2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
b'YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
molecule keywords SULFUR OXIDATION PROTEIN SOXB
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
5JPFA 2XMOA 4FCXA 2IAEC 1NNWA 3JYFA 1HO5A 1UTEA 2Z06A 1SU1A 4O5GA 4H2BA 1II7A 4B2OA 4IL1A 2YVTA 2JOGA 5JJTA 5B8IA 3V4YA 1T70A 2CV9A 4H2GA 1S95A 3RL3A 4DT2A 2O8AA 3H66A 4H1YP 4O4KA 1Z2WA 2WDEA 4ORAA 4I5NC 3IB8A 4UWQA 3C5WC 2QJCA 1M63A 3H68A 3PSOA 4NZVA 2KKNA 1QHWA 4MP0A 2NPPC 2WDDA 4MOYA 4O43A 4ZVZA 5JPEA 5J28A 4TUGA 3H62B 1G5BA 5EQVA 4YKEA 4Q7FA 4KKZA 2QFRA 5F3WA 2NYMC 1XZWA 2HYPA 2P6BA 2ZBMA 3ICFA 4LTYA 3H63A 3EGGA 1W24A 2NYLC 3AUZA 4LACC 4O24A 3H60A 4H1SA 4JA7A 1OI8A 3GVEA 3KBPA 3H64A 3ZU0A 1S3MA 2BCDA 2BQ8X 5IOHA 1S8EA 3DSCA 3H69A 2AHDA 4V0WA 3K7WC 4DHLA 4WWLA 3IB7A 3TGHA 3T1IA 1WARA 4OR9A 1T71A 3RQZA 3RL5A 4DSYA 2O8GA 4UT2A 5INBA 2USHA 2GJUA 3FGAC 3E7AA 4FBQA 4H2FA 3DW8C 4G9JA 4J6OA 3H61A 2Z1AA 4IYPC 1QFCA 3THNA 2Q8UA 1FJMA 4M0VA 1JK7A 3EGHA 1IT6A 4HD0A 2HY1A 4XPNA 3ZTVA 3CK2A 4LU9A 3RL4A 3HVQA 4ORBA 4ZX2A 3QFMA 3K7VC 1XM7A 1OIDA 2Z72A 3H67A 5GTUA 5HPEA 1HP1A 2HYOA 2WDFA 1OIEA 3QG5C 4FBKA 4UT3A 4I5LC 1HPUA 4H2IA 2A22A 2IE3C 5DNYA 4JA9A 3QFOA 3AV0A 1S3NA 3IVEA 2QFPA 3C9FA 3P71C 3IVDA 4F0ZA 1MF8A 2NXFA 4MOVA 3E7BA 2BDXA 3QFNA 4ORCA 2IE4C 1AUIA 3N5UA 1WAO1 3LL8A 2R17A 1TCOA 4KBPA 4V0VA 3PSNA 1S70A 4FBWA 4UT3B 4TUIA 1KBPA 2WDCA 1UF3A 1USHA 3DSDA 1Z2XA 5C1VA 3THOB 1V73A 3QFKA 2DFJA 4V0XA 1U32A 1S3LA
chains in the Genus database with same CATH superfamily
5JPFA 2XMOA 3E0JA 2IAEC 4FCXA 1NNWA 3JYFA 1HO5A 1UTEA 2Z06A 1SU1A 4O5GA 4H2BA 1II7A 4B2OA 4IL1A 2YVTA 2JOGA 5JJTA 5B8IA 3V4YA 1T70A 2CV9A 4H2GA 1S95A 3RL3A 2DXLA 4DT2A 2O8AA 3H66A 4H1YP 4O4KA 1Z2WA 2WDEA 4ORAA 4I5NC 3IB8A 4UWQA 3C5WC 2QJCA 1M63A 3H68A 3PSOA 4NZVA 2KKNA 1QHWA 4MP0A 2NPPC 2WDDA 4MOYA 4O43A 4ZVZA 5JPEA 5J28A 4TUGA 3H62B 1G5BA 5EQVA 4YKEA 4Q7FA 4KKZA 2QFRA 5F3WA 2NYMC 1XZWA 2HYPA 2P6BA 2ZBMA 3ICFA 4LTYA 3H63A 3EGGA 1W24A 2NYLC 3AUZA 4LACC 4O24A 3H60A 4H1SA 4JA7A 1OI8A 3GVEA 