2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Thermus thermophilus
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
1S8EA 1SU1A 4O5GA 5DNYA 1T70A 3AV0A 1HO5A 5IOHA 4M0VA 3THOB 4DSYA 3H67A 3GVEA 1QHWA 1S70A 3H60A 2BDXA 3JYFA 3H69A 2USHA 4HD0A 3HVQA 4LU9A 5JPEA 2Z72A 2Z06A 4I5LC 4O24A 1UTEA 4ORCA 2IE4C 2XMOA 2WDCA 3RL4A 1MF8A 1S3LA 2NYMC 3N5UA 1JK7A 2ZBMA 1Z2XA 4H2GA 2JOGA 4WWLA 3IB7A 4JA9A 3QFMA 3E7AA 3E7BA 4LACC 3RL5A 4V0WA 4ORAA 1S95A 1KBPA 1M63A 2AHDA 3PSNA 4B2OA 5F3WA 1W24A 4LTYA 3THNA 4MOVA 4J6OA 2WDDA 2P6BA 2IE3C 4IL1A 4O43A 5JJTA 3DSDA 1Z2WA 4FBKA 4KKZA 3EGGA 1AUIA 3QFOA 2Q8UA 2BQ8X 1TCOA 4DT2A 3T1IA 4H1SA 4OR9A 4FBWA 1QFCA 1IT6A 4UT3A 2WDFA 1HPUA 1XM7A 2R17A 3RQZA 5GTUA 3TGHA 2Z1AA 4O4KA 2KKNA 3IVEA 4ZVZA 2O8GA 5HPEA 5C1VA 5JPFA 2QFRA 1OIEA 4UT2A 1OIDA 4UWQA 4FCXA 2WDEA 2QJCA 4Q7FA 4IYPC 2DFJA 3AUZA 2QFPA 5INBA 3QFKA 4YKEA 3IVDA 2HYPA 3H62B 3QG5C 4XPNA 2CV9A 3C5WC 3C9FA 1UF3A 2BCDA 2NXFA 1FJMA 3EGHA 3H64A 3K7WC 4JA7A 3QFNA 4ZX2A 1S3MA 4V0VA 3H61A 1T71A 3KBPA 3V4YA 3CK2A 3P71C 4FBQA 4TUGA 4TUIA 1XZWA 1WAO1 1HP1A 4V0XA 3RL3A 2NPPC 3IB8A 4H2BA 4H2FA 3K7VC 1WARA 1USHA 3PSOA 4DHLA 1U32A 2A22A 4F0ZA 1OI8A 1S3NA 2NYLC 3DSCA 3H63A 4MOYA 4KBPA 4UT3B 5J28A 4ORBA 5B8IA 3FGAC 2IAEC 1G5BA 4H2IA 4I5NC 2HY1A 4MP0A 3ICFA 3LL8A 4H1YP 1NNWA 4NZVA 3H66A 3ZU0A 1II7A 5EQVA 2GJUA 3H68A 2YVTA 3DW8C 2HYOA 1V73A 2O8AA 3ZTVA 4G9JA
chains in the Genus database with same CATH superfamily
1S8EA 1SU1A 4O5GA 5DNYA 1T70A 3AV0A 1HO5A 5IOHA 4M0VA 3THOB 4DSYA 3H67A 3GVEA 1QHWA 1S70A 3H60A 2BDXA 3JYFA 3H69A 2USHA 4HD0A 3HVQA 4LU9A 5JPEA 2Z72A 2Z06A 4I5LC 4O24A 1UTEA 4ORCA 2IE4C 2XMOA 2WDCA 3RL4A 1MF8A 1S3LA 2NYMC 3N5UA 2YEQA 1JK7A 2ZBMA 1Z2XA 4H2GA 2JOGA 4WWLA 3IB7A 4JA9A 3QFMA 3E7AA 3E7BA 4LACC 3RL5A 4V0WA 4ORAA 1S95A 1KBPA 1M63A 2AHDA 3PSNA 2ZO9B 4B2OA 5F3WA 1W24A 4LTYA 3THNA 4MOVA 4J6OA 2WDDA 2P6BA 2IE3C 4IL1A 4O43A 5JJTA 3DSDA 1Z2WA 4FBKA 4KKZA 3EGGA 1AUIA 3QFOA 2Q8UA 2BQ8X 1TCOA 4DT2A 3T1IA 4H1SA 4OR9A 4FBWA 1QFCA 1IT6A 4UT3A 2WDFA 1HPUA 1XM7A 2R17A 3RQZA 5GTUA 3TGHA 2Z1AA 4O4KA 2KKNA 3IVEA 4ZVZA 2O8GA 5HPEA 5C1VA 5JPFA 2QFRA 1OIEA 4UT2A 1OIDA 4UWQA 4FCXA 2WDEA 2QJCA 4Q7FA 4IYPC 2DFJA 2DXNA 2QFPA 3AUZA 3E0JA 5INBA 3QFKA 4YKEA 3IVDA 2HYPA 3H62B 3QG5C 4XPNA 2CV9A 3C5WC 3C9FA 1UF3A 2BCDA 2NXFA 1FJMA 3EGHA 3H64A 3K7WC 4JA7A 3QFNA 4ZX2A 2ZOAA 1S3MA 4V0VA 3H61A 1T71A 3KBPA 3V4YA 3CK2A 3P71C 4FBQA 4TUGA 4TUIA 1XZWA 1WAO1 1HP1A 4V0XA 3RL3A 2NPPC 3IB8A 4H2BA 4H2FA 3K7VC 3D03A 1WARA 1USHA 3PSOA 4DHLA 1U32A 2A22A 4F0ZA 1OI8A 1S3NA 2NYLC 2DXLA 3DSCA 3H63A 4MOYA 4KBPA 4UT3B 5J28A 4ORBA 5B8IA 3FGAC 2IAEC 1G5BA 4H2IA 4I5NC 2HY1A 4MP0A 3ICFA 3LL8A 4H1YP 1NNWA 3FLOA 3H66A 4NZVA 1II7A 5EQVA 3ZU0A 2GJUA 3H68A 2YVTA 3DW8C 2HYOA 1V73A 2O8AA 3ZTVA 4G9JA
