1Z2XA

Crystal structure of mouse vps29
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Vacuolar protein sorting 29
publication title Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
pubmed doi rcsb
source organism Mus musculus
total genus 48
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1z2xA00
3H60A 1JK7A 3N5UA 4NZVA 3RL4A 1S95A 4YKEA 3HVQA 4F0ZA 4TUGA 3FGAC 1XM7A 4O4KA 3E7BA 2NYMC 4O5GA 1SU1A 3THOB 5B8IA 4I5NC 1UTEA 4Q7FA 3DSCA 2AHDA 4TUIA 4MOYA 4H2BA 1AUIA 2NPPC 3C5WC 2IAEC 1S8EA 2A22A 3H62B 2KKNA 1II7A 1OI8A 4IL1A 5JPEA 1KBPA 4G9JA 3RQZA 4FCXA 1UF3A 3ZU0A 4HD0A 3PSNA 4FBQA 3H69A 1U32A 3QFKA 4KKZA 2BQ8X 1V73A 1T70A 2P6BA 3JYFA 2ZBMA 1Z2WA 3RL3A 4JA7A 1QFCA 2IE3C 2CV9A 1IT6A 4LTYA 4UT3B 3K7WC 1HPUA 3C9FA 2HY1A 2QJCA 1FJMA 3QFNA 4O43A 2Q8UA 2HYOA 4UT3A 1S70A 3DSDA 1W24A 3P71C 5DNYA 4V0WA 4DSYA 3ZTVA 3H66A 4WWLA 1XZWA 2IE4C 3H67A 3IB8A 1WARA 2YVTA 4JA9A 4LU9A 3K7VC 2WDEA 4LACC 1HP1A 4ORAA 3QG5C 3EGHA 2BDXA 4H1SA 1OIDA 2NYLC 2GJUA 2DFJA 4FBWA 2R17A 2WDDA 4B2OA 2Z72A 3CK2A 4M0VA 3H61A 2QFPA 4UT2A 3RL5A 4IYPC 3AV0A 3H68A 4MOVA 4DT2A 4H2IA 1NNWA 3T1IA 1S3LA 1QHWA 4MP0A 2BCDA 3IVDA 4I5LC 4H2GA 3IVEA 5HPEA 1T71A 3DW8C 3V4YA 5INBA 5GTUA 1TCOA 3LL8A 5JPFA 4ORCA 5EQVA 3KBPA 5F3WA 5JJTA 3EGGA 3ICFA 2NXFA 3GVEA 2WDCA 3H64A 4ZVZA 3THNA 4J6OA 1MF8A 4O24A 5C1VA 2JOGA 2O8AA 3IB7A 3H63A 2QFRA 1OIEA 4KBPA 4ZX2A 3E7AA 4XPNA 3QFMA 3TGHA 3AUZA 2Z06A 4UWQA 2HYPA 1G5BA 4DHLA 4ORBA 2WDFA 4H1YP 5IOHA 1WAO1 2XMOA 1M63A 4OR9A 5J28A 2Z1AA 4V0XA 1S3MA 1HO5A 2USHA 2O8GA 1S3NA 4FBKA 4H2FA 1Z2XA 3PSOA 3QFOA 1USHA 4V0VA
chains in the Genus database with same CATH superfamily
3H60A 1JK7A 3N5UA 4NZVA 3RL4A 1S95A 3D03A 4YKEA 3HVQA 4F0ZA 4TUGA 3FGAC 1XM7A 4O4KA 3E7BA 2NYMC 4O5GA 1SU1A 3THOB 5B8IA 4I5NC 1UTEA 4Q7FA 3DSCA 2AHDA 4TUIA 4MOYA 4H2BA 1AUIA 3FLOA 2NPPC 3C5WC 2IAEC 1S8EA 2A22A 3H62B 2KKNA 1II7A 1OI8A 4IL1A 5JPEA 2DXNA 1KBPA 4G9JA 3RQZA 4FCXA 1UF3A 2DXLA 3ZU0A 4HD0A 3PSNA 4FBQA 3H69A 1U32A 3QFKA 4KKZA 2BQ8X 1V73A 1T70A 2P6BA 3JYFA 2ZBMA 1Z2WA 3RL3A 4JA7A 1QFCA 2IE3C 2CV9A 1IT6A 4LTYA 4UT3B 