2WDDA

Termus thermophilus sulfate thiohydrolase soxb in complex with sulfate
Total Genus 190
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
543
structure length
542
Chain Sequence
LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 190
structure length 542
sequence length 543
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wddA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wddA03
4YKEA 5JJTA 1OIDA 4J6OA 3T1IA 2NXFA 1S70A 2O8GA 1QFCA 1QHWA 3KBPA 3IVEA 1S3LA 1HPUA 4F0ZA 5F3WA 3AUZA 2IAEC 4LTYA 3H62B 1AUIA 4G9JA 4KBPA 3H66A 1WAO1 4DT2A 4KKZA 3E7AA 3JYFA 3QG5C 1W24A 4ZVZA 5J28A 4TUIA 4I5LC 4O43A 4O4KA 2R17A 1SU1A 4H2GA 3N5UA 1V73A 2HYPA 3RL4A 2Z72A 2IE3C 3EGGA 1S3MA 3FGAC 4I5NC 2A22A 4ZX2A 4UT3B 2O8AA 1NNWA 3ICFA 3RQZA 4FBKA 4Q7FA 3QFKA 3C9FA 2USHA 4MOVA 1USHA 4H1SA 4ORAA 5B8IA 2Z06A 5C1VA 2HY1A 4IYPC 5INBA 4ORBA 5JPFA 3LL8A 1TCOA 3IVDA 5HPEA 4MP0A 1Z2WA 2CV9A 4UT2A 3E7BA 3C5WC 2Q8UA 2XMOA 1S8EA 5IOHA 4JA7A 1S3NA 3ZTVA 3DSCA 2P6BA 2BQ8X 4LACC 1KBPA 2WDFA 2GJUA 2WDEA 3DW8C 4V0VA 4B2OA 3H69A 4ORCA 3QFMA 5JPEA 3H60A 2NYLC 1S95A 3CK2A 3QFOA 4O5GA 4UT3A 4LU9A 2NPPC 3QFNA 3IB8A 4O24A 2AHDA 2QJCA 4NZVA 1U32A 1T70A 2JOGA 4FBWA 1M63A 1JK7A 1G5BA 3V4YA 1OI8A 1T71A 2BDXA 2DFJA 4IL1A 1UTEA 4H2BA 2QFPA 3H61A 3ZU0A 5DNYA 3K7WC 2WDDA 4TUGA 2QFRA 2WDCA 1HO5A 4WWLA 2HYOA 4H2IA 3AV0A 1Z2XA 3H63A 1FJMA 3H68A 4V0XA 3THOB 3HVQA 4FCXA 4H2FA 4OR9A 4JA9A 1WARA 2NYMC 2BCDA 1MF8A 1II7A 4FBQA 1HP1A 3RL5A 4MOYA 2Z1AA 4XPNA 4DSYA 3PSOA 2KKNA 3EGHA 3THNA 3RL3A 3H67A 5EQVA 1IT6A 2ZBMA 3IB7A 3K7VC 2YVTA 3GVEA 4DHLA 4H1YP 4V0WA 1UF3A 2IE4C 3TGHA 3DSDA 1XM7A 3PSNA 4HD0A 4UWQA 3H64A 4M0VA 5GTUA 1OIEA 1XZWA 3P71C
chains in the Genus database with same CATH superfamily
4YKEA 3E0JA 1OIDA 4J6OA 3T1IA 5JJTA 2NXFA 1S70A 2O8GA 1QFCA 1QHWA 3KBPA 3IVEA 1S3LA 1HPUA 4F0ZA 5F3WA 3AUZA 2IAEC 4LTYA 3H62B 1AUIA 4G9JA 4KBPA 3H66A 1WAO1 4DT2A 4KKZA 3E7AA 3JYFA 3QG5C 1W24A 4ZVZA 5J28A 4TUIA 4I5LC 4O43A 4O4KA 2R17A 1SU1A 4H2GA 3N5UA 1V73A 2HYPA 3RL4A 2Z72A 2IE3C 3EGGA 1S3MA 3FGAC 4I5NC 2A22A 4ZX2A 4UT3B 2O8AA 1NNWA 3ICFA 