2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
4F0ZA 2DFJA 1OIDA 1UTEA 3ICFA 4KKZA 4FBQA 3E7BA 3DSCA 3GVEA 2NYMC 3RL4A 4OR9A 2IAEC 1NNWA 1XZWA 4IYPC 3H64A 1USHA 4WWLA 4MOVA 4G9JA 1QHWA 4JA7A 2A22A 1S8EA 1HO5A 3ZU0A 3HVQA 2Z06A 3E7AA 2HYPA 1T71A 1OIEA 3LL8A 4H2BA 3PSOA 4H1SA 3C9FA 1QFCA 1FJMA 3RL5A 3THOB 4FBKA 3N5UA 2O8AA 3AV0A 4ORBA 1WARA 4V0WA 4UT3B 4ZX2A 4HD0A 3EGHA 2USHA 3QFNA 1T70A 5DNYA 1W24A 2O8GA 1S3NA 3KBPA 4O4KA 1UF3A 3H62B 3IVEA 4I5LC 4LACC 3RL3A 3C5WC 4KBPA 4ORAA 3EGGA 4V0XA 3THNA 4DT2A 3IB8A 4UWQA 2QFRA 4NZVA 5J28A 4ZVZA 5B8IA 2HY1A 2BQ8X 1M63A 2P6BA 1Z2WA 1Z2XA 3IB7A 1MF8A 4O43A 2YVTA 3DSDA 3FGAC 1JK7A 3DW8C 4DHLA 1SU1A 4H2FA 3QG5C 1G5BA 4H2GA 2QJCA 2GJUA 1AUIA 1V73A 3K7VC 5F3WA 1HPUA 2Z72A 4FBWA 1OI8A 4XPNA 4V0VA 5JJTA 4DSYA 4Q7FA 4ORCA 2WDEA 1WAO1 3H68A 2QFPA 4M0VA 2ZBMA 2NXFA 2AHDA 3H61A 4FCXA 3V4YA 4TUGA 3TGHA 2KKNA 2IE4C 1S70A 2WDCA 1S3MA 4H2IA 4B2OA 3H60A 1HP1A 1II7A 2BCDA 3H69A 4I5NC 4O24A 4YKEA 5JPEA 2JOGA 3H63A 2NPPC 3QFMA 2BDXA 5EQVA 4MP0A 4JA9A 1KBPA 1U32A 3CK2A 3ZTVA 3QFKA 2IE3C 3K7WC 5IOHA 4UT3A 3P71C 5GTUA 3IVDA 3H67A 2Z1AA 3RQZA 1S95A 2CV9A 4UT2A 4O5GA 4H1YP 2WDFA 3H66A 3T1IA 3PSNA 2NYLC 3QFOA 2HYOA 1XM7A 4LU9A 2Q8UA 5C1VA 3JYFA 5JPFA 2XMOA 2R17A 4TUIA 1TCOA 3AUZA 4MOYA 4LTYA 1S3LA 4IL1A 5INBA 1IT6A 2WDDA 4J6OA 5HPEA
chains in the Genus database with same CATH superfamily
4F0ZA 2DFJA 1OIDA 1UTEA 3ICFA 4KKZA 4FBQA 3E7BA 3DSCA 3GVEA 2NYMC 3RL4A 4OR9A 2IAEC 1NNWA 1XZWA 4IYPC 3H64A 1USHA 4WWLA 4MOVA 4G9JA 1QHWA 4JA7A 2A22A 1S8EA 1HO5A 3ZU0A 3HVQA 3FLOA 2Z06A 3E7AA 2HYPA 1T71A 1OIEA 3LL8A 4H2BA 3PSOA 4H1SA 3C9FA 1QFCA 1FJMA 3RL5A 3THOB 4FBKA 3N5UA 2O8AA 3AV0A 4ORBA 2DXLA 1WARA 4V0WA 4UT3B 3D03A 4ZX2A 4HD0A 3EGHA 2USHA 3QFNA 1T70A 5DNYA 1W24A 2O8GA 2YEQA 1S3NA 3KBPA 4O4KA 1UF3A 3H62B 3IVEA 4I5LC 4LACC 3RL3A 3C5WC 4KBPA 4ORAA 3EGGA 4V0XA 3THNA 4DT2A 3IB8A 4UWQA 2QFRA 4NZVA 5J28A 4ZVZA 5B8IA 2HY1A 2BQ8X 1M63A 2P6BA 1Z2WA 1Z2XA 3IB7A 1MF8A 4O43A 2YVTA 3DSDA 3FGAC 1JK7A 3DW8C 4DHLA 1SU1A 4H2FA 3QG5C 