3K7WC 1HPUA 3C9FA 2HY1A 2QJCA 1FJMA 3QFNA 4O43A 2Q8UA 2HYOA 4UT3A 1S70A 3DSDA 1W24A 3P71C 5DNYA 4V0WA 4DSYA 3ZTVA 3H66A 4WWLA 1XZWA 2IE4C 3H67A 3IB8A 1WARA 2YVTA 2ZO9B 4JA9A 3K7VC 4LU9A 2WDEA 4LACC 1HP1A 2ZOAA 4ORAA 2YEQA 3QG5C 3EGHA 2BDXA 4H1SA 1OIDA 2NYLC 2GJUA 2DFJA 4FBWA 2R17A 2WDDA 4B2OA 2Z72A 3CK2A 4M0VA 3H61A 2QFPA 4UT2A 3RL5A 4IYPC 3AV0A 3H68A 4MOVA 4DT2A 4H2IA 1NNWA 3T1IA 1S3LA 1QHWA 4MP0A 2BCDA 3IVDA 4I5LC 4H2GA 3IVEA 5HPEA 1T71A 3DW8C 3V4YA 5INBA 5GTUA 1TCOA 3LL8A 5JPFA 4ORCA 5EQVA 3KBPA 5F3WA 5JJTA 3EGGA 3ICFA 2NXFA 3GVEA 2WDCA 3H64A 4ZVZA 3THNA 4J6OA 1MF8A 4O24A 5C1VA 2JOGA 2O8AA 3IB7A 3H63A 2QFRA 1OIEA 4KBPA 4ZX2A 3E7AA 4XPNA 3QFMA 3TGHA 3AUZA 2Z06A 3E0JA 4UWQA 2HYPA 1G5BA 4DHLA 4ORBA 2WDFA 4H1YP 5IOHA 1WAO1 2XMOA 1M63A 4OR9A 5J28A 2Z1AA 4V0XA 1S3MA 1HO5A 2USHA 2O8GA 1S3NA 4FBKA 4H2FA 1Z2XA 3PSOA 3QFOA 1USHA 4V0VA
chains in the Genus database with same CATH topology
3H60A 1JK7A 3N5UA 4NZVA 3RL4A 1S95A 3D03A 4YKEA 3HVQA 4F0ZA 4TUGA 3FGAC 1XM7A 4O4KA 3E7BA 2NYMC 4O5GA 1SU1A 3THOB 5B8IA 4I5NC 1UTEA 4Q7FA 3DSCA 2AHDA 4TUIA 4MOYA 4H2BA 1AUIA 3FLOA 2NPPC 3C5WC 2IAEC 1S8EA 2A22A 3H62B 2KKNA 1II7A 1OI8A 4IL1A 5JPEA 2DXNA 1KBPA 4G9JA 3RQZA 4FCXA 1UF3A 2DXLA 3ZU0A 4HD0A 3PSNA 4FBQA 3H69A 1U32A 3QFKA 4KKZA 2BQ8X 1V73A 1T70A 2P6BA 3JYFA 2ZBMA 1Z2WA 3RL3A 4JA7A 1QFCA 2IE3C 2CV9A 1IT6A 4LTYA 4UT3B 3K7WC 1HPUA 3C9FA 2HY1A 2QJCA 1FJMA 3QFNA 4O43A 2Q8UA 2HYOA 4UT3A 1S70A 3DSDA 1W24A 3P71C 5DNYA 4V0WA 4DSYA 3ZTVA 3H66A 4WWLA 1XZWA 2IE4C 3H67A 3IB8A 1WARA 2YVTA 2ZO9B 4JA9A 3K7VC 4LU9A 2WDEA 4LACC 1HP1A 2ZOAA 4ORAA 2YEQA 3QG5C 3EGHA 2BDXA 4H1SA 1OIDA 2NYLC 2GJUA 2DFJA 4FBWA 2R17A 2WDDA 4B2OA 2Z72A 3CK2A 4M0VA 3H61A 2QFPA 4UT2A 3RL5A 4IYPC 3AV0A 3H68A 4MOVA 4DT2A 4H2IA 1NNWA 3T1IA 1S3LA 1QHWA 4MP0A 2BCDA 3IVDA 4I5LC 4H2GA 3IVEA 5HPEA 1T71A 3DW8C 3V4YA 5INBA 5GTUA 1TCOA 3LL8A 5JPFA 4ORCA 5EQVA 3KBPA 5F3WA 5JJTA 3EGGA 3ICFA 2NXFA 3GVEA 2WDCA 3H64A 4ZVZA 3THNA 4J6OA 1MF8A 4O24A 5C1VA 2JOGA 2O8AA 3IB7A 3H63A 2QFRA 1OIEA 4KBPA 4ZX2A 3E7AA 4XPNA 3QFMA 3TGHA 3AUZA 2Z06A 3E0JA 4UWQA 2HYPA 