1QFCA

Structure of rat purple acid phosphatase
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
302
structure length
287
Chain Sequence
TAPASTLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPRSNITVAIFMLDTVMLCGNSVARTQLSWLKKQLAAAKEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a mammalian purple acid phosphatase.
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Hydrolase
molecule keywords PROTEIN (PURPLE ACID PHOSPHATASE)
total genus 75
structure length 287
sequence length 302
ec nomenclature ec 3.1.3.2: Acid phosphatase.
pdb deposition date 1999-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1qfcA00
2AHDA 1JK7A 4G9JA 5IOHA 3H63A 4JA7A 4FBKA 1V73A 2BQ8X 4TUGA 3PSNA 2BCDA 5C1VA 2YVTA 1WARA 1Z2XA 3H67A 3E7AA 1UF3A 4LTYA 5GTUA 4UT3B 4IL1A 4DSYA 1S3NA 3TGHA 3QFMA 4HD0A 3DSCA 2XMOA 1S95A 2NPPC 4O5GA 5EQVA 4F0ZA 1HP1A 5JJTA 4OR9A 3IVDA 1XM7A 4H2GA 1FJMA 1S8EA 1XZWA 1MF8A 3IVEA 2Z06A 4ORAA 4V0WA 4M0VA 4ZVZA 1OIDA 3ICFA 1HO5A 5B8IA 4JA9A 3THNA 2CV9A 1OIEA 3IB8A 5F3WA 2ZBMA 3EGHA 3H64A 3C9FA 4YKEA 4ORCA 4H1YP 4H1SA 3FGAC 4UT2A 4V0VA 1S70A 2HYOA 1S3MA 1T71A 4FCXA 1WAO1 2JOGA 3AUZA 5INBA 3QFKA 4MP0A 4H2FA 1AUIA 1II7A 4J6OA 2NXFA 3AV0A 5JPFA 4ZX2A 3RQZA 3E7BA 4LACC 3ZU0A 4FBQA 2IAEC 4ORBA 2HYPA 3H61A 4MOVA 2O8AA 4B2OA 1TCOA 2Z72A 3QFNA 1SU1A 3H69A 2O8GA 1QHWA 2WDFA 4I5NC 4H2IA 3H68A 3KBPA 2QFPA 2USHA 4NZVA 3K7WC 3H62B 2WDCA 4Q7FA 3QG5C 4WWLA 1HPUA 3HVQA 4KKZA 1W24A 2WDEA 3DSDA 4IYPC 1OI8A 2IE3C 4DT2A 4MOYA 3N5UA 2NYLC 4XPNA 2GJUA 2BDXA 2QJCA 2DFJA 2HY1A 3P71C 3ZTVA 5DNYA 3T1IA 2NYMC 4TUIA 4LU9A 4O43A 3GVEA 1UTEA 2IE4C 3K7VC 3CK2A 1T70A 3RL4A 2A22A 4O24A 4H2BA 4O4KA 1M63A 2WDDA 3IB7A 1IT6A 3LL8A 3H60A 5J28A 3H66A 1USHA 3C5WC 4UWQA 3RL3A 4V0XA 2QFRA 3PSOA 4UT3A 4I5LC 4DHLA 3QFOA 2KKNA 3EGGA 5HPEA 4FBWA 1Z2WA 1G5BA 1U32A 3RL5A 3V4YA 1S3LA 2Q8UA 1KBPA 4KBPA 3THOB 3DW8C 2Z1AA 3JYFA 2R17A 2P6BA 1QFCA 5JPEA 1NNWA
chains in the Genus database with same CATH superfamily
