3FLOA

Crystal structure of the carboxyl-terminal domain of yeast dna polymerase alpha in complex with its b subunit
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
458
structure length
433
Chain Sequence
RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA polymerase alpha subunit B
publication title 3D architecture of DNA Pol alpha reveals the functional core of multi-subunit replicative polymerases
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transferase
total genus 123
structure length 433
sequence length 458
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2008-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.60 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3floA02
3FLOA
chains in the Genus database with same CATH superfamily
5C1VA 4ORAA 4Q7FA 2DFJA 2O8AA 2XMOA 5INBA 3H63A 2DXNA 1QFCA 2A22A 1SU1A 3QFOA 1V73A 4H2BA 2QFPA 2HYPA 3K7WC 1U32A 4ZVZA 1UF3A 3T1IA 3QFMA 2CV9A 3GVEA 3ZU0A 4UT3B 1T70A 2JOGA 4IYPC 3TGHA 5JPEA 4H1YP 1MF8A 3LL8A 3QG5C 3CK2A 2NXFA 1S95A 4DHLA 4O4KA 1NNWA 2O8GA 2NYLC 3QFKA 1OI8A 3H60A 3H62B 3ICFA 3IVEA 2ZOAA 5DNYA 3IVDA 3DSDA 2YEQA 4UT3A 3V4YA 3HVQA 3FLOA 4LU9A 4WWLA 1HP1A 2ZBMA 4ORCA 4UWQA 2WDDA 4OR9A 1HPUA 4J6OA 2IE3C 1QHWA 2GJUA 3THOB 1II7A 2Z72A 4KBPA 2BQ8X 2P6BA 4F0ZA 2IE4C 1KBPA 4TUIA 2NPPC 3PSOA 3DSCA 4MP0A 3RL3A 4H2FA 1S70A 2DXLA 4H1SA 4M0VA 5JJTA 2QFRA 3H69A 1S3MA 4YKEA 5J28A 4UT2A 3RQZA 3E7BA 4V0VA 3IB8A 4FCXA 2QJCA 4ZX2A 1USHA 4NZVA 3H64A 2WDEA 3EGGA 3JYFA 4FBWA 4HD0A 1T71A 3QFNA 2Q8UA 1S3NA 4MOVA 1G5BA 1OIEA 1XM7A 3C5WC 1M63A 4XPNA 4FBKA 1AUIA 4O24A 5B8IA 1WARA 2HYOA 4MOYA 5HPEA 4O43A 3N5UA 3K7VC 3H61A 3KBPA 1Z2WA 2WDFA 1S3LA 2Z1AA 1XZWA 3P71C 3AUZA 5JPFA 2USHA 3PSNA 5IOHA 1JK7A 4JA7A 2BCDA 1S8EA 3E0JA 4IL1A 3E7AA 5F3WA 4H2IA 4DSYA 4I5LC 4O5GA 2BDXA 2IAEC 3FGAC 4KKZA 2ZO9B 1FJMA 1TCOA 3D03A 3EGHA 4FBQA 3IB7A 5GTUA 4LACC 4B2OA 2NYMC 4JA9A 3H66A 2R17A 2HY1A 2YVTA 2AHDA 5EQVA 4H2GA 1W24A 1WAO1 1UTEA 1HO5A 3C9FA 4I5NC 4ORBA 3AV0A 3RL4A 3RL5A 3THNA 1IT6A 1OIDA 3H68A 4LTYA 3ZTVA 4DT2A 2KKNA 2WDCA 3H67A 4V0XA 4TUGA 2Z06A 3DW8C 4G9JA 4V0WA 1Z2XA
chains in the Genus database with same CATH topology
5C1VA 4ORAA 4Q7FA 2DFJA 2O8AA 2XMOA 5INBA 3H63A 2DXNA 1QFCA 2A22A 1SU1A 3QFOA 1V73A 4H2BA 2QFPA 2HYPA 3K7WC 1U32A 4ZVZA 1UF3A 3T1IA 3QFMA 2CV9A 3GVEA 3ZU0A 4UT3B 1T70A 2JOGA 4IYPC 3TGHA 5JPEA 4H1YP 1MF8A 3LL8A 3QG5C 3CK2A 2NXFA 1S95A 4DHLA 4O4KA 1NNWA 2O8GA 2NYLC 3QFKA 1OI8A 3H60A 3H62B 3ICFA 3IVEA 2ZOAA 5DNYA 3IVDA 3DSDA 2YEQA 4UT3A 3V4YA 3HVQA 3FLOA 4LU9A 4WWLA 1HP1A 2ZBMA 4ORCA 