2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
2P6BA 3ZTVA 2WDFA 1KBPA 3ICFA 3H61A 2Q8UA 1S70A 4LTYA 2NYLC 3HVQA 1HPUA 1OIDA 3K7WC 3C9FA 2NPPC 4NZVA 4O5GA 4UWQA 1T70A 3RQZA 1G5BA 2GJUA 3H60A 3C5WC 1OIEA 3RL3A 1WAO1 2CV9A 3RL4A 2NYMC 4LACC 4I5NC 4I5LC 1AUIA 4ORBA 4DT2A 1W24A 3JYFA 1Z2XA 3QG5C 2AHDA 1NNWA 4FCXA 2HYOA 2R17A 3PSNA 4KBPA 2USHA 1FJMA 4V0XA 4ORCA 3EGHA 3QFKA 5GTUA 5JPFA 3DW8C 1SU1A 2WDCA 3T1IA 4JA7A 3AV0A 2IE3C 3H63A 5EQVA 2BDXA 4YKEA 1S3MA 4FBQA 3H69A 4H2FA 4H2IA 4H2GA 4J6OA 2DFJA 3H64A 2NXFA 2WDDA 5C1VA 2QJCA 1IT6A 1HP1A 1Z2WA 3V4YA 2A22A 2BCDA 3FGAC 2BQ8X 2QFPA 1II7A 3QFNA 1S95A 4ORAA 4OR9A 3IB7A 3N5UA 1XZWA 3QFOA 4DSYA 3EGGA 4H1YP 4ZX2A 4HD0A 4MOVA 1S3NA 5INBA 1U32A 2Z06A 3CK2A 4V0WA 4XPNA 3TGHA 4ZVZA 3H68A 4H1SA 4UT3B 4MOYA 1WARA 5J28A 1HO5A 2HYPA 4LU9A 2WDEA 1QFCA 2Z72A 1USHA 4MP0A 4WWLA 4B2OA 1S3LA 4IYPC 1OI8A 3ZU0A 5HPEA 2HY1A 3E7BA 2ZBMA 3LL8A 5B8IA 3IVEA 5JPEA 4UT2A 3IVDA 2KKNA 3KBPA 3RL5A 5DNYA 2IE4C 3DSDA 4UT3A 4O24A 1M63A 4O4KA 2O8GA 2O8AA 2QFRA 3P71C 1T71A 4FBKA 4M0VA 3H67A 4JA9A 1V73A 1S8EA 4O43A 3DSCA 3GVEA 1XM7A 3IB8A 4G9JA 5F3WA 3H62B 3AUZA 3PSOA 1UTEA 2YVTA 4H2BA 3THOB 5IOHA 4Q7FA 5JJTA 1JK7A 1TCOA 2JOGA 1QHWA 3H66A 3K7VC 4FBWA 3THNA 4IL1A 2XMOA 4TUGA 4V0VA 3E7AA 1UF3A 3QFMA 1MF8A 4F0ZA 4TUIA 2Z1AA 4KKZA 4DHLA 2IAEC
chains in the Genus database with same CATH superfamily
2P6BA 3ZTVA 2WDFA 1KBPA 3ICFA 3H61A 2Q8UA 1S70A 4LTYA 2NYLC 3HVQA 1HPUA 1OIDA 3K7WC 3C9FA 2NPPC 4NZVA 4O5GA 4UWQA 1T70A 3RQZA 1G5BA 2GJUA 3H60A 3C5WC 1OIEA 3RL3A 1WAO1 2CV9A 3RL4A 2NYMC 4LACC 4I5NC 4I5LC 1AUIA 4ORBA 4DT2A 1W24A 3JYFA 1Z2XA 3QG5C 2AHDA 1NNWA 4FCXA 3FLOA 2HYOA 2R17A 3PSNA 4KBPA 2USHA 1FJMA 4V0XA 2ZOAA 4ORCA 3EGHA 3QFKA 2YEQA 5GTUA 5JPFA 3DW8C 1SU1A 2WDCA 3T1IA 4JA7A 3AV0A 2IE3C 3H63A 5EQVA 2BDXA 4YKEA 1S3MA 4FBQA 3H69A 4H2FA 4H2IA 4H2GA 4J6OA 2DFJA 3H64A 2NXFA 2WDDA 5C1VA 2QJCA 1IT6A 3D03A 1HP1A 1Z2WA 3V4YA 2A22A 2BCDA 3FGAC 2DXLA 2BQ8X 2QFPA 1II7A 3QFNA 1S95A 4ORAA 4OR9A 3IB7A 3N5UA 1XZWA 3QFOA 4DSYA 2ZO9B 