1Z2WA

Crystal structure of mouse vps29 complexed with mn2+
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
pubmed doi rcsb
source organism Mus musculus
molecule tags Protein transport
molecule keywords Vacuolar protein sorting 29
total genus 45
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1z2wA00
1V73A 1Z2WA 3RL4A 3E7AA 4FBQA 4F0ZA 2WDFA 3AV0A 4I5LC 3CK2A 1S95A 4IYPC 4IL1A 3RQZA 4Q7FA 4M0VA 4XPNA 3DW8C 1OIEA 3EGGA 1II7A 1HP1A 3H61A 4UT3B 2XMOA 4NZVA 3QFMA 4H2IA 1QFCA 3KBPA 1S3LA 2A22A 4ZVZA 3THNA 5IOHA 1UF3A 1FJMA 1QHWA 2O8GA 2Q8UA 2IE4C 3K7WC 5JJTA 2NPPC 2JOGA 3QFKA 2YVTA 2QFPA 3GVEA 1T71A 3P71C 5C1VA 5EQVA 2AHDA 4V0WA 2O8AA 4H1SA 4O43A 3T1IA 3ZU0A 4WWLA 1IT6A 3IVDA 3IVEA 4JA7A 4B2OA 5JPFA 3H60A 3H69A 2NYMC 4DHLA 3LL8A 4O24A 4FCXA 5INBA 4MOVA 1XZWA 4H1YP 5GTUA 2BDXA 2IAEC 3JYFA 3IB7A 3ZTVA 3AUZA 5DNYA 1OI8A 5JPEA 3RL3A 4LTYA 1SU1A 3RL5A 5J28A 4H2FA 2Z72A 2IE3C 1G5BA 2GJUA 4ZX2A 2BQ8X 4O4KA 1W24A 3DSCA 1S3NA 4I5NC 3N5UA 4KBPA 4DSYA 3E7BA 3H66A 1WAO1 4V0XA 4HD0A 2QFRA 2KKNA 4H2GA 4JA9A 4LACC 1WARA 2NYLC 3PSOA 3H62B 4O5GA 4G9JA 3EGHA 2WDEA 5F3WA 1HPUA 1OIDA 4DT2A 3QFOA 5B8IA 3QG5C 1MF8A 2WDDA 3HVQA 5HPEA 4ORAA 2WDCA 1XM7A 4J6OA 3DSDA 4OR9A 4FBKA 1M63A 2USHA 2P6BA 1TCOA 3H68A 3ICFA 2NXFA 1S70A 4TUIA 1JK7A 1U32A 1T70A 2CV9A 3C9FA 2HYOA 4UT2A 2ZBMA 3QFNA 2HY1A 3TGHA 4ORCA 3H67A 4H2BA 4YKEA 4V0VA 3V4YA 2DFJA 2HYPA 1AUIA 4ORBA 4FBWA 1USHA 2QJCA 1NNWA 1HO5A 2Z06A 4KKZA 1Z2XA 1S3MA 4UWQA 4LU9A 1UTEA 3C5WC 2BCDA 3K7VC 3FGAC 3H63A 2R17A 3PSNA 4MP0A 4TUGA 2Z1AA 1S8EA 4MOYA 4UT3A 1KBPA 3THOB 3IB8A 3H64A
chains in the Genus database with same CATH superfamily
1V73A 1Z2WA 3RL4A 2DXLA 3E7AA 4FBQA 4F0ZA 2WDFA 3AV0A 4I5LC 3CK2A 1S95A 4IYPC 4IL1A 3RQZA 4Q7FA 4M0VA 4XPNA 3DW8C 1OIEA 3EGGA 1II7A 1HP1A 3H61A 4UT3B 2XMOA 4NZVA 3QFMA 4H2IA 1QFCA 3KBPA 1S3LA 2A22A 4ZVZA 3THNA 5IOHA 1UF3A 1FJMA 1QHWA 2O8GA 2Q8UA 2IE4C 3K7WC 5JJTA 2NPPC 2JOGA 3QFKA 2YVTA 2QFPA 3GVEA 1T71A 3P71C 5C1VA 5EQVA 2AHDA 4V0WA 2O8AA 4H1SA 4O43A 3T1IA 3ZU0A 4WWLA 1IT6A 3IVDA 3IVEA 4JA7A 4B2OA 5JPFA 3H60A 2ZO9B 2NYMC 