2WDDA

Termus thermophilus sulfate thiohydrolase soxb in complex with sulfate
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
543
structure length
542
Chain Sequence
LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Thermus thermophilus
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 190
structure length 542
sequence length 543
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wddA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wddA03
2QFPA 3N5UA 4FCXA 3H67A 1AUIA 1QFCA 1S3MA 1S3LA 2NXFA 2NPPC 4I5NC 1U32A 3RL3A 1HP1A 5GTUA 4FBQA 3E7AA 3ICFA 2AHDA 3FGAC 4H1SA 4V0VA 3V4YA 5C1VA 4UT3B 2WDFA 4HD0A 4Q7FA 2QJCA 2NYMC 4O24A 3QG5C 4MP0A 2HY1A 3H60A 4ORAA 3IB7A 4G9JA 5J28A 4O5GA 4IYPC 2WDCA 3C9FA 3AUZA 1JK7A 2Q8UA 1UTEA 4UT3A 4WWLA 1NNWA 4I5LC 4LU9A 1IT6A 3EGHA 5B8IA 3PSOA 2QFRA 1QHWA 3THOB 1XZWA 5F3WA 3DSDA 5INBA 3EGGA 4UT2A 3E7BA 4KBPA 2IE4C 4H2BA 1HPUA 4ORBA 3GVEA 4V0WA 4UWQA 1Z2WA 4DT2A 1OI8A 4JA9A 2O8AA 3C5WC 4DHLA 2GJUA 3TGHA 1S70A 3AV0A 3QFOA 3THNA 5EQVA 4LACC 2IAEC 1FJMA 1M63A 1XM7A 4IL1A 3ZTVA 3IVEA 2WDDA 2P6BA 4H2IA 4JA7A 5JPEA 4ORCA 2BCDA 4H2GA 1OIEA 4H2FA 1MF8A 4MOYA 1S95A 5IOHA 3DW8C 2Z06A 1SU1A 2Z1AA 2KKNA 3JYFA 3K7WC 4H1YP 3H63A 3IB8A 3T1IA 1W24A 2YVTA 3H66A 3PSNA 4O4KA 1Z2XA 2DFJA 3H68A 3IVDA 3QFKA 4TUIA 4TUGA 1II7A 3H62B 4V0XA 1WARA 1T70A 3H64A 2R17A 1S3NA 3H61A 3H69A 4MOVA 4ZVZA 4ZX2A 3RQZA 3RL4A 3K7VC 3LL8A 1HO5A 2NYLC 2BDXA 5DNYA 3HVQA 2WDEA 3QFNA 1TCOA 4FBKA 3CK2A 4XPNA 2JOGA 3QFMA 2CV9A 2HYOA 1OIDA 2HYPA 4B2OA 5JPFA 4O43A 2A22A 4OR9A 3DSCA 2Z72A 5JJTA 2IE3C 4YKEA 1T71A 3P71C 5HPEA 4J6OA 3KBPA 2BQ8X 4FBWA 4M0VA 1G5BA 1S8EA 4NZVA 2XMOA 1UF3A 3RL5A 4KKZA 1USHA 1V73A 4DSYA 4LTYA 1KBPA 2USHA 2O8GA 3ZU0A 2ZBMA 4F0ZA 1WAO1
chains in the Genus database with same CATH superfamily