1G5BA 4DHLA 4ORBA 2WDFA 4H1YP 5IOHA 1WAO1 2XMOA 1M63A 4OR9A 5J28A 2Z1AA 4V0XA 1S3MA 1HO5A 2USHA 2O8GA 1S3NA 4FBKA 4H2FA 1Z2XA 3PSOA 3QFOA 1USHA 4V0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H60 A;  1JK7 A;  3N5U A;  4NZV A;  3RL4 A;  1S95 A;  4YKE A;  3HVQ A;  4F0Z A;  4TUG A;  3FGA C;  1XM7 A;  4O4K A;  3E7B A;  2NYM C;  4O5G A;  1SU1 A;  3THO B;  5B8I A;  4I5N C;  1UTE A;  4Q7F A;  3DSC A;  2AHD A;  4TUI A;  4MOY A;  4H2B A;  1AUI A;  2NPP C;  3C5W C;  2IAE C;  1S8E A;  2A22 A;  3H62 B;  2KKN A;  1II7 A;  1OI8 A;  4IL1 A;  5JPE A;  1KBP A;  4G9J A;  3RQZ A;  4FCX A;  1UF3 A;  3ZU0 A;  4HD0 A;  3PSN A;  4FBQ A;  3H69 A;  1U32 A;  3QFK A;  4KKZ A;  2BQ8 X;  1V73 A;  1T70 A;  2P6B A;  3JYF A;  2ZBM A;  1Z2W A;  3RL3 A;  4JA7 A;  1QFC A;  2IE3 C;  2CV9 A;  1IT6 A;  4LTY A;  4UT3 B;  3K7W C;  1HPU A;  3C9F A;  2HY1 A;  2QJC A;  1FJM A;  3QFN A;  4O43 A;  2Q8U A;  2HYO A;  4UT3 A;  1S70 A;  3DSD A;  1W24 A;  3P71 C;  5DNY A;  4V0W A;  4DSY A;  3ZTV A;  3H66 A;  4WWL A;  1XZW A;  2IE4 C;  3H67 A;  3IB8 A;  1WAR A;  2YVT A;  4JA9 A;  4LU9 A;  3K7V C;  2WDE A;  4LAC C;  1HP1 A;  4ORA A;  3QG5 C;  3EGH A;  2BDX A;  4H1S A;  1OID A;  2NYL C;  2GJU A;  2DFJ A;  4FBW A;  2R17 A;  2WDD A;  4B2O A;  2Z72 A;  3CK2 A;  4M0V A;  3H61 A;  2QFP A;  4UT2 A;  3RL5 A;  4IYP C;  3AV0 A;  3H68 A;  4MOV A;  4DT2 A;  4H2I A;  1NNW A;  3T1I A;  1S3L A;  1QHW A;  4MP0 A;  2BCD A;  3IVD A;  4I5L C;  4H2G A;  3IVE A;  5HPE A;  1T71 A;  3DW8 C;  3V4Y A;  5INB A;  5GTU A;  1TCO A;  3LL8 A;  5JPF A;  4ORC A;  5EQV A;  3KBP A;  5F3W A;  5JJT A;  3EGG A;  3ICF A;  2NXF A;  3GVE A;  2WDC A;  3H64 A;  4ZVZ A;  3THN A;  4J6O A;  1MF8 A;  4O24 A;  5C1V A;  2JOG A;  2O8A A;  3IB7 A;  3H63 A;  2QFR A;  1OIE A;  4KBP A;  4ZX2 A;  3E7A A;  4XPN A;  3QFM A;  3TGH A;  3AUZ A;  2Z06 A;  4UWQ A;  2HYP A;  1G5B A;  4DHL A;  4ORB A;  2WDF A;  4H1Y P;  5IOH A;  1WAO 1;  2XMO A;  1M63 A;  4OR9 A;  5J28 A;  2Z1A A;  4V0X A;  1S3M A;  1HO5 A;  2USH A;  2O8G A;  1S3N A;  4FBK A;  4H2F A;  1Z2X A;  3PSO A;  3QFO A;  1USH A;  4V0V A; 
