3FLOA

Crystal structure of the carboxyl-terminal domain of yeast dna polymerase alpha in complex with its b subunit
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
458
structure length
433
Chain Sequence
RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Saccharomyces cerevisiae
publication title 3D architecture of DNA Pol alpha reveals the functional core of multi-subunit replicative polymerases
pubmed doi rcsb
molecule keywords DNA polymerase alpha subunit B
total genus 123
structure length 433
sequence length 458
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2008-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.60 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3floA02
3FLOA
chains in the Genus database with same CATH superfamily
2USHA 5F3WA 3C9FA 1UF3A 4G9JA 3THOB 3DSCA 2A22A 2ZBMA 2HYPA 4O4KA 1AUIA 4IYPC 4F0ZA 2GJUA 1OIEA 1Z2WA 3E7BA 4FCXA 1S70A 3P71C 4H2FA 1M63A 2QFRA 2AHDA 2WDDA 3IVEA 2YVTA 1QHWA 3AUZA 2NPPC 3DSDA 1HPUA 3IB8A 4ORCA 2IE3C 3H61A 4IL1A 4H1YP 1XZWA 3H63A 2O8AA 2HYOA 3H62B 4O43A 3QFOA 4V0WA 2WDCA 2BCDA 3H60A 2HY1A 1WARA 1V73A 1S8EA 2Z06A 2QFPA 3ZU0A 4J6OA 2Z72A 3H69A 4ZX2A 5IOHA 3HVQA 3C5WC 1QFCA 3DW8C 3TGHA 1XM7A 2Z1AA 4FBWA 5C1VA 3GVEA 2NYLC 3FLOA 3H66A 4Q7FA 4O24A 3QFNA 3RL3A 2BQ8X 2DFJA 4O5GA 3N5UA 4KBPA 1IT6A 4TUGA 4M0VA 2DXLA 3THNA 3EGHA 4NZVA 5JJTA 4H2GA 4I5LC 1HP1A 4MOVA 1W24A 2ZO9B 4YKEA 1T71A 1S3MA 1G5BA 1SU1A 4HD0A 3RQZA 3H64A 3AV0A 3E7AA 3H67A 4LTYA 5DNYA 5JPFA 3QFKA 3ICFA 1KBPA 1NNWA 1II7A 2R17A 1U32A 3K7WC 4H2BA 5J28A 3RL5A 4I5NC 4UT2A 1MF8A 2ZOAA 1JK7A 1UTEA 3QG5C 4XPNA 2P6BA 5INBA 3PSOA 4ZVZA 3D03A 4FBKA 1HO5A 1TCOA 3H68A 4TUIA 2JOGA 3LL8A 4H2IA 1S3NA 3PSNA 4V0XA 3RL4A 1Z2XA 2WDEA 4ORBA 1S3LA 2IE4C 2CV9A 4LU9A 4OR9A 1OIDA 1S95A 4FBQA 3T1IA 4DSYA 2NXFA 1FJMA 3EGGA 1USHA 3K7VC 4MOYA 2O8GA 5JPEA 4UWQA 4KKZA 4MP0A 4DHLA 3JYFA 4UT3B 4JA7A 2YEQA 3V4YA 3KBPA 3IVDA 4JA9A 5EQVA 1WAO1 2IAEC 2DXNA 2WDFA 4V0VA 4ORAA 1OI8A 5HPEA 4B2OA 2XMOA 3FGAC 2KKNA 3E0JA 3IB7A 5B8IA 3ZTVA 4UT3A 2QJCA 4DT2A 4H1SA 5GTUA 3QFMA 2Q8UA 2NYMC 4WWLA 4LACC 3CK2A 1T70A 2BDXA
chains in the Genus database with same CATH topology
2USHA 5F3WA 3C9FA 1UF3A 4G9JA 3THOB 3DSCA 2A22A 2ZBMA 2HYPA 4O4KA 1AUIA 4IYPC 4F0ZA 2GJUA 1OIEA 1Z2WA 3E7BA 4FCXA 1S70A 3P71C 4H2FA 1M63A 2QFRA 2AHDA 2WDDA 3IVEA 2YVTA 1QHWA 3AUZA 2NPPC 3DSDA 1HPUA 3IB8A 4ORCA 2IE3C 3H61A 4IL1A 4H1YP 1XZWA 3H63A 2O8AA 2HYOA 3H62B 4O43A 3QFOA 4V0WA 2WDCA 2BCDA 3H60A 2HY1A 1WARA 1V73A 1S8EA 2Z06A 2QFPA 3ZU0A 4J6OA 2Z72A 3H69A 4ZX2A 5IOHA 3HVQA 3C5WC 