2QFPA 2DXLA 3N5UA 4FCXA 3H67A 1AUIA 2YEQA 1QFCA 1S3MA 1S3LA 2NXFA 2NPPC 4I5NC 1U32A 3RL3A 1HP1A 5GTUA 4FBQA 3E7AA 3ICFA 3E0JA 2AHDA 3FGAC 4H1SA 4V0VA 3V4YA 5C1VA 4UT3B 2WDFA 4HD0A 4Q7FA 2QJCA 2NYMC 4O24A 3QG5C 2ZOAA 2HY1A 3H60A 4MP0A 4ORAA 3IB7A 4G9JA 5J28A 4O5GA 4IYPC 2WDCA 3C9FA 3AUZA 1JK7A 2Q8UA 3D03A 1UTEA 4UT3A 4WWLA 1NNWA 4I5LC 4LU9A 1IT6A 3EGHA 5B8IA 3PSOA 2QFRA 1QHWA 3THOB 1XZWA 5F3WA 3DSDA 5INBA 3EGGA 4UT2A 3E7BA 4KBPA 2IE4C 4H2BA 1HPUA 4ORBA 3GVEA 4V0WA 4UWQA 1Z2WA 4DT2A 1OI8A 4JA9A 2O8AA 3C5WC 4DHLA 2GJUA 3TGHA 1S70A 3AV0A 3QFOA 3THNA 5EQVA 4LACC 2IAEC 1FJMA 1M63A 1XM7A 4IL1A 3ZTVA 3IVEA 2WDDA 2P6BA 4H2IA 4JA7A 5JPEA 4ORCA 2BCDA 4H2GA 1OIEA 4H2FA 1MF8A 4MOYA 1S95A 5IOHA 3DW8C 2Z06A 1SU1A 2Z1AA 2KKNA 3JYFA 3K7WC 4H1YP 3H63A 3IB8A 3T1IA 1W24A 2YVTA 3H66A 3PSNA 4O4KA 1Z2XA 2DXNA 2DFJA 3H68A 3IVDA 3QFKA 4TUIA 4TUGA 1II7A 3H62B 4V0XA 1WARA 1T70A 3H64A 2R17A 1S3NA 3H61A 3H69A 4MOVA 4ZVZA 4ZX2A 3RQZA 3RL4A 3K7VC 3LL8A 1HO5A 2NYLC 2BDXA 5DNYA 3HVQA 2WDEA 3QFNA 1TCOA 4FBKA 3CK2A 4XPNA 3FLOA 2JOGA 3QFMA 2CV9A 2HYOA 1OIDA 2HYPA 4B2OA 5JPFA 4O43A 2A22A 2ZO9B 4OR9A 3DSCA 2Z72A 5JJTA 2IE3C 4YKEA 1T71A 3P71C 5HPEA 4J6OA 3KBPA 2BQ8X 4FBWA 4M0VA 1G5BA 1S8EA 4NZVA 2XMOA 1UF3A 3RL5A 4KKZA 1USHA 1V73A 4DSYA 4LTYA 1KBPA 2USHA 2O8GA 3ZU0A 2ZBMA 4F0ZA 1WAO1
chains in the Genus database with same CATH topology
2QFPA 2DXLA 3N5UA 4FCXA 3H67A 1AUIA 2YEQA 1QFCA 1S3MA 1S3LA 2NXFA 2NPPC 4I5NC 1U32A 3RL3A 1HP1A 5GTUA 4FBQA 3E7AA 3ICFA 3E0JA 2AHDA 3FGAC 4H1SA 4V0VA 3V4YA 5C1VA 4UT3B 2WDFA 4HD0A 4Q7FA 2QJCA 2NYMC 4O24A 3QG5C 2ZOAA 2HY1A 3H60A 4MP0A 4ORAA 3IB7A 4G9JA 5J28A 4O5GA 4IYPC 2WDCA 3C9FA 3AUZA 1JK7A 2Q8UA 3D03A 1UTEA 4UT3A 4WWLA 1NNWA 4I5LC 4LU9A 1IT6A 3EGHA 5B8IA 3PSOA 2QFRA 1QHWA 3THOB 1XZWA 5F3WA 3DSDA 5INBA 3EGGA 4UT2A 3E7BA 4KBPA 2IE4C 4H2BA 1HPUA 4ORBA 3GVEA 4V0WA 4UWQA 1Z2WA 4DT2A 1OI8A 4JA9A 2O8AA 3C5WC 4DHLA 2GJUA 3TGHA 1S70A 3AV0A 3QFOA 3THNA 5EQVA 4LACC 2IAEC 1FJMA 1M63A 1XM7A 4IL1A 3ZTVA 3IVEA 2WDDA 2P6BA 4H2IA 4JA7A 5JPEA 4ORCA 2BCDA 4H2GA 1OIEA 4H2FA 1MF8A 4MOYA 1S95A 5IOHA 3DW8C 2Z06A 1SU1A 2Z1AA 2KKNA 3JYFA 3K7WC 4H1YP 3H63A 3IB8A 3T1IA 1W24A 2YVTA 3H66A 3PSNA 4O4KA 1Z2XA 2DXNA 2DFJA 3H68A 3IVDA 3QFKA 4TUIA 4TUGA 1II7A 3H62B 4V0XA 1WARA 1T70A 3H64A 2R17A 1S3NA 3H61A 3H69A 4MOVA 4ZVZA 4ZX2A 3RQZA 3RL4A 3K7VC 3LL8A 1HO5A 2NYLC 2BDXA 5DNYA 3HVQA 2WDEA 3QFNA 1TCOA 4FBKA 3CK2A 4XPNA 3FLOA 2JOGA 3QFMA 2CV9A 