1Z2XA

Crystal structure of mouse vps29
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
pubmed doi rcsb
source organism Mus musculus
molecule tags Protein transport
molecule keywords Vacuolar protein sorting 29
total genus 48
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1z2xA00
1QFCA 2R17A 2NXFA 3RL4A 3E7BA 4UT3A 1V73A 1G5BA 3RQZA 1UF3A 5C1VA 4H1SA 1HO5A 3H64A 5HPEA 2DFJA 1T71A 4TUIA 1UTEA 3RL5A 3QG5C 1XM7A 4V0WA 5JPFA 2AHDA 1XZWA 1USHA 4KBPA 2Z1AA 4MOYA 4B2OA 2HYPA 4G9JA 2GJUA 4I5LC 4WWLA 4H2BA 1NNWA 4Q7FA 1FJMA 4I5NC 2IAEC 1WAO1 1IT6A 4FBKA 2YVTA 3IB7A 3H60A 1SU1A 4M0VA 1II7A 4KKZA 2O8AA 2ZBMA 4H2IA 1OIEA 3H67A 3H69A 4H2FA 2QFRA 2QJCA 2WDFA 1S70A 2BQ8X 2USHA 2HY1A 3HVQA 4LACC 4O24A 4O43A 4F0ZA 5J28A 1OI8A 1TCOA 2NPPC 2O8GA 4O5GA 3DSDA 1QHWA 3V4YA 4DSYA 4V0XA 5DNYA 2NYLC 3AV0A 3P71C 4NZVA 4JA9A 4LTYA 2NYMC 1M63A 3LL8A 5GTUA 4LU9A 4IYPC 4UT3B 3CK2A 1WARA 3THOB 4H2GA 2CV9A 4JA7A 2Q8UA 2BDXA 3PSOA 4J6OA 3H63A 5B8IA 1W24A 2HYOA 2JOGA 3DW8C 1Z2WA 3K7VC 4ZX2A 3EGGA 3H61A 5IOHA 1S3LA 1U32A 3T1IA 3EGHA 3H68A 1S3MA 1S8EA 3IB8A 4OR9A 5JJTA 3E7AA 2QFPA 3C5WC 1S3NA 2XMOA 4MOVA 3QFMA 3ZU0A 4HD0A 4ORAA 2WDCA 5JPEA 5F3WA 4YKEA 3GVEA 3IVDA 2WDDA 1KBPA 2KKNA 4DHLA 3H62B 4TUGA 3ICFA 2P6BA 5EQVA 3QFOA 5INBA 1JK7A 3K7WC 3QFKA 4ORCA 4XPNA 4V0VA 2IE3C 2Z72A 3TGHA 3DSCA 4UT2A 4ZVZA 1MF8A 4DT2A 3KBPA 4FBWA 3PSNA 1OIDA 3IVEA 3FGAC 1S95A 2WDEA 2BCDA 3AUZA 1HP1A 3JYFA 2A22A 1Z2XA 3ZTVA 3C9FA 3THNA 3QFNA 4ORBA 3N5UA 2IE4C 1T70A 4MP0A 4FCXA 3H66A 4IL1A 1AUIA 3RL3A 2Z06A 4O4KA 4FBQA 4UWQA 4H1YP 1HPUA
chains in the Genus database with same CATH superfamily
1QFCA 2R17A 2NXFA 3RL4A 3E7BA 4UT3A 1V73A 1G5BA 3RQZA 1UF3A 5C1VA 4H1SA 1HO5A 3H64A 5HPEA 2DFJA 1T71A 4TUIA 1UTEA 3FLOA 3RL5A 3QG5C 1XM7A 4V0WA 5JPFA 2AHDA 1XZWA 1USHA 4KBPA 2Z1AA 3D03A 4MOYA 4B2OA 2HYPA 4G9JA 2GJUA 4I5LC 4WWLA 4H2BA 1NNWA 4Q7FA 1FJMA 4I5NC 2IAEC 1WAO1 1IT6A 4FBKA 2YVTA 3IB7A 3H60A 1SU1A 4M0VA 1II7A 4KKZA 2O8AA 2ZBMA 4H2IA 1OIEA 3H67A 3H69A 4H2FA 2QFRA 2QJCA 2WDFA 1S70A 2BQ8X 2USHA 2HY1A 3HVQA 4LACC 4O24A 4O43A 4F0ZA 