2R17A

Functional architecture of the retromer cargo-recognition complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
183
structure length
183
Chain Sequence
MMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Homo sapiens
publication title Functional architecture of the retromer cargo-recognition complex.
pubmed doi rcsb
molecule keywords Vacuolar protein sorting-associated protein 29
total genus 41
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2r17A00
1NNWA 3KBPA 4WWLA 4UT3B 1OIEA 4FBWA 5HPEA 3V4YA 4M0VA 3QFMA 3E7BA 1OI8A 3H64A 1IT6A 3H60A 3IVEA 3ZTVA 1S3LA 4UWQA 1S8EA 3LL8A 2XMOA 4I5LC 4XPNA 4ZX2A 3E7AA 4H2BA 2JOGA 2IAEC 2CV9A 5GTUA 3T1IA 1HPUA 3ICFA 2HYOA 4ORCA 1W24A 4V0XA 4MOVA 4ZVZA 1II7A 2Z06A 4ORAA 3N5UA 4TUIA 3DSCA 5JJTA 3EGGA 3IB8A 4UT2A 4TUGA 4DT2A 2QFRA 4F0ZA 2YVTA 4NZVA 4O24A 1QHWA 2BDXA 5JPEA 1U32A 1QFCA 5EQVA 2Q8UA 5J28A 3THNA 4LTYA 3H66A 3DSDA 4H2FA 3PSNA 3CK2A 2IE3C 2BQ8X 3H61A 4I5NC 4JA7A 1OIDA 2ZBMA 5F3WA 1USHA 3QFKA 4KKZA 1M63A 1XZWA 2WDCA 2Z1AA 4J6OA 3RL3A 2KKNA 2Z72A 3HVQA 5B8IA 4YKEA 4FBKA 1KBPA 1HO5A 2BCDA 3RL4A 3H68A 4UT3A 4MOYA 4DSYA 4HD0A 2P6BA 3H62B 4V0VA 3AUZA 3K7VC 1UF3A 4H1SA 3FGAC 1MF8A 3IB7A 2GJUA 3C5WC 2NPPC 4FCXA 4IL1A 3IVDA 3P71C 4IYPC 2HYPA 3EGHA 3RQZA 4FBQA 4LU9A 4O43A 3TGHA 1WAO1 3THOB 1WARA 4Q7FA 3H63A 1Z2WA 4B2OA 1S95A 4LACC 2IE4C 2DFJA 3H69A 1TCOA 4OR9A 3QFNA 3AV0A 4ORBA 4MP0A 2NYMC 4KBPA 4G9JA 1UTEA 2USHA 5INBA 3H67A 1T70A 4DHLA 1Z2XA 2QJCA 5JPFA 2O8GA 1S3NA 3JYFA 4H2IA 5DNYA 2HY1A 4JA9A 3GVEA 2WDFA 4O4KA 2AHDA 3QFOA 1HP1A 1S3MA 2NXFA 2A22A 1V73A 3C9FA 4H1YP 1T71A 2WDEA 3DW8C 2WDDA 1XM7A 4H2GA 3K7WC 5C1VA 1SU1A 1FJMA 3QG5C 2QFPA 1G5BA 4O5GA 1AUIA 1S70A 2O8AA 1JK7A 2NYLC 5IOHA 3ZU0A 3PSOA 2R17A 4V0WA 3RL5A
chains in the Genus database with same CATH superfamily
