3PSOA

Crystal structure of mouse vps29 complexed with zn2+
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
182
structure length
182
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Vacuolar protein sorting-associated protein 29
publication title Conformational dynamics and biomolecular interactions of VPS29 studied by NMR and X-ray crystallography
rcsb
source organism Mus musculus
molecule tags Hydrolase
total genus 40
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3psoA00
2HYPA 3QG5C 1OIDA 1IT6A 5C1VA 1XM7A 5JPEA 1W24A 4O43A 4UT2A 3H60A 4IL1A 4G9JA 1HP1A 4F0ZA 4ZX2A 4H1SA 4UT3A 2HYOA 2WDCA 3H69A 4I5LC 4LU9A 3THNA 1NNWA 2CV9A 2NXFA 4M0VA 3IB8A 4JA7A 3FGAC 3H66A 3T1IA 4FBKA 3LL8A 2IE3C 3E7AA 4B2OA 5F3WA 4ZVZA 2A22A 3QFOA 4LACC 4O5GA 4H2BA 1MF8A 3RL3A 1S3NA 3N5UA 4V0WA 1HPUA 4XPNA 2Z72A 2BDXA 5INBA 1M63A 2YVTA 1UTEA 1S8EA 3HVQA 2USHA 1WAO1 1OIEA 4ORAA 1HO5A 4YKEA 1G5BA 1TCOA 2Q8UA 4MP0A 2QJCA 3DSDA 5EQVA 2Z06A 4UT3B 1S70A 4V0XA 3JYFA 3QFKA 3QFMA 5GTUA 1XZWA 2IAEC 4FBWA 3E7BA 3H63A 4TUIA 1V73A 4NZVA 5HPEA 1II7A 3QFNA 2NPPC 4KKZA 3H62B 4ORBA 2GJUA 2WDEA 3AUZA 3TGHA 3H61A 1T71A 4O4KA 4H2IA 3CK2A 2Z1AA 3IVDA 4OR9A 4MOYA 2HY1A 2IE4C 3H64A 3AV0A 4O24A 2R17A 1FJMA 3P71C 1T70A 4H2FA 4ORCA 1UF3A 1WARA 4UWQA 2NYMC 1S95A 4IYPC 3RL5A 3C9FA 3PSNA 2WDFA 3V4YA 2WDDA 4MOVA 2KKNA 5JJTA 3RQZA 1KBPA 4HD0A 1QFCA 1QHWA 2JOGA 3H67A 1SU1A 2QFRA 4DSYA 2QFPA 2NYLC 2O8AA 1S3MA 5DNYA 5J28A 4H2GA 1Z2WA 3IVEA 4TUGA 3GVEA 3THOB 5B8IA 1JK7A 1S3LA 3DSCA 2ZBMA 3PSOA 5IOHA 4Q7FA 2O8GA 4DHLA 2BCDA 3EGGA 3KBPA 4LTYA 4V0VA 3EGHA 3DW8C 1AUIA 2AHDA 1U32A 4FBQA 2DFJA 3ICFA 3H68A 1Z2XA 4I5NC 4KBPA 4FCXA 1USHA 4H1YP 4JA9A 1OI8A 3C5WC 4J6OA 4WWLA 5JPFA 3ZTVA 3K7VC 3IB7A 3RL4A 3K7WC 4DT2A 2BQ8X 3ZU0A 2XMOA 2P6BA
chains in the Genus database with same CATH superfamily