5J28A 1OI8A 1TCOA 2NPPC 2O8GA 4O5GA 3DSDA 1QHWA 3V4YA 4DSYA 4V0XA 5DNYA 2NYLC 3AV0A 3P71C 4NZVA 4JA9A 4LTYA 2NYMC 1M63A 3LL8A 5GTUA 4LU9A 4IYPC 4UT3B 3CK2A 1WARA 3THOB 4H2GA 2CV9A 4JA7A 2DXLA 2DXNA 2Q8UA 2BDXA 3PSOA 4J6OA 3H63A 5B8IA 1W24A 2HYOA 2JOGA 3DW8C 1Z2WA 3K7VC 4ZX2A 3EGGA 3H61A 5IOHA 1S3LA 1U32A 3T1IA 3EGHA 3H68A 1S3MA 1S8EA 3IB8A 4OR9A 5JJTA 3E7AA 2QFPA 3C5WC 1S3NA 2XMOA 2YEQA 3QFMA 4MOVA 3ZU0A 4HD0A 4ORAA 2WDCA 5JPEA 5F3WA 4YKEA 3GVEA 3IVDA 2WDDA 1KBPA 2KKNA 4DHLA 3H62B 4TUGA 3ICFA 3E0JA 2P6BA 5EQVA 3QFOA 5INBA 1JK7A 3K7WC 3QFKA 4ORCA 4XPNA 4V0VA 2IE3C 2Z72A 3TGHA 3DSCA 4UT2A 4ZVZA 1MF8A 4DT2A 3KBPA 4FBWA 3PSNA 1OIDA 3IVEA 3FGAC 1S95A 2WDEA 2BCDA 3AUZA 1HP1A 3JYFA 2A22A 1Z2XA 3ZTVA 3C9FA 3THNA 3QFNA 2ZOAA 4ORBA 3N5UA 2IE4C 1T70A 4MP0A 4FCXA 3H66A 4IL1A 1AUIA 3RL3A 2Z06A 2ZO9B 4O4KA 4FBQA 4UWQA 4H1YP 1HPUA
chains in the Genus database with same CATH topology
1QFCA 2R17A 2NXFA 3RL4A 3E7BA 4UT3A 1V73A 1G5BA 3RQZA 1UF3A 5C1VA 4H1SA 1HO5A 3H64A 5HPEA 2DFJA 1T71A 4TUIA 1UTEA 3FLOA 3RL5A 3QG5C 1XM7A 4V0WA 5JPFA 2AHDA 1XZWA 1USHA 4KBPA 2Z1AA 3D03A 4MOYA 4B2OA 2HYPA 4G9JA 2GJUA 4I5LC 4WWLA 4H2BA 1NNWA 4Q7FA 1FJMA 4I5NC 2IAEC 1WAO1 1IT6A 4FBKA 2YVTA 3IB7A 3H60A 1SU1A 4M0VA 1II7A 4KKZA 2O8AA 2ZBMA 4H2IA 1OIEA 3H67A 3H69A 4H2FA 2QFRA 2QJCA 2WDFA 1S70A 2BQ8X 2USHA 2HY1A 3HVQA 4LACC 4O24A 4O43A 4F0ZA 5J28A 1OI8A 1TCOA 2NPPC 2O8GA 4O5GA 3DSDA 1QHWA 3V4YA 4DSYA 4V0XA 5DNYA 2NYLC 3AV0A 3P71C 4NZVA 4JA9A 4LTYA 2NYMC 1M63A 3LL8A 5GTUA 4LU9A 4IYPC 4UT3B 3CK2A 1WARA 3THOB 4H2GA 2CV9A 4JA7A 2DXLA 2DXNA 2Q8UA 2BDXA 3PSOA 4J6OA 3H63A 5B8IA 1W24A 2HYOA 2JOGA 3DW8C 1Z2WA 3K7VC 4ZX2A 3EGGA 3H61A 5IOHA 1S3LA 1U32A 3T1IA 3EGHA 3H68A 1S3MA 1S8EA 3IB8A 4OR9A 5JJTA 3E7AA 2QFPA 3C5WC 1S3NA 2XMOA 2YEQA 3QFMA 4MOVA 3ZU0A 4HD0A 4ORAA 2WDCA 5JPEA 5F3WA 4YKEA 3GVEA 3IVDA 2WDDA 1KBPA 2KKNA 4DHLA 3H62B 4TUGA 3ICFA 3E0JA 2P6BA 5EQVA 3QFOA 5INBA 1JK7A 3K7WC 3QFKA 4ORCA 4XPNA 4V0VA 2IE3C 2Z72A 3TGHA 3DSCA 4UT2A 4ZVZA 1MF8A 4DT2A 3KBPA 4FBWA 3PSNA 1OIDA 3IVEA 3FGAC 1S95A 2WDEA 2BCDA 3AUZA 1HP1A 3JYFA 2A22A 