1S3NA

Structural and functional characterization of a novel archaeal phosphodiesterase
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Phosphodiesterase
molecule keywords Hypothetical protein MJ0936
total genus 49
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1s3nA00
4G9JA 4M0VA 3C5WC 5IOHA 4H2FA 2A22A 5JPEA 2WDFA 1Z2XA 1M63A 3H68A 4H2BA 3IB8A 2DFJA 4IYPC 2JOGA 2WDDA 1U32A 1S70A 2GJUA 1UTEA 1QFCA 1JK7A 3AUZA 5EQVA 4ORAA 4JA9A 4DHLA 4FBWA 2IE3C 3H64A 3E7BA 2Q8UA 1W24A 4KBPA 3QFKA 3C9FA 3RL5A 4TUGA 5HPEA 1HPUA 3H63A 2Z06A 3ZTVA 4Q7FA 3KBPA 1SU1A 3N5UA 5INBA 3CK2A 4J6OA 2Z72A 1QHWA 1MF8A 3HVQA 5JJTA 3IVDA 3ICFA 4JA7A 3RL3A 2WDEA 4V0WA 4UT2A 3DSCA 2R17A 5F3WA 1NNWA 2NPPC 4LACC 1XM7A 1FJMA 1V73A 1OIEA 1TCOA 1S3NA 3EGHA 2IE4C 3IB7A 2NXFA 3PSOA 4H2GA 2WDCA 4H1SA 4YKEA 4LU9A 4I5LC 4WWLA 3T1IA 4KKZA 5C1VA 3QFNA 1II7A 3QFOA 4O4KA 3H60A 3QG5C 4H1YP 3THNA 3RL4A 2HYPA 3FGAC 4I5NC 3EGGA 1S3MA 1T71A 1IT6A 2QFRA 3V4YA 3DSDA 1S8EA 2QFPA 2QJCA 4UT3B 2O8GA 3K7VC 3LL8A 4F0ZA 2HYOA 1OIDA 3AV0A 4TUIA 2BQ8X 4V0XA 4UWQA 4OR9A 1USHA 2IAEC 2BCDA 1G5BA 1HO5A 4FCXA 3THOB 2ZBMA 4DT2A 1S3LA 4V0VA 3K7WC 3TGHA 2O8AA 2YVTA 4IL1A 3QFMA 4MOYA 2USHA 4O5GA 4ORBA 4B2OA 2P6BA 4FBKA 4ZX2A 1Z2WA 4UT3A 4ZVZA 5B8IA 2NYLC 1S95A 3E7AA 4NZVA 1OI8A 5DNYA 2HY1A 3JYFA 3H62B 4O43A 4MOVA 3ZU0A 5J28A 4DSYA 1UF3A 2BDXA 2NYMC 3GVEA 1AUIA 1KBPA 3H61A 3PSNA 4LTYA 2AHDA 4H2IA 2CV9A 2XMOA 4HD0A 4XPNA 3DW8C 3H69A 1HP1A 4FBQA 4MP0A 3H67A 1XZWA 1T70A 4ORCA 5JPFA 3RQZA 3IVEA 3H66A 3P71C 1WARA 2KKNA 4O24A 5GTUA 1WAO1 2Z1AA
chains in the Genus database with same CATH superfamily
4G9JA 4M0VA 3C5WC 5IOHA 4H2FA 2A22A 5JPEA 2WDFA 1Z2XA 1M63A 3H68A 4H2BA 3IB8A 2DXLA 2DFJA 4IYPC 2JOGA 2WDDA 1U32A 1S70A 2GJUA 1UTEA 1QFCA 2ZOAA 1JK7A 3AUZA 5EQVA 4ORAA 4JA9A 4DHLA 4FBWA 2IE3C 3H64A 3E7BA 2Q8UA 1W24A 4KBPA 3QFKA 3C9FA 3RL5A 4TUGA 5HPEA 1HPUA 3H63A 2Z06A 3ZTVA 4Q7FA 3KBPA 1SU1A 3N5UA 5INBA 3CK2A 4J6OA 2Z72A 1QHWA 1MF8A 3HVQA 5JJTA 3IVDA 3ICFA 4JA7A 3RL3A 2WDEA 4V0WA 4UT2A 3DSCA 2R17A 5F3WA 1NNWA 2NPPC 4LACC 1XM7A 1FJMA 1V73A 1OIEA 