2HYPA 3QG5C 1OIDA 1IT6A 5C1VA 1XM7A 5JPEA 1W24A 4O43A 4UT2A 3H60A 4IL1A 4G9JA 1HP1A 4F0ZA 4ZX2A 4H1SA 4UT3A 2HYOA 2WDCA 3H69A 4I5LC 4LU9A 3THNA 1NNWA 2CV9A 2NXFA 4M0VA 3IB8A 4JA7A 3FGAC 3H66A 3T1IA 4FBKA 3LL8A 2IE3C 3E7AA 4B2OA 5F3WA 4ZVZA 2A22A 3QFOA 4LACC 4O5GA 4H2BA 1MF8A 3RL3A 1S3NA 3N5UA 4V0WA 1HPUA 4XPNA 2Z72A 2BDXA 5INBA 1M63A 2YVTA 1UTEA 1S8EA 3HVQA 2USHA 1WAO1 1OIEA 4ORAA 1HO5A 3FLOA 4YKEA 1G5BA 1TCOA 2Q8UA 4MP0A 2QJCA 3DSDA 5EQVA 2Z06A 4UT3B 1S70A 4V0XA 3JYFA 3QFKA 3QFMA 5GTUA 1XZWA 2IAEC 2YEQA 3D03A 3E7BA 3H63A 1V73A 4FBWA 4TUIA 4NZVA 5HPEA 1II7A 3QFNA 2NPPC 4KKZA 3H62B 4ORBA 2GJUA 2WDEA 3AUZA 3TGHA 3H61A 1T71A 4O4KA 4H2IA 3CK2A 2Z1AA 3IVDA 4OR9A 4MOYA 2HY1A 2IE4C 3H64A 3AV0A 4O24A 2R17A 1FJMA 3P71C 1T70A 2ZO9B 4H2FA 4ORCA 1UF3A 1WARA 4UWQA 2NYMC 1S95A 4IYPC 3RL5A 3C9FA 3PSNA 2WDFA 3V4YA 2WDDA 4MOVA 2KKNA 3E0JA 3RQZA 5JJTA 1KBPA 4HD0A 1QFCA 1QHWA 2JOGA 3H67A 1SU1A 2QFRA 4DSYA 2QFPA 2NYLC 2O8AA 1S3MA 5DNYA 5J28A 4H2GA 1Z2WA 3IVEA 4TUGA 3GVEA 3THOB 5B8IA 1JK7A 1S3LA 2ZOAA 3DSCA 2ZBMA 3PSOA 5IOHA 4Q7FA 2O8GA 4DHLA 2BCDA 3EGGA 3KBPA 4LTYA 4V0VA 3EGHA 3DW8C 1AUIA 2AHDA 1U32A 4FBQA 2DFJA 3ICFA 3H68A 1Z2XA 2DXNA 4I5NC 4FCXA 4KBPA 1USHA 4H1YP 4JA9A 1OI8A 3C5WC 4J6OA 4WWLA 5JPFA 3ZTVA 3K7VC 3IB7A 3RL4A 3K7WC 4DT2A 2BQ8X 3ZU0A 2DXLA 2XMOA 2P6BA
chains in the Genus database with same CATH topology
2HYPA 3QG5C 1OIDA 1IT6A 5C1VA 1XM7A 5JPEA 1W24A 4O43A 4UT2A 3H60A 4IL1A 4G9JA 1HP1A 4F0ZA 4ZX2A 4H1SA 4UT3A 2HYOA 2WDCA 3H69A 4I5LC 4LU9A 3THNA 1NNWA 2CV9A 2NXFA 4M0VA 3IB8A 4JA7A 3FGAC 3H66A 3T1IA 4FBKA 3LL8A 2IE3C 3E7AA 4B2OA 5F3WA 4ZVZA 2A22A 3QFOA 4LACC 4O5GA 4H2BA 1MF8A 3RL3A 1S3NA 3N5UA 4V0WA 1HPUA 4XPNA 2Z72A 2BDXA 5INBA 1M63A 2YVTA 1UTEA 1S8EA 3HVQA 2USHA 1WAO1 1OIEA 4ORAA 1HO5A 3FLOA 4YKEA 1G5BA 1TCOA 2Q8UA 4MP0A 2QJCA 3DSDA 5EQVA 2Z06A 4UT3B 1S70A 4V0XA 3JYFA 3QFKA 3QFMA 5GTUA 1XZWA 2IAEC 2YEQA 3D03A 3E7BA 3H63A 1V73A 4FBWA 4TUIA 4NZVA 5HPEA 1II7A 3QFNA 2NPPC 4KKZA 3H62B 4ORBA 2GJUA 2WDEA 3AUZA 3TGHA 3H61A 1T71A 4O4KA 4H2IA 3CK2A 2Z1AA 3IVDA 4OR9A 4MOYA 2HY1A 2IE4C 3H64A 3AV0A 4O24A 2R17A 1FJMA 3P71C 1T70A 2ZO9B 4H2FA 4ORCA 1UF3A 1WARA 4UWQA 2NYMC 1S95A 4IYPC 3RL5A 3C9FA 3PSNA 2WDFA 3V4YA 2WDDA 4MOVA 2KKNA 3E0JA 3RQZA 5JJTA 1KBPA 4HD0A 1QFCA 1QHWA 2JOGA 3H67A 1SU1A 2QFRA 4DSYA 2QFPA 2NYLC 2O8AA 1S3MA 5DNYA 5J28A 4H2GA 1Z2WA 3IVEA 4TUGA 3GVEA 3THOB 5B8IA 1JK7A 1S3LA 2ZOAA 3DSCA 2ZBMA 