3RQZA 4FBKA 4Q7FA 3QFKA 3C9FA 2USHA 4MOVA 1USHA 4H1SA 4ORAA 5B8IA 2Z06A 5C1VA 2HY1A 4IYPC 5INBA 2DXNA 4ORBA 5JPFA 3D03A 3LL8A 1TCOA 3IVDA 5HPEA 4MP0A 1Z2WA 2CV9A 2DXLA 4UT2A 3E7BA 3C5WC 2Q8UA 2XMOA 1S8EA 5IOHA 4JA7A 1S3NA 3ZTVA 3DSCA 2P6BA 2BQ8X 4LACC 1KBPA 2WDFA 2GJUA 2WDEA 3DW8C 4V0VA 4B2OA 3H69A 4ORCA 3QFMA 5JPEA 3H60A 2NYLC 1S95A 3CK2A 3QFOA 4O5GA 4UT3A 4LU9A 2NPPC 3QFNA 3IB8A 4O24A 2AHDA 2QJCA 4NZVA 1U32A 1T70A 2JOGA 4FBWA 1M63A 1JK7A 1G5BA 3V4YA 1OI8A 1T71A 2BDXA 2DFJA 4IL1A 1UTEA 4H2BA 2QFPA 3H61A 3ZU0A 5DNYA 3K7WC 2WDDA 4TUGA 2QFRA 2WDCA 1HO5A 4WWLA 2HYOA 4H2IA 2ZOAA 3AV0A 1Z2XA 3H63A 1FJMA 3H68A 4V0XA 3THOB 3HVQA 4FCXA 4H2FA 4OR9A 4JA9A 1WARA 2NYMC 2BCDA 1MF8A 1II7A 4FBQA 1HP1A 3RL5A 4MOYA 2Z1AA 4XPNA 4DSYA 2YEQA 3PSOA 2KKNA 3EGHA 3THNA 3RL3A 2ZO9B 3FLOA 3H67A 5EQVA 1IT6A 2ZBMA 3IB7A 3K7VC 2YVTA 3GVEA 4DHLA 4H1YP 4V0WA 1UF3A 2IE4C 3TGHA 3DSDA 1XM7A 3PSNA 4HD0A 4UWQA 3H64A 4M0VA 5GTUA 1OIEA 1XZWA 3P71C
chains in the Genus database with same CATH topology
4YKEA 3E0JA 1OIDA 4J6OA 3T1IA 5JJTA 2NXFA 1S70A 2O8GA 1QFCA 1QHWA 3KBPA 3IVEA 1S3LA 1HPUA 4F0ZA 5F3WA 3AUZA 2IAEC 4LTYA 3H62B 1AUIA 4G9JA 4KBPA 3H66A 1WAO1 4DT2A 4KKZA 3E7AA 3JYFA 3QG5C 1W24A 4ZVZA 5J28A 4TUIA 4I5LC 4O43A 4O4KA 2R17A 1SU1A 4H2GA 3N5UA 1V73A 2HYPA 3RL4A 2Z72A 2IE3C 3EGGA 1S3MA 3FGAC 4I5NC 2A22A 4ZX2A 4UT3B 2O8AA 1NNWA 3ICFA 3RQZA 4FBKA 4Q7FA 3QFKA 3C9FA 2USHA 4MOVA 1USHA 4H1SA 4ORAA 5B8IA 2Z06A 5C1VA 2HY1A 4IYPC 5INBA 2DXNA 4ORBA 5JPFA 3D03A 3LL8A 1TCOA 3IVDA 5HPEA 4MP0A 1Z2WA 2CV9A 2DXLA 4UT2A 3E7BA 3C5WC 2Q8UA 2XMOA 1S8EA 5IOHA 4JA7A 1S3NA 3ZTVA 3DSCA 2P6BA 2BQ8X 4LACC 1KBPA 2WDFA 2GJUA 2WDEA 3DW8C 4V0VA 4B2OA 3H69A 4ORCA 3QFMA 5JPEA 3H60A 2NYLC 1S95A 3CK2A 3QFOA 4O5GA 4UT3A 4LU9A 2NPPC 3QFNA 3IB8A 4O24A 2AHDA 2QJCA 4NZVA 1U32A 1T70A 2JOGA 4FBWA 1M63A 1JK7A 1G5BA 3V4YA 1OI8A 1T71A 2BDXA 2DFJA 4IL1A 1UTEA 4H2BA 2QFPA 3H61A 3ZU0A 5DNYA 3K7WC 2WDDA 4TUGA 2QFRA 2WDCA 1HO5A 4WWLA 2HYOA 4H2IA 2ZOAA 3AV0A 1Z2XA 3H63A 1FJMA 3H68A 4V0XA 3THOB 3HVQA 4FCXA 4H2FA 4OR9A 4JA9A 1WARA 2NYMC 2BCDA 1MF8A 1II7A 4FBQA 1HP1A 3RL5A 