2HYOA

Crystal structure of rv0805 n97a mutant
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
256
structure length
227
Chain Sequence
b'PRPDYVLLHISDTHLIDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGAHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCGCNLVHVYPDTVVHSVIP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
pubmed doi rcsb
molecule keywords Rv0805N97A
source organism Mycobacterium tuberculosis
molecule tags Hydrolase
total genus 70
structure length 227
sequence length 256
ec nomenclature ec 3.1.4.53: 3',5'-cyclic-AMP phosphodiesterase.
pdb deposition date 2006-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2hyoA00
1UF3A 2KKNA 1SU1A 3E7AA 2QFRA 1HPUA 3ZU0A 4FBWA 4H1SA 3K7WC 1KBPA 2YVTA 4B2OA 3DW8C 3QFNA 4LU9A 1Z2WA 2NYLC 4F0ZA 2NYMC 3ICFA 4ORBA 4MOVA 4UT2A 3KBPA 1OIDA 2AHDA 2IAEC 1USHA 3P71C 4FBKA 4UT3B 5DNYA 5F3WA 1MF8A 4Q7FA 1FJMA 4DHLA 4V0WA 3HVQA 5IOHA 1QFCA 4FBQA 2CV9A 3THOB 4DSYA 3PSNA 4H2BA 4I5NC 2WDDA 1HO5A 1QHWA 3H67A 5B8IA 3IB7A 2O8GA 5GTUA 4JA9A 2DFJA 2R17A 2JOGA 4LACC 3K7VC 2QJCA 2O8AA 3ZTVA 2Z72A 1HP1A 3PSOA 4O43A 4HD0A 4H2FA 3JYFA 4IL1A 1XZWA 4OR9A 3DSDA 1U32A 3N5UA 1T71A 2A22A 1W24A 3IVDA 2XMOA 4XPNA 3C5WC 1S3NA 1Z2XA 3H64A 4O5GA 3AUZA 3DSCA 1S8EA 1JK7A 3QG5C 2HYPA 3E7BA 2QFPA 3RQZA 4UT3A 4M0VA 4O4KA 1UTEA 5HPEA 1S3MA 5J28A 2WDFA 4MP0A 4ZX2A 1NNWA 4KBPA 4TUGA 3C9FA 4ORAA 1S95A 4H2IA 1OIEA 1G5BA 2Z06A 2Z1AA 4TUIA 3GVEA 2P6BA 4H1YP 3H61A 4V0VA 3TGHA 1TCOA 4J6OA 2IE4C 4DT2A 4LTYA 4V0XA 3QFMA 4FCXA 3EGGA 4ORCA 1WAO1 2GJUA 2NXFA 4YKEA 2WDEA 4IYPC 1XM7A 4H2GA 2ZBMA 3H66A 3AV0A 5INBA 5EQVA 3H68A 3H60A 3RL4A 5JJTA 4KKZA 3QFKA 1IT6A 4MOYA 5C1VA 2BQ8X 1T70A 1V73A 2BDXA 4NZVA 5JPEA 3H63A 5JPFA 3T1IA 2BCDA 2Q8UA 2WDCA 4JA7A 3RL3A 3FGAC 1OI8A 3IVEA 4ZVZA 2HYOA 4I5LC 4O24A 1II7A 3IB8A 3QFOA 2USHA 1WARA 2HY1A 3H62B 1M63A 2NPPC 4UWQA 3V4YA 4WWLA 3LL8A 3EGHA 1S70A 1AUIA 3H69A 3RL5A 1S3LA 3THNA 4G9JA 2IE3C 3CK2A
chains in the Genus database with same CATH superfamily
1UF3A 2KKNA 1SU1A 3E7AA 2QFRA 1HPUA 3ZU0A 4FBWA 4H1SA 3K7WC 1KBPA 2YVTA 4B2OA 3DW8C 3QFNA 4LU9A 1Z2WA 2NYLC 4F0ZA 2NYMC 3ICFA 4ORBA 4MOVA 4UT2A 3KBPA 1OIDA 2AHDA 2IAEC 1USHA 3P71C 4FBKA 4UT3B 5DNYA 5F3WA 1MF8A 4Q7FA 1FJMA 4DHLA 4V0WA 3E0JA 3HVQA 5IOHA 1QFCA 4FBQA 2CV9A 3THOB 4DSYA 3PSNA 4H2BA 4I5NC 2WDDA 1HO5A 1QHWA 3H67A 5B8IA 2ZO9B 3IB7A 2O8GA 5GTUA 4JA9A 2DFJA 2R17A 2JOGA 4LACC 3K7VC 2QJCA 2O8AA 3ZTVA 2Z72A 1HP1A 3PSOA 4O43A 4HD0A 4H2FA 3JYFA 4IL1A 1XZWA 4OR9A 3DSDA 1U32A 3N5UA 1T71A 2A22A 1W24A 3IVDA 2XMOA 4XPNA 3C5WC 1S3NA 1Z2XA 3H64A 4O5GA 3AUZA 3DSCA 1S8EA 1JK7A 3QG5C 2HYPA 3E7BA 2QFPA 3RQZA 4UT3A 4M0VA 4O4KA 1UTEA 5HPEA 1S3MA 5J28A 2WDFA 4MP0A 4ZX2A 1NNWA 4KBPA 4TUGA 3C9FA 4ORAA 1S95A 4H2IA 1OIEA 1G5BA 2Z06A 2Z1AA 4TUIA 3GVEA 2P6BA 4H1YP 3H61A 4V0VA 2ZOAA 3TGHA 2DXLA 1TCOA 4J6OA 2IE4C 4DT2A 4LTYA 4V0XA 3QFMA 4FCXA 3EGGA 4ORCA 1WAO1 2GJUA 2NXFA 3FLOA 4YKEA 2WDEA 4IYPC 1XM7A 4H2GA 2ZBMA 3H66A 3AV0A 5INBA 5EQVA 3H68A 3H60A 3RL4A 5JJTA 4KKZA 3QFKA 1IT6A 4MOYA 5C1VA 2BQ8X 1T70A 1V73A 2BDXA 4NZVA 5JPEA 3H63A 5JPFA 3T1IA 2BCDA 2Q8UA 2WDCA 4JA7A 3RL3A 2YEQA 3FGAC 1OI8A 3D03A 3IVEA 4ZVZA 2HYOA 4I5LC 4O24A 2DXNA 1II7A 3IB8A 3QFOA 2USHA 1WARA 2HY1A 3H62B 1M63A 2NPPC 4UWQA 3V4YA 4WWLA 3LL8A 3EGHA 1S70A 1AUIA 3H69A 3RL5A 1S3LA 3THNA 4G9JA 2IE3C 3CK2A
chains in the Genus database with same CATH topology
1UF3A 2KKNA 1SU1A 3E7AA 2QFRA 1HPUA 3ZU0A 4FBWA 4H1SA 3K7WC 1KBPA 2YVTA 4B2OA 3DW8C 3QFNA 4LU9A 1Z2WA 2NYLC 4F0ZA 2NYMC 3ICFA 4ORBA 4MOVA 4UT2A 3KBPA 1OIDA 2AHDA 2IAEC 1USHA 3P71C 4FBKA 4UT3B 5DNYA 5F3WA 1MF8A 4Q7FA 1FJMA 4DHLA 4V0WA 3E0JA 3HVQA 5IOHA 1QFCA 4FBQA 2CV9A 3THOB 4DSYA 3PSNA 4H2BA 4I5NC 2WDDA 1HO5A 1QHWA 3H67A 5B8IA 2ZO9B 3IB7A 2O8GA 5GTUA 4JA9A 2DFJA 2R17A 2JOGA 4LACC 3K7VC 2QJCA 2O8AA 3ZTVA 2Z72A 1HP1A 3PSOA 4O43A 4HD0A 4H2FA 3JYFA 4IL1A 1XZWA 4OR9A 3DSDA 1U32A 3N5UA 1T71A 2A22A 1W24A 3IVDA 2XMOA 4XPNA 3C5WC 1S3NA 1Z2XA 3H64A 4O5GA 3AUZA 3DSCA 1S8EA 1JK7A 3QG5C 2HYPA 3E7BA 2QFPA 3RQZA 4UT3A 4M0VA 4O4KA 1UTEA 5HPEA 1S3MA 5J28A 2WDFA 4MP0A 4ZX2A 1NNWA 4KBPA 4TUGA 3C9FA 4ORAA 1S95A 4H2IA 1OIEA 1G5BA 2Z06A 2Z1AA 4TUIA 3GVEA 2P6BA 4H1YP 3H61A 4V0VA 2ZOAA 3TGHA 2DXLA 1TCOA 4J6OA 2IE4C 4DT2A 4LTYA 4V0XA 3QFMA 4FCXA 3EGGA 4ORCA 1WAO1 2GJUA 2NXFA 3FLOA 4YKEA 2WDEA 4IYPC 1XM7A 4H2GA 2ZBMA 