#chains in the Genus database with same CATH topology
 3H60 A;  1JK7 A;  3N5U A;  4NZV A;  3RL4 A;  1S95 A;  3D03 A;  4YKE A;  3HVQ A;  4F0Z A;  4TUG A;  3FGA C;  1XM7 A;  4O4K A;  3E7B A;  2NYM C;  4O5G A;  1SU1 A;  3THO B;  5B8I A;  4I5N C;  1UTE A;  4Q7F A;  3DSC A;  2AHD A;  4TUI A;  4MOY A;  4H2B A;  1AUI A;  3FLO A;  2NPP C;  3C5W C;  2IAE C;  1S8E A;  2A22 A;  3H62 B;  2KKN A;  1II7 A;  1OI8 A;  4IL1 A;  5JPE A;  2DXN A;  1KBP A;  4G9J A;  3RQZ A;  4FCX A;  1UF3 A;  2DXL A;  3ZU0 A;  4HD0 A;  3PSN A;  4FBQ A;  3H69 A;  1U32 A;  3QFK A;  4KKZ A;  2BQ8 X;  1V73 A;  1T70 A;  2P6B A;  3JYF A;  2ZBM A;  1Z2W A;  3RL3 A;  4JA7 A;  1QFC A;  2IE3 C;  2CV9 A;  1IT6 A;  4LTY A;  4UT3 B;  3K7W C;  1HPU A;  3C9F A;  2HY1 A;  2QJC A;  1FJM A;  3QFN A;  4O43 A;  2Q8U A;  2HYO A;  4UT3 A;  1S70 A;  3DSD A;  1W24 A;  3P71 C;  5DNY A;  4V0W A;  4DSY A;  3ZTV A;  3H66 A;  4WWL A;  1XZW A;  2IE4 C;  3H67 A;  3IB8 A;  1WAR A;  2YVT A;  2ZO9 B;  4JA9 A;  3K7V C;  4LU9 A;  2WDE A;  4LAC C;  1HP1 A;  2ZOA A;  4ORA A;  2YEQ A;  3QG5 C;  3EGH A;  2BDX A;  4H1S A;  1OID A;  2NYL C;  2GJU A;  2DFJ A;  4FBW A;  2R17 A;  2WDD A;  4B2O A;  2Z72 A;  3CK2 A;  4M0V A;  3H61 A;  2QFP A;  4UT2 A;  3RL5 A;  4IYP C;  3AV0 A;  3H68 A;  4MOV A;  4DT2 A;  4H2I A;  1NNW A;  3T1I A;  1S3L A;  1QHW A;  4MP0 A;  2BCD A;  3IVD A;  4I5L C;  4H2G A;  3IVE A;  5HPE A;  1T71 A;  3DW8 C;  3V4Y A;  5INB A;  5GTU A;  1TCO A;  3LL8 A;  5JPF A;  4ORC A;  5EQV A;  3KBP A;  5F3W A;  5JJT A;  3EGG A;  3ICF A;  2NXF A;  3GVE A;  2WDC A;  3H64 A;  4ZVZ A;  3THN A;  4J6O A;  1MF8 A;  4O24 A;  5C1V A;  2JOG A;  2O8A A;  3IB7 A;  3H63 A;  2QFR A;  1OIE A;  4KBP A;  4ZX2 A;  3E7A A;  4XPN A;  3QFM A;  3TGH A;  3AUZ A;  2Z06 A;  3E0J A;  4UWQ A;  2HYP A;  1G5B A;  4DHL A;  4ORB A;  2WDF A;  4H1Y P;  5IOH A;  1WAO 1;  2XMO A;  1M63 A;  4OR9 A;  5J28 A;  2Z1A A;  4V0X A;  1S3M A;  1HO5 A;  2USH A;  2O8G A;  1S3N A;  4FBK A;  4H2F A;  1Z2X A;  3PSO A;  3QFO A;  1USH A;  4V0V A; 
#chains in the Genus database with same CATH homology