3PSOA 5IOHA 4Q7FA 2O8GA 4DHLA 2BCDA 3EGGA 3KBPA 4LTYA 4V0VA 3EGHA 3DW8C 1AUIA 2AHDA 1U32A 4FBQA 2DFJA 3ICFA 3H68A 1Z2XA 2DXNA 4I5NC 4FCXA 4KBPA 1USHA 4H1YP 4JA9A 1OI8A 3C5WC 4J6OA 4WWLA 5JPFA 3ZTVA 3K7VC 3IB7A 3RL4A 3K7WC 4DT2A 2BQ8X 3ZU0A 2DXLA 2XMOA 2P6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HYP A;  3QG5 C;  1OID A;  1IT6 A;  5C1V A;  1XM7 A;  5JPE A;  1W24 A;  4O43 A;  4UT2 A;  3H60 A;  4IL1 A;  4G9J A;  1HP1 A;  4F0Z A;  4ZX2 A;  4H1S A;  4UT3 A;  2HYO A;  2WDC A;  3H69 A;  4I5L C;  4LU9 A;  3THN A;  1NNW A;  2CV9 A;  2NXF A;  4M0V A;  3IB8 A;  4JA7 A;  3FGA C;  3H66 A;  3T1I A;  4FBK A;  3LL8 A;  2IE3 C;  3E7A A;  4B2O A;  5F3W A;  4ZVZ A;  2A22 A;  3QFO A;  4LAC C;  4O5G A;  4H2B A;  1MF8 A;  3RL3 A;  1S3N A;  3N5U A;  4V0W A;  1HPU A;  4XPN A;  2Z72 A;  2BDX A;  5INB A;  1M63 A;  2YVT A;  1UTE A;  1S8E A;  3HVQ A;  2USH A;  1WAO 1;  1OIE A;  4ORA A;  1HO5 A;  4YKE A;  1G5B A;  1TCO A;  2Q8U A;  4MP0 A;  2QJC A;  3DSD A;  5EQV A;  2Z06 A;  4UT3 B;  1S70 A;  4V0X A;  3JYF A;  3QFK A;  3QFM A;  5GTU A;  1XZW A;  2IAE C;  4FBW A;  3E7B A;  3H63 A;  4TUI A;  1V73 A;  4NZV A;  5HPE A;  1II7 A;  3QFN A;  2NPP C;  4KKZ A;  3H62 B;  4ORB A;  2GJU A;  2WDE A;  3AUZ A;  3TGH A;  3H61 A;  1T71 A;  4O4K A;  4H2I A;  3CK2 A;  2Z1A A;  3IVD A;  4OR9 A;  4MOY A;  2HY1 A;  2IE4 C;  3H64 A;  3AV0 A;  4O24 A;  2R17 A;  1FJM A;  3P71 C;  1T70 A;  4H2F A;  4ORC A;  1UF3 A;  1WAR A;  4UWQ A;  2NYM C;  1S95 A;  4IYP C;  3RL5 A;  3C9F A;  3PSN A;  2WDF A;  3V4Y A;  2WDD A;  4MOV A;  2KKN A;  5JJT A;  3RQZ A;  1KBP A;  4HD0 A;  1QFC A;  1QHW A;  2JOG A;  3H67 A;  1SU1 A;  2QFR A;  4DSY A;  2QFP A;  2NYL C;  2O8A A;  1S3M A;  5DNY A;  5J28 A;  4H2G A;  1Z2W A;  3IVE A;  4TUG A;  3GVE A;  3THO B;  5B8I A;  1JK7 A;  1S3L A;  3DSC A;  2ZBM A;  3PSO A;  5IOH A;  4Q7F A;  2O8G A;  4DHL A;  2BCD A;  3EGG A;  3KBP A;  4LTY A;  4V0V A;  3EGH A;  3DW8 C;  1AUI A;  2AHD A;  1U32 A;  4FBQ A;  2DFJ A;  3ICF A;  3H68 A;  1Z2X A;  4I5N C;  4KBP A;  4FCX A;  1USH A;  4H1Y P;  4JA9 A;  1OI8 A;  3C5W C;  4J6O A;  4WWL A;  5JPF A;  3ZTV A;  3K7V C;  3IB7 A;  3RL4 A;  3K7W C;  4DT2 A;  2BQ8 X;  3ZU0 A;  2XMO A;  2P6B A; 