3KBPA 3H64A 3ZU0A 1S3MA 2BCDA 2BQ8X 5IOHA 1S8EA 3DSCA 3H69A 2AHDA 4V0WA 3K7WC 4DHLA 4WWLA 3IB7A 3TGHA 3T1IA 1WARA 4OR9A 1T71A 3RQZA 3RL5A 4DSYA 2O8GA 4UT2A 5INBA 2USHA 2GJUA 3FGAC 3E7AA 4FBQA 4H2FA 3DW8C 4G9JA 4J6OA 3H61A 2Z1AA 4IYPC 1QFCA 3THNA 2Q8UA 1FJMA 4M0VA 1JK7A 3EGHA 1IT6A 4HD0A 2HY1A 4XPNA 3ZTVA 3CK2A 4LU9A 3RL4A 3HVQA 4ORBA 4ZX2A 3D03A 3QFMA 3K7VC 1XM7A 1OIDA 2Z72A 3H67A 5GTUA 5HPEA 1HP1A 2HYOA 2WDFA 1OIEA 3QG5C 4FBKA 4UT3A 4I5LC 1HPUA 4H2IA 2A22A 2IE3C 5DNYA 4JA9A 3QFOA 3AV0A 1S3NA 3IVEA 2QFPA 3C9FA 3P71C 2DXNA 3IVDA 4F0ZA 2ZO9B 1MF8A 2NXFA 4MOVA 3E7BA 3FLOA 2BDXA 3QFNA 4ORCA 2YEQA 2IE4C 1AUIA 3N5UA 1WAO1 3LL8A 2R17A 1TCOA 4KBPA 4V0VA 3PSNA 1S70A 4FBWA 4UT3B 4TUIA 1KBPA 2ZOAA 2WDCA 1UF3A 1USHA 3DSDA 1Z2XA 5C1VA 3THOB 1V73A 3QFKA 2DFJA 4V0XA 1U32A 1S3LA
chains in the Genus database with same CATH topology
5JPFA 2XMOA 3E0JA 2IAEC 4FCXA 1NNWA 3JYFA 1HO5A 1UTEA 2Z06A 1SU1A 4O5GA 4H2BA 1II7A 4B2OA 4IL1A 2YVTA 2JOGA 5JJTA 5B8IA 3V4YA 1T70A 2CV9A 4H2GA 1S95A 3RL3A 2DXLA 4DT2A 2O8AA 3H66A 4H1YP 4O4KA 1Z2WA 2WDEA 4ORAA 4I5NC 3IB8A 4UWQA 3C5WC 2QJCA 1M63A 3H68A 3PSOA 4NZVA 2KKNA 1QHWA 4MP0A 2NPPC 2WDDA 4MOYA 4O43A 4ZVZA 5JPEA 5J28A 4TUGA 3H62B 1G5BA 5EQVA 4YKEA 4Q7FA 4KKZA 2QFRA 5F3WA 2NYMC 1XZWA 2HYPA 2P6BA 2ZBMA 3ICFA 4LTYA 3H63A 3EGGA 1W24A 2NYLC 3AUZA 4LACC 4O24A 3H60A 4H1SA 4JA7A 1OI8A 3GVEA 3KBPA 3H64A 3ZU0A 1S3MA 2BCDA 2BQ8X 5IOHA 1S8EA 3DSCA 3H69A 2AHDA 4V0WA 3K7WC 4DHLA 4WWLA 3IB7A 3TGHA 3T1IA 1WARA 4OR9A 1T71A 3RQZA 3RL5A 4DSYA 2O8GA 4UT2A 5INBA 2USHA 2GJUA 3FGAC 3E7AA 4FBQA 4H2FA 3DW8C 4G9JA 4J6OA 3H61A 2Z1AA 4IYPC 1QFCA 3THNA 2Q8UA 1FJMA 4M0VA 1JK7A 3EGHA 1IT6A 4HD0A 2HY1A 4XPNA 3ZTVA 3CK2A 4LU9A 3RL4A 3HVQA 4ORBA 4ZX2A 3D03A 3QFMA 3K7VC 1XM7A 1OIDA 2Z72A 3H67A 5GTUA 5HPEA 1HP1A 2HYOA 2WDFA 1OIEA 3QG5C 4FBKA 4UT3A 4I5LC 1HPUA 4H2IA 2A22A 2IE3C 5DNYA 4JA9A 3QFOA 3AV0A 1S3NA 3IVEA 2QFPA 3C9FA 3P71C 2DXNA 3IVDA 4F0ZA 2ZO9B 1MF8A 2NXFA 4MOVA 3E7BA 3FLOA 2BDXA 3QFNA 4ORCA 2YEQA 2IE4C 1AUIA 3N5UA 1WAO1 3LL8A 2R17A 1TCOA 4KBPA 4V0VA 3PSNA 1S70A 