 5JJTA 4H2FA 1XZWA 3H68A 2QFRA 3AUZA 4FCXA 1MF8A 4OR9A 4Q7FA 4ORBA 4NZVA 1U32A 1XM7A 4H2BA 2O8GA 2NPPC 2XMOA 2CV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S95 A;  4ORC A;  4I5N C;  5HPE A;  5INB A;  1HP1 A;  3H64 A;  2BQ8 X;  3KBP A;  4J6O A;  5B8I A;  3QFK A;  1II7 A;  3RQZ A;  3QFO A;  2ZBM A;  1G5B A;  5C1V A;  1Z2X A;  2GJU A;  2DFJ A;  3JYF A;  3THN A;  2NYL C;  1OIE A;  1S8E A;  3IB8 A;  4DSY A;  2Z1A A;  2O8A A;  5DNY A;  3RL5 A;  2WDE A;  3H69 A;  4ZX2 A;  1USH A;  1NNW A;  3EGG A;  4DT2 A;  3P71 C;  3QG5 C;  2IAE C;  5J28 A;  1M63 A;  4V0V A;  3H60 A;  3E7B A;  4DHL A;  4F0Z A;  3CK2 A;  4IL1 A;  4UT3 A;  1T71 A;  2WDD A;  4LAC C;  5JPF A;  2QJC A;  4TUG A;  3DSD A;  3DSC A;  2WDF A;  3V4Y A;  4HD0 A;  3T1I A;  4XPN A;  4TUI A;  2KKN A;  4LU9 A;  4V0X A;  2NXF A;  2P6B A;  1V73 A;  4IYP C;  1UF3 A;  2IE3 C;  4JA7 A;  1HO5 A;  4M0V A;  4ORA A;  2Q8U A;  2HY1 A;  3THO B;  3ZU0 A;  1FJM A;  1S3N A;  1WAR A;  3ICF A;  4MOV A;  3TGH A;  3AV0 A;  4H2I A;  1HPU A;  4UWQ A;  1IT6 A;  1T70 A;  2IE4 C;  5JPE A;  3C9F A;  3RL4 A;  3DW8 C;  3QFM A;  1KBP A;  3E7A A;  4H2G A;  4B2O A;  4H1Y P;  1WAO 1;  5F3W A;  2HYP A;  3H67 A;  1S70 A;  4UT2 A;  2NYM C;  2A22 A;  3H66 A;  1S3L A;  4O5G A;  5GTU A;  4WWL A;  3H61 A;  2R17 A;  2HYO A;  4FBW A;  5EQV A;  3H63 A;  3K7V C;  1TCO A;  2Z06 A;  3QFN A;  2BDX A;  1AUI A;  2JOG A;  1SU1 A;  3PSN A;  4H1S A;  4YKE A;  3IVD A;  3ZTV A;  4KKZ A;  2QFP A;  4O24 A;  4MP0 A;  1S3M A;  1OI8 A;  2BCD A;  3N5U A;  4V0W A;  4UT3 B;  3RL3 A;  4ZVZ A;  5IOH A;  1OID A;  4G9J A;  4JA9 A;  4FBK A;  2YVT A;  3IVE A;  3LL8 A;  4KBP A;  3GVE A;  2USH A;  1UTE A;  4O4K A;  2Z72 A;  2AHD A;  3EGH A;  3FGA C;  1QHW A;  2WDC A;  3IB7 A;  3C5W C;  3H62 B;  4LTY A;  4MOY A;  3K7W C;  1W24 A;  1Z2W A;  3HVQ A;  3PSO A;  4O43 A;  1QFC A;  4FBQ A;  4I5L C;  1JK7 A;  5JJT A;  4H2F A;  1XZW A;  3H68 A;  2QFR A;  3AUZ A;  4FCX A;  1MF8 A;  4OR9 A;  4Q7F A;  4ORB A;  4NZV A;  1U32 A;  1XM7 A;  4H2B A;  2O8G A;  2NPP C;  2XMO A;  2CV9 A; 
