3PSOA

Crystal structure of mouse vps29 complexed with zn2+
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Vacuolar protein sorting-associated protein 29
publication title Conformational dynamics and biomolecular interactions of VPS29 studied by NMR and X-ray crystallography
rcsb
source organism Mus musculus
total genus 40
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3psoA00
1U32A 2QFRA 3PSOA 5F3WA 4H2FA 2QJCA 3THOB 4ZX2A 1S3LA 3K7VC 4JA9A 4ORCA 2NYMC 2WDDA 4I5LC 5DNYA 5GTUA 2NYLC 2HYPA 1USHA 2HYOA 4YKEA 1TCOA 2IAEC 3IVDA 2WDFA 1AUIA 3HVQA 4KBPA 4ORAA 2USHA 5HPEA 1HPUA 1S70A 5IOHA 1M63A 3H68A 4MOYA 4WWLA 5JPFA 3EGGA 1V73A 5JPEA 5J28A 4IL1A 3RL4A 2IE4C 2GJUA 3QFKA 2HY1A 2DFJA 3CK2A 3JYFA 3E7BA 1OIEA 1SU1A 2BQ8X 4O4KA 3LL8A 4DHLA 2KKNA 1II7A 2NXFA 4F0ZA 3C9FA 3AUZA 3H66A 2BDXA 3FGAC 1S3NA 2XMOA 3H67A 3H62B 3QFMA 4UT3A 1MF8A 4I5NC 5INBA 1T71A 1OIDA 3AV0A 4FBKA 4LACC 4V0WA 3KBPA 3DSCA 2WDCA 3H60A 2WDEA 3DW8C 3E7AA 1G5BA 1NNWA 4TUIA 3DSDA 3ZU0A 3THNA 1XZWA 2QFPA 4B2OA 4DT2A 2R17A 3PSNA 4O5GA 4H2BA 4OR9A 5JJTA 1WARA 1Z2WA 3H63A 3RL3A 3C5WC 3QFOA 1HP1A 4M0VA 4O43A 1UTEA 3ZTVA 4HD0A 2P6BA 2BCDA 1JK7A 3IB7A 4J6OA 4H2IA 1QFCA 3V4YA 2NPPC 3H64A 3RQZA 5B8IA 1W24A 3GVEA 4KKZA 2Z1AA 1UF3A 2JOGA 2YVTA 3EGHA 1XM7A 3IVEA 4MOVA 5EQVA 3K7WC 4H1SA 1KBPA 4FBWA 1WAO1 3N5UA 5C1VA 2O8AA 4G9JA 4H1YP 4V0VA 4LTYA 3TGHA 4JA7A 1HO5A 4H2GA 2Z06A 3T1IA 1T70A 2Q8UA 4NZVA 3H61A 3QG5C 4IYPC 4MP0A 4UT2A 4TUGA 3QFNA 4UT3B 1S3MA 2CV9A 1OI8A 4XPNA 4ORBA 3IB8A 3RL5A 2Z72A 4ZVZA 3H69A 2AHDA 4O24A 4FCXA 1FJMA 3P71C 2ZBMA 4Q7FA 1Z2XA 1S8EA 2O8GA 1S95A 2A22A 1IT6A 4DSYA 4FBQA 3ICFA 4LU9A 4UWQA 4V0XA 1QHWA 2IE3C
chains in the Genus database with same CATH superfamily
1U32A 2QFRA 3PSOA 5F3WA 4H2FA 2QJCA 3THOB 4ZX2A 1S3LA 3K7VC 4JA9A 4ORCA 2NYMC 2WDDA 3FLOA 4I5LC 5GTUA 5DNYA 2NYLC 2HYPA 1USHA 2HYOA 4YKEA 1TCOA 2IAEC 3IVDA 2WDFA 1AUIA 3HVQA 4KBPA 4ORAA 2USHA 5HPEA 2ZO9B 1HPUA 1S70A 5IOHA 1M63A 3H68A 4MOYA 4WWLA 5JPFA 3EGGA 3E0JA 1V73A 5JPEA 5J28A 4IL1A 3RL4A 2IE4C 2GJUA 3QFKA 2HY1A 2DXLA 2DFJA 3CK2A 3JYFA 3E7BA 1OIEA 1SU1A 