2WDDA

Termus thermophilus sulfate thiohydrolase soxb in complex with sulfate
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
543
structure length
542
Chain Sequence
LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 190
structure length 542
sequence length 543
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wddA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wddA03
1IT6A 4B2OA 1U32A 4NZVA 1WARA 5HPEA 3DW8C 4UT3B 4YKEA 2YVTA 4MP0A 2P6BA 4ORCA 4H2BA 4UT3A 2BCDA 2IE3C 2WDCA 4KKZA 3QFNA 2Z1AA 2O8AA 2WDEA 2QFPA 4MOVA 3C9FA 3QFOA 1OIEA 2QFRA 3H66A 4G9JA 1SU1A 1OIDA 2AHDA 4UT2A 3FGAC 2WDDA 5JPEA 1V73A 3C5WC 4ORAA 3JYFA 1JK7A 2NPPC 4FCXA 4JA7A 5INBA 2HY1A 3QG5C 1USHA 3P71C 4I5NC 4O24A 5J28A 3LL8A 3IVDA 4H1YP 4I5LC 4H2GA 3E7BA 5GTUA 5JPFA 1QHWA 4HD0A 2Q8UA 4DHLA 4IYPC 4XPNA 1XM7A 2USHA 5C1VA 1UTEA 2BDXA 1HP1A 2NXFA 3RL5A 3ZTVA 4OR9A 4DSYA 4IL1A 1W24A 3K7WC 1MF8A 1S3LA 4KBPA 3HVQA 1OI8A 1M63A 4MOYA 4F0ZA 3N5UA 3T1IA 2O8GA 4Q7FA 3RL4A 2QJCA 3QFKA 3H64A 3DSDA 4V0VA 2NYMC 2NYLC 2IAEC 5EQVA 3IB7A 4WWLA 3EGHA 1Z2WA 1T70A 4JA9A 1QFCA 3DSCA 1KBPA 4LACC 1HPUA 3GVEA 3H67A 4M0VA 1NNWA 3H63A 2JOGA 3CK2A 2CV9A 2R17A 1S8EA 4FBWA 4V0XA 4ZX2A 3KBPA 4FBKA 4ORBA 3K7VC 2HYPA 2GJUA 2Z72A 3ICFA 1S3NA 2XMOA 1S95A 5DNYA 3E7AA 1UF3A 3RL3A 3EGGA 3PSNA 2WDFA 2BQ8X 4O4KA 1TCOA 3TGHA 4TUIA 4ZVZA 4J6OA 4H1SA 4LTYA 3RQZA 4O5GA 3H60A 3IB8A 4LU9A 5B8IA 3AV0A 4H2FA 4H2IA 1FJMA 1S3MA 3AUZA 3H68A 5JJTA 2IE4C 3H69A 1S70A 3QFMA 3THNA 3V4YA 1HO5A 1T71A 1XZWA 3IVEA 4V0WA 2Z06A 1AUIA 3ZU0A 3H61A 3H62B 2A22A 2KKNA 4TUGA 1G5BA 4FBQA 4DT2A 5F3WA 2ZBMA 4O43A 3THOB 4UWQA 5IOHA 1Z2XA 2HYOA 1II7A 3PSOA 1WAO1 2DFJA
chains in the Genus database with same CATH superfamily
1IT6A 4B2OA 1U32A 4NZVA 1WARA 5HPEA 3DW8C 4UT3B 4YKEA 2YVTA 4MP0A 2P6BA 4ORCA 4H2BA 4UT3A 2BCDA 2IE3C 2WDCA 4KKZA 3QFNA 2Z1AA 2O8AA 2WDEA 2QFPA 4MOVA 3C9FA 3QFOA 1OIEA 2QFRA 3H66A 4G9JA 1SU1A 1OIDA 2AHDA 4UT2A 3FGAC 2WDDA 5JPEA 1V73A 3C5WC 4ORAA 3JYFA 1JK7A 2NPPC 4FCXA 4JA7A 5INBA 2HY1A 3QG5C 1USHA 3P71C 4I5NC 4O24A 5J28A 3LL8A 3IVDA 4H1YP 4I5LC 4H2GA 3E7BA 5GTUA 