3H69A 4DHLA 3LL8A 4O24A 4FCXA 5INBA 4MOVA 1XZWA 4H1YP 5GTUA 2YEQA 2BDXA 2IAEC 3JYFA 3IB7A 3ZTVA 3AUZA 5DNYA 1OI8A 5JPEA 3RL3A 4LTYA 1SU1A 3FLOA 3RL5A 5J28A 4H2FA 2Z72A 2IE3C 1G5BA 2GJUA 4ZX2A 2BQ8X 4O4KA 1W24A 3D03A 3DSCA 1S3NA 4I5NC 3N5UA 4KBPA 4DSYA 3E7BA 3H66A 1WAO1 4V0XA 4HD0A 2QFRA 2KKNA 4H2GA 4JA9A 4LACC 1WARA 2NYLC 3PSOA 3H62B 4O5GA 4G9JA 3EGHA 2WDEA 5F3WA 1HPUA 1OIDA 4DT2A 3QFOA 5B8IA 3QG5C 1MF8A 2WDDA 3HVQA 5HPEA 4ORAA 2WDCA 1XM7A 4J6OA 3DSDA 4OR9A 4FBKA 1M63A 2USHA 2ZOAA 2P6BA 1TCOA 3H68A 3ICFA 2NXFA 1S70A 4TUIA 1JK7A 1U32A 1T70A 3E0JA 2CV9A 3C9FA 2HYOA 2DXNA 4UT2A 2ZBMA 3QFNA 2HY1A 3TGHA 4ORCA 3H67A 4H2BA 4YKEA 4V0VA 3V4YA 2DFJA 2HYPA 1AUIA 4ORBA 4FBWA 1USHA 2QJCA 1NNWA 1HO5A 2Z06A 4KKZA 1Z2XA 1S3MA 4UWQA 4LU9A 1UTEA 3C5WC 2BCDA 3K7VC 3FGAC 3H63A 2R17A 3PSNA 4MP0A 4TUGA 2Z1AA 1S8EA 4MOYA 4UT3A 1KBPA 3THOB 3IB8A 3H64A
chains in the Genus database with same CATH topology
1V73A 1Z2WA 3RL4A 2DXLA 3E7AA 4FBQA 4F0ZA 2WDFA 3AV0A 4I5LC 3CK2A 1S95A 4IYPC 4IL1A 3RQZA 4Q7FA 4M0VA 4XPNA 3DW8C 1OIEA 3EGGA 1II7A 1HP1A 3H61A 4UT3B 2XMOA 4NZVA 3QFMA 4H2IA 1QFCA 3KBPA 1S3LA 2A22A 4ZVZA 3THNA 5IOHA 1UF3A 1FJMA 1QHWA 2O8GA 2Q8UA 2IE4C 3K7WC 5JJTA 2NPPC 2JOGA 3QFKA 2YVTA 2QFPA 3GVEA 1T71A 3P71C 5C1VA 5EQVA 2AHDA 4V0WA 2O8AA 4H1SA 4O43A 3T1IA 3ZU0A 4WWLA 1IT6A 3IVDA 3IVEA 4JA7A 4B2OA 5JPFA 3H60A 2ZO9B 2NYMC 3H69A 4DHLA 3LL8A 4O24A 4FCXA 5INBA 4MOVA 1XZWA 4H1YP 5GTUA 2YEQA 2BDXA 2IAEC 3JYFA 3IB7A 3ZTVA 3AUZA 5DNYA 1OI8A 5JPEA 3RL3A 4LTYA 1SU1A 3FLOA 3RL5A 5J28A 4H2FA 2Z72A 2IE3C 1G5BA 2GJUA 4ZX2A 2BQ8X 4O4KA 1W24A 3D03A 3DSCA 1S3NA 4I5NC 3N5UA 4KBPA 4DSYA 3E7BA 3H66A 1WAO1 4V0XA 4HD0A 2QFRA 2KKNA 4H2GA 4JA9A 4LACC 1WARA 2NYLC 3PSOA 3H62B 4O5GA 4G9JA 3EGHA 2WDEA 5F3WA 1HPUA 1OIDA 4DT2A 3QFOA 5B8IA 3QG5C 1MF8A 2WDDA 3HVQA 5HPEA 4ORAA 2WDCA 1XM7A 4J6OA 3DSDA 4OR9A 4FBKA 1M63A 2USHA 2ZOAA 2P6BA 1TCOA 3H68A 3ICFA 2NXFA 1S70A 4TUIA 1JK7A 1U32A 1T70A 3E0JA 2CV9A 3C9FA 2HYOA 2DXNA 4UT2A 2ZBMA 3QFNA 2HY1A 3TGHA 4ORCA 3H67A 4H2BA 4YKEA 4V0VA 3V4YA 2DFJA 2HYPA 1AUIA 4ORBA 4FBWA 1USHA 2QJCA 1NNWA 