1S3NA

Structural and functional characterization of a novel archaeal phosphodiesterase
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphodiesterase
molecule keywords Hypothetical protein MJ0936
publication title Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 49
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1s3nA00
4HD0A 3IVEA 1S3LA 2WDDA 4MOVA 2IE4C 2WDCA 1SU1A 4ORBA 2IE3C 4H2IA 4M0VA 1T70A 4KKZA 1MF8A 1UTEA 4NZVA 5JJTA 2JOGA 3RL5A 1HP1A 3N5UA 3IB8A 1S95A 1WAO1 2Q8UA 1XZWA 4ZX2A 5GTUA 4V0XA 4WWLA 4TUIA 2QJCA 2Z72A 1V73A 2DFJA 3H61A 2BDXA 2AHDA 4YKEA 4H2GA 1WARA 3T1IA 4H2BA 2KKNA 4B2OA 3THNA 4O24A 2WDEA 3H64A 2QFPA 5DNYA 3ZU0A 3KBPA 4DT2A 4H2FA 3DSCA 3H69A 3K7VC 3ICFA 3GVEA 2NYMC 3EGHA 4ZVZA 1OIDA 4FBWA 1OI8A 1QFCA 5C1VA 1W24A 3DSDA 3FGAC 3AUZA 2YVTA 4IL1A 1AUIA 3IB7A 1QHWA 3H62B 3H63A 1M63A 4UT2A 3QFNA 3DW8C 1HO5A 4H1SA 4UT3B 2P6BA 3E7AA 4O5GA 3JYFA 3RQZA 4UT3A 4Q7FA 1II7A 2XMOA 2USHA 5IOHA 2R17A 4LU9A 3PSNA 4G9JA 2Z06A 3E7BA 3PSOA 3ZTVA 1G5BA 4LACC 1S8EA 3HVQA 4DHLA 1Z2XA 1UF3A 2BQ8X 3RL4A 2O8GA 4XPNA 5EQVA 1TCOA 5JPEA 5JPFA 4I5LC 2Z1AA 3AV0A 3C5WC 1NNWA 2IAEC 4FCXA 4O43A 5J28A 2HYOA 3H60A 2GJUA 2BCDA 3EGGA 2HYPA 4J6OA 3K7WC 1XM7A 4IYPC 4FBQA 3C9FA 3H67A 4UWQA 5HPEA 4V0WA 1U32A 4I5NC 1FJMA 3QG5C 4V0VA 1USHA 2ZBMA 3V4YA 4TUGA 3CK2A 2A22A 1KBPA 1Z2WA 4O4KA 2NPPC 5B8IA 1T71A 2WDFA 4ORAA 4H1YP 1OIEA 1S3MA 4DSYA 5INBA 2NXFA 4F0ZA 3QFOA 4FBKA 2QFRA 3LL8A 1S3NA 2CV9A 3QFKA 4KBPA 1HPUA 1JK7A 4ORCA 1S70A 3TGHA 1IT6A 3P71C 4JA7A 4JA9A 3THOB 3H66A 2O8AA 5F3WA 3IVDA 4OR9A 3H68A 2HY1A 3RL3A 4LTYA 3QFMA 4MP0A 2NYLC 4MOYA
chains in the Genus database with same CATH superfamily
4HD0A 3IVEA 1S3LA 2WDDA 4MOVA 2IE4C 2WDCA 1SU1A 4ORBA 2IE3C 4H2IA 2DXLA 4M0VA 1T70A 4KKZA 1MF8A 1UTEA 4NZVA 5JJTA 2JOGA 3RL5A 1HP1A 3N5UA 3IB8A 3E0JA 1S95A 1WAO1 2Q8UA 1XZWA 4ZX2A 5GTUA 4V0XA 4WWLA 4TUIA 2QJCA 2Z72A 1V73A 2DFJA 3H61A 2BDXA 2AHDA 4YKEA 4H2GA 1WARA 3T1IA 4H2BA 2DXNA 2KKNA 4B2OA 3THNA 4O24A 2WDEA 3H64A 2QFPA 5DNYA 3ZU0A 2YEQA 3KBPA 4DT2A 4H2FA 3DSCA 3H69A 3K7VC 3ICFA 3GVEA 2NYMC 3EGHA 4ZVZA 