4FBWA 4UT3B 4TUIA 1KBPA 2ZOAA 2WDCA 1UF3A 1USHA 3DSDA 1Z2XA 5C1VA 3THOB 1V73A 3QFKA 2DFJA 4V0XA 1U32A 1S3LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JPF A;  2XMO A;  4FCX A;  2IAE C;  1NNW A;  3JYF A;  1HO5 A;  1UTE A;  2Z06 A;  1SU1 A;  4O5G A;  4H2B A;  1II7 A;  4B2O A;  4IL1 A;  2YVT A;  2JOG A;  5JJT A;  5B8I A;  3V4Y A;  1T70 A;  2CV9 A;  4H2G A;  1S95 A;  3RL3 A;  4DT2 A;  2O8A A;  3H66 A;  4H1Y P;  4O4K A;  1Z2W A;  2WDE A;  4ORA A;  4I5N C;  3IB8 A;  4UWQ A;  3C5W C;  2QJC A;  1M63 A;  3H68 A;  3PSO A;  4NZV A;  2KKN A;  1QHW A;  4MP0 A;  2NPP C;  2WDD A;  4MOY A;  4O43 A;  4ZVZ A;  5JPE A;  5J28 A;  4TUG A;  3H62 B;  1G5B A;  5EQV A;  4YKE A;  4Q7F A;  4KKZ A;  2QFR A;  5F3W A;  2NYM C;  1XZW A;  2HYP A;  2P6B A;  2ZBM A;  3ICF A;  4LTY A;  3H63 A;  3EGG A;  1W24 A;  2NYL C;  3AUZ A;  4LAC C;  4O24 A;  3H60 A;  4H1S A;  4JA7 A;  1OI8 A;  3GVE A;  3KBP A;  3H64 A;  3ZU0 A;  1S3M A;  2BCD A;  2BQ8 X;  5IOH A;  1S8E A;  3DSC A;  3H69 A;  2AHD A;  4V0W A;  3K7W C;  4DHL A;  4WWL A;  3IB7 A;  3TGH A;  3T1I A;  1WAR A;  4OR9 A;  1T71 A;  3RQZ A;  3RL5 A;  4DSY A;  2O8G A;  4UT2 A;  5INB A;  2USH A;  2GJU A;  3FGA C;  3E7A A;  4FBQ A;  4H2F A;  3DW8 C;  4G9J A;  4J6O A;  3H61 A;  2Z1A A;  4IYP C;  1QFC A;  3THN A;  2Q8U A;  1FJM A;  4M0V A;  1JK7 A;  3EGH A;  1IT6 A;  4HD0 A;  2HY1 A;  4XPN A;  3ZTV A;  3CK2 A;  4LU9 A;  3RL4 A;  3HVQ A;  4ORB A;  4ZX2 A;  3QFM A;  3K7V C;  1XM7 A;  1OID A;  2Z72 A;  3H67 A;  5GTU A;  5HPE A;  1HP1 A;  2HYO A;  2WDF A;  1OIE A;  3QG5 C;  4FBK A;  4UT3 A;  4I5L C;  1HPU A;  4H2I A;  2A22 A;  2IE3 C;  5DNY A;  4JA9 A;  3QFO A;  3AV0 A;  1S3N A;  3IVE A;  2QFP A;  3C9F A;  3P71 C;  3IVD A;  4F0Z A;  1MF8 A;  2NXF A;  4MOV A;  3E7B A;  2BDX A;  3QFN A;  4ORC A;  2IE4 C;  1AUI A;  3N5U A;  1WAO 1;  3LL8 A;  2R17 A;  1TCO A;  4KBP A;  4V0V A;  3PSN A;  1S70 A;  4FBW A;  4UT3 B;  4TUI A;  1KBP A;  2WDC A;  1UF3 A;  1USH A;  3DSD A;  1Z2X A;  5C1V A;  3THO B;  1V73 A;  3QFK A;  2DFJ A;  4V0X A;  1U32 A;  1S3L A; 
