2WDDA

Termus thermophilus sulfate thiohydrolase soxb in complex with sulfate
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
543
structure length
542
Chain Sequence
LYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 190
structure length 542
sequence length 543
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wddA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wddA03
2CV9A 4H2IA 4UWQA 2O8AA 4ORAA 1T70A 2YVTA 4V0XA 4H2BA 5B8IA 5JPFA 3C5WC 2IE3C 3E7AA 1V73A 2IAEC 2USHA 2ZBMA 3QFMA 1MF8A 4O43A 3H69A 3EGHA 2DFJA 3PSNA 1S3LA 1HP1A 2WDFA 3N5UA 1FJMA 4O24A 4XPNA 4O4KA 2O8GA 2HYPA 4I5LC 3FGAC 1UF3A 2BCDA 2P6BA 3DSCA 1UTEA 2WDCA 2HYOA 4OR9A 3H67A 3H60A 3IVEA 5C1VA 4ZVZA 4DHLA 2Z1AA 1W24A 3AUZA 3ZU0A 1QHWA 5JPEA 3ICFA 3ZTVA 1II7A 2WDEA 3CK2A 2WDDA 4FBKA 1T71A 2NYMC 4O5GA 4ORCA 2QJCA 1QFCA 3QFOA 1OIDA 2Z72A 3KBPA 2QFPA 4NZVA 4TUIA 4F0ZA 4G9JA 1OI8A 4J6OA 3H68A 2Q8UA 2JOGA 4YKEA 4LACC 3RQZA 1SU1A 1XZWA 3AV0A 4FCXA 4WWLA 1Z2WA 4IYPC 4M0VA 3T1IA 4H1SA 3IVDA 2XMOA 3RL5A 2AHDA 1JK7A 4B2OA 4UT3A 1U32A 1USHA 5IOHA 4LTYA 3IB7A 3LL8A 2IE4C 2GJUA 4MOVA 4DSYA 3V4YA 3DSDA 4FBQA 2NPPC 2Z06A 5J28A 3GVEA 1IT6A 3H63A 4H1YP 4HD0A 4JA9A 3K7WC 1WAO1 1HO5A 3RL3A 2R17A 3P71C 4IL1A 3PSOA 4V0WA 3TGHA 4MOYA 3H61A 2QFRA 3DW8C 1XM7A 3QFKA 2KKNA 4V0VA 4H2GA 3H64A 5DNYA 4UT3B 4I5NC 1WARA 3H66A 4UT2A 5JJTA 3THNA 1G5BA 1M63A 2A22A 1Z2XA 4TUGA 4H2FA 4MP0A 1KBPA 3RL4A 1S3NA 3IB8A 1S3MA 3E7BA 2BDXA 3JYFA 5INBA 4ORBA 4FBWA 4LU9A 1AUIA 3C9FA 2NYLC 4DT2A 2BQ8X 4JA7A 5GTUA 1OIEA 3EGGA 4KKZA 1HPUA 4Q7FA 1TCOA 5F3WA 2NXFA 1NNWA 5HPEA 2HY1A 3K7VC 1S70A 3H62B 3QFNA 1S95A 5EQVA 3THOB 1S8EA 3HVQA 4ZX2A 4KBPA 3QG5C
chains in the Genus database with same CATH superfamily
2CV9A 4H2IA 4UWQA 2O8AA 3E0JA 4ORAA 1T70A 2YVTA 4V0XA 4H2BA 5B8IA 5JPFA 3C5WC 2IE3C 3E7AA 1V73A 2IAEC 2USHA 2ZBMA 3QFMA 1MF8A 4O43A 3H69A 3EGHA 2DFJA 3PSNA 2YEQA 1S3LA 1HP1A 2WDFA 3N5UA 1FJMA 4O24A 4XPNA 4O4KA 2O8GA 2HYPA 4I5LC 3FGAC 1UF3A 2BCDA 2P6BA 3DSCA 1UTEA 2WDCA 2HYOA 4OR9A 3H67A 3H60A 3IVEA 5C1VA 4ZVZA 4DHLA 2Z1AA 1W24A 3AUZA 3ZU0A 1QHWA 5JPEA 3ICFA 3ZTVA 