2AHDA 1JK7A 4G9JA 5IOHA 3H63A 4JA7A 4FBKA 1V73A 2BQ8X 4TUGA 2ZO9B 3PSNA 2BCDA 5C1VA 2YVTA 1WARA 1Z2XA 3H67A 3E7AA 1UF3A 4LTYA 5GTUA 4UT3B 4IL1A 4DSYA 1S3NA 3TGHA 3QFMA 4HD0A 3DSCA 2XMOA 1S95A 2NPPC 4O5GA 5EQVA 4F0ZA 1HP1A 5JJTA 4OR9A 3IVDA 1XM7A 4H2GA 1FJMA 1S8EA 1XZWA 1MF8A 3IVEA 2Z06A 4ORAA 4V0WA 4M0VA 4ZVZA 1OIDA 3E0JA 3ICFA 1HO5A 5B8IA 4JA9A 3THNA 2CV9A 1OIEA 3IB8A 5F3WA 2ZBMA 3EGHA 3H64A 3C9FA 4YKEA 4ORCA 4H1YP 4H1SA 3FGAC 4UT2A 4V0VA 1S70A 2HYOA 1S3MA 1T71A 4FCXA 1WAO1 2JOGA 3AUZA 5INBA 3QFKA 4MP0A 4H2FA 1AUIA 1II7A 4J6OA 2NXFA 3AV0A 5JPFA 4ZX2A 3RQZA 3E7BA 4LACC 3ZU0A 2YEQA 3FLOA 4FBQA 2IAEC 4ORBA 2HYPA 3H61A 2ZOAA 4MOVA 2O8AA 4B2OA 1TCOA 2Z72A 3QFNA 1SU1A 3H69A 2O8GA 1QHWA 2WDFA 2DXLA 4I5NC 4H2IA 3H68A 3KBPA 2QFPA 2USHA 4NZVA 3K7WC 3H62B 2WDCA 4Q7FA 3QG5C 4WWLA 1HPUA 3HVQA 4KKZA 1W24A 2WDEA 3DSDA 4IYPC 1OI8A 2IE3C 4DT2A 4MOYA 3N5UA 2NYLC 4XPNA 2GJUA 2BDXA 2QJCA 2DXNA 2DFJA 2HY1A 3P71C 3ZTVA 5DNYA 3T1IA 2NYMC 4TUIA 4LU9A 4O43A 3GVEA 1UTEA 2IE4C 3K7VC 1T70A 3CK2A 3RL4A 2A22A 4O24A 4H2BA 4O4KA 1M63A 2WDDA 3IB7A 1IT6A 3LL8A 3H60A 5J28A 3H66A 1USHA 3C5WC 4UWQA 3RL3A 4V0XA 2QFRA 3PSOA 4UT3A 4I5LC 4DHLA 3QFOA 2KKNA 3EGGA 5HPEA 4FBWA 1Z2WA 1G5BA 1U32A 3RL5A 3V4YA 1S3LA 2Q8UA 1KBPA 4KBPA 3THOB 3DW8C 2Z1AA 3D03A 3JYFA 2R17A 2P6BA 1QFCA 5JPEA 1NNWA
chains in the Genus database with same CATH topology
2AHDA 1JK7A 4G9JA 5IOHA 3H63A 4JA7A 4FBKA 1V73A 2BQ8X 4TUGA 2ZO9B 3PSNA 2BCDA 5C1VA 2YVTA 1WARA 1Z2XA 3H67A 3E7AA 1UF3A 4LTYA 5GTUA 4UT3B 4IL1A 4DSYA 1S3NA 3TGHA 3QFMA 4HD0A 3DSCA 2XMOA 1S95A 2NPPC 4O5GA 5EQVA 4F0ZA 1HP1A 5JJTA 4OR9A 3IVDA 1XM7A 4H2GA 1FJMA 1S8EA 1XZWA 1MF8A 3IVEA 2Z06A 4ORAA 4V0WA 4M0VA 4ZVZA 1OIDA 3E0JA 3ICFA 1HO5A 5B8IA 4JA9A 3THNA 2CV9A 1OIEA 3IB8A 5F3WA 2ZBMA 3EGHA 3H64A 3C9FA 4YKEA 4ORCA 4H1YP 4H1SA 3FGAC 4UT2A 4V0VA 1S70A 2HYOA 1S3MA 1T71A 4FCXA 1WAO1 2JOGA 3AUZA 5INBA 3QFKA 4MP0A 4H2FA 1AUIA 1II7A 4J6OA 2NXFA 3AV0A 5JPFA 4ZX2A 3RQZA 3E7BA 4LACC 3ZU0A 2YEQA 3FLOA 4FBQA 2IAEC 4ORBA 2HYPA 3H61A 2ZOAA 4MOVA 2O8AA 4B2OA 1TCOA 2Z72A 3QFNA 1SU1A 3H69A 2O8GA 1QHWA 2WDFA 2DXLA 4I5NC 4H2IA 3H68A 3KBPA 2QFPA 2USHA 4NZVA 3K7WC 3H62B 2WDCA 4Q7FA 3QG5C 4WWLA 1HPUA 3HVQA 4KKZA 1W24A 2WDEA 3DSDA 4IYPC 1OI8A 2IE3C 4DT2A 4MOYA 3N5UA 2NYLC 4XPNA 2GJUA 2BDXA 2QJCA 2DXNA 2DFJA 2HY1A 3P71C 3ZTVA 5DNYA 3T1IA 