1HO5A 2Z06A 4KKZA 1Z2XA 1S3MA 4UWQA 4LU9A 1UTEA 3C5WC 2BCDA 3K7VC 3FGAC 3H63A 2R17A 3PSNA 4MP0A 4TUGA 2Z1AA 1S8EA 4MOYA 4UT3A 1KBPA 3THOB 3IB8A 3H64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V73 A;  1Z2W A;  3RL4 A;  3E7A A;  4FBQ A;  4F0Z A;  2WDF A;  3AV0 A;  4I5L C;  3CK2 A;  1S95 A;  4IYP C;  4IL1 A;  3RQZ A;  4Q7F A;  4M0V A;  4XPN A;  3DW8 C;  1OIE A;  3EGG A;  1II7 A;  1HP1 A;  3H61 A;  4UT3 B;  2XMO A;  4NZV A;  3QFM A;  4H2I A;  1QFC A;  3KBP A;  1S3L A;  2A22 A;  4ZVZ A;  3THN A;  5IOH A;  1UF3 A;  1FJM A;  1QHW A;  2O8G A;  2Q8U A;  2IE4 C;  3K7W C;  5JJT A;  2NPP C;  2JOG A;  3QFK A;  2YVT A;  2QFP A;  3GVE A;  1T71 A;  3P71 C;  5C1V A;  5EQV A;  2AHD A;  4V0W A;  2O8A A;  4H1S A;  4O43 A;  3T1I A;  3ZU0 A;  4WWL A;  1IT6 A;  3IVD A;  3IVE A;  4JA7 A;  4B2O A;  5JPF A;  3H60 A;  3H69 A;  2NYM C;  4DHL A;  3LL8 A;  4O24 A;  4FCX A;  5INB A;  4MOV A;  1XZW A;  4H1Y P;  5GTU A;  2BDX A;  2IAE C;  3JYF A;  3IB7 A;  3ZTV A;  3AUZ A;  5DNY A;  1OI8 A;  5JPE A;  3RL3 A;  4LTY A;  1SU1 A;  3RL5 A;  5J28 A;  4H2F A;  2Z72 A;  2IE3 C;  1G5B A;  2GJU A;  4ZX2 A;  2BQ8 X;  4O4K A;  1W24 A;  3DSC A;  1S3N A;  4I5N C;  3N5U A;  4KBP A;  4DSY A;  3E7B A;  3H66 A;  1WAO 1;  4V0X A;  4HD0 A;  2QFR A;  2KKN A;  4H2G A;  4JA9 A;  4LAC C;  1WAR A;  2NYL C;  3PSO A;  3H62 B;  4O5G A;  4G9J A;  3EGH A;  2WDE A;  5F3W A;  1HPU A;  1OID A;  4DT2 A;  3QFO A;  5B8I A;  3QG5 C;  1MF8 A;  2WDD A;  3HVQ A;  5HPE A;  4ORA A;  2WDC A;  1XM7 A;  4J6O A;  3DSD A;  4OR9 A;  4FBK A;  1M63 A;  2USH A;  2P6B A;  1TCO A;  3H68 A;  3ICF A;  2NXF A;  1S70 A;  4TUI A;  1JK7 A;  1U32 A;  1T70 A;  2CV9 A;  3C9F A;  2HYO A;  4UT2 A;  2ZBM A;  3QFN A;  2HY1 A;  3TGH A;  4ORC A;  3H67 A;  4H2B A;  4YKE A;  4V0V A;  3V4Y A;  2DFJ A;  2HYP A;  1AUI A;  4ORB A;  4FBW A;  1USH A;  2QJC A;  1NNW A;  1HO5 A;  2Z06 A;  4KKZ A;  1Z2X A;  1S3M A;  4UWQ A;  4LU9 A;  1UTE A;  3C5W C;  2BCD A;  3K7V C;  3FGA C;  3H63 A;  2R17 A;  3PSN A;  4MP0 A;  4TUG A;  2Z1A A;  1S8E A;  4MOY A;  4UT3 A;  1KBP A;  3THO B;  3IB8 A;  3H64 A; 