1Z2XA 3ZTVA 3C9FA 3THNA 3QFNA 2ZOAA 4ORBA 3N5UA 2IE4C 1T70A 4MP0A 4FCXA 3H66A 4IL1A 1AUIA 3RL3A 2Z06A 2ZO9B 4O4KA 4FBQA 4UWQA 4H1YP 1HPUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QFC A;  2R17 A;  2NXF A;  3RL4 A;  3E7B A;  4UT3 A;  1V73 A;  1G5B A;  3RQZ A;  1UF3 A;  5C1V A;  4H1S A;  1HO5 A;  3H64 A;  5HPE A;  2DFJ A;  1T71 A;  4TUI A;  1UTE A;  3RL5 A;  3QG5 C;  1XM7 A;  4V0W A;  5JPF A;  2AHD A;  1XZW A;  1USH A;  4KBP A;  2Z1A A;  4MOY A;  4B2O A;  2HYP A;  4G9J A;  2GJU A;  4I5L C;  4WWL A;  4H2B A;  1NNW A;  4Q7F A;  1FJM A;  4I5N C;  2IAE C;  1WAO 1;  1IT6 A;  4FBK A;  2YVT A;  3IB7 A;  3H60 A;  1SU1 A;  4M0V A;  1II7 A;  4KKZ A;  2O8A A;  2ZBM A;  4H2I A;  1OIE A;  3H67 A;  3H69 A;  4H2F A;  2QFR A;  2QJC A;  2WDF A;  1S70 A;  2BQ8 X;  2USH A;  2HY1 A;  3HVQ A;  4LAC C;  4O24 A;  4O43 A;  4F0Z A;  5J28 A;  1OI8 A;  1TCO A;  2NPP C;  2O8G A;  4O5G A;  3DSD A;  1QHW A;  3V4Y A;  4DSY A;  4V0X A;  5DNY A;  2NYL C;  3AV0 A;  3P71 C;  4NZV A;  4JA9 A;  4LTY A;  2NYM C;  1M63 A;  3LL8 A;  5GTU A;  4LU9 A;  4IYP C;  4UT3 B;  3CK2 A;  1WAR A;  3THO B;  4H2G A;  2CV9 A;  4JA7 A;  2Q8U A;  2BDX A;  3PSO A;  4J6O A;  3H63 A;  5B8I A;  1W24 A;  2HYO A;  2JOG A;  3DW8 C;  1Z2W A;  3K7V C;  4ZX2 A;  3EGG A;  3H61 A;  5IOH A;  1S3L A;  1U32 A;  3T1I A;  3EGH A;  3H68 A;  1S3M A;  1S8E A;  3IB8 A;  4OR9 A;  5JJT A;  3E7A A;  2QFP A;  3C5W C;  1S3N A;  2XMO A;  4MOV A;  3QFM A;  3ZU0 A;  4HD0 A;  4ORA A;  2WDC A;  5JPE A;  5F3W A;  4YKE A;  3GVE A;  3IVD A;  2WDD A;  1KBP A;  2KKN A;  4DHL A;  3H62 B;  4TUG A;  3ICF A;  2P6B A;  5EQV A;  3QFO A;  5INB A;  1JK7 A;  3K7W C;  3QFK A;  4ORC A;  4XPN A;  4V0V A;  2IE3 C;  2Z72 A;  3TGH A;  3DSC A;  4UT2 A;  4ZVZ A;  1MF8 A;  4DT2 A;  3KBP A;  4FBW A;  3PSN A;  1OID A;  3IVE A;  3FGA C;  1S95 A;  2WDE A;  2BCD A;  3AUZ A;  1HP1 A;  3JYF A;  2A22 A;  1Z2X A;  3ZTV A;  3C9F A;  3THN A;  3QFN A;  4ORB A;  3N5U A;  2IE4 C;  1T70 A;  4MP0 A;  4FCX A;  3H66 A;  4IL1 A;  1AUI A;  3RL3 A;  2Z06 A;  4O4K A;  4FBQ A;  4UWQ A;  4H1Y P;  1HPU A; 