2BQ8X 4O4KA 3LL8A 4DHLA 2KKNA 1II7A 2NXFA 4F0ZA 3C9FA 3AUZA 3H66A 2BDXA 3FGAC 1S3NA 2XMOA 3H67A 3H62B 3QFMA 4UT3A 1MF8A 4I5NC 5INBA 1T71A 1OIDA 3AV0A 4FBKA 4LACC 4V0WA 3KBPA 3DSCA 2WDCA 3H60A 2WDEA 3DW8C 3E7AA 1G5BA 1NNWA 4TUIA 3DSDA 3ZU0A 3THNA 1XZWA 2QFPA 4B2OA 4DT2A 2R17A 3PSNA 2YEQA 4O5GA 4H2BA 4OR9A 5JJTA 1WARA 2DXNA 1Z2WA 3H63A 3RL3A 3C5WC 3QFOA 1HP1A 4M0VA 4O43A 1UTEA 3ZTVA 3D03A 4HD0A 2P6BA 2BCDA 1JK7A 3IB7A 4J6OA 4H2IA 1QFCA 3V4YA 2NPPC 3H64A 3RQZA 5B8IA 1W24A 3GVEA 4KKZA 2Z1AA 1UF3A 2JOGA 2YVTA 3EGHA 1XM7A 3IVEA 2ZOAA 4MOVA 5EQVA 3K7WC 4H1SA 1KBPA 4FBWA 1WAO1 3N5UA 5C1VA 2O8AA 4G9JA 4H1YP 4V0VA 4LTYA 3TGHA 4JA7A 1HO5A 4H2GA 2Z06A 3T1IA 1T70A 2Q8UA 4NZVA 3H61A 3QG5C 4IYPC 4MP0A 4UT2A 4TUGA 3QFNA 4UT3B 1S3MA 2CV9A 1OI8A 4XPNA 4ORBA 3IB8A 3RL5A 2Z72A 4ZVZA 3H69A 2AHDA 4O24A 4FCXA 1FJMA 3P71C 2ZBMA 4Q7FA 1Z2XA 1S8EA 2O8GA 1S95A 2A22A 1IT6A 4DSYA 4FBQA 3ICFA 4LU9A 4UWQA 4V0XA 1QHWA 2IE3C
chains in the Genus database with same CATH topology
1U32A 2QFRA 3PSOA 5F3WA 4H2FA 2QJCA 3THOB 4ZX2A 1S3LA 3K7VC 4JA9A 4ORCA 2NYMC 2WDDA 3FLOA 4I5LC 5GTUA 5DNYA 2NYLC 2HYPA 1USHA 2HYOA 4YKEA 1TCOA 2IAEC 3IVDA 2WDFA 1AUIA 3HVQA 4KBPA 4ORAA 2USHA 5HPEA 2ZO9B 1HPUA 1S70A 5IOHA 1M63A 3H68A 4MOYA 4WWLA 5JPFA 3EGGA 3E0JA 1V73A 5JPEA 5J28A 4IL1A 3RL4A 2IE4C 2GJUA 3QFKA 2HY1A 2DXLA 2DFJA 3CK2A 3JYFA 3E7BA 1OIEA 1SU1A 2BQ8X 4O4KA 3LL8A 4DHLA 2KKNA 1II7A 2NXFA 4F0ZA 3C9FA 3AUZA 3H66A 2BDXA 3FGAC 1S3NA 2XMOA 3H67A 3H62B 3QFMA 4UT3A 1MF8A 4I5NC 5INBA 1T71A 1OIDA 3AV0A 4FBKA 4LACC 4V0WA 3KBPA 3DSCA 2WDCA 3H60A 2WDEA 3DW8C 3E7AA 1G5BA 1NNWA 4TUIA 3DSDA 3ZU0A 3THNA 1XZWA 2QFPA 4B2OA 4DT2A 2R17A 3PSNA 2YEQA 4O5GA 4H2BA 4OR9A 5JJTA 1WARA 2DXNA 1Z2WA 3H63A 3RL3A 3C5WC 3QFOA 1HP1A 4M0VA 4O43A 1UTEA 3ZTVA 3D03A 4HD0A 2P6BA 2BCDA 1JK7A 3IB7A 4J6OA 4H2IA 1QFCA 3V4YA 2NPPC 3H64A 3RQZA 5B8IA 1W24A 3GVEA 4KKZA 2Z1AA 1UF3A 2JOGA 2YVTA 3EGHA 1XM7A 3IVEA 2ZOAA 4MOVA 5EQVA 3K7WC 4H1SA 1KBPA 4FBWA 1WAO1 3N5UA 5C1VA 2O8AA 4G9JA 4H1YP 4V0VA 4LTYA 3TGHA 4JA7A 1HO5A 4H2GA 2Z06A 3T1IA 1T70A 2Q8UA 4NZVA 3H61A 3QG5C 4IYPC 4MP0A 4UT2A 4TUGA 