1II7A 2WDEA 2ZO9B 3CK2A 2WDDA 4FBKA 1T71A 2NYMC 4O5GA 4ORCA 2QJCA 1QFCA 3QFOA 1OIDA 2Z72A 3KBPA 2QFPA 4NZVA 4TUIA 4F0ZA 4G9JA 3FLOA 1OI8A 4J6OA 3H68A 2Q8UA 2JOGA 4YKEA 4LACC 3RQZA 1SU1A 1XZWA 3AV0A 4FCXA 4WWLA 1Z2WA 4IYPC 4M0VA 3T1IA 4H1SA 3IVDA 2XMOA 3RL5A 2AHDA 1JK7A 4B2OA 4UT3A 1U32A 1USHA 5IOHA 4LTYA 3IB7A 3LL8A 2DXNA 2IE4C 2GJUA 4MOVA 4DSYA 3V4YA 3DSDA 4FBQA 2NPPC 2Z06A 5J28A 3GVEA 1IT6A 3H63A 4H1YP 4HD0A 4JA9A 3K7WC 1WAO1 1HO5A 3RL3A 2DXLA 2R17A 3P71C 4IL1A 3PSOA 4V0WA 3TGHA 4MOYA 3H61A 2QFRA 3DW8C 1XM7A 3QFKA 2KKNA 4V0VA 4H2GA 3H64A 5DNYA 4UT3B 4I5NC 1WARA 3H66A 4UT2A 5JJTA 3THNA 1G5BA 1M63A 2A22A 1Z2XA 4TUGA 4H2FA 4MP0A 1KBPA 3RL4A 1S3NA 3IB8A 1S3MA 3E7BA 2BDXA 3JYFA 5INBA 4ORBA 4FBWA 4LU9A 1AUIA 3D03A 3C9FA 2NYLC 4DT2A 2BQ8X 4JA7A 5GTUA 1OIEA 3EGGA 4KKZA 1HPUA 4Q7FA 1TCOA 5F3WA 2NXFA 1NNWA 5HPEA 2HY1A 3K7VC 1S70A 3H62B 3QFNA 1S95A 5EQVA 3THOB 1S8EA 3HVQA 2ZOAA 4ZX2A 4KBPA 3QG5C
chains in the Genus database with same CATH topology
2CV9A 4H2IA 4UWQA 2O8AA 3E0JA 4ORAA 1T70A 2YVTA 4V0XA 4H2BA 5B8IA 5JPFA 3C5WC 2IE3C 3E7AA 1V73A 2IAEC 2USHA 2ZBMA 3QFMA 1MF8A 4O43A 3H69A 3EGHA 2DFJA 3PSNA 2YEQA 1S3LA 1HP1A 2WDFA 3N5UA 1FJMA 4O24A 4XPNA 4O4KA 2O8GA 2HYPA 4I5LC 3FGAC 1UF3A 2BCDA 2P6BA 3DSCA 1UTEA 2WDCA 2HYOA 4OR9A 3H67A 3H60A 3IVEA 5C1VA 4ZVZA 4DHLA 2Z1AA 1W24A 3AUZA 3ZU0A 1QHWA 5JPEA 3ICFA 3ZTVA 1II7A 2WDEA 2ZO9B 3CK2A 2WDDA 4FBKA 1T71A 2NYMC 4O5GA 4ORCA 2QJCA 1QFCA 3QFOA 1OIDA 2Z72A 3KBPA 2QFPA 4NZVA 4TUIA 4F0ZA 4G9JA 3FLOA 1OI8A 4J6OA 3H68A 2Q8UA 2JOGA 4YKEA 4LACC 3RQZA 1SU1A 1XZWA 3AV0A 4FCXA 4WWLA 1Z2WA 4IYPC 4M0VA 3T1IA 4H1SA 3IVDA 2XMOA 3RL5A 2AHDA 1JK7A 4B2OA 4UT3A 1U32A 1USHA 5IOHA 4LTYA 3IB7A 3LL8A 2DXNA 2IE4C 2GJUA 4MOVA 4DSYA 3V4YA 3DSDA 4FBQA 2NPPC 2Z06A 5J28A 3GVEA 1IT6A 3H63A 4H1YP 4HD0A 4JA9A 3K7WC 1WAO1 1HO5A 3RL3A 2DXLA 2R17A 3P71C 4IL1A 3PSOA 4V0WA 3TGHA 4MOYA 3H61A 2QFRA 3DW8C 1XM7A 3QFKA 2KKNA 4V0VA 4H2GA 3H64A 5DNYA 4UT3B 4I5NC 1WARA 3H66A 4UT2A 5JJTA 3THNA 1G5BA 1M63A 2A22A 1Z2XA 4TUGA 4H2FA 4MP0A 1KBPA 3RL4A 1S3NA 3IB8A 1S3MA 3E7BA 2BDXA 3JYFA 5INBA 4ORBA 4FBWA 4LU9A 