1OIDA 4FBWA 1OI8A 1QFCA 5C1VA 1W24A 3DSDA 3FGAC 3AUZA 2YVTA 4IL1A 1AUIA 3IB7A 1QHWA 3H62B 3H63A 1M63A 4UT2A 3QFNA 3DW8C 1HO5A 4H1SA 4UT3B 2P6BA 3E7AA 4O5GA 3JYFA 3RQZA 4UT3A 4Q7FA 1II7A 3FLOA 2XMOA 2USHA 5IOHA 2R17A 4LU9A 3PSNA 4G9JA 2Z06A 3E7BA 3PSOA 3ZTVA 1G5BA 4LACC 1S8EA 3HVQA 4DHLA 1Z2XA 1UF3A 2BQ8X 3RL4A 2O8GA 4XPNA 5EQVA 1TCOA 5JPEA 5JPFA 4I5LC 2Z1AA 3AV0A 3C5WC 1NNWA 2IAEC 4FCXA 4O43A 5J28A 2HYOA 3H60A 2GJUA 2BCDA 3EGGA 2HYPA 4J6OA 3K7WC 1XM7A 4IYPC 4FBQA 3C9FA 3H67A 4UWQA 5HPEA 4V0WA 1U32A 4I5NC 1FJMA 3QG5C 4V0VA 1USHA 2ZO9B 2ZBMA 3V4YA 4TUGA 2ZOAA 3CK2A 2A22A 1KBPA 1Z2WA 4O4KA 2NPPC 5B8IA 1T71A 2WDFA 4ORAA 4H1YP 1OIEA 1S3MA 4DSYA 5INBA 2NXFA 4F0ZA 3QFOA 4FBKA 2QFRA 3LL8A 1S3NA 2CV9A 3QFKA 4KBPA 1HPUA 1JK7A 4ORCA 1S70A 3TGHA 1IT6A 3P71C 4JA7A 4JA9A 3THOB 3H66A 2O8AA 5F3WA 3IVDA 4OR9A 3H68A 2HY1A 3RL3A 4LTYA 3QFMA 4MP0A 2NYLC 4MOYA 3D03A
chains in the Genus database with same CATH topology
4HD0A 3IVEA 1S3LA 2WDDA 4MOVA 2IE4C 2WDCA 1SU1A 4ORBA 2IE3C 4H2IA 2DXLA 4M0VA 1T70A 4KKZA 1MF8A 1UTEA 4NZVA 5JJTA 2JOGA 3RL5A 1HP1A 3N5UA 3IB8A 3E0JA 1S95A 1WAO1 2Q8UA 1XZWA 4ZX2A 5GTUA 4V0XA 4WWLA 4TUIA 2QJCA 2Z72A 1V73A 2DFJA 3H61A 2BDXA 2AHDA 4YKEA 4H2GA 1WARA 3T1IA 4H2BA 2DXNA 2KKNA 4B2OA 3THNA 4O24A 2WDEA 3H64A 2QFPA 5DNYA 3ZU0A 2YEQA 3KBPA 4DT2A 4H2FA 3DSCA 3H69A 3K7VC 3ICFA 3GVEA 2NYMC 3EGHA 4ZVZA 1OIDA 4FBWA 1OI8A 1QFCA 5C1VA 1W24A 3DSDA 3FGAC 3AUZA 2YVTA 4IL1A 1AUIA 3IB7A 1QHWA 3H62B 3H63A 1M63A 4UT2A 3QFNA 3DW8C 1HO5A 4H1SA 4UT3B 2P6BA 3E7AA 4O5GA 3JYFA 3RQZA 4UT3A 4Q7FA 1II7A 3FLOA 2XMOA 2USHA 5IOHA 2R17A 4LU9A 3PSNA 4G9JA 2Z06A 3E7BA 3PSOA 3ZTVA 1G5BA 4LACC 1S8EA 3HVQA 4DHLA 1Z2XA 1UF3A 2BQ8X 3RL4A 2O8GA 4XPNA 5EQVA 1TCOA 5JPEA 5JPFA 4I5LC 2Z1AA 3AV0A 3C5WC 1NNWA 2IAEC 4FCXA 4O43A 5J28A 2HYOA 3H60A 2GJUA 2BCDA 3EGGA 2HYPA 4J6OA 3K7WC 1XM7A 4IYPC 4FBQA 3C9FA 3H67A 4UWQA 5HPEA 4V0WA 1U32A 4I5NC 1FJMA 3QG5C 4V0VA 1USHA 2ZO9B 2ZBMA 3V4YA 4TUGA 2ZOAA 3CK2A 2A22A 1KBPA 1Z2WA 4O4KA 2NPPC 5B8IA 1T71A 2WDFA 4ORAA 4H1YP 1OIEA 1S3MA 4DSYA 5INBA 2NXFA 4F0ZA 3QFOA 4FBKA 2QFRA 3LL8A 1S3NA 