2DXNA 3EGGA 4H1YP 4ZX2A 4HD0A 4MOVA 1S3NA 5INBA 1U32A 2Z06A 3CK2A 4V0WA 4XPNA 3TGHA 4ZVZA 3H68A 4H1SA 4UT3B 4MOYA 1WARA 5J28A 1HO5A 2HYPA 4LU9A 2WDEA 1QFCA 2Z72A 1USHA 4MP0A 4WWLA 4B2OA 1S3LA 4IYPC 1OI8A 3ZU0A 5HPEA 2HY1A 3E7BA 2ZBMA 3LL8A 5B8IA 3IVEA 5JPEA 4UT2A 3IVDA 2KKNA 3KBPA 3RL5A 5DNYA 2IE4C 3DSDA 4UT3A 4O24A 1M63A 4O4KA 2O8GA 2O8AA 2QFRA 3P71C 1T71A 4FBKA 4M0VA 3H67A 4JA9A 1V73A 1S8EA 4O43A 3DSCA 3GVEA 1XM7A 3IB8A 4G9JA 5F3WA 3H62B 3AUZA 3PSOA 1UTEA 2YVTA 4H2BA 3THOB 5IOHA 4Q7FA 5JJTA 1JK7A 1TCOA 2JOGA 1QHWA 3H66A 3K7VC 4FBWA 3THNA 4IL1A 2XMOA 4TUGA 4V0VA 3E7AA 1UF3A 3QFMA 1MF8A 4F0ZA 3E0JA 4TUIA 2Z1AA 4KKZA 4DHLA 2IAEC
chains in the Genus database with same CATH topology
2P6BA 3ZTVA 2WDFA 1KBPA 3ICFA 3H61A 2Q8UA 1S70A 4LTYA 2NYLC 3HVQA 1HPUA 1OIDA 3K7WC 3C9FA 2NPPC 4NZVA 4O5GA 4UWQA 1T70A 3RQZA 1G5BA 2GJUA 3H60A 3C5WC 1OIEA 3RL3A 1WAO1 2CV9A 3RL4A 2NYMC 4LACC 4I5NC 4I5LC 1AUIA 4ORBA 4DT2A 1W24A 3JYFA 1Z2XA 3QG5C 2AHDA 1NNWA 4FCXA 3FLOA 2HYOA 2R17A 3PSNA 4KBPA 2USHA 1FJMA 4V0XA 2ZOAA 4ORCA 3EGHA 3QFKA 2YEQA 5GTUA 5JPFA 3DW8C 1SU1A 2WDCA 3T1IA 4JA7A 3AV0A 2IE3C 3H63A 5EQVA 2BDXA 4YKEA 1S3MA 4FBQA 3H69A 4H2FA 4H2IA 4H2GA 4J6OA 2DFJA 3H64A 2NXFA 2WDDA 5C1VA 2QJCA 1IT6A 3D03A 1HP1A 1Z2WA 3V4YA 2A22A 2BCDA 3FGAC 2DXLA 2BQ8X 2QFPA 1II7A 3QFNA 1S95A 4ORAA 4OR9A 3IB7A 3N5UA 1XZWA 3QFOA 4DSYA 2ZO9B 2DXNA 3EGGA 4H1YP 4ZX2A 4HD0A 4MOVA 1S3NA 5INBA 1U32A 2Z06A 3CK2A 4V0WA 4XPNA 3TGHA 4ZVZA 3H68A 4H1SA 4UT3B 4MOYA 1WARA 5J28A 1HO5A 2HYPA 4LU9A 2WDEA 1QFCA 2Z72A 1USHA 4MP0A 4WWLA 4B2OA 1S3LA 4IYPC 1OI8A 3ZU0A 5HPEA 2HY1A 3E7BA 2ZBMA 3LL8A 5B8IA 3IVEA 5JPEA 4UT2A 3IVDA 2KKNA 3KBPA 3RL5A 5DNYA 2IE4C 3DSDA 4UT3A 4O24A 1M63A 4O4KA 2O8GA 2O8AA 2QFRA 3P71C 1T71A 4FBKA 4M0VA 3H67A 4JA9A 1V73A 1S8EA 4O43A 3DSCA 3GVEA 1XM7A 3IB8A 4G9JA 5F3WA 3H62B 3AUZA 3PSOA 1UTEA 2YVTA 4H2BA 3THOB 5IOHA 4Q7FA 5JJTA 1JK7A 1TCOA 2JOGA 1QHWA 3H66A 3K7VC 4FBWA 3THNA 4IL1A 2XMOA 4TUGA 4V0VA 3E7AA 1UF3A 3QFMA 1MF8A 4F0ZA 3E0JA 4TUIA 2Z1AA 4KKZA 4DHLA 2IAEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6B A;  3ZTV A;  2WDF A;  1KBP A;  3ICF A;  3H61 A;  2Q8U A;  1S70 A;  4LTY A;  2NYL C;  3HVQ A;  1HPU A;  1OID A;  3K7W C;  3C9F A;  2NPP C;  4NZV A;  4O5G A;  4UWQ A;  1T70 A;  3RQZ A;  1G5B A;  2GJU A;  3H60 A;  3C5W C;  1OIE A;  3RL3 A;  1WAO 1;  2CV9 A;  3RL4 A;  2NYM C;  4LAC C;  4I5N C;  4I5L C;  1AUI A;  4ORB A;  4DT2 A;  1W24 A;  3JYF A;  1Z2X A;  3QG5 C;  2AHD A;  1NNW A;  4FCX A;  2HYO A;  2R17 A;  3PSN A;  4KBP A;  2USH A;  1FJM A;  4V0X A;  4ORC A;  3EGH A;  3QFK A;  5GTU A;  5JPF A;  3DW8 C;  1SU1 A;  2WDC A;  3T1I A;  4JA7 A;  3AV0 A;  2IE3 C;  3H63 A;  5EQV A;  2BDX A;  4YKE A;  1S3M A;  4FBQ A;  3H69 A;  4H2F A;  4H2I A;  4H2G A;  4J6O A;  2DFJ A;  3H64 A;  2NXF A;  2WDD A;  5C1V A;  2QJC A;  1IT6 A;  1HP1 A;  1Z2W A;  3V4Y A;  2A22 A;  2BCD A;  3FGA C;  2BQ8 X;  2QFP A;  1II7 A;  3QFN A;  1S95 A;  4ORA A;  4OR9 A;  3IB7 A;  3N5U A;  1XZW A;  3QFO A;  4DSY A;  3EGG A;  4H1Y P;  4ZX2 A;  4HD0 A;  4MOV A;  1S3N A;  5INB A;  1U32 A;  2Z06 A;  3CK2 A;  4V0W A;  4XPN A;  3TGH A;  4ZVZ A;  3H68 A;  4H1S A;  4UT3 B;  4MOY A;  1WAR A;  5J28 A;  1HO5 A;  2HYP A;  4LU9 A;  2WDE A;  1QFC A;  2Z72 A;  1USH A;  4MP0 A;  4WWL A;  4B2O A;  1S3L A;  4IYP C;  1OI8 A;  3ZU0 A;  5HPE A;  2HY1 A;  3E7B A;  2ZBM A;  3LL8 A;  5B8I A;  3IVE A;  5JPE A;  4UT2 A;  3IVD A;  2KKN A;  3KBP A;  3RL5 A;  5DNY A;  2IE4 C;  3DSD A;  4UT3 A;  4O24 A;  1M63 A;  4O4K A;  2O8G A;  2O8A A;  2QFR A;  3P71 C;  1T71 A;  4FBK A;  4M0V A;  3H67 A;  4JA9 A;  1V73 A;  1S8E A;  4O43 A;  3DSC A;  3GVE A;  1XM7 A;  3IB8 A;  4G9J A;  5F3W A;  3H62 B;  3AUZ A;  3PSO A;  1UTE A;  2YVT A;  4H2B A;  3THO B;  5IOH A;  4Q7F A;  5JJT A;  1JK7 A;  1TCO A;  2JOG A;  1QHW A;  3H66 A;  3K7V C;  4FBW A;  3THN A;  4IL1 A;  2XMO A;  4TUG A;  4V0V A;  3E7A A;  1UF3 A;  3QFM A;  1MF8 A;  4F0Z A;  4TUI A;  2Z1A A;  4KKZ A;  4DHL A;  2IAE C; 
#chains in the Genus database with same CATH topology