#chains in the Genus database with same CATH topology
 1QFC A;  2R17 A;  2NXF A;  3RL4 A;  3E7B A;  4UT3 A;  1V73 A;  1G5B A;  3RQZ A;  1UF3 A;  5C1V A;  4H1S A;  1HO5 A;  3H64 A;  5HPE A;  2DFJ A;  1T71 A;  4TUI A;  1UTE A;  3FLO A;  3RL5 A;  3QG5 C;  1XM7 A;  4V0W A;  5JPF A;  2AHD A;  1XZW A;  1USH A;  4KBP A;  2Z1A A;  3D03 A;  4MOY A;  4B2O A;  2HYP A;  4G9J A;  2GJU A;  4I5L C;  4WWL A;  4H2B A;  1NNW A;  4Q7F A;  1FJM A;  4I5N C;  2IAE C;  1WAO 1;  1IT6 A;  4FBK A;  2YVT A;  3IB7 A;  3H60 A;  1SU1 A;  4M0V A;  1II7 A;  4KKZ A;  2O8A A;  2ZBM A;  4H2I A;  1OIE A;  3H67 A;  3H69 A;  4H2F A;  2QFR A;  2QJC A;  2WDF A;  1S70 A;  2BQ8 X;  2USH A;  2HY1 A;  3HVQ A;  4LAC C;  4O24 A;  4O43 A;  4F0Z A;  5J28 A;  1OI8 A;  1TCO A;  2NPP C;  2O8G A;  4O5G A;  3DSD A;  1QHW A;  3V4Y A;  4DSY A;  4V0X A;  5DNY A;  2NYL C;  3AV0 A;  3P71 C;  4NZV A;  4JA9 A;  4LTY A;  2NYM C;  1M63 A;  3LL8 A;  5GTU A;  4LU9 A;  4IYP C;  4UT3 B;  3CK2 A;  1WAR A;  3THO B;  4H2G A;  2CV9 A;  4JA7 A;  2DXL A;  2DXN A;  2Q8U A;  2BDX A;  3PSO A;  4J6O A;  3H63 A;  5B8I A;  1W24 A;  2HYO A;  2JOG A;  3DW8 C;  1Z2W A;  3K7V C;  4ZX2 A;  3EGG A;  3H61 A;  5IOH A;  1S3L A;  1U32 A;  3T1I A;  3EGH A;  3H68 A;  1S3M A;  1S8E A;  3IB8 A;  4OR9 A;  5JJT A;  3E7A A;  2QFP A;  3C5W C;  1S3N A;  2XMO A;  2YEQ A;  3QFM A;  4MOV A;  3ZU0 A;  4HD0 A;  4ORA A;  2WDC A;  5JPE A;  5F3W A;  4YKE A;  3GVE A;  3IVD A;  2WDD A;  1KBP A;  2KKN A;  4DHL A;  3H62 B;  4TUG A;  3ICF A;  3E0J A;  2P6B A;  5EQV A;  3QFO A;  5INB A;  1JK7 A;  3K7W C;  3QFK A;  4ORC A;  4XPN A;  4V0V A;  2IE3 C;  2Z72 A;  3TGH A;  3DSC A;  4UT2 A;  4ZVZ A;  1MF8 A;  4DT2 A;  3KBP A;  4FBW A;  3PSN A;  1OID A;  3IVE A;  3FGA C;  1S95 A;  2WDE A;  2BCD A;  3AUZ A;  1HP1 A;  3JYF A;  2A22 A;  1Z2X A;  3ZTV A;  3C9F A;  3THN A;  3QFN A;  2ZOA A;  4ORB A;  3N5U A;  2IE4 C;  1T70 A;  4MP0 A;  4FCX A;  3H66 A;  4IL1 A;  1AUI A;  3RL3 A;  2Z06 A;  2ZO9 B;  4O4K A;  4FBQ A;  4UWQ A;  4H1Y P;  1HPU A; 
#chains in the Genus database with same CATH homology