2NYMC 4TUIA 4LU9A 4O43A 3GVEA 1UTEA 2IE4C 3K7VC 1T70A 3CK2A 3RL4A 2A22A 4O24A 4H2BA 4O4KA 1M63A 2WDDA 3IB7A 1IT6A 3LL8A 3H60A 5J28A 3H66A 1USHA 3C5WC 4UWQA 3RL3A 4V0XA 2QFRA 3PSOA 4UT3A 4I5LC 4DHLA 3QFOA 2KKNA 3EGGA 5HPEA 4FBWA 1Z2WA 1G5BA 1U32A 3RL5A 3V4YA 1S3LA 2Q8UA 1KBPA 4KBPA 3THOB 3DW8C 2Z1AA 3D03A 3JYFA 2R17A 2P6BA 1QFCA 5JPEA 1NNWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHD A;  1JK7 A;  4G9J A;  5IOH A;  3H63 A;  4JA7 A;  4FBK A;  1V73 A;  2BQ8 X;  4TUG A;  3PSN A;  2BCD A;  5C1V A;  2YVT A;  1WAR A;  1Z2X A;  3H67 A;  3E7A A;  1UF3 A;  4LTY A;  5GTU A;  4UT3 B;  4IL1 A;  4DSY A;  1S3N A;  3TGH A;  3QFM A;  4HD0 A;  3DSC A;  2XMO A;  1S95 A;  2NPP C;  4O5G A;  5EQV A;  4F0Z A;  1HP1 A;  5JJT A;  4OR9 A;  3IVD A;  1XM7 A;  4H2G A;  1FJM A;  1S8E A;  1XZW A;  1MF8 A;  3IVE A;  2Z06 A;  4ORA A;  4V0W A;  4M0V A;  4ZVZ A;  1OID A;  3ICF A;  1HO5 A;  5B8I A;  4JA9 A;  3THN A;  2CV9 A;  1OIE A;  3IB8 A;  5F3W A;  2ZBM A;  3EGH A;  3H64 A;  3C9F A;  4YKE A;  4ORC A;  4H1Y P;  4H1S A;  3FGA C;  4UT2 A;  4V0V A;  1S70 A;  2HYO A;  1S3M A;  1T71 A;  4FCX A;  1WAO 1;  2JOG A;  3AUZ A;  5INB A;  3QFK A;  4MP0 A;  4H2F A;  1AUI A;  1II7 A;  4J6O A;  2NXF A;  3AV0 A;  5JPF A;  4ZX2 A;  3RQZ A;  3E7B A;  4LAC C;  3ZU0 A;  4FBQ A;  2IAE C;  4ORB A;  2HYP A;  3H61 A;  4MOV A;  2O8A A;  4B2O A;  1TCO A;  2Z72 A;  3QFN A;  1SU1 A;  3H69 A;  2O8G A;  1QHW A;  2WDF A;  4I5N C;  4H2I A;  3H68 A;  3KBP A;  2QFP A;  2USH A;  4NZV A;  3K7W C;  3H62 B;  2WDC A;  4Q7F A;  3QG5 C;  4WWL A;  1HPU A;  3HVQ A;  4KKZ A;  1W24 A;  2WDE A;  3DSD A;  4IYP C;  1OI8 A;  2IE3 C;  4DT2 A;  4MOY A;  3N5U A;  2NYL C;  4XPN A;  2GJU A;  2BDX A;  2QJC A;  2DFJ A;  2HY1 A;  3P71 C;  3ZTV A;  5DNY A;  3T1I A;  2NYM C;  4TUI A;  4LU9 A;  4O43 A;  3GVE A;  1UTE A;  2IE4 C;  3K7V C;  3CK2 A;  1T70 A;  3RL4 A;  2A22 A;  4O24 A;  4H2B A;  4O4K A;  1M63 A;  2WDD A;  3IB7 A;  1IT6 A;  3LL8 A;  3H60 A;  5J28 A;  3H66 A;  1USH A;  3C5W C;  4UWQ A;  3RL3 A;  4V0X A;  2QFR A;  3PSO A;  4UT3 A;  4I5L C;  4DHL A;  3QFO A;  2KKN A;  3EGG A;  5HPE A;  4FBW A;  1Z2W A;  1G5B A;  1U32 A;  3RL5 A;  3V4Y A;  1S3L A;  2Q8U A;  1KBP A;  4KBP A;  3THO B;  3DW8 C;  2Z1A A;  3JYF A;  2R17 A;  2P6B A;  1QFC A;  5JPE A;  1NNW A; 