5JPFA 1QHWA 4HD0A 2Q8UA 4DHLA 4IYPC 4XPNA 1XM7A 2USHA 5C1VA 1UTEA 2BDXA 1HP1A 2NXFA 3RL5A 3ZTVA 4OR9A 4DSYA 4IL1A 1W24A 3K7WC 1MF8A 1S3LA 4KBPA 2ZOAA 3HVQA 1OI8A 1M63A 4MOYA 4F0ZA 3N5UA 3T1IA 2O8GA 4Q7FA 3RL4A 2QJCA 3QFKA 3H64A 3DSDA 4V0VA 2NYMC 2NYLC 2IAEC 5EQVA 3IB7A 4WWLA 3EGHA 1Z2WA 1T70A 4JA9A 1QFCA 3DSCA 1KBPA 4LACC 1HPUA 3GVEA 3H67A 4M0VA 1NNWA 3H63A 2JOGA 3CK2A 2CV9A 2R17A 1S8EA 4FBWA 4V0XA 4ZX2A 3KBPA 4FBKA 4ORBA 3K7VC 2HYPA 2GJUA 2Z72A 3ICFA 1S3NA 2XMOA 1S95A 5DNYA 3E7AA 3FLOA 1UF3A 2ZO9B 3RL3A 3EGGA 3PSNA 2DXLA 2WDFA 2BQ8X 4O4KA 1TCOA 3TGHA 4TUIA 2YEQA 4ZVZA 4J6OA 4H1SA 4LTYA 3RQZA 4O5GA 3H60A 3IB8A 4LU9A 3D03A 5B8IA 3AV0A 4H2FA 4H2IA 1FJMA 1S3MA 3AUZA 3H68A 5JJTA 2IE4C 3H69A 1S70A 3QFMA 3THNA 3V4YA 1HO5A 1T71A 1XZWA 3IVEA 4V0WA 2Z06A 1AUIA 3ZU0A 3H61A 3H62B 2A22A 2KKNA 4TUGA 1G5BA 4FBQA 4DT2A 3E0JA 5F3WA 2ZBMA 4O43A 3THOB 2DXNA 4UWQA 5IOHA 1Z2XA 2HYOA 1II7A 3PSOA 1WAO1 2DFJA
chains in the Genus database with same CATH topology
1IT6A 4B2OA 1U32A 4NZVA 1WARA 5HPEA 3DW8C 4UT3B 4YKEA 2YVTA 4MP0A 2P6BA 4ORCA 4H2BA 4UT3A 2BCDA 2IE3C 2WDCA 4KKZA 3QFNA 2Z1AA 2O8AA 2WDEA 2QFPA 4MOVA 3C9FA 3QFOA 1OIEA 2QFRA 3H66A 4G9JA 1SU1A 1OIDA 2AHDA 4UT2A 3FGAC 2WDDA 5JPEA 1V73A 3C5WC 4ORAA 3JYFA 1JK7A 2NPPC 4FCXA 4JA7A 5INBA 2HY1A 3QG5C 1USHA 3P71C 4I5NC 4O24A 5J28A 3LL8A 3IVDA 4H1YP 4I5LC 4H2GA 3E7BA 5GTUA 5JPFA 1QHWA 4HD0A 2Q8UA 4DHLA 4IYPC 4XPNA 1XM7A 2USHA 5C1VA 1UTEA 2BDXA 1HP1A 2NXFA 3RL5A 3ZTVA 4OR9A 4DSYA 4IL1A 1W24A 3K7WC 1MF8A 1S3LA 4KBPA 2ZOAA 3HVQA 1OI8A 1M63A 4MOYA 4F0ZA 3N5UA 3T1IA 2O8GA 4Q7FA 3RL4A 2QJCA 3QFKA 3H64A 3DSDA 4V0VA 2NYMC 2NYLC 2IAEC 5EQVA 3IB7A 4WWLA 3EGHA 1Z2WA 1T70A 4JA9A 1QFCA 3DSCA 1KBPA 4LACC 1HPUA 3GVEA 3H67A 4M0VA 1NNWA 3H63A 2JOGA 3CK2A 2CV9A 2R17A 1S8EA 4FBWA 4V0XA 4ZX2A 3KBPA 4FBKA 4ORBA 3K7VC 2HYPA 2GJUA 2Z72A 3ICFA 1S3NA 2XMOA 1S95A 5DNYA 3E7AA 3FLOA 1UF3A 2ZO9B 3RL3A 3EGGA 3PSNA 2DXLA 2WDFA 2BQ8X 4O4KA 1TCOA 3TGHA 4TUIA 2YEQA 4ZVZA 4J6OA 4H1SA 4LTYA 3RQZA 4O5GA 3H60A 3IB8A 4LU9A 3D03A 5B8IA 3AV0A 4H2FA 4H2IA 1FJMA 1S3MA 3AUZA 3H68A 5JJTA 2IE4C 3H69A 1S70A 3QFMA 