2HYOA 1OIDA 2HYPA 4B2OA 5JPFA 4O43A 2A22A 2ZO9B 4OR9A 3DSCA 2Z72A 5JJTA 2IE3C 4YKEA 1T71A 3P71C 5HPEA 4J6OA 3KBPA 2BQ8X 4FBWA 4M0VA 1G5BA 1S8EA 4NZVA 2XMOA 1UF3A 3RL5A 4KKZA 1USHA 1V73A 4DSYA 4LTYA 1KBPA 2USHA 2O8GA 3ZU0A 2ZBMA 4F0ZA 1WAO1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFP A;  3N5U A;  4FCX A;  3H67 A;  1AUI A;  1QFC A;  1S3M A;  1S3L A;  2NXF A;  2NPP C;  4I5N C;  1U32 A;  3RL3 A;  1HP1 A;  5GTU A;  4FBQ A;  3E7A A;  3ICF A;  2AHD A;  3FGA C;  4H1S A;  4V0V A;  3V4Y A;  5C1V A;  4UT3 B;  2WDF A;  4HD0 A;  4Q7F A;  2QJC A;  2NYM C;  4O24 A;  3QG5 C;  4MP0 A;  2HY1 A;  3H60 A;  4ORA A;  3IB7 A;  4G9J A;  5J28 A;  4O5G A;  4IYP C;  2WDC A;  3C9F A;  3AUZ A;  1JK7 A;  2Q8U A;  1UTE A;  4UT3 A;  4WWL A;  1NNW A;  4I5L C;  4LU9 A;  1IT6 A;  3EGH A;  5B8I A;  3PSO A;  2QFR A;  1QHW A;  3THO B;  1XZW A;  5F3W A;  3DSD A;  5INB A;  3EGG A;  4UT2 A;  3E7B A;  4KBP A;  2IE4 C;  4H2B A;  1HPU A;  4ORB A;  3GVE A;  4V0W A;  4UWQ A;  1Z2W A;  4DT2 A;  1OI8 A;  4JA9 A;  2O8A A;  3C5W C;  4DHL A;  2GJU A;  3TGH A;  1S70 A;  3AV0 A;  3QFO A;  3THN A;  5EQV A;  4LAC C;  2IAE C;  1FJM A;  1M63 A;  1XM7 A;  4IL1 A;  3ZTV A;  3IVE A;  2WDD A;  2P6B A;  4H2I A;  4JA7 A;  5JPE A;  4ORC A;  2BCD A;  4H2G A;  1OIE A;  4H2F A;  1MF8 A;  4MOY A;  1S95 A;  5IOH A;  3DW8 C;  2Z06 A;  1SU1 A;  2Z1A A;  2KKN A;  3JYF A;  3K7W C;  4H1Y P;  3H63 A;  3IB8 A;  3T1I A;  1W24 A;  2YVT A;  3H66 A;  3PSN A;  4O4K A;  1Z2X A;  2DFJ A;  3H68 A;  3IVD A;  3QFK A;  4TUI A;  4TUG A;  1II7 A;  3H62 B;  4V0X A;  1WAR A;  1T70 A;  3H64 A;  2R17 A;  1S3N A;  3H61 A;  3H69 A;  4MOV A;  4ZVZ A;  4ZX2 A;  3RQZ A;  3RL4 A;  3K7V C;  3LL8 A;  1HO5 A;  2NYL C;  2BDX A;  5DNY A;  3HVQ A;  2WDE A;  3QFN A;  1TCO A;  4FBK A;  3CK2 A;  4XPN A;  2JOG A;  3QFM A;  2CV9 A;  2HYO A;  1OID A;  2HYP A;  4B2O A;  5JPF A;  4O43 A;  2A22 A;  4OR9 A;  3DSC A;  2Z72 A;  5JJT A;  2IE3 C;  4YKE A;  1T71 A;  3P71 C;  5HPE A;  4J6O A;  3KBP A;  2BQ8 X;  4FBW A;  4M0V A;  1G5B A;  1S8E A;  4NZV A;  2XMO A;  1UF3 A;  3RL5 A;  4KKZ A;  1USH A;  1V73 A;  4DSY A;  4LTY A;  1KBP A;  2USH A;  2O8G A;  3ZU0 A;  2ZBM A;  4F0Z A;  1WAO 1; 