1TCOA 1S3NA 3EGHA 2IE4C 3IB7A 2NXFA 3PSOA 4H2GA 2WDCA 4H1SA 4YKEA 4LU9A 4I5LC 2YEQA 4WWLA 3T1IA 4KKZA 5C1VA 3QFNA 1II7A 3QFOA 4O4KA 3H60A 3QG5C 4H1YP 3THNA 3RL4A 2HYPA 3FGAC 4I5NC 3EGGA 2ZO9B 1S3MA 1T71A 1IT6A 2QFRA 3V4YA 3DSDA 1S8EA 2QFPA 2QJCA 3E0JA 4UT3B 2O8GA 3K7VC 3LL8A 4F0ZA 2HYOA 1OIDA 3AV0A 4TUIA 2BQ8X 4V0XA 4UWQA 4OR9A 1USHA 2IAEC 2BCDA 1G5BA 1HO5A 4FCXA 3THOB 2ZBMA 4DT2A 1S3LA 4V0VA 3K7WC 3TGHA 2O8AA 2YVTA 4IL1A 3QFMA 4MOYA 2USHA 3D03A 4O5GA 4ORBA 4B2OA 2P6BA 4FBKA 4ZX2A 1Z2WA 4UT3A 4ZVZA 5B8IA 2NYLC 1S95A 3E7AA 4NZVA 3FLOA 1OI8A 5DNYA 2HY1A 3JYFA 3H62B 4O43A 4MOVA 3ZU0A 5J28A 4DSYA 1UF3A 2BDXA 2NYMC 3GVEA 1AUIA 1KBPA 3H61A 3PSNA 4LTYA 2AHDA 4H2IA 2CV9A 2XMOA 4HD0A 4XPNA 3DW8C 3H69A 1HP1A 4FBQA 4MP0A 3H67A 1XZWA 1T70A 4ORCA 5JPFA 3RQZA 3IVEA 3H66A 3P71C 1WARA 2KKNA 2DXNA 4O24A 5GTUA 1WAO1 2Z1AA
chains in the Genus database with same CATH topology
4G9JA 4M0VA 3C5WC 5IOHA 4H2FA 2A22A 5JPEA 2WDFA 1Z2XA 1M63A 3H68A 4H2BA 3IB8A 2DXLA 2DFJA 4IYPC 2JOGA 2WDDA 1U32A 1S70A 2GJUA 1UTEA 1QFCA 2ZOAA 1JK7A 3AUZA 5EQVA 4ORAA 4JA9A 4DHLA 4FBWA 2IE3C 3H64A 3E7BA 2Q8UA 1W24A 4KBPA 3QFKA 3C9FA 3RL5A 4TUGA 5HPEA 1HPUA 3H63A 2Z06A 3ZTVA 4Q7FA 3KBPA 1SU1A 3N5UA 5INBA 3CK2A 4J6OA 2Z72A 1QHWA 1MF8A 3HVQA 5JJTA 3IVDA 3ICFA 4JA7A 3RL3A 2WDEA 4V0WA 4UT2A 3DSCA 2R17A 5F3WA 1NNWA 2NPPC 4LACC 1XM7A 1FJMA 1V73A 1OIEA 1TCOA 1S3NA 3EGHA 2IE4C 3IB7A 2NXFA 3PSOA 4H2GA 2WDCA 4H1SA 4YKEA 4LU9A 4I5LC 2YEQA 4WWLA 3T1IA 4KKZA 5C1VA 3QFNA 1II7A 3QFOA 4O4KA 3H60A 3QG5C 4H1YP 3THNA 3RL4A 2HYPA 3FGAC 4I5NC 3EGGA 2ZO9B 1S3MA 1T71A 1IT6A 2QFRA 3V4YA 3DSDA 1S8EA 2QFPA 2QJCA 3E0JA 4UT3B 2O8GA 3K7VC 3LL8A 4F0ZA 2HYOA 1OIDA 3AV0A 4TUIA 2BQ8X 4V0XA 4UWQA 4OR9A 1USHA 2IAEC 2BCDA 1G5BA 1HO5A 4FCXA 3THOB 2ZBMA 4DT2A 1S3LA 4V0VA 3K7WC 3TGHA 2O8AA 2YVTA 4IL1A 3QFMA 4MOYA 2USHA 3D03A 4O5GA 4ORBA 4B2OA 2P6BA 4FBKA 4ZX2A 1Z2WA 4UT3A 4ZVZA 5B8IA 2NYLC 1S95A 3E7AA 4NZVA 3FLOA 1OI8A 5DNYA 2HY1A 3JYFA 3H62B 4O43A 4MOVA 3ZU0A 5J28A 4DSYA 1UF3A 2BDXA 2NYMC 3GVEA 1AUIA 1KBPA 3H61A 3PSNA 4LTYA 2AHDA 4H2IA 2CV9A 2XMOA 4HD0A 