4MOYA 2Z1AA 4XPNA 4DSYA 2YEQA 3PSOA 2KKNA 3EGHA 3THNA 3RL3A 2ZO9B 3FLOA 3H67A 5EQVA 1IT6A 2ZBMA 3IB7A 3K7VC 2YVTA 3GVEA 4DHLA 4H1YP 4V0WA 1UF3A 2IE4C 3TGHA 3DSDA 1XM7A 3PSNA 4HD0A 4UWQA 3H64A 4M0VA 5GTUA 1OIEA 1XZWA 3P71C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YKE A;  5JJT A;  1OID A;  4J6O A;  3T1I A;  2NXF A;  1S70 A;  2O8G A;  1QFC A;  1QHW A;  3KBP A;  3IVE A;  1S3L A;  1HPU A;  4F0Z A;  5F3W A;  3AUZ A;  2IAE C;  4LTY A;  3H62 B;  1AUI A;  4G9J A;  4KBP A;  3H66 A;  1WAO 1;  4DT2 A;  4KKZ A;  3E7A A;  3JYF A;  3QG5 C;  1W24 A;  4ZVZ A;  5J28 A;  4TUI A;  4I5L C;  4O43 A;  4O4K A;  2R17 A;  1SU1 A;  4H2G A;  3N5U A;  1V73 A;  2HYP A;  3RL4 A;  2Z72 A;  2IE3 C;  3EGG A;  1S3M A;  3FGA C;  4I5N C;  2A22 A;  4ZX2 A;  4UT3 B;  2O8A A;  1NNW A;  3ICF A;  3RQZ A;  4FBK A;  4Q7F A;  3QFK A;  3C9F A;  2USH A;  4MOV A;  1USH A;  4H1S A;  4ORA A;  5B8I A;  2Z06 A;  5C1V A;  2HY1 A;  4IYP C;  5INB A;  4ORB A;  5JPF A;  3LL8 A;  1TCO A;  3IVD A;  5HPE A;  4MP0 A;  1Z2W A;  2CV9 A;  4UT2 A;  3E7B A;  3C5W C;  2Q8U A;  2XMO A;  1S8E A;  5IOH A;  4JA7 A;  1S3N A;  3ZTV A;  3DSC A;  2P6B A;  2BQ8 X;  4LAC C;  1KBP A;  2WDF A;  2GJU A;  2WDE A;  3DW8 C;  4V0V A;  4B2O A;  3H69 A;  4ORC A;  3QFM A;  5JPE A;  3H60 A;  2NYL C;  1S95 A;  3CK2 A;  3QFO A;  4O5G A;  4UT3 A;  4LU9 A;  2NPP C;  3QFN A;  3IB8 A;  4O24 A;  2AHD A;  2QJC A;  4NZV A;  1U32 A;  1T70 A;  2JOG A;  4FBW A;  1M63 A;  1JK7 A;  1G5B A;  3V4Y A;  1OI8 A;  1T71 A;  2BDX A;  2DFJ A;  4IL1 A;  1UTE A;  4H2B A;  2QFP A;  3H61 A;  3ZU0 A;  5DNY A;  3K7W C;  2WDD A;  4TUG A;  2QFR A;  2WDC A;  1HO5 A;  4WWL A;  2HYO A;  4H2I A;  3AV0 A;  1Z2X A;  3H63 A;  1FJM A;  3H68 A;  4V0X A;  3THO B;  3HVQ A;  4FCX A;  4H2F A;  4OR9 A;  4JA9 A;  1WAR A;  2NYM C;  2BCD A;  1MF8 A;  1II7 A;  4FBQ A;  1HP1 A;  3RL5 A;  4MOY A;  2Z1A A;  4XPN A;  4DSY A;  3PSO A;  2KKN A;  3EGH A;  3THN A;  3RL3 A;  3H67 A;  5EQV A;  1IT6 A;  2ZBM A;  3IB7 A;  3K7V C;  2YVT A;  3GVE A;  4DHL A;  4H1Y P;  4V0W A;  1UF3 A;  2IE4 C;  3TGH A;  3DSD A;  1XM7 A;  3PSN A;  4HD0 A;  4UWQ A;  3H64 A;  4M0V A;  5GTU A;  1OIE A;  1XZW A;  3P71 C; 