1AUIA 3D03A 3C9FA 2NYLC 4DT2A 2BQ8X 4JA7A 5GTUA 1OIEA 3EGGA 4KKZA 1HPUA 4Q7FA 1TCOA 5F3WA 2NXFA 1NNWA 5HPEA 2HY1A 3K7VC 1S70A 3H62B 3QFNA 1S95A 5EQVA 3THOB 1S8EA 3HVQA 2ZOAA 4ZX2A 4KBPA 3QG5C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CV9 A;  4H2I A;  4UWQ A;  2O8A A;  4ORA A;  1T70 A;  2YVT A;  4V0X A;  4H2B A;  5B8I A;  5JPF A;  3C5W C;  2IE3 C;  3E7A A;  1V73 A;  2IAE C;  2USH A;  2ZBM A;  3QFM A;  1MF8 A;  4O43 A;  3H69 A;  3EGH A;  2DFJ A;  3PSN A;  1S3L A;  1HP1 A;  2WDF A;  3N5U A;  1FJM A;  4O24 A;  4XPN A;  4O4K A;  2O8G A;  2HYP A;  4I5L C;  3FGA C;  1UF3 A;  2BCD A;  2P6B A;  3DSC A;  1UTE A;  2WDC A;  2HYO A;  4OR9 A;  3H67 A;  3H60 A;  3IVE A;  5C1V A;  4ZVZ A;  4DHL A;  2Z1A A;  1W24 A;  3AUZ A;  3ZU0 A;  1QHW A;  5JPE A;  3ICF A;  3ZTV A;  1II7 A;  2WDE A;  3CK2 A;  2WDD A;  4FBK A;  1T71 A;  2NYM C;  4O5G A;  4ORC A;  2QJC A;  1QFC A;  3QFO A;  1OID A;  2Z72 A;  3KBP A;  2QFP A;  4NZV A;  4TUI A;  4F0Z A;  4G9J A;  1OI8 A;  4J6O A;  3H68 A;  2Q8U A;  2JOG A;  4YKE A;  4LAC C;  3RQZ A;  1SU1 A;  1XZW A;  3AV0 A;  4FCX A;  4WWL A;  1Z2W A;  4IYP C;  4M0V A;  3T1I A;  4H1S A;  3IVD A;  2XMO A;  3RL5 A;  2AHD A;  1JK7 A;  4B2O A;  4UT3 A;  1U32 A;  1USH A;  5IOH A;  4LTY A;  3IB7 A;  3LL8 A;  2IE4 C;  2GJU A;  4MOV A;  4DSY A;  3V4Y A;  3DSD A;  4FBQ A;  2NPP C;  2Z06 A;  5J28 A;  3GVE A;  1IT6 A;  3H63 A;  4H1Y P;  4HD0 A;  4JA9 A;  3K7W C;  1WAO 1;  1HO5 A;  3RL3 A;  2R17 A;  3P71 C;  4IL1 A;  3PSO A;  4V0W A;  3TGH A;  4MOY A;  3H61 A;  2QFR A;  3DW8 C;  1XM7 A;  3QFK A;  2KKN A;  4V0V A;  4H2G A;  3H64 A;  5DNY A;  4UT3 B;  4I5N C;  1WAR A;  3H66 A;  4UT2 A;  5JJT A;  3THN A;  1G5B A;  1M63 A;  2A22 A;  1Z2X A;  4TUG A;  4H2F A;  4MP0 A;  1KBP A;  3RL4 A;  1S3N A;  3IB8 A;  1S3M A;  3E7B A;  2BDX A;  3JYF A;  5INB A;  4ORB A;  4FBW A;  4LU9 A;  1AUI A;  3C9F A;  2NYL C;  4DT2 A;  2BQ8 X;  4JA7 A;  5GTU A;  1OIE A;  3EGG A;  4KKZ A;  1HPU A;  4Q7F A;  1TCO A;  5F3W A;  2NXF A;  1NNW A;  5HPE A;  2HY1 A;  3K7V C;  1S70 A;  3H62 B;  3QFN A;  1S95 A;  5EQV A;  3THO B;  1S8E A;  3HVQ A;  4ZX2 A;  4KBP A;  3QG5 C; 