2CV9A 3QFKA 4KBPA 1HPUA 1JK7A 4ORCA 1S70A 3TGHA 1IT6A 3P71C 4JA7A 4JA9A 3THOB 3H66A 2O8AA 5F3WA 3IVDA 4OR9A 3H68A 2HY1A 3RL3A 4LTYA 3QFMA 4MP0A 2NYLC 4MOYA 3D03A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HD0 A;  3IVE A;  1S3L A;  2WDD A;  4MOV A;  2IE4 C;  2WDC A;  1SU1 A;  4ORB A;  2IE3 C;  4H2I A;  4M0V A;  1T70 A;  4KKZ A;  1MF8 A;  1UTE A;  4NZV A;  5JJT A;  2JOG A;  3RL5 A;  1HP1 A;  3N5U A;  3IB8 A;  1S95 A;  1WAO 1;  2Q8U A;  1XZW A;  4ZX2 A;  5GTU A;  4V0X A;  4WWL A;  4TUI A;  2QJC A;  2Z72 A;  1V73 A;  2DFJ A;  3H61 A;  2BDX A;  2AHD A;  4YKE A;  4H2G A;  1WAR A;  3T1I A;  4H2B A;  2KKN A;  4B2O A;  3THN A;  4O24 A;  2WDE A;  3H64 A;  2QFP A;  5DNY A;  3ZU0 A;  3KBP A;  4DT2 A;  4H2F A;  3DSC A;  3H69 A;  3K7V C;  3ICF A;  3GVE A;  2NYM C;  3EGH A;  4ZVZ A;  1OID A;  4FBW A;  1OI8 A;  1QFC A;  5C1V A;  1W24 A;  3DSD A;  3FGA C;  3AUZ A;  2YVT A;  4IL1 A;  1AUI A;  3IB7 A;  1QHW A;  3H62 B;  3H63 A;  1M63 A;  4UT2 A;  3QFN A;  3DW8 C;  1HO5 A;  4H1S A;  4UT3 B;  2P6B A;  3E7A A;  4O5G A;  3JYF A;  3RQZ A;  4UT3 A;  4Q7F A;  1II7 A;  2XMO A;  2USH A;  5IOH A;  2R17 A;  4LU9 A;  3PSN A;  4G9J A;  2Z06 A;  3E7B A;  3PSO A;  3ZTV A;  1G5B A;  4LAC C;  1S8E A;  3HVQ A;  4DHL A;  1Z2X A;  1UF3 A;  2BQ8 X;  3RL4 A;  2O8G A;  4XPN A;  5EQV A;  1TCO A;  5JPE A;  5JPF A;  4I5L C;  2Z1A A;  3AV0 A;  3C5W C;  1NNW A;  2IAE C;  4FCX A;  4O43 A;  5J28 A;  2HYO A;  3H60 A;  2GJU A;  2BCD A;  3EGG A;  2HYP A;  4J6O A;  3K7W C;  1XM7 A;  4IYP C;  4FBQ A;  3C9F A;  3H67 A;  4UWQ A;  5HPE A;  4V0W A;  1U32 A;  4I5N C;  1FJM A;  3QG5 C;  4V0V A;  1USH A;  2ZBM A;  3V4Y A;  4TUG A;  3CK2 A;  2A22 A;  1KBP A;  1Z2W A;  4O4K A;  2NPP C;  5B8I A;  1T71 A;  2WDF A;  4ORA A;  4H1Y P;  1OIE A;  1S3M A;  4DSY A;  5INB A;  2NXF A;  4F0Z A;  3QFO A;  4FBK A;  2QFR A;  3LL8 A;  1S3N A;  2CV9 A;  3QFK A;  4KBP A;  1HPU A;  1JK7 A;  4ORC A;  1S70 A;  3TGH A;  1IT6 A;  3P71 C;  4JA7 A;  4JA9 A;  3THO B;  3H66 A;  2O8A A;  5F3W A;  3IVD A;  4OR9 A;  3H68 A;  2HY1 A;  3RL3 A;  4LTY A;  3QFM A;  4MP0 A;  2NYL C;  4MOY A; 