#chains in the Genus database with same CATH topology
 4YKE A;  3E0J A;  1OID A;  4J6O A;  3T1I A;  5JJT A;  2NXF A;  1S70 A;  2O8G A;  1QFC A;  1QHW A;  3KBP A;  3IVE A;  1S3L A;  1HPU A;  4F0Z A;  5F3W A;  3AUZ A;  2IAE C;  4LTY A;  3H62 B;  1AUI A;  4G9J A;  4KBP A;  3H66 A;  1WAO 1;  4DT2 A;  4KKZ A;  3E7A A;  3JYF A;  3QG5 C;  1W24 A;  4ZVZ A;  5J28 A;  4TUI A;  4I5L C;  4O43 A;  4O4K A;  2R17 A;  1SU1 A;  4H2G A;  3N5U A;  1V73 A;  2HYP A;  3RL4 A;  2Z72 A;  2IE3 C;  3EGG A;  1S3M A;  3FGA C;  4I5N C;  2A22 A;  4ZX2 A;  4UT3 B;  2O8A A;  1NNW A;  3ICF A;  3RQZ A;  4FBK A;  4Q7F A;  3QFK A;  3C9F A;  2USH A;  4MOV A;  1USH A;  4H1S A;  4ORA A;  5B8I A;  2Z06 A;  5C1V A;  2HY1 A;  4IYP C;  5INB A;  2DXN A;  4ORB A;  5JPF A;  3D03 A;  3LL8 A;  1TCO A;  3IVD A;  5HPE A;  4MP0 A;  1Z2W A;  2CV9 A;  2DXL A;  4UT2 A;  3E7B A;  3C5W C;  2Q8U A;  2XMO A;  1S8E A;  5IOH A;  4JA7 A;  1S3N A;  3ZTV A;  3DSC A;  2P6B A;  2BQ8 X;  4LAC C;  1KBP A;  2WDF A;  2GJU A;  2WDE A;  3DW8 C;  4V0V A;  4B2O A;  3H69 A;  4ORC A;  3QFM A;  5JPE A;  3H60 A;  2NYL C;  1S95 A;  3CK2 A;  3QFO A;  4O5G A;  4UT3 A;  4LU9 A;  2NPP C;  3QFN A;  3IB8 A;  4O24 A;  2AHD A;  2QJC A;  4NZV A;  1U32 A;  1T70 A;  2JOG A;  4FBW A;  1M63 A;  1JK7 A;  1G5B A;  3V4Y A;  1OI8 A;  1T71 A;  2BDX A;  2DFJ A;  4IL1 A;  1UTE A;  4H2B A;  2QFP A;  3H61 A;  3ZU0 A;  5DNY A;  3K7W C;  2WDD A;  4TUG A;  2QFR A;  2WDC A;  1HO5 A;  4WWL A;  2HYO A;  4H2I A;  2ZOA A;  3AV0 A;  1Z2X A;  3H63 A;  1FJM A;  3H68 A;  4V0X A;  3THO B;  3HVQ A;  4FCX A;  4H2F A;  4OR9 A;  4JA9 A;  1WAR A;  2NYM C;  2BCD A;  1MF8 A;  1II7 A;  4FBQ A;  1HP1 A;  3RL5 A;  4MOY A;  2Z1A A;  4XPN A;  4DSY A;  2YEQ A;  3PSO A;  2KKN A;  3EGH A;  3THN A;  3RL3 A;  2ZO9 B;  3FLO A;  3H67 A;  5EQV A;  1IT6 A;  2ZBM A;  3IB7 A;  3K7V C;  2YVT A;  3GVE A;  4DHL A;  4H1Y P;  4V0W A;  1UF3 A;  2IE4 C;  3TGH A;  3DSD A;  1XM7 A;  3PSN A;  4HD0 A;  4UWQ A;  3H64 A;  4M0V A;  5GTU A;  1OIE A;  1XZW A;  3P71 C; 