4XPNA 3DW8C 3H69A 1HP1A 4FBQA 4MP0A 3H67A 1XZWA 1T70A 4ORCA 5JPFA 3RQZA 3IVEA 3H66A 3P71C 1WARA 2KKNA 2DXNA 4O24A 5GTUA 1WAO1 2Z1AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G9J A;  4M0V A;  3C5W C;  5IOH A;  4H2F A;  2A22 A;  5JPE A;  2WDF A;  1Z2X A;  1M63 A;  3H68 A;  4H2B A;  3IB8 A;  2DFJ A;  4IYP C;  2JOG A;  2WDD A;  1U32 A;  1S70 A;  2GJU A;  1UTE A;  1QFC A;  1JK7 A;  3AUZ A;  5EQV A;  4ORA A;  4JA9 A;  4DHL A;  4FBW A;  2IE3 C;  3H64 A;  3E7B A;  2Q8U A;  1W24 A;  4KBP A;  3QFK A;  3C9F A;  3RL5 A;  4TUG A;  5HPE A;  1HPU A;  3H63 A;  2Z06 A;  3ZTV A;  4Q7F A;  3KBP A;  1SU1 A;  3N5U A;  5INB A;  3CK2 A;  4J6O A;  2Z72 A;  1QHW A;  1MF8 A;  3HVQ A;  5JJT A;  3IVD A;  3ICF A;  4JA7 A;  3RL3 A;  2WDE A;  4V0W A;  4UT2 A;  3DSC A;  2R17 A;  5F3W A;  1NNW A;  2NPP C;  4LAC C;  1XM7 A;  1FJM A;  1V73 A;  1OIE A;  1TCO A;  1S3N A;  3EGH A;  2IE4 C;  3IB7 A;  2NXF A;  3PSO A;  4H2G A;  2WDC A;  4H1S A;  4YKE A;  4LU9 A;  4I5L C;  4WWL A;  3T1I A;  4KKZ A;  5C1V A;  3QFN A;  1II7 A;  3QFO A;  4O4K A;  3H60 A;  3QG5 C;  4H1Y P;  3THN A;  3RL4 A;  2HYP A;  3FGA C;  4I5N C;  3EGG A;  1S3M A;  1T71 A;  1IT6 A;  2QFR A;  3V4Y A;  3DSD A;  1S8E A;  2QFP A;  2QJC A;  4UT3 B;  2O8G A;  3K7V C;  3LL8 A;  4F0Z A;  2HYO A;  1OID A;  3AV0 A;  4TUI A;  2BQ8 X;  4V0X A;  4UWQ A;  4OR9 A;  1USH A;  2IAE C;  2BCD A;  1G5B A;  1HO5 A;  4FCX A;  3THO B;  2ZBM A;  4DT2 A;  1S3L A;  4V0V A;  3K7W C;  3TGH A;  2O8A A;  2YVT A;  4IL1 A;  3QFM A;  4MOY A;  2USH A;  4O5G A;  4ORB A;  4B2O A;  2P6B A;  4FBK A;  4ZX2 A;  1Z2W A;  4UT3 A;  4ZVZ A;  5B8I A;  2NYL C;  1S95 A;  3E7A A;  4NZV A;  1OI8 A;  5DNY A;  2HY1 A;  3JYF A;  3H62 B;  4O43 A;  4MOV A;  3ZU0 A;  5J28 A;  4DSY A;  1UF3 A;  2BDX A;  2NYM C;  3GVE A;  1AUI A;  1KBP A;  3H61 A;  3PSN A;  4LTY A;  2AHD A;  4H2I A;  2CV9 A;  2XMO A;  4HD0 A;  4XPN A;  3DW8 C;  3H69 A;  1HP1 A;  4FBQ A;  4MP0 A;  3H67 A;  1XZW A;  1T70 A;  4ORC A;  5JPF A;  3RQZ A;  3IVE A;  3H66 A;  3P71 C;  1WAR A;  2KKN A;  4O24 A;  5GTU A;  1WAO 1;  2Z1A A; 