#chains in the Genus database with same CATH topology
 2HYP A;  3QG5 C;  1OID A;  1IT6 A;  5C1V A;  1XM7 A;  5JPE A;  1W24 A;  4O43 A;  4UT2 A;  3H60 A;  4IL1 A;  4G9J A;  1HP1 A;  4F0Z A;  4ZX2 A;  4H1S A;  4UT3 A;  2HYO A;  2WDC A;  3H69 A;  4I5L C;  4LU9 A;  3THN A;  1NNW A;  2CV9 A;  2NXF A;  4M0V A;  3IB8 A;  4JA7 A;  3FGA C;  3H66 A;  3T1I A;  4FBK A;  3LL8 A;  2IE3 C;  3E7A A;  4B2O A;  5F3W A;  4ZVZ A;  2A22 A;  3QFO A;  4LAC C;  4O5G A;  4H2B A;  1MF8 A;  3RL3 A;  1S3N A;  3N5U A;  4V0W A;  1HPU A;  4XPN A;  2Z72 A;  2BDX A;  5INB A;  1M63 A;  2YVT A;  1UTE A;  1S8E A;  3HVQ A;  2USH A;  1WAO 1;  1OIE A;  4ORA A;  1HO5 A;  3FLO A;  4YKE A;  1G5B A;  1TCO A;  2Q8U A;  4MP0 A;  2QJC A;  3DSD A;  5EQV A;  2Z06 A;  4UT3 B;  1S70 A;  4V0X A;  3JYF A;  3QFK A;  3QFM A;  5GTU A;  1XZW A;  2IAE C;  2YEQ A;  3D03 A;  3E7B A;  3H63 A;  1V73 A;  4FBW A;  4TUI A;  4NZV A;  5HPE A;  1II7 A;  3QFN A;  2NPP C;  4KKZ A;  3H62 B;  4ORB A;  2GJU A;  2WDE A;  3AUZ A;  3TGH A;  3H61 A;  1T71 A;  4O4K A;  4H2I A;  3CK2 A;  2Z1A A;  3IVD A;  4OR9 A;  4MOY A;  2HY1 A;  2IE4 C;  3H64 A;  3AV0 A;  4O24 A;  2R17 A;  1FJM A;  3P71 C;  1T70 A;  2ZO9 B;  4H2F A;  4ORC A;  1UF3 A;  1WAR A;  4UWQ A;  2NYM C;  1S95 A;  4IYP C;  3RL5 A;  3C9F A;  3PSN A;  2WDF A;  3V4Y A;  2WDD A;  4MOV A;  2KKN A;  3E0J A;  3RQZ A;  5JJT A;  1KBP A;  4HD0 A;  1QFC A;  1QHW A;  2JOG A;  3H67 A;  1SU1 A;  2QFR A;  4DSY A;  2QFP A;  2NYL C;  2O8A A;  1S3M A;  5DNY A;  5J28 A;  4H2G A;  1Z2W A;  3IVE A;  4TUG A;  3GVE A;  3THO B;  5B8I A;  1JK7 A;  1S3L A;  2ZOA A;  3DSC A;  2ZBM A;  3PSO A;  5IOH A;  4Q7F A;  2O8G A;  4DHL A;  2BCD A;  3EGG A;  3KBP A;  4LTY A;  4V0V A;  3EGH A;  3DW8 C;  1AUI A;  2AHD A;  1U32 A;  4FBQ A;  2DFJ A;  3ICF A;  3H68 A;  1Z2X A;  2DXN A;  4I5N C;  4FCX A;  4KBP A;  1USH A;  4H1Y P;  4JA9 A;  1OI8 A;  3C5W C;  4J6O A;  4WWL A;  5JPF A;  3ZTV A;  3K7V C;  3IB7 A;  3RL4 A;  3K7W C;  4DT2 A;  2BQ8 X;  3ZU0 A;  2DXL A;  2XMO A;  2P6B A; 