#chains in the Genus database with same CATH homology
 4YKE A;  3E0J A;  1OID A;  4J6O A;  3T1I A;  5JJT A;  2NXF A;  1S70 A;  2O8G A;  1QFC A;  1QHW A;  3KBP A;  3IVE A;  1S3L A;  1HPU A;  4F0Z A;  5F3W A;  3AUZ A;  2IAE C;  4LTY A;  3H62 B;  1AUI A;  4G9J A;  4KBP A;  3H66 A;  1WAO 1;  4DT2 A;  4KKZ A;  3E7A A;  3JYF A;  3QG5 C;  1W24 A;  4ZVZ A;  5J28 A;  4TUI A;  4I5L C;  4O43 A;  4O4K A;  2R17 A;  1SU1 A;  4H2G A;  3N5U A;  1V73 A;  2HYP A;  3RL4 A;  2Z72 A;  2IE3 C;  3EGG A;  1S3M A;  3FGA C;  4I5N C;  2A22 A;  4ZX2 A;  4UT3 B;  2O8A A;  1NNW A;  3ICF A;  3RQZ A;  4FBK A;  4Q7F A;  3QFK A;  3C9F A;  2USH A;  4MOV A;  1USH A;  4H1S A;  4ORA A;  5B8I A;  2Z06 A;  5C1V A;  2HY1 A;  4IYP C;  5INB A;  2DXN A;  4ORB A;  5JPF A;  3D03 A;  3LL8 A;  1TCO A;  3IVD A;  5HPE A;  4MP0 A;  1Z2W A;  2CV9 A;  2DXL A;  4UT2 A;  3E7B A;  3C5W C;  2Q8U A;  2XMO A;  1S8E A;  5IOH A;  4JA7 A;  1S3N A;  3ZTV A;  3DSC A;  2P6B A;  2BQ8 X;  4LAC C;  1KBP A;  2WDF A;  2GJU A;  2WDE A;  3DW8 C;  4V0V A;  4B2O A;  3H69 A;  4ORC A;  3QFM A;  5JPE A;  3H60 A;  2NYL C;  1S95 A;  3CK2 A;  3QFO A;  4O5G A;  4UT3 A;  4LU9 A;  2NPP C;  3QFN A;  3IB8 A;  4O24 A;  2AHD A;  2QJC A;  4NZV A;  1U32 A;  1T70 A;  2JOG A;  4FBW A;  1M63 A;  1JK7 A;  1G5B A;  3V4Y A;  1OI8 A;  1T71 A;  2BDX A;  2DFJ A;  4IL1 A;  1UTE A;  4H2B A;  2QFP A;  3H61 A;  3ZU0 A;  5DNY A;  3K7W C;  2WDD A;  4TUG A;  2QFR A;  2WDC A;  1HO5 A;  4WWL A;  2HYO A;  4H2I A;  2ZOA A;  3AV0 A;  1Z2X A;  3H63 A;  1FJM A;  3H68 A;  4V0X A;  3THO B;  3HVQ A;  4FCX A;  4H2F A;  4OR9 A;  4JA9 A;  1WAR A;  2NYM C;  2BCD A;  1MF8 A;  1II7 A;  4FBQ A;  1HP1 A;  3RL5 A;  4MOY A;  2Z1A A;  4XPN A;  4DSY A;  2YEQ A;  3PSO A;  2KKN A;  3EGH A;  3THN A;  3RL3 A;  2ZO9 B;  3FLO A;  3H67 A;  5EQV A;  1IT6 A;  2ZBM A;  3IB7 A;  3K7V C;  2YVT A;  3GVE A;  4DHL A;  4H1Y P;  4V0W A;  1UF3 A;  2IE4 C;  3TGH A;  3DSD A;  1XM7 A;  3PSN A;  4HD0 A;  4UWQ A;  3H64 A;  4M0V A;  5GTU A;  1OIE A;  1XZW A;  3P71 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...