1G5BA 4H2GA 2QJCA 2GJUA 1AUIA 1V73A 3K7VC 5F3WA 1HPUA 2Z72A 4FBWA 1OI8A 4XPNA 4V0VA 5JJTA 4DSYA 4Q7FA 4ORCA 2WDEA 1WAO1 3H68A 2QFPA 2ZO9B 4M0VA 2ZBMA 2NXFA 2AHDA 3H61A 4FCXA 3V4YA 4TUGA 3E0JA 3TGHA 2KKNA 2IE4C 1S70A 2WDCA 1S3MA 4H2IA 4B2OA 3H60A 1HP1A 1II7A 2BCDA 3H69A 4I5NC 4O24A 4YKEA 5JPEA 2JOGA 3H63A 2NPPC 3QFMA 2BDXA 5EQVA 4MP0A 4JA9A 1KBPA 1U32A 3CK2A 3ZTVA 3QFKA 2IE3C 3K7WC 5IOHA 4UT3A 3P71C 5GTUA 3IVDA 3H67A 2Z1AA 3RQZA 1S95A 2CV9A 4UT2A 4O5GA 4H1YP 2DXNA 2WDFA 3H66A 3T1IA 3PSNA 2NYLC 3QFOA 2HYOA 1XM7A 4LU9A 2Q8UA 5C1VA 3JYFA 5JPFA 2XMOA 2R17A 4TUIA 1TCOA 3AUZA 4MOYA 4LTYA 1S3LA 2ZOAA 4IL1A 5INBA 1IT6A 2WDDA 4J6OA 5HPEA
chains in the Genus database with same CATH topology
4F0ZA 2DFJA 1OIDA 1UTEA 3ICFA 4KKZA 4FBQA 3E7BA 3DSCA 3GVEA 2NYMC 3RL4A 4OR9A 2IAEC 1NNWA 1XZWA 4IYPC 3H64A 1USHA 4WWLA 4MOVA 4G9JA 1QHWA 4JA7A 2A22A 1S8EA 1HO5A 3ZU0A 3HVQA 3FLOA 2Z06A 3E7AA 2HYPA 1T71A 1OIEA 3LL8A 4H2BA 3PSOA 4H1SA 3C9FA 1QFCA 1FJMA 3RL5A 3THOB 4FBKA 3N5UA 2O8AA 3AV0A 4ORBA 2DXLA 1WARA 4V0WA 4UT3B 3D03A 4ZX2A 4HD0A 3EGHA 2USHA 3QFNA 1T70A 5DNYA 1W24A 2O8GA 2YEQA 1S3NA 3KBPA 4O4KA 1UF3A 3H62B 3IVEA 4I5LC 4LACC 3RL3A 3C5WC 4KBPA 4ORAA 3EGGA 4V0XA 3THNA 4DT2A 3IB8A 4UWQA 2QFRA 4NZVA 5J28A 4ZVZA 5B8IA 2HY1A 2BQ8X 1M63A 2P6BA 1Z2WA 1Z2XA 3IB7A 1MF8A 4O43A 2YVTA 3DSDA 3FGAC 1JK7A 3DW8C 4DHLA 1SU1A 4H2FA 3QG5C 1G5BA 4H2GA 2QJCA 2GJUA 1AUIA 1V73A 3K7VC 5F3WA 1HPUA 2Z72A 4FBWA 1OI8A 4XPNA 4V0VA 5JJTA 4DSYA 4Q7FA 4ORCA 2WDEA 1WAO1 3H68A 2QFPA 2ZO9B 4M0VA 2ZBMA 2NXFA 2AHDA 3H61A 4FCXA 3V4YA 4TUGA 3E0JA 3TGHA 2KKNA 2IE4C 1S70A 2WDCA 1S3MA 4H2IA 4B2OA 3H60A 1HP1A 1II7A 2BCDA 3H69A 4I5NC 4O24A 4YKEA 5JPEA 2JOGA 3H63A 2NPPC 3QFMA 2BDXA 5EQVA 4MP0A 4JA9A 1KBPA 1U32A 3CK2A 3ZTVA 3QFKA 2IE3C 3K7WC 5IOHA 4UT3A 3P71C 5GTUA 3IVDA 3H67A 2Z1AA 3RQZA 1S95A 2CV9A 4UT2A 4O5GA 4H1YP 2DXNA 2WDFA 3H66A 3T1IA 3PSNA 2NYLC 3QFOA 2HYOA 1XM7A 4LU9A 2Q8UA 5C1VA 3JYFA 5JPFA 2XMOA 2R17A 4TUIA 1TCOA 3AUZA 4MOYA 4LTYA 1S3LA 2ZOAA 4IL1A 5INBA 1IT6A 2WDDA 4J6OA 5HPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0Z A;  2DFJ A;  1OID A;  1UTE A;  3ICF A;  4KKZ A;  4FBQ A;  3E7B A;  3DSC A;  3GVE A;  2NYM C;  3RL4 A;  4OR9 A;  2IAE C;  1NNW A;  1XZW A;  4IYP C;  3H64 A;  1USH A;  4WWL A;  4MOV A;  4G9J A;  1QHW A;  4JA7 A;  2A22 A;  1S8E A;  1HO5 A;  3ZU0 A;  3HVQ A;  2Z06 A;  3E7A A;  2HYP A;  1T71 A;  1OIE A;  3LL8 A;  4H2B A;  3PSO A;  4H1S A;  3C9F A;  1QFC A;  1FJM A;  3RL5 A;  3THO B;  4FBK A;  3N5U A;  2O8A A;  3AV0 A;  4ORB A;  1WAR A;  4V0W A;  4UT3 B;  4ZX2 A;  4HD0 A;  3EGH A;  2USH A;  3QFN A;  1T70 A;  5DNY A;  1W24 A;  2O8G A;  1S3N A;  3KBP A;  4O4K A;  1UF3 A;  3H62 B;  3IVE A;  4I5L C;  4LAC C;  3RL3 A;  3C5W C;  4KBP A;  4ORA A;  3EGG A;  4V0X A;  3THN A;  4DT2 A;  3IB8 A;  4UWQ A;  2QFR A;  4NZV A;  5J28 A;  4ZVZ A;  5B8I A;  2HY1 A;  2BQ8 X;  1M63 A;  2P6B A;  1Z2W A;  1Z2X A;  3IB7 A;  1MF8 A;  4O43 A;  2YVT A;  3DSD A;  3FGA C;  1JK7 A;  3DW8 C;  4DHL A;  1SU1 A;  4H2F A;  3QG5 C;  1G5B A;  4H2G A;  2QJC A;  2GJU A;  1AUI A;  1V73 A;  3K7V C;  5F3W A;  1HPU A;  2Z72 A;  4FBW A;  1OI8 A;  4XPN A;  4V0V A;  5JJT A;  4DSY A;  4Q7F A;  4ORC A;  2WDE A;  1WAO 1;  3H68 A;  2QFP A;  4M0V A;  2ZBM A;  2NXF A;  2AHD A;  3H61 A;  4FCX A;  3V4Y A;  4TUG A;  3TGH A;  2KKN A;  2IE4 C;  1S70 A;  2WDC A;  1S3M A;  4H2I A;  4B2O A;  3H60 A;  1HP1 A;  1II7 A;  2BCD A;  3H69 A;  4I5N C;  4O24 A;  4YKE A;  5JPE A;  2JOG A;  3H63 A;  2NPP C;  3QFM A;  2BDX A;  5EQV A;  4MP0 A;  4JA9 A;  1KBP A;  1U32 A;  3CK2 A;  3ZTV A;  3QFK A;  2IE3 C;  3K7W C;  5IOH A;  4UT3 A;  3P71 C;  5GTU A;  3IVD A;  3H67 A;  2Z1A A;  3RQZ A;  1S95 A;  2CV9 A;  4UT2 A;  4O5G A;  4H1Y P;  2WDF A;  3H66 A;  3T1I A;  3PSN A;  2NYL C;  3QFO A;  2HYO A;  1XM7 A;  4LU9 A;  2Q8U A;  5C1V A;  3JYF A;  5JPF A;  2XMO A;  2R17 A;  4TUI A;  1TCO A;  3AUZ A;  4MOY A;  4LTY A;  1S3L A;  4IL1 A;  5INB A;  1IT6 A;  2WDD A;  4J6O A;  5HPE A; 
#chains in the Genus database with same CATH topology