#chains in the Genus database with same CATH homology
 2HYP A;  3QG5 C;  1OID A;  1IT6 A;  5C1V A;  1XM7 A;  5JPE A;  1W24 A;  4O43 A;  4UT2 A;  3H60 A;  4IL1 A;  4G9J A;  1HP1 A;  4F0Z A;  4ZX2 A;  4H1S A;  4UT3 A;  2HYO A;  2WDC A;  3H69 A;  4I5L C;  4LU9 A;  3THN A;  1NNW A;  2CV9 A;  2NXF A;  4M0V A;  3IB8 A;  4JA7 A;  3FGA C;  3H66 A;  3T1I A;  4FBK A;  3LL8 A;  2IE3 C;  3E7A A;  4B2O A;  5F3W A;  4ZVZ A;  2A22 A;  3QFO A;  4LAC C;  4O5G A;  4H2B A;  1MF8 A;  3RL3 A;  1S3N A;  3N5U A;  4V0W A;  1HPU A;  4XPN A;  2Z72 A;  2BDX A;  5INB A;  1M63 A;  2YVT A;  1UTE A;  1S8E A;  3HVQ A;  2USH A;  1WAO 1;  1OIE A;  4ORA A;  1HO5 A;  3FLO A;  4YKE A;  1G5B A;  1TCO A;  2Q8U A;  4MP0 A;  2QJC A;  3DSD A;  5EQV A;  2Z06 A;  4UT3 B;  1S70 A;  4V0X A;  3JYF A;  3QFK A;  3QFM A;  5GTU A;  1XZW A;  2IAE C;  2YEQ A;  3D03 A;  3E7B A;  3H63 A;  1V73 A;  4FBW A;  4TUI A;  4NZV A;  5HPE A;  1II7 A;  3QFN A;  2NPP C;  4KKZ A;  3H62 B;  4ORB A;  2GJU A;  2WDE A;  3AUZ A;  3TGH A;  3H61 A;  1T71 A;  4O4K A;  4H2I A;  3CK2 A;  2Z1A A;  3IVD A;  4OR9 A;  4MOY A;  2HY1 A;  2IE4 C;  3H64 A;  3AV0 A;  4O24 A;  2R17 A;  1FJM A;  3P71 C;  1T70 A;  2ZO9 B;  4H2F A;  4ORC A;  1UF3 A;  1WAR A;  4UWQ A;  2NYM C;  1S95 A;  4IYP C;  3RL5 A;  3C9F A;  3PSN A;  2WDF A;  3V4Y A;  2WDD A;  4MOV A;  2KKN A;  3E0J A;  3RQZ A;  5JJT A;  1KBP A;  4HD0 A;  1QFC A;  1QHW A;  2JOG A;  3H67 A;  1SU1 A;  2QFR A;  4DSY A;  2QFP A;  2NYL C;  2O8A A;  1S3M A;  5DNY A;  5J28 A;  4H2G A;  1Z2W A;  3IVE A;  4TUG A;  3GVE A;  3THO B;  5B8I A;  1JK7 A;  1S3L A;  2ZOA A;  3DSC A;  2ZBM A;  3PSO A;  5IOH A;  4Q7F A;  2O8G A;  4DHL A;  2BCD A;  3EGG A;  3KBP A;  4LTY A;  4V0V A;  3EGH A;  3DW8 C;  1AUI A;  2AHD A;  1U32 A;  4FBQ A;  2DFJ A;  3ICF A;  3H68 A;  1Z2X A;  2DXN A;  4I5N C;  4FCX A;  4KBP A;  1USH A;  4H1Y P;  4JA9 A;  1OI8 A;  3C5W C;  4J6O A;  4WWL A;  5JPF A;  3ZTV A;  3K7V C;  3IB7 A;  3RL4 A;  3K7W C;  4DT2 A;  2BQ8 X;  3ZU0 A;  2DXL A;  2XMO A;  2P6B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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