#chains in the Genus database with same CATH topology
 1S95 A;  4ORC A;  4I5N C;  5HPE A;  3FLO A;  5INB A;  1HP1 A;  3H64 A;  2BQ8 X;  3KBP A;  4J6O A;  5B8I A;  3QFK A;  1II7 A;  3RQZ A;  3QFO A;  2ZBM A;  1G5B A;  5C1V A;  1Z2X A;  2GJU A;  2DFJ A;  3JYF A;  3THN A;  2NYL C;  1OIE A;  1S8E A;  3IB8 A;  4DSY A;  2Z1A A;  2O8A A;  5DNY A;  2ZOA A;  3RL5 A;  2WDE A;  3H69 A;  4ZX2 A;  1USH A;  1NNW A;  3EGG A;  4DT2 A;  3P71 C;  3QG5 C;  2IAE C;  5J28 A;  2DXL A;  1M63 A;  4V0V A;  3H60 A;  3E7B A;  4DHL A;  4F0Z A;  3CK2 A;  4IL1 A;  4UT3 A;  1T71 A;  2WDD A;  4LAC C;  5JPF A;  2QJC A;  4TUG A;  3DSD A;  3DSC A;  2WDF A;  3V4Y A;  4HD0 A;  2ZO9 B;  3T1I A;  4XPN A;  4TUI A;  2KKN A;  4LU9 A;  4V0X A;  2NXF A;  2P6B A;  1V73 A;  4IYP C;  1UF3 A;  2IE3 C;  4JA7 A;  1HO5 A;  4M0V A;  4ORA A;  2Q8U A;  2HY1 A;  3THO B;  3ZU0 A;  2DXN A;  1FJM A;  1S3N A;  1WAR A;  3ICF A;  4MOV A;  3TGH A;  3AV0 A;  4H2I A;  1HPU A;  4UWQ A;  1IT6 A;  1T70 A;  2IE4 C;  5JPE A;  3C9F A;  3RL4 A;  3DW8 C;  3QFM A;  1KBP A;  3E7A A;  4H2G A;  4B2O A;  4H1Y P;  1WAO 1;  5F3W A;  2HYP A;  3H67 A;  1S70 A;  4UT2 A;  2NYM C;  2A22 A;  3H66 A;  1S3L A;  4O5G A;  5GTU A;  4WWL A;  3H61 A;  2R17 A;  2HYO A;  4FBW A;  5EQV A;  3H63 A;  3K7V C;  1TCO A;  2Z06 A;  3QFN A;  2BDX A;  1AUI A;  2JOG A;  1SU1 A;  3PSN A;  4H1S A;  4YKE A;  3IVD A;  3ZTV A;  4KKZ A;  2QFP A;  4O24 A;  4MP0 A;  1S3M A;  1OI8 A;  3E0J A;  2BCD A;  3N5U A;  4V0W A;  4UT3 B;  3RL3 A;  4ZVZ A;  5IOH A;  1OID A;  4G9J A;  4JA9 A;  4FBK A;  2YVT A;  3IVE A;  3LL8 A;  4KBP A;  3GVE A;  2USH A;  1UTE A;  4O4K A;  2Z72 A;  2AHD A;  3EGH A;  3FGA C;  1QHW A;  2WDC A;  3IB7 A;  3C5W C;  3H62 B;  4LTY A;  4MOY A;  3K7W C;  1W24 A;  1Z2W A;  3HVQ A;  3PSO A;  2YEQ A;  4O43 A;  1QFC A;  4FBQ A;  3D03 A;  4I5L C;  1JK7 A;  5JJT A;  4H2F A;  1XZW A;  3H68 A;  2QFR A;  3AUZ A;  4FCX A;  1MF8 A;  4OR9 A;  4Q7F A;  4ORB A;  4NZV A;  1U32 A;  1XM7 A;  4H2B A;  2O8G A;  2NPP C;  2XMO A;  2CV9 A; 
#chains in the Genus database with same CATH homology