3H66A 3AV0A 5INBA 5EQVA 3H68A 3H60A 3RL4A 5JJTA 4KKZA 3QFKA 1IT6A 4MOYA 5C1VA 2BQ8X 1T70A 1V73A 2BDXA 4NZVA 5JPEA 3H63A 5JPFA 3T1IA 2BCDA 2Q8UA 2WDCA 4JA7A 3RL3A 2YEQA 3FGAC 1OI8A 3D03A 3IVEA 4ZVZA 2HYOA 4I5LC 4O24A 2DXNA 1II7A 3IB8A 3QFOA 2USHA 1WARA 2HY1A 3H62B 1M63A 2NPPC 4UWQA 3V4YA 4WWLA 3LL8A 3EGHA 1S70A 1AUIA 3H69A 3RL5A 1S3LA 3THNA 4G9JA 2IE3C 3CK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UF3 A;  2KKN A;  1SU1 A;  3E7A A;  2QFR A;  1HPU A;  3ZU0 A;  4FBW A;  4H1S A;  3K7W C;  1KBP A;  2YVT A;  4B2O A;  3DW8 C;  3QFN A;  4LU9 A;  1Z2W A;  2NYL C;  4F0Z A;  2NYM C;  3ICF A;  4ORB A;  4MOV A;  4UT2 A;  3KBP A;  1OID A;  2AHD A;  2IAE C;  1USH A;  3P71 C;  4FBK A;  4UT3 B;  5DNY A;  5F3W A;  1MF8 A;  4Q7F A;  1FJM A;  4DHL A;  4V0W A;  3HVQ A;  5IOH A;  1QFC A;  4FBQ A;  2CV9 A;  3THO B;  4DSY A;  3PSN A;  4H2B A;  4I5N C;  2WDD A;  1HO5 A;  1QHW A;  3H67 A;  5B8I A;  3IB7 A;  2O8G A;  5GTU A;  4JA9 A;  2DFJ A;  2R17 A;  2JOG A;  4LAC C;  3K7V C;  2QJC A;  2O8A A;  3ZTV A;  2Z72 A;  1HP1 A;  3PSO A;  4O43 A;  4HD0 A;  4H2F A;  3JYF A;  4IL1 A;  1XZW A;  4OR9 A;  3DSD A;  1U32 A;  3N5U A;  1T71 A;  2A22 A;  1W24 A;  3IVD A;  2XMO A;  4XPN A;  3C5W C;  1S3N A;  1Z2X A;  3H64 A;  4O5G A;  3AUZ A;  3DSC A;  1S8E A;  1JK7 A;  3QG5 C;  2HYP A;  3E7B A;  2QFP A;  3RQZ A;  4UT3 A;  4M0V A;  4O4K A;  1UTE A;  5HPE A;  1S3M A;  5J28 A;  2WDF A;  4MP0 A;  4ZX2 A;  1NNW A;  4KBP A;  4TUG A;  3C9F A;  4ORA A;  1S95 A;  4H2I A;  1OIE A;  1G5B A;  2Z06 A;  2Z1A A;  4TUI A;  3GVE A;  2P6B A;  4H1Y P;  3H61 A;  4V0V A;  3TGH A;  1TCO A;  4J6O A;  2IE4 C;  4DT2 A;  4LTY A;  4V0X A;  3QFM A;  4FCX A;  3EGG A;  4ORC A;  1WAO 1;  2GJU A;  2NXF A;  4YKE A;  2WDE A;  4IYP C;  1XM7 A;  4H2G A;  2ZBM A;  3H66 A;  3AV0 A;  5INB A;  5EQV A;  3H68 A;  3H60 A;  3RL4 A;  5JJT A;  4KKZ A;  3QFK A;  1IT6 A;  4MOY A;  5C1V A;  2BQ8 X;  1T70 A;  1V73 A;  2BDX A;  4NZV A;  5JPE A;  3H63 A;  5JPF A;  3T1I A;  2BCD A;  2Q8U A;  2WDC A;  4JA7 A;  3RL3 A;  3FGA C;  1OI8 A;  3IVE A;  4ZVZ A;  2HYO A;  4I5L C;  4O24 A;  1II7 A;  3IB8 A;  3QFO A;  2USH A;  1WAR A;  2HY1 A;  3H62 B;  1M63 A;  2NPP C;  4UWQ A;  3V4Y A;  4WWL A;  3LL8 A;  3EGH A;  1S70 A;  1AUI A;  3H69 A;  3RL5 A;  1S3L A;  3THN A;  4G9J A;  2IE3 C;  3CK2 A; 