3THNA 3V4YA 1HO5A 1T71A 1XZWA 3IVEA 4V0WA 2Z06A 1AUIA 3ZU0A 3H61A 3H62B 2A22A 2KKNA 4TUGA 1G5BA 4FBQA 4DT2A 3E0JA 5F3WA 2ZBMA 4O43A 3THOB 2DXNA 4UWQA 5IOHA 1Z2XA 2HYOA 1II7A 3PSOA 1WAO1 2DFJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IT6 A;  4B2O A;  1U32 A;  4NZV A;  1WAR A;  5HPE A;  3DW8 C;  4UT3 B;  4YKE A;  2YVT A;  4MP0 A;  2P6B A;  4ORC A;  4H2B A;  4UT3 A;  2BCD A;  2IE3 C;  2WDC A;  4KKZ A;  3QFN A;  2Z1A A;  2O8A A;  2WDE A;  2QFP A;  4MOV A;  3C9F A;  3QFO A;  1OIE A;  2QFR A;  3H66 A;  4G9J A;  1SU1 A;  1OID A;  2AHD A;  4UT2 A;  3FGA C;  2WDD A;  5JPE A;  1V73 A;  3C5W C;  4ORA A;  3JYF A;  1JK7 A;  2NPP C;  4FCX A;  4JA7 A;  5INB A;  2HY1 A;  3QG5 C;  1USH A;  3P71 C;  4I5N C;  4O24 A;  5J28 A;  3LL8 A;  3IVD A;  4H1Y P;  4I5L C;  4H2G A;  3E7B A;  5GTU A;  5JPF A;  1QHW A;  4HD0 A;  2Q8U A;  4DHL A;  4IYP C;  4XPN A;  1XM7 A;  2USH A;  5C1V A;  1UTE A;  2BDX A;  1HP1 A;  2NXF A;  3RL5 A;  3ZTV A;  4OR9 A;  4DSY A;  4IL1 A;  1W24 A;  3K7W C;  1MF8 A;  1S3L A;  4KBP A;  3HVQ A;  1OI8 A;  1M63 A;  4MOY A;  4F0Z A;  3N5U A;  3T1I A;  2O8G A;  4Q7F A;  3RL4 A;  2QJC A;  3QFK A;  3H64 A;  3DSD A;  4V0V A;  2NYM C;  2NYL C;  2IAE C;  5EQV A;  3IB7 A;  4WWL A;  3EGH A;  1Z2W A;  1T70 A;  4JA9 A;  1QFC A;  3DSC A;  1KBP A;  4LAC C;  1HPU A;  3GVE A;  3H67 A;  4M0V A;  1NNW A;  3H63 A;  2JOG A;  3CK2 A;  2CV9 A;  2R17 A;  1S8E A;  4FBW A;  4V0X A;  4ZX2 A;  3KBP A;  4FBK A;  4ORB A;  3K7V C;  2HYP A;  2GJU A;  2Z72 A;  3ICF A;  1S3N A;  2XMO A;  1S95 A;  5DNY A;  3E7A A;  1UF3 A;  3RL3 A;  3EGG A;  3PSN A;  2WDF A;  2BQ8 X;  4O4K A;  1TCO A;  3TGH A;  4TUI A;  4ZVZ A;  4J6O A;  4H1S A;  4LTY A;  3RQZ A;  4O5G A;  3H60 A;  3IB8 A;  4LU9 A;  5B8I A;  3AV0 A;  4H2F A;  4H2I A;  1FJM A;  1S3M A;  3AUZ A;  3H68 A;  5JJT A;  2IE4 C;  3H69 A;  1S70 A;  3QFM A;  3THN A;  3V4Y A;  1HO5 A;  1T71 A;  1XZW A;  3IVE A;  4V0W A;  2Z06 A;  1AUI A;  3ZU0 A;  3H61 A;  3H62 B;  2A22 A;  2KKN A;  4TUG A;  1G5B A;  4FBQ A;  4DT2 A;  5F3W A;  2ZBM A;  4O43 A;  3THO B;  4UWQ A;  5IOH A;  1Z2X A;  2HYO A;  1II7 A;  3PSO A;  1WAO 1;  2DFJ A; 