#chains in the Genus database with same CATH topology
 4HD0 A;  3IVE A;  1S3L A;  2WDD A;  4MOV A;  2IE4 C;  2WDC A;  1SU1 A;  4ORB A;  2IE3 C;  4H2I A;  2DXL A;  4M0V A;  1T70 A;  4KKZ A;  1MF8 A;  1UTE A;  4NZV A;  5JJT A;  2JOG A;  3RL5 A;  1HP1 A;  3N5U A;  3IB8 A;  3E0J A;  1S95 A;  1WAO 1;  2Q8U A;  1XZW A;  4ZX2 A;  5GTU A;  4V0X A;  4WWL A;  4TUI A;  2QJC A;  2Z72 A;  1V73 A;  2DFJ A;  3H61 A;  2BDX A;  2AHD A;  4YKE A;  4H2G A;  1WAR A;  3T1I A;  4H2B A;  2DXN A;  2KKN A;  4B2O A;  3THN A;  4O24 A;  2WDE A;  3H64 A;  2QFP A;  5DNY A;  3ZU0 A;  2YEQ A;  3KBP A;  4DT2 A;  4H2F A;  3DSC A;  3H69 A;  3K7V C;  3ICF A;  3GVE A;  2NYM C;  3EGH A;  4ZVZ A;  1OID A;  4FBW A;  1OI8 A;  1QFC A;  5C1V A;  1W24 A;  3DSD A;  3FGA C;  3AUZ A;  2YVT A;  4IL1 A;  1AUI A;  3IB7 A;  1QHW A;  3H62 B;  3H63 A;  1M63 A;  4UT2 A;  3QFN A;  3DW8 C;  1HO5 A;  4H1S A;  4UT3 B;  2P6B A;  3E7A A;  4O5G A;  3JYF A;  3RQZ A;  4UT3 A;  4Q7F A;  1II7 A;  3FLO A;  2XMO A;  2USH A;  5IOH A;  2R17 A;  4LU9 A;  3PSN A;  4G9J A;  2Z06 A;  3E7B A;  3PSO A;  3ZTV A;  1G5B A;  4LAC C;  1S8E A;  3HVQ A;  4DHL A;  1Z2X A;  1UF3 A;  2BQ8 X;  3RL4 A;  2O8G A;  4XPN A;  5EQV A;  1TCO A;  5JPE A;  5JPF A;  4I5L C;  2Z1A A;  3AV0 A;  3C5W C;  1NNW A;  2IAE C;  4FCX A;  4O43 A;  5J28 A;  2HYO A;  3H60 A;  2GJU A;  2BCD A;  3EGG A;  2HYP A;  4J6O A;  3K7W C;  1XM7 A;  4IYP C;  4FBQ A;  3C9F A;  3H67 A;  4UWQ A;  5HPE A;  4V0W A;  1U32 A;  4I5N C;  1FJM A;  3QG5 C;  4V0V A;  1USH A;  2ZO9 B;  2ZBM A;  3V4Y A;  4TUG A;  2ZOA A;  3CK2 A;  2A22 A;  1KBP A;  1Z2W A;  4O4K A;  2NPP C;  5B8I A;  1T71 A;  2WDF A;  4ORA A;  4H1Y P;  1OIE A;  1S3M A;  4DSY A;  5INB A;  2NXF A;  4F0Z A;  3QFO A;  4FBK A;  2QFR A;  3LL8 A;  1S3N A;  2CV9 A;  3QFK A;  4KBP A;  1HPU A;  1JK7 A;  4ORC A;  1S70 A;  3TGH A;  1IT6 A;  3P71 C;  4JA7 A;  4JA9 A;  3THO B;  3H66 A;  2O8A A;  5F3W A;  3IVD A;  4OR9 A;  3H68 A;  2HY1 A;  3RL3 A;  4LTY A;  3QFM A;  4MP0 A;  2NYL C;  4MOY A;  3D03 A; 
#chains in the Genus database with same CATH homology