#chains in the Genus database with same CATH topology
 2CV9 A;  4H2I A;  4UWQ A;  2O8A A;  3E0J A;  4ORA A;  1T70 A;  2YVT A;  4V0X A;  4H2B A;  5B8I A;  5JPF A;  3C5W C;  2IE3 C;  3E7A A;  1V73 A;  2IAE C;  2USH A;  2ZBM A;  3QFM A;  1MF8 A;  4O43 A;  3H69 A;  3EGH A;  2DFJ A;  3PSN A;  2YEQ A;  1S3L A;  1HP1 A;  2WDF A;  3N5U A;  1FJM A;  4O24 A;  4XPN A;  4O4K A;  2O8G A;  2HYP A;  4I5L C;  3FGA C;  1UF3 A;  2BCD A;  2P6B A;  3DSC A;  1UTE A;  2WDC A;  2HYO A;  4OR9 A;  3H67 A;  3H60 A;  3IVE A;  5C1V A;  4ZVZ A;  4DHL A;  2Z1A A;  1W24 A;  3AUZ A;  3ZU0 A;  1QHW A;  5JPE A;  3ICF A;  3ZTV A;  1II7 A;  2WDE A;  2ZO9 B;  3CK2 A;  2WDD A;  4FBK A;  1T71 A;  2NYM C;  4O5G A;  4ORC A;  2QJC A;  1QFC A;  3QFO A;  1OID A;  2Z72 A;  3KBP A;  2QFP A;  4NZV A;  4TUI A;  4F0Z A;  4G9J A;  3FLO A;  1OI8 A;  4J6O A;  3H68 A;  2Q8U A;  2JOG A;  4YKE A;  4LAC C;  3RQZ A;  1SU1 A;  1XZW A;  3AV0 A;  4FCX A;  4WWL A;  1Z2W A;  4IYP C;  4M0V A;  3T1I A;  4H1S A;  3IVD A;  2XMO A;  3RL5 A;  2AHD A;  1JK7 A;  4B2O A;  4UT3 A;  1U32 A;  1USH A;  5IOH A;  4LTY A;  3IB7 A;  3LL8 A;  2DXN A;  2IE4 C;  2GJU A;  4MOV A;  4DSY A;  3V4Y A;  3DSD A;  4FBQ A;  2NPP C;  2Z06 A;  5J28 A;  3GVE A;  1IT6 A;  3H63 A;  4H1Y P;  4HD0 A;  4JA9 A;  3K7W C;  1WAO 1;  1HO5 A;  3RL3 A;  2DXL A;  2R17 A;  3P71 C;  4IL1 A;  3PSO A;  4V0W A;  3TGH A;  4MOY A;  3H61 A;  2QFR A;  3DW8 C;  1XM7 A;  3QFK A;  2KKN A;  4V0V A;  4H2G A;  3H64 A;  5DNY A;  4UT3 B;  4I5N C;  1WAR A;  3H66 A;  4UT2 A;  5JJT A;  3THN A;  1G5B A;  1M63 A;  2A22 A;  1Z2X A;  4TUG A;  4H2F A;  4MP0 A;  1KBP A;  3RL4 A;  1S3N A;  3IB8 A;  1S3M A;  3E7B A;  2BDX A;  3JYF A;  5INB A;  4ORB A;  4FBW A;  4LU9 A;  1AUI A;  3D03 A;  3C9F A;  2NYL C;  4DT2 A;  2BQ8 X;  4JA7 A;  5GTU A;  1OIE A;  3EGG A;  4KKZ A;  1HPU A;  4Q7F A;  1TCO A;  5F3W A;  2NXF A;  1NNW A;  5HPE A;  2HY1 A;  3K7V C;  1S70 A;  3H62 B;  3QFN A;  1S95 A;  5EQV A;  3THO B;  1S8E A;  3HVQ A;  2ZOA A;  4ZX2 A;  4KBP A;  3QG5 C; 
#chains in the Genus database with same CATH homology