#chains in the Genus database with same CATH topology
 2QFP A;  2DXL A;  3N5U A;  4FCX A;  3H67 A;  1AUI A;  2YEQ A;  1QFC A;  1S3M A;  1S3L A;  2NXF A;  2NPP C;  4I5N C;  1U32 A;  3RL3 A;  1HP1 A;  5GTU A;  4FBQ A;  3E7A A;  3ICF A;  3E0J A;  2AHD A;  3FGA C;  4H1S A;  4V0V A;  3V4Y A;  5C1V A;  4UT3 B;  2WDF A;  4HD0 A;  4Q7F A;  2QJC A;  2NYM C;  4O24 A;  3QG5 C;  2ZOA A;  2HY1 A;  3H60 A;  4MP0 A;  4ORA A;  3IB7 A;  4G9J A;  5J28 A;  4O5G A;  4IYP C;  2WDC A;  3C9F A;  3AUZ A;  1JK7 A;  2Q8U A;  3D03 A;  1UTE A;  4UT3 A;  4WWL A;  1NNW A;  4I5L C;  4LU9 A;  1IT6 A;  3EGH A;  5B8I A;  3PSO A;  2QFR A;  1QHW A;  3THO B;  1XZW A;  5F3W A;  3DSD A;  5INB A;  3EGG A;  4UT2 A;  3E7B A;  4KBP A;  2IE4 C;  4H2B A;  1HPU A;  4ORB A;  3GVE A;  4V0W A;  4UWQ A;  1Z2W A;  4DT2 A;  1OI8 A;  4JA9 A;  2O8A A;  3C5W C;  4DHL A;  2GJU A;  3TGH A;  1S70 A;  3AV0 A;  3QFO A;  3THN A;  5EQV A;  4LAC C;  2IAE C;  1FJM A;  1M63 A;  1XM7 A;  4IL1 A;  3ZTV A;  3IVE A;  2WDD A;  2P6B A;  4H2I A;  4JA7 A;  5JPE A;  4ORC A;  2BCD A;  4H2G A;  1OIE A;  4H2F A;  1MF8 A;  4MOY A;  1S95 A;  5IOH A;  3DW8 C;  2Z06 A;  1SU1 A;  2Z1A A;  2KKN A;  3JYF A;  3K7W C;  4H1Y P;  3H63 A;  3IB8 A;  3T1I A;  1W24 A;  2YVT A;  3H66 A;  3PSN A;  4O4K A;  1Z2X A;  2DXN A;  2DFJ A;  3H68 A;  3IVD A;  3QFK A;  4TUI A;  4TUG A;  1II7 A;  3H62 B;  4V0X A;  1WAR A;  1T70 A;  3H64 A;  2R17 A;  1S3N A;  3H61 A;  3H69 A;  4MOV A;  4ZVZ A;  4ZX2 A;  3RQZ A;  3RL4 A;  3K7V C;  3LL8 A;  1HO5 A;  2NYL C;  2BDX A;  5DNY A;  3HVQ A;  2WDE A;  3QFN A;  1TCO A;  4FBK A;  3CK2 A;  4XPN A;  3FLO A;  2JOG A;  3QFM A;  2CV9 A;  2HYO A;  1OID A;  2HYP A;  4B2O A;  5JPF A;  4O43 A;  2A22 A;  2ZO9 B;  4OR9 A;  3DSC A;  2Z72 A;  5JJT A;  2IE3 C;  4YKE A;  1T71 A;  3P71 C;  5HPE A;  4J6O A;  3KBP A;  2BQ8 X;  4FBW A;  4M0V A;  1G5B A;  1S8E A;  4NZV A;  2XMO A;  1UF3 A;  3RL5 A;  4KKZ A;  1USH A;  1V73 A;  4DSY A;  4LTY A;  1KBP A;  2USH A;  2O8G A;  3ZU0 A;  2ZBM A;  4F0Z A;  1WAO 1; 