 4F0Z A;  2DFJ A;  1OID A;  1UTE A;  3ICF A;  4KKZ A;  4FBQ A;  3E7B A;  3DSC A;  3GVE A;  2NYM C;  3RL4 A;  4OR9 A;  2IAE C;  1NNW A;  1XZW A;  4IYP C;  3H64 A;  1USH A;  4WWL A;  4MOV A;  4G9J A;  1QHW A;  4JA7 A;  2A22 A;  1S8E A;  1HO5 A;  3ZU0 A;  3HVQ A;  3FLO A;  2Z06 A;  3E7A A;  2HYP A;  1T71 A;  1OIE A;  3LL8 A;  4H2B A;  3PSO A;  4H1S A;  3C9F A;  1QFC A;  1FJM A;  3RL5 A;  3THO B;  4FBK A;  3N5U A;  2O8A A;  3AV0 A;  4ORB A;  2DXL A;  1WAR A;  4V0W A;  4UT3 B;  3D03 A;  4ZX2 A;  4HD0 A;  3EGH A;  2USH A;  3QFN A;  1T70 A;  5DNY A;  1W24 A;  2O8G A;  2YEQ A;  1S3N A;  3KBP A;  4O4K A;  1UF3 A;  3H62 B;  3IVE A;  4I5L C;  4LAC C;  3RL3 A;  3C5W C;  4KBP A;  4ORA A;  3EGG A;  4V0X A;  3THN A;  4DT2 A;  3IB8 A;  4UWQ A;  2QFR A;  4NZV A;  5J28 A;  4ZVZ A;  5B8I A;  2HY1 A;  2BQ8 X;  1M63 A;  2P6B A;  1Z2W A;  1Z2X A;  3IB7 A;  1MF8 A;  4O43 A;  2YVT A;  3DSD A;  3FGA C;  1JK7 A;  3DW8 C;  4DHL A;  1SU1 A;  4H2F A;  3QG5 C;  1G5B A;  4H2G A;  2QJC A;  2GJU A;  1AUI A;  1V73 A;  3K7V C;  5F3W A;  1HPU A;  2Z72 A;  4FBW A;  1OI8 A;  4XPN A;  4V0V A;  5JJT A;  4DSY A;  4Q7F A;  4ORC A;  2WDE A;  1WAO 1;  3H68 A;  2QFP A;  2ZO9 B;  4M0V A;  2ZBM A;  2NXF A;  2AHD A;  3H61 A;  4FCX A;  3V4Y A;  4TUG A;  3E0J A;  3TGH A;  2KKN A;  2IE4 C;  1S70 A;  2WDC A;  1S3M A;  4H2I A;  4B2O A;  3H60 A;  1HP1 A;  1II7 A;  2BCD A;  3H69 A;  4I5N C;  4O24 A;  4YKE A;  5JPE A;  2JOG A;  3H63 A;  2NPP C;  3QFM A;  2BDX A;  5EQV A;  4MP0 A;  4JA9 A;  1KBP A;  1U32 A;  3CK2 A;  3ZTV A;  3QFK A;  2IE3 C;  3K7W C;  5IOH A;  4UT3 A;  3P71 C;  5GTU A;  3IVD A;  3H67 A;  2Z1A A;  3RQZ A;  1S95 A;  2CV9 A;  4UT2 A;  4O5G A;  4H1Y P;  2DXN A;  2WDF A;  3H66 A;  3T1I A;  3PSN A;  2NYL C;  3QFO A;  2HYO A;  1XM7 A;  4LU9 A;  2Q8U A;  5C1V A;  3JYF A;  5JPF A;  2XMO A;  2R17 A;  4TUI A;  1TCO A;  3AUZ A;  4MOY A;  4LTY A;  1S3L A;  2ZOA A;  4IL1 A;  5INB A;  1IT6 A;  2WDD A;  4J6O A;  5HPE A; 
#chains in the Genus database with same CATH homology