 2CV9 A;  4H2I A;  4UWQ A;  2O8A A;  3E0J A;  4ORA A;  1T70 A;  2YVT A;  4V0X A;  4H2B A;  5B8I A;  5JPF A;  3C5W C;  2IE3 C;  3E7A A;  1V73 A;  2IAE C;  2USH A;  2ZBM A;  3QFM A;  1MF8 A;  4O43 A;  3H69 A;  3EGH A;  2DFJ A;  3PSN A;  2YEQ A;  1S3L A;  1HP1 A;  2WDF A;  3N5U A;  1FJM A;  4O24 A;  4XPN A;  4O4K A;  2O8G A;  2HYP A;  4I5L C;  3FGA C;  1UF3 A;  2BCD A;  2P6B A;  3DSC A;  1UTE A;  2WDC A;  2HYO A;  4OR9 A;  3H67 A;  3H60 A;  3IVE A;  5C1V A;  4ZVZ A;  4DHL A;  2Z1A A;  1W24 A;  3AUZ A;  3ZU0 A;  1QHW A;  5JPE A;  3ICF A;  3ZTV A;  1II7 A;  2WDE A;  2ZO9 B;  3CK2 A;  2WDD A;  4FBK A;  1T71 A;  2NYM C;  4O5G A;  4ORC A;  2QJC A;  1QFC A;  3QFO A;  1OID A;  2Z72 A;  3KBP A;  2QFP A;  4NZV A;  4TUI A;  4F0Z A;  4G9J A;  3FLO A;  1OI8 A;  4J6O A;  3H68 A;  2Q8U A;  2JOG A;  4YKE A;  4LAC C;  3RQZ A;  1SU1 A;  1XZW A;  3AV0 A;  4FCX A;  4WWL A;  1Z2W A;  4IYP C;  4M0V A;  3T1I A;  4H1S A;  3IVD A;  2XMO A;  3RL5 A;  2AHD A;  1JK7 A;  4B2O A;  4UT3 A;  1U32 A;  1USH A;  5IOH A;  4LTY A;  3IB7 A;  3LL8 A;  2DXN A;  2IE4 C;  2GJU A;  4MOV A;  4DSY A;  3V4Y A;  3DSD A;  4FBQ A;  2NPP C;  2Z06 A;  5J28 A;  3GVE A;  1IT6 A;  3H63 A;  4H1Y P;  4HD0 A;  4JA9 A;  3K7W C;  1WAO 1;  1HO5 A;  3RL3 A;  2DXL A;  2R17 A;  3P71 C;  4IL1 A;  3PSO A;  4V0W A;  3TGH A;  4MOY A;  3H61 A;  2QFR A;  3DW8 C;  1XM7 A;  3QFK A;  2KKN A;  4V0V A;  4H2G A;  3H64 A;  5DNY A;  4UT3 B;  4I5N C;  1WAR A;  3H66 A;  4UT2 A;  5JJT A;  3THN A;  1G5B A;  1M63 A;  2A22 A;  1Z2X A;  4TUG A;  4H2F A;  4MP0 A;  1KBP A;  3RL4 A;  1S3N A;  3IB8 A;  1S3M A;  3E7B A;  2BDX A;  3JYF A;  5INB A;  4ORB A;  4FBW A;  4LU9 A;  1AUI A;  3D03 A;  3C9F A;  2NYL C;  4DT2 A;  2BQ8 X;  4JA7 A;  5GTU A;  1OIE A;  3EGG A;  4KKZ A;  1HPU A;  4Q7F A;  1TCO A;  5F3W A;  2NXF A;  1NNW A;  5HPE A;  2HY1 A;  3K7V C;  1S70 A;  3H62 B;  3QFN A;  1S95 A;  5EQV A;  3THO B;  1S8E A;  3HVQ A;  2ZOA A;  4ZX2 A;  4KBP A;  3QG5 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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