#chains in the Genus database with same CATH topology
 1V73 A;  1Z2W A;  3RL4 A;  2DXL A;  3E7A A;  4FBQ A;  4F0Z A;  2WDF A;  3AV0 A;  4I5L C;  3CK2 A;  1S95 A;  4IYP C;  4IL1 A;  3RQZ A;  4Q7F A;  4M0V A;  4XPN A;  3DW8 C;  1OIE A;  3EGG A;  1II7 A;  1HP1 A;  3H61 A;  4UT3 B;  2XMO A;  4NZV A;  3QFM A;  4H2I A;  1QFC A;  3KBP A;  1S3L A;  2A22 A;  4ZVZ A;  3THN A;  5IOH A;  1UF3 A;  1FJM A;  1QHW A;  2O8G A;  2Q8U A;  2IE4 C;  3K7W C;  5JJT A;  2NPP C;  2JOG A;  3QFK A;  2YVT A;  2QFP A;  3GVE A;  1T71 A;  3P71 C;  5C1V A;  5EQV A;  2AHD A;  4V0W A;  2O8A A;  4H1S A;  4O43 A;  3T1I A;  3ZU0 A;  4WWL A;  1IT6 A;  3IVD A;  3IVE A;  4JA7 A;  4B2O A;  5JPF A;  3H60 A;  2ZO9 B;  2NYM C;  3H69 A;  4DHL A;  3LL8 A;  4O24 A;  4FCX A;  5INB A;  4MOV A;  1XZW A;  4H1Y P;  5GTU A;  2YEQ A;  2BDX A;  2IAE C;  3JYF A;  3IB7 A;  3ZTV A;  3AUZ A;  5DNY A;  1OI8 A;  5JPE A;  3RL3 A;  4LTY A;  1SU1 A;  3FLO A;  3RL5 A;  5J28 A;  4H2F A;  2Z72 A;  2IE3 C;  1G5B A;  2GJU A;  4ZX2 A;  2BQ8 X;  4O4K A;  1W24 A;  3D03 A;  3DSC A;  1S3N A;  4I5N C;  3N5U A;  4KBP A;  4DSY A;  3E7B A;  3H66 A;  1WAO 1;  4V0X A;  4HD0 A;  2QFR A;  2KKN A;  4H2G A;  4JA9 A;  4LAC C;  1WAR A;  2NYL C;  3PSO A;  3H62 B;  4O5G A;  4G9J A;  3EGH A;  2WDE A;  5F3W A;  1HPU A;  1OID A;  4DT2 A;  3QFO A;  5B8I A;  3QG5 C;  1MF8 A;  2WDD A;  3HVQ A;  5HPE A;  4ORA A;  2WDC A;  1XM7 A;  4J6O A;  3DSD A;  4OR9 A;  4FBK A;  1M63 A;  2USH A;  2ZOA A;  2P6B A;  1TCO A;  3H68 A;  3ICF A;  2NXF A;  1S70 A;  4TUI A;  1JK7 A;  1U32 A;  1T70 A;  3E0J A;  2CV9 A;  3C9F A;  2HYO A;  2DXN A;  4UT2 A;  2ZBM A;  3QFN A;  2HY1 A;  3TGH A;  4ORC A;  3H67 A;  4H2B A;  4YKE A;  4V0V A;  3V4Y A;  2DFJ A;  2HYP A;  1AUI A;  4ORB A;  4FBW A;  1USH A;  2QJC A;  1NNW A;  1HO5 A;  2Z06 A;  4KKZ A;  1Z2X A;  1S3M A;  4UWQ A;  4LU9 A;  1UTE A;  3C5W C;  2BCD A;  3K7V C;  3FGA C;  3H63 A;  2R17 A;  3PSN A;  4MP0 A;  4TUG A;  2Z1A A;  1S8E A;  4MOY A;  4UT3 A;  1KBP A;  3THO B;  3IB8 A;  3H64 A; 
#chains in the Genus database with same CATH homology