#chains in the Genus database with same CATH topology
 5JPF A;  2XMO A;  3E0J A;  2IAE C;  4FCX A;  1NNW A;  3JYF A;  1HO5 A;  1UTE A;  2Z06 A;  1SU1 A;  4O5G A;  4H2B A;  1II7 A;  4B2O A;  4IL1 A;  2YVT A;  2JOG A;  5JJT A;  5B8I A;  3V4Y A;  1T70 A;  2CV9 A;  4H2G A;  1S95 A;  3RL3 A;  2DXL A;  4DT2 A;  2O8A A;  3H66 A;  4H1Y P;  4O4K A;  1Z2W A;  2WDE A;  4ORA A;  4I5N C;  3IB8 A;  4UWQ A;  3C5W C;  2QJC A;  1M63 A;  3H68 A;  3PSO A;  4NZV A;  2KKN A;  1QHW A;  4MP0 A;  2NPP C;  2WDD A;  4MOY A;  4O43 A;  4ZVZ A;  5JPE A;  5J28 A;  4TUG A;  3H62 B;  1G5B A;  5EQV A;  4YKE A;  4Q7F A;  4KKZ A;  2QFR A;  5F3W A;  2NYM C;  1XZW A;  2HYP A;  2P6B A;  2ZBM A;  3ICF A;  4LTY A;  3H63 A;  3EGG A;  1W24 A;  2NYL C;  3AUZ A;  4LAC C;  4O24 A;  3H60 A;  4H1S A;  4JA7 A;  1OI8 A;  3GVE A;  3KBP A;  3H64 A;  3ZU0 A;  1S3M A;  2BCD A;  2BQ8 X;  5IOH A;  1S8E A;  3DSC A;  3H69 A;  2AHD A;  4V0W A;  3K7W C;  4DHL A;  4WWL A;  3IB7 A;  3TGH A;  3T1I A;  1WAR A;  4OR9 A;  1T71 A;  3RQZ A;  3RL5 A;  4DSY A;  2O8G A;  4UT2 A;  5INB A;  2USH A;  2GJU A;  3FGA C;  3E7A A;  4FBQ A;  4H2F A;  3DW8 C;  4G9J A;  4J6O A;  3H61 A;  2Z1A A;  4IYP C;  1QFC A;  3THN A;  2Q8U A;  1FJM A;  4M0V A;  1JK7 A;  3EGH A;  1IT6 A;  4HD0 A;  2HY1 A;  4XPN A;  3ZTV A;  3CK2 A;  4LU9 A;  3RL4 A;  3HVQ A;  4ORB A;  4ZX2 A;  3D03 A;  3QFM A;  3K7V C;  1XM7 A;  1OID A;  2Z72 A;  3H67 A;  5GTU A;  5HPE A;  1HP1 A;  2HYO A;  2WDF A;  1OIE A;  3QG5 C;  4FBK A;  4UT3 A;  4I5L C;  1HPU A;  4H2I A;  2A22 A;  2IE3 C;  5DNY A;  4JA9 A;  3QFO A;  3AV0 A;  1S3N A;  3IVE A;  2QFP A;  3C9F A;  3P71 C;  2DXN A;  3IVD A;  4F0Z A;  2ZO9 B;  1MF8 A;  2NXF A;  4MOV A;  3E7B A;  3FLO A;  2BDX A;  3QFN A;  4ORC A;  2YEQ A;  2IE4 C;  1AUI A;  3N5U A;  1WAO 1;  3LL8 A;  2R17 A;  1TCO A;  4KBP A;  4V0V A;  3PSN A;  1S70 A;  4FBW A;  4UT3 B;  4TUI A;  1KBP A;  2ZOA A;  2WDC A;  1UF3 A;  1USH A;  3DSD A;  1Z2X A;  5C1V A;  3THO B;  1V73 A;  3QFK A;  2DFJ A;  4V0X A;  1U32 A;  1S3L A; 