1NNWA 3KBPA 4WWLA 4UT3B 1OIEA 4FBWA 5HPEA 3V4YA 4M0VA 3QFMA 3E7BA 1OI8A 3H64A 2ZOAA 1IT6A 3H60A 3IVEA 3ZTVA 1S3LA 4UWQA 1S8EA 3LL8A 2XMOA 4I5LC 4XPNA 4ZX2A 3E7AA 4H2BA 2JOGA 2IAEC 2CV9A 5GTUA 3T1IA 1HPUA 3ICFA 2HYOA 4ORCA 1W24A 4V0XA 4MOVA 4ZVZA 1II7A 2Z06A 4ORAA 3N5UA 4TUIA 3DSCA 5JJTA 3EGGA 3IB8A 4UT2A 4TUGA 4DT2A 2QFRA 4F0ZA 2YVTA 4NZVA 4O24A 1QHWA 2BDXA 5JPEA 1U32A 1QFCA 5EQVA 2Q8UA 5J28A 3THNA 3D03A 4LTYA 3H66A 3DSDA 4H2FA 3PSNA 3CK2A 2IE3C 3E0JA 2BQ8X 2ZO9B 3H61A 4I5NC 4JA7A 1OIDA 2ZBMA 5F3WA 1USHA 3QFKA 4KKZA 1M63A 1XZWA 2WDCA 2Z1AA 4J6OA 3RL3A 2KKNA 2Z72A 3FLOA 3HVQA 5B8IA 2DXLA 4YKEA 4FBKA 1KBPA 1HO5A 2BCDA 3RL4A 3H68A 4UT3A 4MOYA 4DSYA 4HD0A 2P6BA 3H62B 4V0VA 3AUZA 3K7VC 1UF3A 4H1SA 3FGAC 1MF8A 3IB7A 2GJUA 3C5WC 2NPPC 4FCXA 4IL1A 3IVDA 3P71C 4IYPC 2HYPA 3EGHA 3RQZA 4FBQA 4LU9A 4O43A 3TGHA 1WAO1 3THOB 1WARA 4Q7FA 3H63A 1Z2WA 4B2OA 1S95A 4LACC 2IE4C 2DFJA 3H69A 1TCOA 4OR9A 3QFNA 3AV0A 4ORBA 4MP0A 2NYMC 4KBPA 4G9JA 1UTEA 2USHA 5INBA 3H67A 1T70A 4DHLA 1Z2XA 2QJCA 5JPFA 2O8GA 1S3NA 3JYFA 4H2IA 5DNYA 2HY1A 4JA9A 3GVEA 2WDFA 4O4KA 2AHDA 3QFOA 1HP1A 1S3MA 2NXFA 2A22A 1V73A 2YEQA 3C9FA 4H1YP 1T71A 2WDEA 3DW8C 2WDDA 1XM7A 4H2GA 3K7WC 2DXNA 5C1VA 1SU1A 1FJMA 3QG5C 2QFPA 1G5BA 4O5GA 1AUIA 1S70A 2O8AA 1JK7A 2NYLC 5IOHA 3ZU0A 3PSOA 2R17A 4V0WA 3RL5A
chains in the Genus database with same CATH topology
1NNWA 3KBPA 4WWLA 4UT3B 1OIEA 4FBWA 5HPEA 3V4YA 4M0VA 3QFMA 3E7BA 1OI8A 3H64A 2ZOAA 1IT6A 3H60A 3IVEA 3ZTVA 1S3LA 4UWQA 1S8EA 3LL8A 2XMOA 4I5LC 4XPNA 4ZX2A 3E7AA 4H2BA 2JOGA 2IAEC 2CV9A 5GTUA 3T1IA 1HPUA 3ICFA 2HYOA 4ORCA 1W24A 4V0XA 4MOVA 4ZVZA 1II7A 2Z06A 4ORAA 3N5UA 4TUIA 3DSCA 5JJTA 3EGGA 3IB8A 4UT2A 4TUGA 4DT2A 2QFRA 4F0ZA 2YVTA 4NZVA 4O24A 1QHWA 2BDXA 5JPEA 1U32A 1QFCA 5EQVA 2Q8UA 5J28A 3THNA 3D03A 4LTYA 3H66A 3DSDA 4H2FA 3PSNA 3CK2A 2IE3C 3E0JA 2BQ8X 2ZO9B 3H61A 4I5NC 4JA7A 1OIDA 2ZBMA 5F3WA 1USHA 3QFKA 4KKZA 1M63A 1XZWA 2WDCA 2Z1AA 4J6OA 3RL3A 2KKNA 2Z72A 3FLOA 3HVQA 5B8IA 2DXLA 4YKEA 4FBKA 1KBPA 1HO5A 2BCDA 3RL4A 3H68A 4UT3A 4MOYA 4DSYA 4HD0A 2P6BA 3H62B 4V0VA 3AUZA 3K7VC 1UF3A 4H1SA 3FGAC 1MF8A 3IB7A 2GJUA 3C5WC 2NPPC 4FCXA 4IL1A 3IVDA 3P71C 4IYPC 2HYPA 3EGHA 3RQZA 4FBQA 4LU9A 4O43A 3TGHA 1WAO1 3THOB 1WARA 4Q7FA 3H63A 1Z2WA 4B2OA 1S95A 4LACC 2IE4C 2DFJA 3H69A 1TCOA 4OR9A 3QFNA 3AV0A 4ORBA 4MP0A 2NYMC 4KBPA 4G9JA 1UTEA 2USHA 5INBA 3H67A 1T70A 4DHLA 1Z2XA 2QJCA 5JPFA 2O8GA 1S3NA 3JYFA 4H2IA 5DNYA 