 4F0Z A;  2DFJ A;  1OID A;  1UTE A;  3ICF A;  4KKZ A;  4FBQ A;  3E7B A;  3DSC A;  3GVE A;  2NYM C;  3RL4 A;  4OR9 A;  2IAE C;  1NNW A;  1XZW A;  4IYP C;  3H64 A;  1USH A;  4WWL A;  4MOV A;  4G9J A;  1QHW A;  4JA7 A;  2A22 A;  1S8E A;  1HO5 A;  3ZU0 A;  3HVQ A;  3FLO A;  2Z06 A;  3E7A A;  2HYP A;  1T71 A;  1OIE A;  3LL8 A;  4H2B A;  3PSO A;  4H1S A;  3C9F A;  1QFC A;  1FJM A;  3RL5 A;  3THO B;  4FBK A;  3N5U A;  2O8A A;  3AV0 A;  4ORB A;  2DXL A;  1WAR A;  4V0W A;  4UT3 B;  3D03 A;  4ZX2 A;  4HD0 A;  3EGH A;  2USH A;  3QFN A;  1T70 A;  5DNY A;  1W24 A;  2O8G A;  2YEQ A;  1S3N A;  3KBP A;  4O4K A;  1UF3 A;  3H62 B;  3IVE A;  4I5L C;  4LAC C;  3RL3 A;  3C5W C;  4KBP A;  4ORA A;  3EGG A;  4V0X A;  3THN A;  4DT2 A;  3IB8 A;  4UWQ A;  2QFR A;  4NZV A;  5J28 A;  4ZVZ A;  5B8I A;  2HY1 A;  2BQ8 X;  1M63 A;  2P6B A;  1Z2W A;  1Z2X A;  3IB7 A;  1MF8 A;  4O43 A;  2YVT A;  3DSD A;  3FGA C;  1JK7 A;  3DW8 C;  4DHL A;  1SU1 A;  4H2F A;  3QG5 C;  1G5B A;  4H2G A;  2QJC A;  2GJU A;  1AUI A;  1V73 A;  3K7V C;  5F3W A;  1HPU A;  2Z72 A;  4FBW A;  1OI8 A;  4XPN A;  4V0V A;  5JJT A;  4DSY A;  4Q7F A;  4ORC A;  2WDE A;  1WAO 1;  3H68 A;  2QFP A;  2ZO9 B;  4M0V A;  2ZBM A;  2NXF A;  2AHD A;  3H61 A;  4FCX A;  3V4Y A;  4TUG A;  3E0J A;  3TGH A;  2KKN A;  2IE4 C;  1S70 A;  2WDC A;  1S3M A;  4H2I A;  4B2O A;  3H60 A;  1HP1 A;  1II7 A;  2BCD A;  3H69 A;  4I5N C;  4O24 A;  4YKE A;  5JPE A;  2JOG A;  3H63 A;  2NPP C;  3QFM A;  2BDX A;  5EQV A;  4MP0 A;  4JA9 A;  1KBP A;  1U32 A;  3CK2 A;  3ZTV A;  3QFK A;  2IE3 C;  3K7W C;  5IOH A;  4UT3 A;  3P71 C;  5GTU A;  3IVD A;  3H67 A;  2Z1A A;  3RQZ A;  1S95 A;  2CV9 A;  4UT2 A;  4O5G A;  4H1Y P;  2DXN A;  2WDF A;  3H66 A;  3T1I A;  3PSN A;  2NYL C;  3QFO A;  2HYO A;  1XM7 A;  4LU9 A;  2Q8U A;  5C1V A;  3JYF A;  5JPF A;  2XMO A;  2R17 A;  4TUI A;  1TCO A;  3AUZ A;  4MOY A;  4LTY A;  1S3L A;  2ZOA A;  4IL1 A;  5INB A;  1IT6 A;  2WDD A;  4J6O A;  5HPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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