 2P6B A;  3ZTV A;  2WDF A;  1KBP A;  3ICF A;  3H61 A;  2Q8U A;  1S70 A;  4LTY A;  2NYL C;  3HVQ A;  1HPU A;  1OID A;  3K7W C;  3C9F A;  2NPP C;  4NZV A;  4O5G A;  4UWQ A;  1T70 A;  3RQZ A;  1G5B A;  2GJU A;  3H60 A;  3C5W C;  1OIE A;  3RL3 A;  1WAO 1;  2CV9 A;  3RL4 A;  2NYM C;  4LAC C;  4I5N C;  4I5L C;  1AUI A;  4ORB A;  4DT2 A;  1W24 A;  3JYF A;  1Z2X A;  3QG5 C;  2AHD A;  1NNW A;  4FCX A;  3FLO A;  2HYO A;  2R17 A;  3PSN A;  4KBP A;  2USH A;  1FJM A;  4V0X A;  2ZOA A;  4ORC A;  3EGH A;  3QFK A;  2YEQ A;  5GTU A;  5JPF A;  3DW8 C;  1SU1 A;  2WDC A;  3T1I A;  4JA7 A;  3AV0 A;  2IE3 C;  3H63 A;  5EQV A;  2BDX A;  4YKE A;  1S3M A;  4FBQ A;  3H69 A;  4H2F A;  4H2I A;  4H2G A;  4J6O A;  2DFJ A;  3H64 A;  2NXF A;  2WDD A;  5C1V A;  2QJC A;  1IT6 A;  3D03 A;  1HP1 A;  1Z2W A;  3V4Y A;  2A22 A;  2BCD A;  3FGA C;  2DXL A;  2BQ8 X;  2QFP A;  1II7 A;  3QFN A;  1S95 A;  4ORA A;  4OR9 A;  3IB7 A;  3N5U A;  1XZW A;  3QFO A;  4DSY A;  2ZO9 B;  2DXN A;  3EGG A;  4H1Y P;  4ZX2 A;  4HD0 A;  4MOV A;  1S3N A;  5INB A;  1U32 A;  2Z06 A;  3CK2 A;  4V0W A;  4XPN A;  3TGH A;  4ZVZ A;  3H68 A;  4H1S A;  4UT3 B;  4MOY A;  1WAR A;  5J28 A;  1HO5 A;  2HYP A;  4LU9 A;  2WDE A;  1QFC A;  2Z72 A;  1USH A;  4MP0 A;  4WWL A;  4B2O A;  1S3L A;  4IYP C;  1OI8 A;  3ZU0 A;  5HPE A;  2HY1 A;  3E7B A;  2ZBM A;  3LL8 A;  5B8I A;  3IVE A;  5JPE A;  4UT2 A;  3IVD A;  2KKN A;  3KBP A;  3RL5 A;  5DNY A;  2IE4 C;  3DSD A;  4UT3 A;  4O24 A;  1M63 A;  4O4K A;  2O8G A;  2O8A A;  2QFR A;  3P71 C;  1T71 A;  4FBK A;  4M0V A;  3H67 A;  4JA9 A;  1V73 A;  1S8E A;  4O43 A;  3DSC A;  3GVE A;  1XM7 A;  3IB8 A;  4G9J A;  5F3W A;  3H62 B;  3AUZ A;  3PSO A;  1UTE A;  2YVT A;  4H2B A;  3THO B;  5IOH A;  4Q7F A;  5JJT A;  1JK7 A;  1TCO A;  2JOG A;  1QHW A;  3H66 A;  3K7V C;  4FBW A;  3THN A;  4IL1 A;  2XMO A;  4TUG A;  4V0V A;  3E7A A;  1UF3 A;  3QFM A;  1MF8 A;  4F0Z A;  3E0J A;  4TUI A;  2Z1A A;  4KKZ A;  4DHL A;  2IAE C; 
#chains in the Genus database with same CATH homology