#chains in the Genus database with same CATH topology
 2AHD A;  1JK7 A;  4G9J A;  5IOH A;  3H63 A;  4JA7 A;  4FBK A;  1V73 A;  2BQ8 X;  4TUG A;  2ZO9 B;  3PSN A;  2BCD A;  5C1V A;  2YVT A;  1WAR A;  1Z2X A;  3H67 A;  3E7A A;  1UF3 A;  4LTY A;  5GTU A;  4UT3 B;  4IL1 A;  4DSY A;  1S3N A;  3TGH A;  3QFM A;  4HD0 A;  3DSC A;  2XMO A;  1S95 A;  2NPP C;  4O5G A;  5EQV A;  4F0Z A;  1HP1 A;  5JJT A;  4OR9 A;  3IVD A;  1XM7 A;  4H2G A;  1FJM A;  1S8E A;  1XZW A;  1MF8 A;  3IVE A;  2Z06 A;  4ORA A;  4V0W A;  4M0V A;  4ZVZ A;  1OID A;  3E0J A;  3ICF A;  1HO5 A;  5B8I A;  4JA9 A;  3THN A;  2CV9 A;  1OIE A;  3IB8 A;  5F3W A;  2ZBM A;  3EGH A;  3H64 A;  3C9F A;  4YKE A;  4ORC A;  4H1Y P;  4H1S A;  3FGA C;  4UT2 A;  4V0V A;  1S70 A;  2HYO A;  1S3M A;  1T71 A;  4FCX A;  1WAO 1;  2JOG A;  3AUZ A;  5INB A;  3QFK A;  4MP0 A;  4H2F A;  1AUI A;  1II7 A;  4J6O A;  2NXF A;  3AV0 A;  5JPF A;  4ZX2 A;  3RQZ A;  3E7B A;  4LAC C;  3ZU0 A;  2YEQ A;  3FLO A;  4FBQ A;  2IAE C;  4ORB A;  2HYP A;  3H61 A;  2ZOA A;  4MOV A;  2O8A A;  4B2O A;  1TCO A;  2Z72 A;  3QFN A;  1SU1 A;  3H69 A;  2O8G A;  1QHW A;  2WDF A;  2DXL A;  4I5N C;  4H2I A;  3H68 A;  3KBP A;  2QFP A;  2USH A;  4NZV A;  3K7W C;  3H62 B;  2WDC A;  4Q7F A;  3QG5 C;  4WWL A;  1HPU A;  3HVQ A;  4KKZ A;  1W24 A;  2WDE A;  3DSD A;  4IYP C;  1OI8 A;  2IE3 C;  4DT2 A;  4MOY A;  3N5U A;  2NYL C;  4XPN A;  2GJU A;  2BDX A;  2QJC A;  2DXN A;  2DFJ A;  2HY1 A;  3P71 C;  3ZTV A;  5DNY A;  3T1I A;  2NYM C;  4TUI A;  4LU9 A;  4O43 A;  3GVE A;  1UTE A;  2IE4 C;  3K7V C;  1T70 A;  3CK2 A;  3RL4 A;  2A22 A;  4O24 A;  4H2B A;  4O4K A;  1M63 A;  2WDD A;  3IB7 A;  1IT6 A;  3LL8 A;  3H60 A;  5J28 A;  3H66 A;  1USH A;  3C5W C;  4UWQ A;  3RL3 A;  4V0X A;  2QFR A;  3PSO A;  4UT3 A;  4I5L C;  4DHL A;  3QFO A;  2KKN A;  3EGG A;  5HPE A;  4FBW A;  1Z2W A;  1G5B A;  1U32 A;  3RL5 A;  3V4Y A;  1S3L A;  2Q8U A;  1KBP A;  4KBP A;  3THO B;  3DW8 C;  2Z1A A;  3D03 A;  3JYF A;  2R17 A;  2P6B A;  1QFC A;  5JPE A;  1NNW A; 