 3H60 A;  1JK7 A;  3N5U A;  4NZV A;  3RL4 A;  1S95 A;  3D03 A;  4YKE A;  3HVQ A;  4F0Z A;  4TUG A;  3FGA C;  1XM7 A;  4O4K A;  3E7B A;  2NYM C;  4O5G A;  1SU1 A;  3THO B;  5B8I A;  4I5N C;  1UTE A;  4Q7F A;  3DSC A;  2AHD A;  4TUI A;  4MOY A;  4H2B A;  1AUI A;  3FLO A;  2NPP C;  3C5W C;  2IAE C;  1S8E A;  2A22 A;  3H62 B;  2KKN A;  1II7 A;  1OI8 A;  4IL1 A;  5JPE A;  2DXN A;  1KBP A;  4G9J A;  3RQZ A;  4FCX A;  1UF3 A;  2DXL A;  3ZU0 A;  4HD0 A;  3PSN A;  4FBQ A;  3H69 A;  1U32 A;  3QFK A;  4KKZ A;  2BQ8 X;  1V73 A;  1T70 A;  2P6B A;  3JYF A;  2ZBM A;  1Z2W A;  3RL3 A;  4JA7 A;  1QFC A;  2IE3 C;  2CV9 A;  1IT6 A;  4LTY A;  4UT3 B;  3K7W C;  1HPU A;  3C9F A;  2HY1 A;  2QJC A;  1FJM A;  3QFN A;  4O43 A;  2Q8U A;  2HYO A;  4UT3 A;  1S70 A;  3DSD A;  1W24 A;  3P71 C;  5DNY A;  4V0W A;  4DSY A;  3ZTV A;  3H66 A;  4WWL A;  1XZW A;  2IE4 C;  3H67 A;  3IB8 A;  1WAR A;  2YVT A;  2ZO9 B;  4JA9 A;  3K7V C;  4LU9 A;  2WDE A;  4LAC C;  1HP1 A;  2ZOA A;  4ORA A;  2YEQ A;  3QG5 C;  3EGH A;  2BDX A;  4H1S A;  1OID A;  2NYL C;  2GJU A;  2DFJ A;  4FBW A;  2R17 A;  2WDD A;  4B2O A;  2Z72 A;  3CK2 A;  4M0V A;  3H61 A;  2QFP A;  4UT2 A;  3RL5 A;  4IYP C;  3AV0 A;  3H68 A;  4MOV A;  4DT2 A;  4H2I A;  1NNW A;  3T1I A;  1S3L A;  1QHW A;  4MP0 A;  2BCD A;  3IVD A;  4I5L C;  4H2G A;  3IVE A;  5HPE A;  1T71 A;  3DW8 C;  3V4Y A;  5INB A;  5GTU A;  1TCO A;  3LL8 A;  5JPF A;  4ORC A;  5EQV A;  3KBP A;  5F3W A;  5JJT A;  3EGG A;  3ICF A;  2NXF A;  3GVE A;  2WDC A;  3H64 A;  4ZVZ A;  3THN A;  4J6O A;  1MF8 A;  4O24 A;  5C1V A;  2JOG A;  2O8A A;  3IB7 A;  3H63 A;  2QFR A;  1OIE A;  4KBP A;  4ZX2 A;  3E7A A;  4XPN A;  3QFM A;  3TGH A;  3AUZ A;  2Z06 A;  3E0J A;  4UWQ A;  2HYP A;  1G5B A;  4DHL A;  4ORB A;  2WDF A;  4H1Y P;  5IOH A;  1WAO 1;  2XMO A;  1M63 A;  4OR9 A;  5J28 A;  2Z1A A;  4V0X A;  1S3M A;  1HO5 A;  2USH A;  2O8G A;  1S3N A;  4FBK A;  4H2F A;  1Z2X A;  3PSO A;  3QFO A;  1USH A;  4V0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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