 2P6B A;  3ZTV A;  2WDF A;  1KBP A;  3ICF A;  3H61 A;  2Q8U A;  1S70 A;  4LTY A;  2NYL C;  3HVQ A;  1HPU A;  1OID A;  3K7W C;  3C9F A;  2NPP C;  4NZV A;  4O5G A;  4UWQ A;  1T70 A;  3RQZ A;  1G5B A;  2GJU A;  3H60 A;  3C5W C;  1OIE A;  3RL3 A;  1WAO 1;  2CV9 A;  3RL4 A;  2NYM C;  4LAC C;  4I5N C;  4I5L C;  1AUI A;  4ORB A;  4DT2 A;  1W24 A;  3JYF A;  1Z2X A;  3QG5 C;  2AHD A;  1NNW A;  4FCX A;  3FLO A;  2HYO A;  2R17 A;  3PSN A;  4KBP A;  2USH A;  1FJM A;  4V0X A;  2ZOA A;  4ORC A;  3EGH A;  3QFK A;  2YEQ A;  5GTU A;  5JPF A;  3DW8 C;  1SU1 A;  2WDC A;  3T1I A;  4JA7 A;  3AV0 A;  2IE3 C;  3H63 A;  5EQV A;  2BDX A;  4YKE A;  1S3M A;  4FBQ A;  3H69 A;  4H2F A;  4H2I A;  4H2G A;  4J6O A;  2DFJ A;  3H64 A;  2NXF A;  2WDD A;  5C1V A;  2QJC A;  1IT6 A;  3D03 A;  1HP1 A;  1Z2W A;  3V4Y A;  2A22 A;  2BCD A;  3FGA C;  2DXL A;  2BQ8 X;  2QFP A;  1II7 A;  3QFN A;  1S95 A;  4ORA A;  4OR9 A;  3IB7 A;  3N5U A;  1XZW A;  3QFO A;  4DSY A;  2ZO9 B;  2DXN A;  3EGG A;  4H1Y P;  4ZX2 A;  4HD0 A;  4MOV A;  1S3N A;  5INB A;  1U32 A;  2Z06 A;  3CK2 A;  4V0W A;  4XPN A;  3TGH A;  4ZVZ A;  3H68 A;  4H1S A;  4UT3 B;  4MOY A;  1WAR A;  5J28 A;  1HO5 A;  2HYP A;  4LU9 A;  2WDE A;  1QFC A;  2Z72 A;  1USH A;  4MP0 A;  4WWL A;  4B2O A;  1S3L A;  4IYP C;  1OI8 A;  3ZU0 A;  5HPE A;  2HY1 A;  3E7B A;  2ZBM A;  3LL8 A;  5B8I A;  3IVE A;  5JPE A;  4UT2 A;  3IVD A;  2KKN A;  3KBP A;  3RL5 A;  5DNY A;  2IE4 C;  3DSD A;  4UT3 A;  4O24 A;  1M63 A;  4O4K A;  2O8G A;  2O8A A;  2QFR A;  3P71 C;  1T71 A;  4FBK A;  4M0V A;  3H67 A;  4JA9 A;  1V73 A;  1S8E A;  4O43 A;  3DSC A;  3GVE A;  1XM7 A;  3IB8 A;  4G9J A;  5F3W A;  3H62 B;  3AUZ A;  3PSO A;  1UTE A;  2YVT A;  4H2B A;  3THO B;  5IOH A;  4Q7F A;  5JJT A;  1JK7 A;  1TCO A;  2JOG A;  1QHW A;  3H66 A;  3K7V C;  4FBW A;  3THN A;  4IL1 A;  2XMO A;  4TUG A;  4V0V A;  3E7A A;  1UF3 A;  3QFM A;  1MF8 A;  4F0Z A;  3E0J A;  4TUI A;  2Z1A A;  4KKZ A;  4DHL A;  2IAE C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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