2HY1A 4JA9A 3GVEA 2WDFA 4O4KA 2AHDA 3QFOA 1HP1A 1S3MA 2NXFA 2A22A 1V73A 2YEQA 3C9FA 4H1YP 1T71A 2WDEA 3DW8C 2WDDA 1XM7A 4H2GA 3K7WC 2DXNA 5C1VA 1SU1A 1FJMA 3QG5C 2QFPA 1G5BA 4O5GA 1AUIA 1S70A 2O8AA 1JK7A 2NYLC 5IOHA 3ZU0A 3PSOA 2R17A 4V0WA 3RL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NNW A;  3KBP A;  4WWL A;  4UT3 B;  1OIE A;  4FBW A;  5HPE A;  3V4Y A;  4M0V A;  3QFM A;  3E7B A;  1OI8 A;  3H64 A;  1IT6 A;  3H60 A;  3IVE A;  3ZTV A;  1S3L A;  4UWQ A;  1S8E A;  3LL8 A;  2XMO A;  4I5L C;  4XPN A;  4ZX2 A;  3E7A A;  4H2B A;  2JOG A;  2IAE C;  2CV9 A;  5GTU A;  3T1I A;  1HPU A;  3ICF A;  2HYO A;  4ORC A;  1W24 A;  4V0X A;  4MOV A;  4ZVZ A;  1II7 A;  2Z06 A;  4ORA A;  3N5U A;  4TUI A;  3DSC A;  5JJT A;  3EGG A;  3IB8 A;  4UT2 A;  4TUG A;  4DT2 A;  2QFR A;  4F0Z A;  2YVT A;  4NZV A;  4O24 A;  1QHW A;  2BDX A;  5JPE A;  1U32 A;  1QFC A;  5EQV A;  2Q8U A;  5J28 A;  3THN A;  4LTY A;  3H66 A;  3DSD A;  4H2F A;  3PSN A;  3CK2 A;  2IE3 C;  2BQ8 X;  3H61 A;  4I5N C;  4JA7 A;  1OID A;  2ZBM A;  5F3W A;  1USH A;  3QFK A;  4KKZ A;  1M63 A;  1XZW A;  2WDC A;  2Z1A A;  4J6O A;  3RL3 A;  2KKN A;  2Z72 A;  3HVQ A;  5B8I A;  4YKE A;  4FBK A;  1KBP A;  1HO5 A;  2BCD A;  3RL4 A;  3H68 A;  4UT3 A;  4MOY A;  4DSY A;  4HD0 A;  2P6B A;  3H62 B;  4V0V A;  3AUZ A;  3K7V C;  1UF3 A;  4H1S A;  3FGA C;  1MF8 A;  3IB7 A;  2GJU A;  3C5W C;  2NPP C;  4FCX A;  4IL1 A;  3IVD A;  3P71 C;  4IYP C;  2HYP A;  3EGH A;  3RQZ A;  4FBQ A;  4LU9 A;  4O43 A;  3TGH A;  1WAO 1;  3THO B;  1WAR A;  4Q7F A;  3H63 A;  1Z2W A;  4B2O A;  1S95 A;  4LAC C;  2IE4 C;  2DFJ A;  3H69 A;  1TCO A;  4OR9 A;  3QFN A;  3AV0 A;  4ORB A;  4MP0 A;  2NYM C;  4KBP A;  4G9J A;  1UTE A;  2USH A;  5INB A;  3H67 A;  1T70 A;  4DHL A;  1Z2X A;  2QJC A;  5JPF A;  2O8G A;  1S3N A;  3JYF A;  4H2I A;  5DNY A;  2HY1 A;  4JA9 A;  3GVE A;  2WDF A;  4O4K A;  2AHD A;  3QFO A;  1HP1 A;  1S3M A;  2NXF A;  2A22 A;  1V73 A;  3C9F A;  4H1Y P;  1T71 A;  2WDE A;  3DW8 C;  2WDD A;  1XM7 A;  4H2G A;  3K7W C;  5C1V A;  1SU1 A;  1FJM A;  3QG5 C;  2QFP A;  1G5B A;  4O5G A;  1AUI A;  1S70 A;  2O8A A;  1JK7 A;  2NYL C;  5IOH A;  3ZU0 A;  3PSO A;  2R17 A;  4V0W A;  3RL5 A; 