#chains in the Genus database with same CATH topology
 1IT6 A;  4B2O A;  1U32 A;  4NZV A;  1WAR A;  5HPE A;  3DW8 C;  4UT3 B;  4YKE A;  2YVT A;  4MP0 A;  2P6B A;  4ORC A;  4H2B A;  4UT3 A;  2BCD A;  2IE3 C;  2WDC A;  4KKZ A;  3QFN A;  2Z1A A;  2O8A A;  2WDE A;  2QFP A;  4MOV A;  3C9F A;  3QFO A;  1OIE A;  2QFR A;  3H66 A;  4G9J A;  1SU1 A;  1OID A;  2AHD A;  4UT2 A;  3FGA C;  2WDD A;  5JPE A;  1V73 A;  3C5W C;  4ORA A;  3JYF A;  1JK7 A;  2NPP C;  4FCX A;  4JA7 A;  5INB A;  2HY1 A;  3QG5 C;  1USH A;  3P71 C;  4I5N C;  4O24 A;  5J28 A;  3LL8 A;  3IVD A;  4H1Y P;  4I5L C;  4H2G A;  3E7B A;  5GTU A;  5JPF A;  1QHW A;  4HD0 A;  2Q8U A;  4DHL A;  4IYP C;  4XPN A;  1XM7 A;  2USH A;  5C1V A;  1UTE A;  2BDX A;  1HP1 A;  2NXF A;  3RL5 A;  3ZTV A;  4OR9 A;  4DSY A;  4IL1 A;  1W24 A;  3K7W C;  1MF8 A;  1S3L A;  4KBP A;  2ZOA A;  3HVQ A;  1OI8 A;  1M63 A;  4MOY A;  4F0Z A;  3N5U A;  3T1I A;  2O8G A;  4Q7F A;  3RL4 A;  2QJC A;  3QFK A;  3H64 A;  3DSD A;  4V0V A;  2NYM C;  2NYL C;  2IAE C;  5EQV A;  3IB7 A;  4WWL A;  3EGH A;  1Z2W A;  1T70 A;  4JA9 A;  1QFC A;  3DSC A;  1KBP A;  4LAC C;  1HPU A;  3GVE A;  3H67 A;  4M0V A;  1NNW A;  3H63 A;  2JOG A;  3CK2 A;  2CV9 A;  2R17 A;  1S8E A;  4FBW A;  4V0X A;  4ZX2 A;  3KBP A;  4FBK A;  4ORB A;  3K7V C;  2HYP A;  2GJU A;  2Z72 A;  3ICF A;  1S3N A;  2XMO A;  1S95 A;  5DNY A;  3E7A A;  3FLO A;  1UF3 A;  2ZO9 B;  3RL3 A;  3EGG A;  3PSN A;  2DXL A;  2WDF A;  2BQ8 X;  4O4K A;  1TCO A;  3TGH A;  4TUI A;  2YEQ A;  4ZVZ A;  4J6O A;  4H1S A;  4LTY A;  3RQZ A;  4O5G A;  3H60 A;  3IB8 A;  4LU9 A;  3D03 A;  5B8I A;  3AV0 A;  4H2F A;  4H2I A;  1FJM A;  1S3M A;  3AUZ A;  3H68 A;  5JJT A;  2IE4 C;  3H69 A;  1S70 A;  3QFM A;  3THN A;  3V4Y A;  1HO5 A;  1T71 A;  1XZW A;  3IVE A;  4V0W A;  2Z06 A;  1AUI A;  3ZU0 A;  3H61 A;  3H62 B;  2A22 A;  2KKN A;  4TUG A;  1G5B A;  4FBQ A;  4DT2 A;  3E0J A;  5F3W A;  2ZBM A;  4O43 A;  3THO B;  2DXN A;  4UWQ A;  5IOH A;  1Z2X A;  2HYO A;  1II7 A;  3PSO A;  1WAO 1;  2DFJ A; 
#chains in the Genus database with same CATH homology