#chains in the Genus database with same CATH topology
 4G9J A;  4M0V A;  3C5W C;  5IOH A;  4H2F A;  2A22 A;  5JPE A;  2WDF A;  1Z2X A;  1M63 A;  3H68 A;  4H2B A;  3IB8 A;  2DXL A;  2DFJ A;  4IYP C;  2JOG A;  2WDD A;  1U32 A;  1S70 A;  2GJU A;  1UTE A;  1QFC A;  2ZOA A;  1JK7 A;  3AUZ A;  5EQV A;  4ORA A;  4JA9 A;  4DHL A;  4FBW A;  2IE3 C;  3H64 A;  3E7B A;  2Q8U A;  1W24 A;  4KBP A;  3QFK A;  3C9F A;  3RL5 A;  4TUG A;  5HPE A;  1HPU A;  3H63 A;  2Z06 A;  3ZTV A;  4Q7F A;  3KBP A;  1SU1 A;  3N5U A;  5INB A;  3CK2 A;  4J6O A;  2Z72 A;  1QHW A;  1MF8 A;  3HVQ A;  5JJT A;  3IVD A;  3ICF A;  4JA7 A;  3RL3 A;  2WDE A;  4V0W A;  4UT2 A;  3DSC A;  2R17 A;  5F3W A;  1NNW A;  2NPP C;  4LAC C;  1XM7 A;  1FJM A;  1V73 A;  1OIE A;  1TCO A;  1S3N A;  3EGH A;  2IE4 C;  3IB7 A;  2NXF A;  3PSO A;  4H2G A;  2WDC A;  4H1S A;  4YKE A;  4LU9 A;  4I5L C;  2YEQ A;  4WWL A;  3T1I A;  4KKZ A;  5C1V A;  3QFN A;  1II7 A;  3QFO A;  4O4K A;  3H60 A;  3QG5 C;  4H1Y P;  3THN A;  3RL4 A;  2HYP A;  3FGA C;  4I5N C;  3EGG A;  2ZO9 B;  1S3M A;  1T71 A;  1IT6 A;  2QFR A;  3V4Y A;  3DSD A;  1S8E A;  2QFP A;  2QJC A;  3E0J A;  4UT3 B;  2O8G A;  3K7V C;  3LL8 A;  4F0Z A;  2HYO A;  1OID A;  3AV0 A;  4TUI A;  2BQ8 X;  4V0X A;  4UWQ A;  4OR9 A;  1USH A;  2IAE C;  2BCD A;  1G5B A;  1HO5 A;  4FCX A;  3THO B;  2ZBM A;  4DT2 A;  1S3L A;  4V0V A;  3K7W C;  3TGH A;  2O8A A;  2YVT A;  4IL1 A;  3QFM A;  4MOY A;  2USH A;  3D03 A;  4O5G A;  4ORB A;  4B2O A;  2P6B A;  4FBK A;  4ZX2 A;  1Z2W A;  4UT3 A;  4ZVZ A;  5B8I A;  2NYL C;  1S95 A;  3E7A A;  4NZV A;  3FLO A;  1OI8 A;  5DNY A;  2HY1 A;  3JYF A;  3H62 B;  4O43 A;  4MOV A;  3ZU0 A;  5J28 A;  4DSY A;  1UF3 A;  2BDX A;  2NYM C;  3GVE A;  1AUI A;  1KBP A;  3H61 A;  3PSN A;  4LTY A;  2AHD A;  4H2I A;  2CV9 A;  2XMO A;  4HD0 A;  4XPN A;  3DW8 C;  3H69 A;  1HP1 A;  4FBQ A;  4MP0 A;  3H67 A;  1XZW A;  1T70 A;  4ORC A;  5JPF A;  3RQZ A;  3IVE A;  3H66 A;  3P71 C;  1WAR A;  2KKN A;  2DXN A;  4O24 A;  5GTU A;  1WAO 1;  2Z1A A; 
#chains in the Genus database with same CATH homology