 4HD0 A;  3IVE A;  1S3L A;  2WDD A;  4MOV A;  2IE4 C;  2WDC A;  1SU1 A;  4ORB A;  2IE3 C;  4H2I A;  2DXL A;  4M0V A;  1T70 A;  4KKZ A;  1MF8 A;  1UTE A;  4NZV A;  5JJT A;  2JOG A;  3RL5 A;  1HP1 A;  3N5U A;  3IB8 A;  3E0J A;  1S95 A;  1WAO 1;  2Q8U A;  1XZW A;  4ZX2 A;  5GTU A;  4V0X A;  4WWL A;  4TUI A;  2QJC A;  2Z72 A;  1V73 A;  2DFJ A;  3H61 A;  2BDX A;  2AHD A;  4YKE A;  4H2G A;  1WAR A;  3T1I A;  4H2B A;  2DXN A;  2KKN A;  4B2O A;  3THN A;  4O24 A;  2WDE A;  3H64 A;  2QFP A;  5DNY A;  3ZU0 A;  2YEQ A;  3KBP A;  4DT2 A;  4H2F A;  3DSC A;  3H69 A;  3K7V C;  3ICF A;  3GVE A;  2NYM C;  3EGH A;  4ZVZ A;  1OID A;  4FBW A;  1OI8 A;  1QFC A;  5C1V A;  1W24 A;  3DSD A;  3FGA C;  3AUZ A;  2YVT A;  4IL1 A;  1AUI A;  3IB7 A;  1QHW A;  3H62 B;  3H63 A;  1M63 A;  4UT2 A;  3QFN A;  3DW8 C;  1HO5 A;  4H1S A;  4UT3 B;  2P6B A;  3E7A A;  4O5G A;  3JYF A;  3RQZ A;  4UT3 A;  4Q7F A;  1II7 A;  3FLO A;  2XMO A;  2USH A;  5IOH A;  2R17 A;  4LU9 A;  3PSN A;  4G9J A;  2Z06 A;  3E7B A;  3PSO A;  3ZTV A;  1G5B A;  4LAC C;  1S8E A;  3HVQ A;  4DHL A;  1Z2X A;  1UF3 A;  2BQ8 X;  3RL4 A;  2O8G A;  4XPN A;  5EQV A;  1TCO A;  5JPE A;  5JPF A;  4I5L C;  2Z1A A;  3AV0 A;  3C5W C;  1NNW A;  2IAE C;  4FCX A;  4O43 A;  5J28 A;  2HYO A;  3H60 A;  2GJU A;  2BCD A;  3EGG A;  2HYP A;  4J6O A;  3K7W C;  1XM7 A;  4IYP C;  4FBQ A;  3C9F A;  3H67 A;  4UWQ A;  5HPE A;  4V0W A;  1U32 A;  4I5N C;  1FJM A;  3QG5 C;  4V0V A;  1USH A;  2ZO9 B;  2ZBM A;  3V4Y A;  4TUG A;  2ZOA A;  3CK2 A;  2A22 A;  1KBP A;  1Z2W A;  4O4K A;  2NPP C;  5B8I A;  1T71 A;  2WDF A;  4ORA A;  4H1Y P;  1OIE A;  1S3M A;  4DSY A;  5INB A;  2NXF A;  4F0Z A;  3QFO A;  4FBK A;  2QFR A;  3LL8 A;  1S3N A;  2CV9 A;  3QFK A;  4KBP A;  1HPU A;  1JK7 A;  4ORC A;  1S70 A;  3TGH A;  1IT6 A;  3P71 C;  4JA7 A;  4JA9 A;  3THO B;  3H66 A;  2O8A A;  5F3W A;  3IVD A;  4OR9 A;  3H68 A;  2HY1 A;  3RL3 A;  4LTY A;  3QFM A;  4MP0 A;  2NYL C;  4MOY A;  3D03 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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