3QFNA 4UT3B 1S3MA 2CV9A 1OI8A 4XPNA 4ORBA 3IB8A 3RL5A 2Z72A 4ZVZA 3H69A 2AHDA 4O24A 4FCXA 1FJMA 3P71C 2ZBMA 4Q7FA 1Z2XA 1S8EA 2O8GA 1S95A 2A22A 1IT6A 4DSYA 4FBQA 3ICFA 4LU9A 4UWQA 4V0XA 1QHWA 2IE3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U32 A;  2QFR A;  3PSO A;  5F3W A;  4H2F A;  2QJC A;  3THO B;  4ZX2 A;  1S3L A;  3K7V C;  4JA9 A;  4ORC A;  2NYM C;  2WDD A;  4I5L C;  5DNY A;  5GTU A;  2NYL C;  2HYP A;  1USH A;  2HYO A;  4YKE A;  1TCO A;  2IAE C;  3IVD A;  2WDF A;  1AUI A;  3HVQ A;  4KBP A;  4ORA A;  2USH A;  5HPE A;  1HPU A;  1S70 A;  5IOH A;  1M63 A;  3H68 A;  4MOY A;  4WWL A;  5JPF A;  3EGG A;  1V73 A;  5JPE A;  5J28 A;  4IL1 A;  3RL4 A;  2IE4 C;  2GJU A;  3QFK A;  2HY1 A;  2DFJ A;  3CK2 A;  3JYF A;  3E7B A;  1OIE A;  1SU1 A;  2BQ8 X;  4O4K A;  3LL8 A;  4DHL A;  2KKN A;  1II7 A;  2NXF A;  4F0Z A;  3C9F A;  3AUZ A;  3H66 A;  2BDX A;  3FGA C;  1S3N A;  2XMO A;  3H67 A;  3H62 B;  3QFM A;  4UT3 A;  1MF8 A;  4I5N C;  5INB A;  1T71 A;  1OID A;  3AV0 A;  4FBK A;  4LAC C;  4V0W A;  3KBP A;  3DSC A;  2WDC A;  3H60 A;  2WDE A;  3DW8 C;  3E7A A;  1G5B A;  1NNW A;  4TUI A;  3DSD A;  3ZU0 A;  3THN A;  1XZW A;  2QFP A;  4B2O A;  4DT2 A;  2R17 A;  3PSN A;  4O5G A;  4H2B A;  4OR9 A;  5JJT A;  1WAR A;  1Z2W A;  3H63 A;  3RL3 A;  3C5W C;  3QFO A;  1HP1 A;  4M0V A;  4O43 A;  1UTE A;  3ZTV A;  4HD0 A;  2P6B A;  2BCD A;  1JK7 A;  3IB7 A;  4J6O A;  4H2I A;  1QFC A;  3V4Y A;  2NPP C;  3H64 A;  3RQZ A;  5B8I A;  1W24 A;  3GVE A;  4KKZ A;  2Z1A A;  1UF3 A;  2JOG A;  2YVT A;  3EGH A;  1XM7 A;  3IVE A;  4MOV A;  5EQV A;  3K7W C;  4H1S A;  1KBP A;  4FBW A;  1WAO 1;  3N5U A;  5C1V A;  2O8A A;  4G9J A;  4H1Y P;  4V0V A;  4LTY A;  3TGH A;  4JA7 A;  1HO5 A;  4H2G A;  2Z06 A;  3T1I A;  1T70 A;  2Q8U A;  4NZV A;  3H61 A;  3QG5 C;  4IYP C;  4MP0 A;  4UT2 A;  4TUG A;  3QFN A;  4UT3 B;  1S3M A;  2CV9 A;  1OI8 A;  4XPN A;  4ORB A;  3IB8 A;  3RL5 A;  2Z72 A;  4ZVZ A;  3H69 A;  2AHD A;  4O24 A;  4FCX A;  1FJM A;  3P71 C;  2ZBM A;  4Q7F A;  1Z2X A;  1S8E A;  2O8G A;  1S95 A;  2A22 A;  1IT6 A;  4DSY A;  4FBQ A;  3ICF A;  4LU9 A;  4UWQ A;  4V0X A;  1QHW A;  2IE3 C; 