#chains in the Genus database with same CATH topology
 1NNW A;  3KBP A;  4WWL A;  4UT3 B;  1OIE A;  4FBW A;  5HPE A;  3V4Y A;  4M0V A;  3QFM A;  3E7B A;  1OI8 A;  3H64 A;  2ZOA A;  1IT6 A;  3H60 A;  3IVE A;  3ZTV A;  1S3L A;  4UWQ A;  1S8E A;  3LL8 A;  2XMO A;  4I5L C;  4XPN A;  4ZX2 A;  3E7A A;  4H2B A;  2JOG A;  2IAE C;  2CV9 A;  5GTU A;  3T1I A;  1HPU A;  3ICF A;  2HYO A;  4ORC A;  1W24 A;  4V0X A;  4MOV A;  4ZVZ A;  1II7 A;  2Z06 A;  4ORA A;  3N5U A;  4TUI A;  3DSC A;  5JJT A;  3EGG A;  3IB8 A;  4UT2 A;  4TUG A;  4DT2 A;  2QFR A;  4F0Z A;  2YVT A;  4NZV A;  4O24 A;  1QHW A;  2BDX A;  5JPE A;  1U32 A;  1QFC A;  5EQV A;  2Q8U A;  5J28 A;  3THN A;  3D03 A;  4LTY A;  3H66 A;  3DSD A;  4H2F A;  3PSN A;  3CK2 A;  2IE3 C;  3E0J A;  2BQ8 X;  2ZO9 B;  3H61 A;  4I5N C;  4JA7 A;  1OID A;  2ZBM A;  5F3W A;  1USH A;  3QFK A;  4KKZ A;  1M63 A;  1XZW A;  2WDC A;  2Z1A A;  4J6O A;  3RL3 A;  2KKN A;  2Z72 A;  3FLO A;  3HVQ A;  5B8I A;  2DXL A;  4YKE A;  4FBK A;  1KBP A;  1HO5 A;  2BCD A;  3RL4 A;  3H68 A;  4UT3 A;  4MOY A;  4DSY A;  4HD0 A;  2P6B A;  3H62 B;  4V0V A;  3AUZ A;  3K7V C;  1UF3 A;  4H1S A;  3FGA C;  1MF8 A;  3IB7 A;  2GJU A;  3C5W C;  2NPP C;  4FCX A;  4IL1 A;  3IVD A;  3P71 C;  4IYP C;  2HYP A;  3EGH A;  3RQZ A;  4FBQ A;  4LU9 A;  4O43 A;  3TGH A;  1WAO 1;  3THO B;  1WAR A;  4Q7F A;  3H63 A;  1Z2W A;  4B2O A;  1S95 A;  4LAC C;  2IE4 C;  2DFJ A;  3H69 A;  1TCO A;  4OR9 A;  3QFN A;  3AV0 A;  4ORB A;  4MP0 A;  2NYM C;  4KBP A;  4G9J A;  1UTE A;  2USH A;  5INB A;  3H67 A;  1T70 A;  4DHL A;  1Z2X A;  2QJC A;  5JPF A;  2O8G A;  1S3N A;  3JYF A;  4H2I A;  5DNY A;  2HY1 A;  4JA9 A;  3GVE A;  2WDF A;  4O4K A;  2AHD A;  3QFO A;  1HP1 A;  1S3M A;  2NXF A;  2A22 A;  1V73 A;  2YEQ A;  3C9F A;  4H1Y P;  1T71 A;  2WDE A;  3DW8 C;  2WDD A;  1XM7 A;  4H2G A;  3K7W C;  2DXN A;  5C1V A;  1SU1 A;  1FJM A;  3QG5 C;  2QFP A;  1G5B A;  4O5G A;  1AUI A;  1S70 A;  2O8A A;  1JK7 A;  2NYL C;  5IOH A;  3ZU0 A;  3PSO A;  2R17 A;  4V0W A;  3RL5 A; 