#chains in the Genus database with same CATH topology
 1UF3 A;  2KKN A;  1SU1 A;  3E7A A;  2QFR A;  1HPU A;  3ZU0 A;  4FBW A;  4H1S A;  3K7W C;  1KBP A;  2YVT A;  4B2O A;  3DW8 C;  3QFN A;  4LU9 A;  1Z2W A;  2NYL C;  4F0Z A;  2NYM C;  3ICF A;  4ORB A;  4MOV A;  4UT2 A;  3KBP A;  1OID A;  2AHD A;  2IAE C;  1USH A;  3P71 C;  4FBK A;  4UT3 B;  5DNY A;  5F3W A;  1MF8 A;  4Q7F A;  1FJM A;  4DHL A;  4V0W A;  3E0J A;  3HVQ A;  5IOH A;  1QFC A;  4FBQ A;  2CV9 A;  3THO B;  4DSY A;  3PSN A;  4H2B A;  4I5N C;  2WDD A;  1HO5 A;  1QHW A;  3H67 A;  5B8I A;  2ZO9 B;  3IB7 A;  2O8G A;  5GTU A;  4JA9 A;  2DFJ A;  2R17 A;  2JOG A;  4LAC C;  3K7V C;  2QJC A;  2O8A A;  3ZTV A;  2Z72 A;  1HP1 A;  3PSO A;  4O43 A;  4HD0 A;  4H2F A;  3JYF A;  4IL1 A;  1XZW A;  4OR9 A;  3DSD A;  1U32 A;  3N5U A;  1T71 A;  2A22 A;  1W24 A;  3IVD A;  2XMO A;  4XPN A;  3C5W C;  1S3N A;  1Z2X A;  3H64 A;  4O5G A;  3AUZ A;  3DSC A;  1S8E A;  1JK7 A;  3QG5 C;  2HYP A;  3E7B A;  2QFP A;  3RQZ A;  4UT3 A;  4M0V A;  4O4K A;  1UTE A;  5HPE A;  1S3M A;  5J28 A;  2WDF A;  4MP0 A;  4ZX2 A;  1NNW A;  4KBP A;  4TUG A;  3C9F A;  4ORA A;  1S95 A;  4H2I A;  1OIE A;  1G5B A;  2Z06 A;  2Z1A A;  4TUI A;  3GVE A;  2P6B A;  4H1Y P;  3H61 A;  4V0V A;  2ZOA A;  3TGH A;  2DXL A;  1TCO A;  4J6O A;  2IE4 C;  4DT2 A;  4LTY A;  4V0X A;  3QFM A;  4FCX A;  3EGG A;  4ORC A;  1WAO 1;  2GJU A;  2NXF A;  3FLO A;  4YKE A;  2WDE A;  4IYP C;  1XM7 A;  4H2G A;  2ZBM A;  3H66 A;  3AV0 A;  5INB A;  5EQV A;  3H68 A;  3H60 A;  3RL4 A;  5JJT A;  4KKZ A;  3QFK A;  1IT6 A;  4MOY A;  5C1V A;  2BQ8 X;  1T70 A;  1V73 A;  2BDX A;  4NZV A;  5JPE A;  3H63 A;  5JPF A;  3T1I A;  2BCD A;  2Q8U A;  2WDC A;  4JA7 A;  3RL3 A;  2YEQ A;  3FGA C;  1OI8 A;  3D03 A;  3IVE A;  4ZVZ A;  2HYO A;  4I5L C;  4O24 A;  2DXN A;  1II7 A;  3IB8 A;  3QFO A;  2USH A;  1WAR A;  2HY1 A;  3H62 B;  1M63 A;  2NPP C;  4UWQ A;  3V4Y A;  4WWL A;  3LL8 A;  3EGH A;  1S70 A;  1AUI A;  3H69 A;  3RL5 A;  1S3L A;  3THN A;  4G9J A;  2IE3 C;  3CK2 A; 