#chains in the Genus database with same CATH topology
 1U32 A;  2QFR A;  3PSO A;  5F3W A;  4H2F A;  2QJC A;  3THO B;  4ZX2 A;  1S3L A;  3K7V C;  4JA9 A;  4ORC A;  2NYM C;  2WDD A;  3FLO A;  4I5L C;  5GTU A;  5DNY A;  2NYL C;  2HYP A;  1USH A;  2HYO A;  4YKE A;  1TCO A;  2IAE C;  3IVD A;  2WDF A;  1AUI A;  3HVQ A;  4KBP A;  4ORA A;  2USH A;  5HPE A;  2ZO9 B;  1HPU A;  1S70 A;  5IOH A;  1M63 A;  3H68 A;  4MOY A;  4WWL A;  5JPF A;  3EGG A;  3E0J A;  1V73 A;  5JPE A;  5J28 A;  4IL1 A;  3RL4 A;  2IE4 C;  2GJU A;  3QFK A;  2HY1 A;  2DXL A;  2DFJ A;  3CK2 A;  3JYF A;  3E7B A;  1OIE A;  1SU1 A;  2BQ8 X;  4O4K A;  3LL8 A;  4DHL A;  2KKN A;  1II7 A;  2NXF A;  4F0Z A;  3C9F A;  3AUZ A;  3H66 A;  2BDX A;  3FGA C;  1S3N A;  2XMO A;  3H67 A;  3H62 B;  3QFM A;  4UT3 A;  1MF8 A;  4I5N C;  5INB A;  1T71 A;  1OID A;  3AV0 A;  4FBK A;  4LAC C;  4V0W A;  3KBP A;  3DSC A;  2WDC A;  3H60 A;  2WDE A;  3DW8 C;  3E7A A;  1G5B A;  1NNW A;  4TUI A;  3DSD A;  3ZU0 A;  3THN A;  1XZW A;  2QFP A;  4B2O A;  4DT2 A;  2R17 A;  3PSN A;  2YEQ A;  4O5G A;  4H2B A;  4OR9 A;  5JJT A;  1WAR A;  2DXN A;  1Z2W A;  3H63 A;  3RL3 A;  3C5W C;  3QFO A;  1HP1 A;  4M0V A;  4O43 A;  1UTE A;  3ZTV A;  3D03 A;  4HD0 A;  2P6B A;  2BCD A;  1JK7 A;  3IB7 A;  4J6O A;  4H2I A;  1QFC A;  3V4Y A;  2NPP C;  3H64 A;  3RQZ A;  5B8I A;  1W24 A;  3GVE A;  4KKZ A;  2Z1A A;  1UF3 A;  2JOG A;  2YVT A;  3EGH A;  1XM7 A;  3IVE A;  2ZOA A;  4MOV A;  5EQV A;  3K7W C;  4H1S A;  1KBP A;  4FBW A;  1WAO 1;  3N5U A;  5C1V A;  2O8A A;  4G9J A;  4H1Y P;  4V0V A;  4LTY A;  3TGH A;  4JA7 A;  1HO5 A;  4H2G A;  2Z06 A;  3T1I A;  1T70 A;  2Q8U A;  4NZV A;  3H61 A;  3QG5 C;  4IYP C;  4MP0 A;  4UT2 A;  4TUG A;  3QFN A;  4UT3 B;  1S3M A;  2CV9 A;  1OI8 A;  4XPN A;  4ORB A;  3IB8 A;  3RL5 A;  2Z72 A;  4ZVZ A;  3H69 A;  2AHD A;  4O24 A;  4FCX A;  1FJM A;  3P71 C;  2ZBM A;  4Q7F A;  1Z2X A;  1S8E A;  2O8G A;  1S95 A;  2A22 A;  1IT6 A;  4DSY A;  4FBQ A;  3ICF A;  4LU9 A;  4UWQ A;  4V0X A;  1QHW A;  2IE3 C; 
#chains in the Genus database with same CATH homology