 4G9J A;  4M0V A;  3C5W C;  5IOH A;  4H2F A;  2A22 A;  5JPE A;  2WDF A;  1Z2X A;  1M63 A;  3H68 A;  4H2B A;  3IB8 A;  2DXL A;  2DFJ A;  4IYP C;  2JOG A;  2WDD A;  1U32 A;  1S70 A;  2GJU A;  1UTE A;  1QFC A;  2ZOA A;  1JK7 A;  3AUZ A;  5EQV A;  4ORA A;  4JA9 A;  4DHL A;  4FBW A;  2IE3 C;  3H64 A;  3E7B A;  2Q8U A;  1W24 A;  4KBP A;  3QFK A;  3C9F A;  3RL5 A;  4TUG A;  5HPE A;  1HPU A;  3H63 A;  2Z06 A;  3ZTV A;  4Q7F A;  3KBP A;  1SU1 A;  3N5U A;  5INB A;  3CK2 A;  4J6O A;  2Z72 A;  1QHW A;  1MF8 A;  3HVQ A;  5JJT A;  3IVD A;  3ICF A;  4JA7 A;  3RL3 A;  2WDE A;  4V0W A;  4UT2 A;  3DSC A;  2R17 A;  5F3W A;  1NNW A;  2NPP C;  4LAC C;  1XM7 A;  1FJM A;  1V73 A;  1OIE A;  1TCO A;  1S3N A;  3EGH A;  2IE4 C;  3IB7 A;  2NXF A;  3PSO A;  4H2G A;  2WDC A;  4H1S A;  4YKE A;  4LU9 A;  4I5L C;  2YEQ A;  4WWL A;  3T1I A;  4KKZ A;  5C1V A;  3QFN A;  1II7 A;  3QFO A;  4O4K A;  3H60 A;  3QG5 C;  4H1Y P;  3THN A;  3RL4 A;  2HYP A;  3FGA C;  4I5N C;  3EGG A;  2ZO9 B;  1S3M A;  1T71 A;  1IT6 A;  2QFR A;  3V4Y A;  3DSD A;  1S8E A;  2QFP A;  2QJC A;  3E0J A;  4UT3 B;  2O8G A;  3K7V C;  3LL8 A;  4F0Z A;  2HYO A;  1OID A;  3AV0 A;  4TUI A;  2BQ8 X;  4V0X A;  4UWQ A;  4OR9 A;  1USH A;  2IAE C;  2BCD A;  1G5B A;  1HO5 A;  4FCX A;  3THO B;  2ZBM A;  4DT2 A;  1S3L A;  4V0V A;  3K7W C;  3TGH A;  2O8A A;  2YVT A;  4IL1 A;  3QFM A;  4MOY A;  2USH A;  3D03 A;  4O5G A;  4ORB A;  4B2O A;  2P6B A;  4FBK A;  4ZX2 A;  1Z2W A;  4UT3 A;  4ZVZ A;  5B8I A;  2NYL C;  1S95 A;  3E7A A;  4NZV A;  3FLO A;  1OI8 A;  5DNY A;  2HY1 A;  3JYF A;  3H62 B;  4O43 A;  4MOV A;  3ZU0 A;  5J28 A;  4DSY A;  1UF3 A;  2BDX A;  2NYM C;  3GVE A;  1AUI A;  1KBP A;  3H61 A;  3PSN A;  4LTY A;  2AHD A;  4H2I A;  2CV9 A;  2XMO A;  4HD0 A;  4XPN A;  3DW8 C;  3H69 A;  1HP1 A;  4FBQ A;  4MP0 A;  3H67 A;  1XZW A;  1T70 A;  4ORC A;  5JPF A;  3RQZ A;  3IVE A;  3H66 A;  3P71 C;  1WAR A;  2KKN A;  2DXN A;  4O24 A;  5GTU A;  1WAO 1;  2Z1A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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