#chains in the Genus database with same CATH homology
 2AHD A;  1JK7 A;  4G9J A;  5IOH A;  3H63 A;  4JA7 A;  4FBK A;  1V73 A;  2BQ8 X;  4TUG A;  2ZO9 B;  3PSN A;  2BCD A;  5C1V A;  2YVT A;  1WAR A;  1Z2X A;  3H67 A;  3E7A A;  1UF3 A;  4LTY A;  5GTU A;  4UT3 B;  4IL1 A;  4DSY A;  1S3N A;  3TGH A;  3QFM A;  4HD0 A;  3DSC A;  2XMO A;  1S95 A;  2NPP C;  4O5G A;  5EQV A;  4F0Z A;  1HP1 A;  5JJT A;  4OR9 A;  3IVD A;  1XM7 A;  4H2G A;  1FJM A;  1S8E A;  1XZW A;  1MF8 A;  3IVE A;  2Z06 A;  4ORA A;  4V0W A;  4M0V A;  4ZVZ A;  1OID A;  3E0J A;  3ICF A;  1HO5 A;  5B8I A;  4JA9 A;  3THN A;  2CV9 A;  1OIE A;  3IB8 A;  5F3W A;  2ZBM A;  3EGH A;  3H64 A;  3C9F A;  4YKE A;  4ORC A;  4H1Y P;  4H1S A;  3FGA C;  4UT2 A;  4V0V A;  1S70 A;  2HYO A;  1S3M A;  1T71 A;  4FCX A;  1WAO 1;  2JOG A;  3AUZ A;  5INB A;  3QFK A;  4MP0 A;  4H2F A;  1AUI A;  1II7 A;  4J6O A;  2NXF A;  3AV0 A;  5JPF A;  4ZX2 A;  3RQZ A;  3E7B A;  4LAC C;  3ZU0 A;  2YEQ A;  3FLO A;  4FBQ A;  2IAE C;  4ORB A;  2HYP A;  3H61 A;  2ZOA A;  4MOV A;  2O8A A;  4B2O A;  1TCO A;  2Z72 A;  3QFN A;  1SU1 A;  3H69 A;  2O8G A;  1QHW A;  2WDF A;  2DXL A;  4I5N C;  4H2I A;  3H68 A;  3KBP A;  2QFP A;  2USH A;  4NZV A;  3K7W C;  3H62 B;  2WDC A;  4Q7F A;  3QG5 C;  4WWL A;  1HPU A;  3HVQ A;  4KKZ A;  1W24 A;  2WDE A;  3DSD A;  4IYP C;  1OI8 A;  2IE3 C;  4DT2 A;  4MOY A;  3N5U A;  2NYL C;  4XPN A;  2GJU A;  2BDX A;  2QJC A;  2DXN A;  2DFJ A;  2HY1 A;  3P71 C;  3ZTV A;  5DNY A;  3T1I A;  2NYM C;  4TUI A;  4LU9 A;  4O43 A;  3GVE A;  1UTE A;  2IE4 C;  3K7V C;  1T70 A;  3CK2 A;  3RL4 A;  2A22 A;  4O24 A;  4H2B A;  4O4K A;  1M63 A;  2WDD A;  3IB7 A;  1IT6 A;  3LL8 A;  3H60 A;  5J28 A;  3H66 A;  1USH A;  3C5W C;  4UWQ A;  3RL3 A;  4V0X A;  2QFR A;  3PSO A;  4UT3 A;  4I5L C;  4DHL A;  3QFO A;  2KKN A;  3EGG A;  5HPE A;  4FBW A;  1Z2W A;  1G5B A;  1U32 A;  3RL5 A;  3V4Y A;  1S3L A;  2Q8U A;  1KBP A;  4KBP A;  3THO B;  3DW8 C;  2Z1A A;  3D03 A;  3JYF A;  2R17 A;  2P6B A;  1QFC A;  5JPE A;  1NNW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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