 1U32 A;  2QFR A;  3PSO A;  5F3W A;  4H2F A;  2QJC A;  3THO B;  4ZX2 A;  1S3L A;  3K7V C;  4JA9 A;  4ORC A;  2NYM C;  2WDD A;  3FLO A;  4I5L C;  5GTU A;  5DNY A;  2NYL C;  2HYP A;  1USH A;  2HYO A;  4YKE A;  1TCO A;  2IAE C;  3IVD A;  2WDF A;  1AUI A;  3HVQ A;  4KBP A;  4ORA A;  2USH A;  5HPE A;  2ZO9 B;  1HPU A;  1S70 A;  5IOH A;  1M63 A;  3H68 A;  4MOY A;  4WWL A;  5JPF A;  3EGG A;  3E0J A;  1V73 A;  5JPE A;  5J28 A;  4IL1 A;  3RL4 A;  2IE4 C;  2GJU A;  3QFK A;  2HY1 A;  2DXL A;  2DFJ A;  3CK2 A;  3JYF A;  3E7B A;  1OIE A;  1SU1 A;  2BQ8 X;  4O4K A;  3LL8 A;  4DHL A;  2KKN A;  1II7 A;  2NXF A;  4F0Z A;  3C9F A;  3AUZ A;  3H66 A;  2BDX A;  3FGA C;  1S3N A;  2XMO A;  3H67 A;  3H62 B;  3QFM A;  4UT3 A;  1MF8 A;  4I5N C;  5INB A;  1T71 A;  1OID A;  3AV0 A;  4FBK A;  4LAC C;  4V0W A;  3KBP A;  3DSC A;  2WDC A;  3H60 A;  2WDE A;  3DW8 C;  3E7A A;  1G5B A;  1NNW A;  4TUI A;  3DSD A;  3ZU0 A;  3THN A;  1XZW A;  2QFP A;  4B2O A;  4DT2 A;  2R17 A;  3PSN A;  2YEQ A;  4O5G A;  4H2B A;  4OR9 A;  5JJT A;  1WAR A;  2DXN A;  1Z2W A;  3H63 A;  3RL3 A;  3C5W C;  3QFO A;  1HP1 A;  4M0V A;  4O43 A;  1UTE A;  3ZTV A;  3D03 A;  4HD0 A;  2P6B A;  2BCD A;  1JK7 A;  3IB7 A;  4J6O A;  4H2I A;  1QFC A;  3V4Y A;  2NPP C;  3H64 A;  3RQZ A;  5B8I A;  1W24 A;  3GVE A;  4KKZ A;  2Z1A A;  1UF3 A;  2JOG A;  2YVT A;  3EGH A;  1XM7 A;  3IVE A;  2ZOA A;  4MOV A;  5EQV A;  3K7W C;  4H1S A;  1KBP A;  4FBW A;  1WAO 1;  3N5U A;  5C1V A;  2O8A A;  4G9J A;  4H1Y P;  4V0V A;  4LTY A;  3TGH A;  4JA7 A;  1HO5 A;  4H2G A;  2Z06 A;  3T1I A;  1T70 A;  2Q8U A;  4NZV A;  3H61 A;  3QG5 C;  4IYP C;  4MP0 A;  4UT2 A;  4TUG A;  3QFN A;  4UT3 B;  1S3M A;  2CV9 A;  1OI8 A;  4XPN A;  4ORB A;  3IB8 A;  3RL5 A;  2Z72 A;  4ZVZ A;  3H69 A;  2AHD A;  4O24 A;  4FCX A;  1FJM A;  3P71 C;  2ZBM A;  4Q7F A;  1Z2X A;  1S8E A;  2O8G A;  1S95 A;  2A22 A;  1IT6 A;  4DSY A;  4FBQ A;  3ICF A;  4LU9 A;  4UWQ A;  4V0X A;  1QHW A;  2IE3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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