#chains in the Genus database with same CATH homology
 2QFP A;  2DXL A;  3N5U A;  4FCX A;  3H67 A;  1AUI A;  2YEQ A;  1QFC A;  1S3M A;  1S3L A;  2NXF A;  2NPP C;  4I5N C;  1U32 A;  3RL3 A;  1HP1 A;  5GTU A;  4FBQ A;  3E7A A;  3ICF A;  3E0J A;  2AHD A;  3FGA C;  4H1S A;  4V0V A;  3V4Y A;  5C1V A;  4UT3 B;  2WDF A;  4HD0 A;  4Q7F A;  2QJC A;  2NYM C;  4O24 A;  3QG5 C;  2ZOA A;  2HY1 A;  3H60 A;  4MP0 A;  4ORA A;  3IB7 A;  4G9J A;  5J28 A;  4O5G A;  4IYP C;  2WDC A;  3C9F A;  3AUZ A;  1JK7 A;  2Q8U A;  3D03 A;  1UTE A;  4UT3 A;  4WWL A;  1NNW A;  4I5L C;  4LU9 A;  1IT6 A;  3EGH A;  5B8I A;  3PSO A;  2QFR A;  1QHW A;  3THO B;  1XZW A;  5F3W A;  3DSD A;  5INB A;  3EGG A;  4UT2 A;  3E7B A;  4KBP A;  2IE4 C;  4H2B A;  1HPU A;  4ORB A;  3GVE A;  4V0W A;  4UWQ A;  1Z2W A;  4DT2 A;  1OI8 A;  4JA9 A;  2O8A A;  3C5W C;  4DHL A;  2GJU A;  3TGH A;  1S70 A;  3AV0 A;  3QFO A;  3THN A;  5EQV A;  4LAC C;  2IAE C;  1FJM A;  1M63 A;  1XM7 A;  4IL1 A;  3ZTV A;  3IVE A;  2WDD A;  2P6B A;  4H2I A;  4JA7 A;  5JPE A;  4ORC A;  2BCD A;  4H2G A;  1OIE A;  4H2F A;  1MF8 A;  4MOY A;  1S95 A;  5IOH A;  3DW8 C;  2Z06 A;  1SU1 A;  2Z1A A;  2KKN A;  3JYF A;  3K7W C;  4H1Y P;  3H63 A;  3IB8 A;  3T1I A;  1W24 A;  2YVT A;  3H66 A;  3PSN A;  4O4K A;  1Z2X A;  2DXN A;  2DFJ A;  3H68 A;  3IVD A;  3QFK A;  4TUI A;  4TUG A;  1II7 A;  3H62 B;  4V0X A;  1WAR A;  1T70 A;  3H64 A;  2R17 A;  1S3N A;  3H61 A;  3H69 A;  4MOV A;  4ZVZ A;  4ZX2 A;  3RQZ A;  3RL4 A;  3K7V C;  3LL8 A;  1HO5 A;  2NYL C;  2BDX A;  5DNY A;  3HVQ A;  2WDE A;  3QFN A;  1TCO A;  4FBK A;  3CK2 A;  4XPN A;  3FLO A;  2JOG A;  3QFM A;  2CV9 A;  2HYO A;  1OID A;  2HYP A;  4B2O A;  5JPF A;  4O43 A;  2A22 A;  2ZO9 B;  4OR9 A;  3DSC A;  2Z72 A;  5JJT A;  2IE3 C;  4YKE A;  1T71 A;  3P71 C;  5HPE A;  4J6O A;  3KBP A;  2BQ8 X;  4FBW A;  4M0V A;  1G5B A;  1S8E A;  4NZV A;  2XMO A;  1UF3 A;  3RL5 A;  4KKZ A;  1USH A;  1V73 A;  4DSY A;  4LTY A;  1KBP A;  2USH A;  2O8G A;  3ZU0 A;  2ZBM A;  4F0Z A;  1WAO 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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