#chains in the Genus database with same CATH homology
 1NNW A;  3KBP A;  4WWL A;  4UT3 B;  1OIE A;  4FBW A;  5HPE A;  3V4Y A;  4M0V A;  3QFM A;  3E7B A;  1OI8 A;  3H64 A;  2ZOA A;  1IT6 A;  3H60 A;  3IVE A;  3ZTV A;  1S3L A;  4UWQ A;  1S8E A;  3LL8 A;  2XMO A;  4I5L C;  4XPN A;  4ZX2 A;  3E7A A;  4H2B A;  2JOG A;  2IAE C;  2CV9 A;  5GTU A;  3T1I A;  1HPU A;  3ICF A;  2HYO A;  4ORC A;  1W24 A;  4V0X A;  4MOV A;  4ZVZ A;  1II7 A;  2Z06 A;  4ORA A;  3N5U A;  4TUI A;  3DSC A;  5JJT A;  3EGG A;  3IB8 A;  4UT2 A;  4TUG A;  4DT2 A;  2QFR A;  4F0Z A;  2YVT A;  4NZV A;  4O24 A;  1QHW A;  2BDX A;  5JPE A;  1U32 A;  1QFC A;  5EQV A;  2Q8U A;  5J28 A;  3THN A;  3D03 A;  4LTY A;  3H66 A;  3DSD A;  4H2F A;  3PSN A;  3CK2 A;  2IE3 C;  3E0J A;  2BQ8 X;  2ZO9 B;  3H61 A;  4I5N C;  4JA7 A;  1OID A;  2ZBM A;  5F3W A;  1USH A;  3QFK A;  4KKZ A;  1M63 A;  1XZW A;  2WDC A;  2Z1A A;  4J6O A;  3RL3 A;  2KKN A;  2Z72 A;  3FLO A;  3HVQ A;  5B8I A;  2DXL A;  4YKE A;  4FBK A;  1KBP A;  1HO5 A;  2BCD A;  3RL4 A;  3H68 A;  4UT3 A;  4MOY A;  4DSY A;  4HD0 A;  2P6B A;  3H62 B;  4V0V A;  3AUZ A;  3K7V C;  1UF3 A;  4H1S A;  3FGA C;  1MF8 A;  3IB7 A;  2GJU A;  3C5W C;  2NPP C;  4FCX A;  4IL1 A;  3IVD A;  3P71 C;  4IYP C;  2HYP A;  3EGH A;  3RQZ A;  4FBQ A;  4LU9 A;  4O43 A;  3TGH A;  1WAO 1;  3THO B;  1WAR A;  4Q7F A;  3H63 A;  1Z2W A;  4B2O A;  1S95 A;  4LAC C;  2IE4 C;  2DFJ A;  3H69 A;  1TCO A;  4OR9 A;  3QFN A;  3AV0 A;  4ORB A;  4MP0 A;  2NYM C;  4KBP A;  4G9J A;  1UTE A;  2USH A;  5INB A;  3H67 A;  1T70 A;  4DHL A;  1Z2X A;  2QJC A;  5JPF A;  2O8G A;  1S3N A;  3JYF A;  4H2I A;  5DNY A;  2HY1 A;  4JA9 A;  3GVE A;  2WDF A;  4O4K A;  2AHD A;  3QFO A;  1HP1 A;  1S3M A;  2NXF A;  2A22 A;  1V73 A;  2YEQ A;  3C9F A;  4H1Y P;  1T71 A;  2WDE A;  3DW8 C;  2WDD A;  1XM7 A;  4H2G A;  3K7W C;  2DXN A;  5C1V A;  1SU1 A;  1FJM A;  3QG5 C;  2QFP A;  1G5B A;  4O5G A;  1AUI A;  1S70 A;  2O8A A;  1JK7 A;  2NYL C;  5IOH A;  3ZU0 A;  3PSO A;  2R17 A;  4V0W A;  3RL5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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