 1IT6 A;  4B2O A;  1U32 A;  4NZV A;  1WAR A;  5HPE A;  3DW8 C;  4UT3 B;  4YKE A;  2YVT A;  4MP0 A;  2P6B A;  4ORC A;  4H2B A;  4UT3 A;  2BCD A;  2IE3 C;  2WDC A;  4KKZ A;  3QFN A;  2Z1A A;  2O8A A;  2WDE A;  2QFP A;  4MOV A;  3C9F A;  3QFO A;  1OIE A;  2QFR A;  3H66 A;  4G9J A;  1SU1 A;  1OID A;  2AHD A;  4UT2 A;  3FGA C;  2WDD A;  5JPE A;  1V73 A;  3C5W C;  4ORA A;  3JYF A;  1JK7 A;  2NPP C;  4FCX A;  4JA7 A;  5INB A;  2HY1 A;  3QG5 C;  1USH A;  3P71 C;  4I5N C;  4O24 A;  5J28 A;  3LL8 A;  3IVD A;  4H1Y P;  4I5L C;  4H2G A;  3E7B A;  5GTU A;  5JPF A;  1QHW A;  4HD0 A;  2Q8U A;  4DHL A;  4IYP C;  4XPN A;  1XM7 A;  2USH A;  5C1V A;  1UTE A;  2BDX A;  1HP1 A;  2NXF A;  3RL5 A;  3ZTV A;  4OR9 A;  4DSY A;  4IL1 A;  1W24 A;  3K7W C;  1MF8 A;  1S3L A;  4KBP A;  2ZOA A;  3HVQ A;  1OI8 A;  1M63 A;  4MOY A;  4F0Z A;  3N5U A;  3T1I A;  2O8G A;  4Q7F A;  3RL4 A;  2QJC A;  3QFK A;  3H64 A;  3DSD A;  4V0V A;  2NYM C;  2NYL C;  2IAE C;  5EQV A;  3IB7 A;  4WWL A;  3EGH A;  1Z2W A;  1T70 A;  4JA9 A;  1QFC A;  3DSC A;  1KBP A;  4LAC C;  1HPU A;  3GVE A;  3H67 A;  4M0V A;  1NNW A;  3H63 A;  2JOG A;  3CK2 A;  2CV9 A;  2R17 A;  1S8E A;  4FBW A;  4V0X A;  4ZX2 A;  3KBP A;  4FBK A;  4ORB A;  3K7V C;  2HYP A;  2GJU A;  2Z72 A;  3ICF A;  1S3N A;  2XMO A;  1S95 A;  5DNY A;  3E7A A;  3FLO A;  1UF3 A;  2ZO9 B;  3RL3 A;  3EGG A;  3PSN A;  2DXL A;  2WDF A;  2BQ8 X;  4O4K A;  1TCO A;  3TGH A;  4TUI A;  2YEQ A;  4ZVZ A;  4J6O A;  4H1S A;  4LTY A;  3RQZ A;  4O5G A;  3H60 A;  3IB8 A;  4LU9 A;  3D03 A;  5B8I A;  3AV0 A;  4H2F A;  4H2I A;  1FJM A;  1S3M A;  3AUZ A;  3H68 A;  5JJT A;  2IE4 C;  3H69 A;  1S70 A;  3QFM A;  3THN A;  3V4Y A;  1HO5 A;  1T71 A;  1XZW A;  3IVE A;  4V0W A;  2Z06 A;  1AUI A;  3ZU0 A;  3H61 A;  3H62 B;  2A22 A;  2KKN A;  4TUG A;  1G5B A;  4FBQ A;  4DT2 A;  3E0J A;  5F3W A;  2ZBM A;  4O43 A;  3THO B;  2DXN A;  4UWQ A;  5IOH A;  1Z2X A;  2HYO A;  1II7 A;  3PSO A;  1WAO 1;  2DFJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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