#chains in the Genus database with same CATH homology
 5JPF A;  2XMO A;  3E0J A;  2IAE C;  4FCX A;  1NNW A;  3JYF A;  1HO5 A;  1UTE A;  2Z06 A;  1SU1 A;  4O5G A;  4H2B A;  1II7 A;  4B2O A;  4IL1 A;  2YVT A;  2JOG A;  5JJT A;  5B8I A;  3V4Y A;  1T70 A;  2CV9 A;  4H2G A;  1S95 A;  3RL3 A;  2DXL A;  4DT2 A;  2O8A A;  3H66 A;  4H1Y P;  4O4K A;  1Z2W A;  2WDE A;  4ORA A;  4I5N C;  3IB8 A;  4UWQ A;  3C5W C;  2QJC A;  1M63 A;  3H68 A;  3PSO A;  4NZV A;  2KKN A;  1QHW A;  4MP0 A;  2NPP C;  2WDD A;  4MOY A;  4O43 A;  4ZVZ A;  5JPE A;  5J28 A;  4TUG A;  3H62 B;  1G5B A;  5EQV A;  4YKE A;  4Q7F A;  4KKZ A;  2QFR A;  5F3W A;  2NYM C;  1XZW A;  2HYP A;  2P6B A;  2ZBM A;  3ICF A;  4LTY A;  3H63 A;  3EGG A;  1W24 A;  2NYL C;  3AUZ A;  4LAC C;  4O24 A;  3H60 A;  4H1S A;  4JA7 A;  1OI8 A;  3GVE A;  3KBP A;  3H64 A;  3ZU0 A;  1S3M A;  2BCD A;  2BQ8 X;  5IOH A;  1S8E A;  3DSC A;  3H69 A;  2AHD A;  4V0W A;  3K7W C;  4DHL A;  4WWL A;  3IB7 A;  3TGH A;  3T1I A;  1WAR A;  4OR9 A;  1T71 A;  3RQZ A;  3RL5 A;  4DSY A;  2O8G A;  4UT2 A;  5INB A;  2USH A;  2GJU A;  3FGA C;  3E7A A;  4FBQ A;  4H2F A;  3DW8 C;  4G9J A;  4J6O A;  3H61 A;  2Z1A A;  4IYP C;  1QFC A;  3THN A;  2Q8U A;  1FJM A;  4M0V A;  1JK7 A;  3EGH A;  1IT6 A;  4HD0 A;  2HY1 A;  4XPN A;  3ZTV A;  3CK2 A;  4LU9 A;  3RL4 A;  3HVQ A;  4ORB A;  4ZX2 A;  3D03 A;  3QFM A;  3K7V C;  1XM7 A;  1OID A;  2Z72 A;  3H67 A;  5GTU A;  5HPE A;  1HP1 A;  2HYO A;  2WDF A;  1OIE A;  3QG5 C;  4FBK A;  4UT3 A;  4I5L C;  1HPU A;  4H2I A;  2A22 A;  2IE3 C;  5DNY A;  4JA9 A;  3QFO A;  3AV0 A;  1S3N A;  3IVE A;  2QFP A;  3C9F A;  3P71 C;  2DXN A;  3IVD A;  4F0Z A;  2ZO9 B;  1MF8 A;  2NXF A;  4MOV A;  3E7B A;  3FLO A;  2BDX A;  3QFN A;  4ORC A;  2YEQ A;  2IE4 C;  1AUI A;  3N5U A;  1WAO 1;  3LL8 A;  2R17 A;  1TCO A;  4KBP A;  4V0V A;  3PSN A;  1S70 A;  4FBW A;  4UT3 B;  4TUI A;  1KBP A;  2ZOA A;  2WDC A;  1UF3 A;  1USH A;  3DSD A;  1Z2X A;  5C1V A;  3THO B;  1V73 A;  3QFK A;  2DFJ A;  4V0X A;  1U32 A;  1S3L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...