4UWQA 2WDDA 4OR9A 1HPUA 4J6OA 2IE3C 1QHWA 2GJUA 3THOB 1II7A 2Z72A 4KBPA 2BQ8X 2P6BA 4F0ZA 2IE4C 1KBPA 4TUIA 2NPPC 3PSOA 3DSCA 4MP0A 3RL3A 4H2FA 1S70A 2DXLA 4H1SA 4M0VA 5JJTA 2QFRA 3H69A 1S3MA 4YKEA 5J28A 4UT2A 3RQZA 3E7BA 4V0VA 3IB8A 4FCXA 2QJCA 4ZX2A 1USHA 4NZVA 3H64A 2WDEA 3EGGA 3JYFA 4FBWA 4HD0A 1T71A 3QFNA 2Q8UA 1S3NA 4MOVA 1G5BA 1OIEA 1XM7A 3C5WC 1M63A 4XPNA 4FBKA 1AUIA 4O24A 5B8IA 1WARA 2HYOA 4MOYA 5HPEA 4O43A 3N5UA 3K7VC 3H61A 3KBPA 1Z2WA 2WDFA 1S3LA 2Z1AA 1XZWA 3P71C 3AUZA 5JPFA 2USHA 3PSNA 5IOHA 1JK7A 4JA7A 2BCDA 1S8EA 3E0JA 4IL1A 3E7AA 5F3WA 4H2IA 4DSYA 4I5LC 4O5GA 2BDXA 2IAEC 3FGAC 4KKZA 2ZO9B 1FJMA 1TCOA 3D03A 3EGHA 4FBQA 3IB7A 5GTUA 4LACC 4B2OA 2NYMC 4JA9A 3H66A 2R17A 2HY1A 2YVTA 2AHDA 5EQVA 4H2GA 1W24A 1WAO1 1UTEA 1HO5A 3C9FA 4I5NC 4ORBA 3AV0A 3RL4A 3RL5A 3THNA 1IT6A 1OIDA 3H68A 4LTYA 3ZTVA 4DT2A 2KKNA 2WDCA 3H67A 4V0XA 4TUGA 2Z06A 3DW8C 4G9JA 4V0WA 1Z2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FLO A; 
#chains in the Genus database with same CATH topology
 5C1V A;  4ORA A;  4Q7F A;  2DFJ A;  2O8A A;  2XMO A;  5INB A;  3H63 A;  2DXN A;  1QFC A;  2A22 A;  1SU1 A;  3QFO A;  1V73 A;  4H2B A;  2QFP A;  2HYP A;  3K7W C;  1U32 A;  4ZVZ A;  1UF3 A;  3T1I A;  3QFM A;  2CV9 A;  3GVE A;  3ZU0 A;  4UT3 B;  1T70 A;  2JOG A;  4IYP C;  3TGH A;  5JPE A;  4H1Y P;  1MF8 A;  3LL8 A;  3QG5 C;  3CK2 A;  2NXF A;  1S95 A;  4DHL A;  4O4K A;  1NNW A;  2O8G A;  2NYL C;  3QFK A;  1OI8 A;  3H60 A;  3H62 B;  3ICF A;  3IVE A;  2ZOA A;  5DNY A;  3IVD A;  3DSD A;  2YEQ A;  4UT3 A;  3V4Y A;  3HVQ A;  3FLO A;  4LU9 A;  4WWL A;  1HP1 A;  2ZBM A;  4ORC A;  4UWQ A;  2WDD A;  4OR9 A;  1HPU A;  4J6O A;  2IE3 C;  1QHW A;  2GJU A;  3THO B;  1II7 A;  2Z72 A;  4KBP A;  2BQ8 X;  2P6B A;  4F0Z A;  2IE4 C;  1KBP A;  4TUI A;  2NPP C;  3PSO A;  3DSC A;  4MP0 A;  3RL3 A;  4H2F A;  1S70 A;  2DXL A;  4H1S A;  4M0V A;  5JJT A;  2QFR A;  3H69 A;  1S3M A;  4YKE A;  5J28 A;  4UT2 A;  3RQZ A;  3E7B A;  4V0V A;  3IB8 A;  4FCX A;  2QJC A;  4ZX2 A;  1USH A;  4NZV A;  3H64 A;  2WDE A;  3EGG A;  3JYF A;  4FBW A;  4HD0 A;  1T71 A;  3QFN A;  2Q8U A;  1S3N A;  4MOV A;  1G5B A;  1OIE A;  1XM7 A;  3C5W C;  1M63 A;  4XPN A;  4FBK A;  1AUI A;  4O24 A;  5B8I A;  1WAR A;  2HYO A;  4MOY A;  5HPE A;  4O43 A;  3N5U A;  3K7V C;  3H61 A;  3KBP A;  1Z2W A;  2WDF A;  1S3L A;  2Z1A A;  1XZW A;  3P71 C;  3AUZ A;  5JPF A;  2USH A;  3PSN A;  5IOH A;  1JK7 A;  4JA7 A;  2BCD A;  1S8E A;  3E0J A;  4IL1 A;  3E7A A;  5F3W A;  4H2I A;  4DSY A;  4I5L C;  4O5G A;  2BDX A;  2IAE C;  3FGA C;  4KKZ A;  2ZO9 B;  1FJM A;  1TCO A;  3D03 A;  3EGH A;  4FBQ A;  3IB7 A;  5GTU A;  4LAC C;  4B2O A;  2NYM C;  4JA9 A;  3H66 A;  2R17 A;  2HY1 A;  2YVT A;  2AHD A;  5EQV A;  4H2G A;  1W24 A;  1WAO 1;  1UTE A;  1HO5 A;  3C9F A;  4I5N C;  4ORB A;  3AV0 A;  3RL4 A;  3RL5 A;  3THN A;  1IT6 A;  1OID A;  3H68 A;  4LTY A;  3ZTV A;  4DT2 A;  2KKN A;  2WDC A;  3H67 A;  4V0X A;  4TUG A;  2Z06 A;  3DW8 C;  4G9J A;  4V0W A;  1Z2X A; 
#chains in the Genus database with same CATH homology
 5C1V A;  4ORA A;  4Q7F A;  2DFJ A;  2O8A A;  2XMO A;  5INB A;  3H63 A;  2DXN A;  1QFC A;  2A22 A;  1SU1 A;  3QFO A;  1V73 A;  4H2B A;  2QFP A;  2HYP A;  3K7W C;  1U32 A;  4ZVZ A;  1UF3 A;  3T1I A;  3QFM A;  2CV9 A;  3GVE A;  3ZU0 A;  4UT3 B;  1T70 A;  2JOG A;  4IYP C;  3TGH A;  5JPE A;  4H1Y P;  1MF8 A;  3LL8 A;  3QG5 C;  3CK2 A;  2NXF A;  1S95 A;  4DHL A;  4O4K A;  1NNW A;  2O8G A;  2NYL C;  3QFK A;  1OI8 A;  3H60 A;  3H62 B;  3ICF A;  3IVE A;  2ZOA A;  5DNY A;  3IVD A;  3DSD A;  2YEQ A;  4UT3 A;  3V4Y A;  3HVQ A;  3FLO A;  4LU9 A;  4WWL A;  1HP1 A;  2ZBM A;  4ORC A;  4UWQ A;  2WDD A;  4OR9 A;  1HPU A;  4J6O A;  2IE3 C;  1QHW A;  2GJU A;  3THO B;  1II7 A;  2Z72 A;  4KBP A;  2BQ8 X;  2P6B A;  4F0Z A;  2IE4 C;  1KBP A;  4TUI A;  2NPP C;  3PSO A;  3DSC A;  4MP0 A;  3RL3 A;  4H2F A;  1S70 A;  2DXL A;  4H1S A;  4M0V A;  5JJT A;  2QFR A;  3H69 A;  1S3M A;  4YKE A;  5J28 A;  4UT2 A;  3RQZ A;  3E7B A;  4V0V A;  3IB8 A;  4FCX A;  2QJC A;  4ZX2 A;  1USH A;  4NZV A;  3H64 A;  2WDE A;  3EGG A;  3JYF A;  4FBW A;  4HD0 A;  1T71 A;  3QFN A;  2Q8U A;  1S3N A;  4MOV A;  1G5B A;  1OIE A;  1XM7 A;  3C5W C;  1M63 A;  4XPN A;  4FBK A;  1AUI A;  4O24 A;  5B8I A;  1WAR A;  2HYO A;  4MOY A;  5HPE A;  4O43 A;  3N5U A;  3K7V C;  3H61 A;  3KBP A;  1Z2W A;  2WDF A;  1S3L A;  2Z1A A;  1XZW A;  3P71 C;  3AUZ A;  5JPF A;  2USH A;  3PSN A;  5IOH A;  1JK7 A;  4JA7 A;  2BCD A;  1S8E A;  3E0J A;  4IL1 A;  3E7A A;  5F3W A;  4H2I A;  4DSY A;  4I5L C;  4O5G A;  2BDX A;  2IAE C;  3FGA C;  4KKZ A;  2ZO9 B;  1FJM A;  1TCO A;  3D03 A;  3EGH A;  4FBQ A;  3IB7 A;  5GTU A;  4LAC C;  4B2O A;  2NYM C;  4JA9 A;  3H66 A;  2R17 A;  2HY1 A;  2YVT A;  2AHD A;  5EQV A;  4H2G A;  1W24 A;  1WAO 1;  1UTE A;  1HO5 A;  3C9F A;  4I5N C;  4ORB A;  3AV0 A;  3RL4 A;  3RL5 A;  3THN A;  1IT6 A;  1OID A;  3H68 A;  4LTY A;  3ZTV A;  4DT2 A;  2KKN A;  2WDC A;  3H67 A;  4V0X A;  4TUG A;  2Z06 A;  3DW8 C;  4G9J A;  4V0W A;  1Z2X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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