 1S95 A;  4ORC A;  4I5N C;  5HPE A;  3FLO A;  5INB A;  1HP1 A;  3H64 A;  2BQ8 X;  3KBP A;  4J6O A;  5B8I A;  3QFK A;  1II7 A;  3RQZ A;  3QFO A;  2ZBM A;  1G5B A;  5C1V A;  1Z2X A;  2GJU A;  2DFJ A;  3JYF A;  3THN A;  2NYL C;  1OIE A;  1S8E A;  3IB8 A;  4DSY A;  2Z1A A;  2O8A A;  5DNY A;  2ZOA A;  3RL5 A;  2WDE A;  3H69 A;  4ZX2 A;  1USH A;  1NNW A;  3EGG A;  4DT2 A;  3P71 C;  3QG5 C;  2IAE C;  5J28 A;  2DXL A;  1M63 A;  4V0V A;  3H60 A;  3E7B A;  4DHL A;  4F0Z A;  3CK2 A;  4IL1 A;  4UT3 A;  1T71 A;  2WDD A;  4LAC C;  5JPF A;  2QJC A;  4TUG A;  3DSD A;  3DSC A;  2WDF A;  3V4Y A;  4HD0 A;  2ZO9 B;  3T1I A;  4XPN A;  4TUI A;  2KKN A;  4LU9 A;  4V0X A;  2NXF A;  2P6B A;  1V73 A;  4IYP C;  1UF3 A;  2IE3 C;  4JA7 A;  1HO5 A;  4M0V A;  4ORA A;  2Q8U A;  2HY1 A;  3THO B;  3ZU0 A;  2DXN A;  1FJM A;  1S3N A;  1WAR A;  3ICF A;  4MOV A;  3TGH A;  3AV0 A;  4H2I A;  1HPU A;  4UWQ A;  1IT6 A;  1T70 A;  2IE4 C;  5JPE A;  3C9F A;  3RL4 A;  3DW8 C;  3QFM A;  1KBP A;  3E7A A;  4H2G A;  4B2O A;  4H1Y P;  1WAO 1;  5F3W A;  2HYP A;  3H67 A;  1S70 A;  4UT2 A;  2NYM C;  2A22 A;  3H66 A;  1S3L A;  4O5G A;  5GTU A;  4WWL A;  3H61 A;  2R17 A;  2HYO A;  4FBW A;  5EQV A;  3H63 A;  3K7V C;  1TCO A;  2Z06 A;  3QFN A;  2BDX A;  1AUI A;  2JOG A;  1SU1 A;  3PSN A;  4H1S A;  4YKE A;  3IVD A;  3ZTV A;  4KKZ A;  2QFP A;  4O24 A;  4MP0 A;  1S3M A;  1OI8 A;  3E0J A;  2BCD A;  3N5U A;  4V0W A;  4UT3 B;  3RL3 A;  4ZVZ A;  5IOH A;  1OID A;  4G9J A;  4JA9 A;  4FBK A;  2YVT A;  3IVE A;  3LL8 A;  4KBP A;  3GVE A;  2USH A;  1UTE A;  4O4K A;  2Z72 A;  2AHD A;  3EGH A;  3FGA C;  1QHW A;  2WDC A;  3IB7 A;  3C5W C;  3H62 B;  4LTY A;  4MOY A;  3K7W C;  1W24 A;  1Z2W A;  3HVQ A;  3PSO A;  2YEQ A;  4O43 A;  1QFC A;  4FBQ A;  3D03 A;  4I5L C;  1JK7 A;  5JJT A;  4H2F A;  1XZW A;  3H68 A;  2QFR A;  3AUZ A;  4FCX A;  1MF8 A;  4OR9 A;  4Q7F A;  4ORB A;  4NZV A;  1U32 A;  1XM7 A;  4H2B A;  2O8G A;  2NPP C;  2XMO A;  2CV9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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