1QFCA 3DW8C 3TGHA 1XM7A 2Z1AA 4FBWA 5C1VA 3GVEA 2NYLC 3FLOA 3H66A 4Q7FA 4O24A 3QFNA 3RL3A 2BQ8X 2DFJA 4O5GA 3N5UA 4KBPA 1IT6A 4TUGA 4M0VA 2DXLA 3THNA 3EGHA 4NZVA 5JJTA 4H2GA 4I5LC 1HP1A 4MOVA 1W24A 2ZO9B 4YKEA 1T71A 1S3MA 1G5BA 1SU1A 4HD0A 3RQZA 3H64A 3AV0A 3E7AA 3H67A 4LTYA 5DNYA 5JPFA 3QFKA 3ICFA 1KBPA 1NNWA 1II7A 2R17A 1U32A 3K7WC 4H2BA 5J28A 3RL5A 4I5NC 4UT2A 1MF8A 2ZOAA 1JK7A 1UTEA 3QG5C 4XPNA 2P6BA 5INBA 3PSOA 4ZVZA 3D03A 4FBKA 1HO5A 1TCOA 3H68A 4TUIA 2JOGA 3LL8A 4H2IA 1S3NA 3PSNA 4V0XA 3RL4A 1Z2XA 2WDEA 4ORBA 1S3LA 2IE4C 2CV9A 4LU9A 4OR9A 1OIDA 1S95A 4FBQA 3T1IA 4DSYA 2NXFA 1FJMA 3EGGA 1USHA 3K7VC 4MOYA 2O8GA 5JPEA 4UWQA 4KKZA 4MP0A 4DHLA 3JYFA 4UT3B 4JA7A 2YEQA 3V4YA 3KBPA 3IVDA 4JA9A 5EQVA 1WAO1 2IAEC 2DXNA 2WDFA 4V0VA 4ORAA 1OI8A 5HPEA 4B2OA 2XMOA 3FGAC 2KKNA 3E0JA 3IB7A 5B8IA 3ZTVA 4UT3A 2QJCA 4DT2A 4H1SA 5GTUA 3QFMA 2Q8UA 2NYMC 4WWLA 4LACC 3CK2A 1T70A 2BDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FLO A; 
#chains in the Genus database with same CATH topology
 2USH A;  5F3W A;  3C9F A;  1UF3 A;  4G9J A;  3THO B;  3DSC A;  2A22 A;  2ZBM A;  2HYP A;  4O4K A;  1AUI A;  4IYP C;  4F0Z A;  2GJU A;  1OIE A;  1Z2W A;  3E7B A;  4FCX A;  1S70 A;  3P71 C;  4H2F A;  1M63 A;  2QFR A;  2AHD A;  2WDD A;  3IVE A;  2YVT A;  1QHW A;  3AUZ A;  2NPP C;  3DSD A;  1HPU A;  3IB8 A;  4ORC A;  2IE3 C;  3H61 A;  4IL1 A;  4H1Y P;  1XZW A;  3H63 A;  2O8A A;  2HYO A;  3H62 B;  4O43 A;  3QFO A;  4V0W A;  2WDC A;  2BCD A;  3H60 A;  2HY1 A;  1WAR A;  1V73 A;  1S8E A;  2Z06 A;  2QFP A;  3ZU0 A;  4J6O A;  2Z72 A;  3H69 A;  4ZX2 A;  5IOH A;  3HVQ A;  3C5W C;  1QFC A;  3DW8 C;  3TGH A;  1XM7 A;  2Z1A A;  4FBW A;  5C1V A;  3GVE A;  2NYL C;  3FLO A;  3H66 A;  4Q7F A;  4O24 A;  3QFN A;  3RL3 A;  2BQ8 X;  2DFJ A;  4O5G A;  3N5U A;  4KBP A;  1IT6 A;  4TUG A;  4M0V A;  2DXL A;  3THN A;  3EGH A;  4NZV A;  5JJT A;  4H2G A;  4I5L C;  1HP1 A;  4MOV A;  1W24 A;  2ZO9 B;  4YKE A;  1T71 A;  1S3M A;  1G5B A;  1SU1 A;  4HD0 A;  3RQZ A;  3H64 A;  3AV0 A;  3E7A A;  3H67 A;  4LTY A;  5DNY A;  5JPF A;  3QFK A;  3ICF A;  1KBP A;  1NNW A;  1II7 A;  2R17 A;  1U32 A;  3K7W C;  4H2B A;  5J28 A;  3RL5 A;  4I5N C;  4UT2 A;  1MF8 A;  2ZOA A;  1JK7 A;  1UTE A;  3QG5 C;  4XPN A;  2P6B A;  5INB A;  3PSO A;  4ZVZ A;  3D03 A;  4FBK A;  1HO5 A;  1TCO A;  3H68 A;  4TUI A;  2JOG A;  3LL8 A;  4H2I A;  1S3N A;  3PSN A;  4V0X A;  3RL4 A;  1Z2X A;  2WDE A;  4ORB A;  1S3L A;  2IE4 C;  2CV9 A;  4LU9 A;  4OR9 A;  1OID A;  1S95 A;  4FBQ A;  3T1I A;  4DSY A;  2NXF A;  1FJM A;  3EGG A;  1USH