 1V73 A;  1Z2W A;  3RL4 A;  2DXL A;  3E7A A;  4FBQ A;  4F0Z A;  2WDF A;  3AV0 A;  4I5L C;  3CK2 A;  1S95 A;  4IYP C;  4IL1 A;  3RQZ A;  4Q7F A;  4M0V A;  4XPN A;  3DW8 C;  1OIE A;  3EGG A;  1II7 A;  1HP1 A;  3H61 A;  4UT3 B;  2XMO A;  4NZV A;  3QFM A;  4H2I A;  1QFC A;  3KBP A;  1S3L A;  2A22 A;  4ZVZ A;  3THN A;  5IOH A;  1UF3 A;  1FJM A;  1QHW A;  2O8G A;  2Q8U A;  2IE4 C;  3K7W C;  5JJT A;  2NPP C;  2JOG A;  3QFK A;  2YVT A;  2QFP A;  3GVE A;  1T71 A;  3P71 C;  5C1V A;  5EQV A;  2AHD A;  4V0W A;  2O8A A;  4H1S A;  4O43 A;  3T1I A;  3ZU0 A;  4WWL A;  1IT6 A;  3IVD A;  3IVE A;  4JA7 A;  4B2O A;  5JPF A;  3H60 A;  2ZO9 B;  2NYM C;  3H69 A;  4DHL A;  3LL8 A;  4O24 A;  4FCX A;  5INB A;  4MOV A;  1XZW A;  4H1Y P;  5GTU A;  2YEQ A;  2BDX A;  2IAE C;  3JYF A;  3IB7 A;  3ZTV A;  3AUZ A;  5DNY A;  1OI8 A;  5JPE A;  3RL3 A;  4LTY A;  1SU1 A;  3FLO A;  3RL5 A;  5J28 A;  4H2F A;  2Z72 A;  2IE3 C;  1G5B A;  2GJU A;  4ZX2 A;  2BQ8 X;  4O4K A;  1W24 A;  3D03 A;  3DSC A;  1S3N A;  4I5N C;  3N5U A;  4KBP A;  4DSY A;  3E7B A;  3H66 A;  1WAO 1;  4V0X A;  4HD0 A;  2QFR A;  2KKN A;  4H2G A;  4JA9 A;  4LAC C;  1WAR A;  2NYL C;  3PSO A;  3H62 B;  4O5G A;  4G9J A;  3EGH A;  2WDE A;  5F3W A;  1HPU A;  1OID A;  4DT2 A;  3QFO A;  5B8I A;  3QG5 C;  1MF8 A;  2WDD A;  3HVQ A;  5HPE A;  4ORA A;  2WDC A;  1XM7 A;  4J6O A;  3DSD A;  4OR9 A;  4FBK A;  1M63 A;  2USH A;  2ZOA A;  2P6B A;  1TCO A;  3H68 A;  3ICF A;  2NXF A;  1S70 A;  4TUI A;  1JK7 A;  1U32 A;  1T70 A;  3E0J A;  2CV9 A;  3C9F A;  2HYO A;  2DXN A;  4UT2 A;  2ZBM A;  3QFN A;  2HY1 A;  3TGH A;  4ORC A;  3H67 A;  4H2B A;  4YKE A;  4V0V A;  3V4Y A;  2DFJ A;  2HYP A;  1AUI A;  4ORB A;  4FBW A;  1USH A;  2QJC A;  1NNW A;  1HO5 A;  2Z06 A;  4KKZ A;  1Z2X A;  1S3M A;  4UWQ A;  4LU9 A;  1UTE A;  3C5W C;  2BCD A;  3K7V C;  3FGA C;  3H63 A;  2R17 A;  3PSN A;  4MP0 A;  4TUG A;  2Z1A A;  1S8E A;  4MOY A;  4UT3 A;  1KBP A;  3THO B;  3IB8 A;  3H64 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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