 1QFC A;  2R17 A;  2NXF A;  3RL4 A;  3E7B A;  4UT3 A;  1V73 A;  1G5B A;  3RQZ A;  1UF3 A;  5C1V A;  4H1S A;  1HO5 A;  3H64 A;  5HPE A;  2DFJ A;  1T71 A;  4TUI A;  1UTE A;  3FLO A;  3RL5 A;  3QG5 C;  1XM7 A;  4V0W A;  5JPF A;  2AHD A;  1XZW A;  1USH A;  4KBP A;  2Z1A A;  3D03 A;  4MOY A;  4B2O A;  2HYP A;  4G9J A;  2GJU A;  4I5L C;  4WWL A;  4H2B A;  1NNW A;  4Q7F A;  1FJM A;  4I5N C;  2IAE C;  1WAO 1;  1IT6 A;  4FBK A;  2YVT A;  3IB7 A;  3H60 A;  1SU1 A;  4M0V A;  1II7 A;  4KKZ A;  2O8A A;  2ZBM A;  4H2I A;  1OIE A;  3H67 A;  3H69 A;  4H2F A;  2QFR A;  2QJC A;  2WDF A;  1S70 A;  2BQ8 X;  2USH A;  2HY1 A;  3HVQ A;  4LAC C;  4O24 A;  4O43 A;  4F0Z A;  5J28 A;  1OI8 A;  1TCO A;  2NPP C;  2O8G A;  4O5G A;  3DSD A;  1QHW A;  3V4Y A;  4DSY A;  4V0X A;  5DNY A;  2NYL C;  3AV0 A;  3P71 C;  4NZV A;  4JA9 A;  4LTY A;  2NYM C;  1M63 A;  3LL8 A;  5GTU A;  4LU9 A;  4IYP C;  4UT3 B;  3CK2 A;  1WAR A;  3THO B;  4H2G A;  2CV9 A;  4JA7 A;  2DXL A;  2DXN A;  2Q8U A;  2BDX A;  3PSO A;  4J6O A;  3H63 A;  5B8I A;  1W24 A;  2HYO A;  2JOG A;  3DW8 C;  1Z2W A;  3K7V C;  4ZX2 A;  3EGG A;  3H61 A;  5IOH A;  1S3L A;  1U32 A;  3T1I A;  3EGH A;  3H68 A;  1S3M A;  1S8E A;  3IB8 A;  4OR9 A;  5JJT A;  3E7A A;  2QFP A;  3C5W C;  1S3N A;  2XMO A;  2YEQ A;  3QFM A;  4MOV A;  3ZU0 A;  4HD0 A;  4ORA A;  2WDC A;  5JPE A;  5F3W A;  4YKE A;  3GVE A;  3IVD A;  2WDD A;  1KBP A;  2KKN A;  4DHL A;  3H62 B;  4TUG A;  3ICF A;  3E0J A;  2P6B A;  5EQV A;  3QFO A;  5INB A;  1JK7 A;  3K7W C;  3QFK A;  4ORC A;  4XPN A;  4V0V A;  2IE3 C;  2Z72 A;  3TGH A;  3DSC A;  4UT2 A;  4ZVZ A;  1MF8 A;  4DT2 A;  3KBP A;  4FBW A;  3PSN A;  1OID A;  3IVE A;  3FGA C;  1S95 A;  2WDE A;  2BCD A;  3AUZ A;  1HP1 A;  3JYF A;  2A22 A;  1Z2X A;  3ZTV A;  3C9F A;  3THN A;  3QFN A;  2ZOA A;  4ORB A;  3N5U A;  2IE4 C;  1T70 A;  4MP0 A;  4FCX A;  3H66 A;  4IL1 A;  1AUI A;  3RL3 A;  2Z06 A;  2ZO9 B;  4O4K A;  4FBQ A;  4UWQ A;  4H1Y P;  1HPU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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