A;  3K7V C;  4MOY A;  2O8G A;  5JPE A;  4UWQ A;  4KKZ A;  4MP0 A;  4DHL A;  3JYF A;  4UT3 B;  4JA7 A;  2YEQ A;  3V4Y A;  3KBP A;  3IVD A;  4JA9 A;  5EQV A;  1WAO 1;  2IAE C;  2DXN A;  2WDF A;  4V0V A;  4ORA A;  1OI8 A;  5HPE A;  4B2O A;  2XMO A;  3FGA C;  2KKN A;  3E0J A;  3IB7 A;  5B8I A;  3ZTV A;  4UT3 A;  2QJC A;  4DT2 A;  4H1S A;  5GTU A;  3QFM A;  2Q8U A;  2NYM C;  4WWL A;  4LAC C;  3CK2 A;  1T70 A;  2BDX A; 
#chains in the Genus database with same CATH homology
 2USH A;  5F3W A;  3C9F A;  1UF3 A;  4G9J A;  3THO B;  3DSC A;  2A22 A;  2ZBM A;  2HYP A;  4O4K A;  1AUI A;  4IYP C;  4F0Z A;  2GJU A;  1OIE A;  1Z2W A;  3E7B A;  4FCX A;  1S70 A;  3P71 C;  4H2F A;  1M63 A;  2QFR A;  2AHD A;  2WDD A;  3IVE A;  2YVT A;  1QHW A;  3AUZ A;  2NPP C;  3DSD A;  1HPU A;  3IB8 A;  4ORC A;  2IE3 C;  3H61 A;  4IL1 A;  4H1Y P;  1XZW A;  3H63 A;  2O8A A;  2HYO A;  3H62 B;  4O43 A;  3QFO A;  4V0W A;  2WDC A;  2BCD A;  3H60 A;  2HY1 A;  1WAR A;  1V73 A;  1S8E A;  2Z06 A;  2QFP A;  3ZU0 A;  4J6O A;  2Z72 A;  3H69 A;  4ZX2 A;  5IOH A;  3HVQ A;  3C5W C;  1QFC A;  3DW8 C;  3TGH A;  1XM7 A;  2Z1A A;  4FBW A;  5C1V A;  3GVE A;  2NYL C;  3FLO A;  3H66 A;  4Q7F A;  4O24 A;  3QFN A;  3RL3 A;  2BQ8 X;  2DFJ A;  4O5G A;  3N5U A;  4KBP A;  1IT6 A;  4TUG A;  4M0V A;  2DXL A;  3THN A;  3EGH A;  4NZV A;  5JJT A;  4H2G A;  4I5L C;  1HP1 A;  4MOV A;  1W24 A;  2ZO9 B;  4YKE A;  1T71 A;  1S3M A;  1G5B A;  1SU1 A;  4HD0 A;  3RQZ A;  3H64 A;  3AV0 A;  3E7A A;  3H67 A;  4LTY A;  5DNY A;  5JPF A;  3QFK A;  3ICF A;  1KBP A;  1NNW A;  1II7 A;  2R17 A;  1U32 A;  3K7W C;  4H2B A;  5J28 A;  3RL5 A;  4I5N C;  4UT2 A;  1MF8 A;  2ZOA A;  1JK7 A;  1UTE A;  3QG5 C;  4XPN A;  2P6B A;  5INB A;  3PSO A;  4ZVZ A;  3D03 A;  4FBK A;  1HO5 A;  1TCO A;  3H68 A;  4TUI A;  2JOG A;  3LL8 A;  4H2I A;  1S3N A;  3PSN A;  4V0X A;  3RL4 A;  1Z2X A;  2WDE A;  4ORB A;  1S3L A;  2IE4 C;  2CV9 A;  4LU9 A;  4OR9 A;  1OID A;  1S95 A;  4FBQ A;  3T1I A;  4DSY A;  2NXF A;  1FJM A;  3EGG A;  1USH A;  3K7V C;  4MOY A;  2O8G A;  5JPE A;  4UWQ A;  4KKZ A;  4MP0 A;  4DHL A;  3JYF A;  4UT3 B;  4JA7 A;  2YEQ A;  3V4Y A;  3KBP A;  3IVD A;  4JA9 A;  5EQV A;  1WAO 1;  2IAE C;  2DXN A;  2WDF A;  4V0V A;  4ORA A;  1OI8 A;  5HPE A;  4B2O A;  2XMO A;  3FGA C;  2KKN A;  3E0J A;  3IB7 A;  5B8I A;  3ZTV A;  4UT3 A;  2QJC A;  4DT2 A;  4H1S A;  5GTU A;  3QFM A;  2Q8U A;  2NYM C;  4WWL A;  4LAC C;  3CK2 A;  1T70 A;  2BDX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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