#chains in the Genus database with same CATH homology
 1UF3 A;  2KKN A;  1SU1 A;  3E7A A;  2QFR A;  1HPU A;  3ZU0 A;  4FBW A;  4H1S A;  3K7W C;  1KBP A;  2YVT A;  4B2O A;  3DW8 C;  3QFN A;  4LU9 A;  1Z2W A;  2NYL C;  4F0Z A;  2NYM C;  3ICF A;  4ORB A;  4MOV A;  4UT2 A;  3KBP A;  1OID A;  2AHD A;  2IAE C;  1USH A;  3P71 C;  4FBK A;  4UT3 B;  5DNY A;  5F3W A;  1MF8 A;  4Q7F A;  1FJM A;  4DHL A;  4V0W A;  3E0J A;  3HVQ A;  5IOH A;  1QFC A;  4FBQ A;  2CV9 A;  3THO B;  4DSY A;  3PSN A;  4H2B A;  4I5N C;  2WDD A;  1HO5 A;  1QHW A;  3H67 A;  5B8I A;  2ZO9 B;  3IB7 A;  2O8G A;  5GTU A;  4JA9 A;  2DFJ A;  2R17 A;  2JOG A;  4LAC C;  3K7V C;  2QJC A;  2O8A A;  3ZTV A;  2Z72 A;  1HP1 A;  3PSO A;  4O43 A;  4HD0 A;  4H2F A;  3JYF A;  4IL1 A;  1XZW A;  4OR9 A;  3DSD A;  1U32 A;  3N5U A;  1T71 A;  2A22 A;  1W24 A;  3IVD A;  2XMO A;  4XPN A;  3C5W C;  1S3N A;  1Z2X A;  3H64 A;  4O5G A;  3AUZ A;  3DSC A;  1S8E A;  1JK7 A;  3QG5 C;  2HYP A;  3E7B A;  2QFP A;  3RQZ A;  4UT3 A;  4M0V A;  4O4K A;  1UTE A;  5HPE A;  1S3M A;  5J28 A;  2WDF A;  4MP0 A;  4ZX2 A;  1NNW A;  4KBP A;  4TUG A;  3C9F A;  4ORA A;  1S95 A;  4H2I A;  1OIE A;  1G5B A;  2Z06 A;  2Z1A A;  4TUI A;  3GVE A;  2P6B A;  4H1Y P;  3H61 A;  4V0V A;  2ZOA A;  3TGH A;  2DXL A;  1TCO A;  4J6O A;  2IE4 C;  4DT2 A;  4LTY A;  4V0X A;  3QFM A;  4FCX A;  3EGG A;  4ORC A;  1WAO 1;  2GJU A;  2NXF A;  3FLO A;  4YKE A;  2WDE A;  4IYP C;  1XM7 A;  4H2G A;  2ZBM A;  3H66 A;  3AV0 A;  5INB A;  5EQV A;  3H68 A;  3H60 A;  3RL4 A;  5JJT A;  4KKZ A;  3QFK A;  1IT6 A;  4MOY A;  5C1V A;  2BQ8 X;  1T70 A;  1V73 A;  2BDX A;  4NZV A;  5JPE A;  3H63 A;  5JPF A;  3T1I A;  2BCD A;  2Q8U A;  2WDC A;  4JA7 A;  3RL3 A;  2YEQ A;  3FGA C;  1OI8 A;  3D03 A;  3IVE A;  4ZVZ A;  2HYO A;  4I5L C;  4O24 A;  2DXN A;  1II7 A;  3IB8 A;  3QFO A;  2USH A;  1WAR A;  2HY1 A;  3H62 B;  1M63 A;  2NPP C;  4UWQ A;  3V4Y A;  4WWL A;  3LL8 A;  3EGH A;  1S70 A;  1AUI A;  3H69 A;  3RL5 A;  1S3L A;  3THN A;  4G9J A;  2IE3 C;  3CK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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