chains in the Genus database with same CATH topology
1S8EA 1SU1A 4O5GA 5DNYA 1T70A 3AV0A 1HO5A 5IOHA 4M0VA 3THOB 4DSYA 3H67A 3GVEA 1QHWA 1S70A 3H60A 2BDXA 3JYFA 3H69A 2USHA 4HD0A 3HVQA 4LU9A 5JPEA 2Z72A 2Z06A 4I5LC 4O24A 1UTEA 4ORCA 2IE4C 2XMOA 2WDCA 3RL4A 1MF8A 1S3LA 2NYMC 3N5UA 2YEQA 1JK7A 2ZBMA 1Z2XA 4H2GA 2JOGA 4WWLA 3IB7A 4JA9A 3QFMA 3E7AA 3E7BA 4LACC 3RL5A 4V0WA 4ORAA 1S95A 1KBPA 1M63A 2AHDA 3PSNA 2ZO9B 4B2OA 5F3WA 1W24A 4LTYA 3THNA 4MOVA 4J6OA 2WDDA 2P6BA 2IE3C 4IL1A 4O43A 5JJTA 3DSDA 1Z2WA 4FBKA 4KKZA 3EGGA 1AUIA 3QFOA 2Q8UA 2BQ8X 1TCOA 4DT2A 3T1IA 4H1SA 4OR9A 4FBWA 1QFCA 1IT6A 4UT3A 2WDFA 1HPUA 1XM7A 2R17A 3RQZA 5GTUA 3TGHA 2Z1AA 4O4KA 2KKNA 3IVEA 4ZVZA 2O8GA 5HPEA 5C1VA 5JPFA 2QFRA 1OIEA 4UT2A 1OIDA 4UWQA 4FCXA 2WDEA 2QJCA 4Q7FA 4IYPC 2DFJA 2DXNA 2QFPA 3AUZA 3E0JA 5INBA 3QFKA 4YKEA 3IVDA 2HYPA 3H62B 3QG5C 4XPNA 2CV9A 3C5WC 3C9FA 1UF3A 2BCDA 2NXFA 1FJMA 3EGHA 3H64A 3K7WC 4JA7A 3QFNA 4ZX2A 2ZOAA 1S3MA 4V0VA 3H61A 1T71A 3KBPA 3V4YA 3CK2A 3P71C 4FBQA 4TUGA 4TUIA 1XZWA 1WAO1 1HP1A 4V0XA 3RL3A 2NPPC 3IB8A 4H2BA 4H2FA 3K7VC 3D03A 1WARA 1USHA 3PSOA 4DHLA 1U32A 2A22A 4F0ZA 1OI8A 1S3NA 2NYLC 2DXLA 3DSCA 3H63A 4MOYA 4KBPA 4UT3B 5J28A 4ORBA 5B8IA 3FGAC 2IAEC 1G5BA 4H2IA 4I5NC 2HY1A 4MP0A 3ICFA 3LL8A 4H1YP 1NNWA 3FLOA 3H66A 4NZVA 1II7A 5EQVA 3ZU0A 2GJUA 3H68A 2YVTA 3DW8C 2HYOA 1V73A 2O8AA 3ZTVA 4G9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S8E A;  1SU1 A;  4O5G A;  5DNY A;  1T70 A;  3AV0 A;  1HO5 A;  5IOH A;  4M0V A;  3THO B;  4DSY A;  3H67 A;  3GVE A;  1QHW A;  1S70 A;  3H60 A;  2BDX A;  3JYF A;  3H69 A;  2USH A;  4HD0 A;  3HVQ A;  4LU9 A;  5JPE A;  2Z72 A;  2Z06 A;  4I5L C;  4O24 A;  1UTE A;  4ORC A;  2IE4 C;  2XMO A;  2WDC A;  3RL4 A;  1MF8 A;  1S3L A;  2NYM C;  3N5U A;  1JK7 A;  2ZBM A;  1Z2X A;  4H2G A;  2JOG A;  4WWL A;  3IB7 A;  4JA9 A;  3QFM A;  3E7A A;  3E7B A;  4LAC C;  3RL5 A;  4V0W A;  4ORA A;  1S95 A;  1KBP A;  1M63 A;  2AHD A;  3PSN A;  4B2O A;  5F3W A;  1W24 A;  4LTY A;  3THN A;  4MOV A;  4J6O A;  2WDD A;  2P6B A;  2IE3 C;  4IL1 A;  4O43 A;  5JJT A;  3DSD A;  1Z2W A;  4FBK A;  4KKZ A;  3EGG A;  1AUI A;  3QFO A;  2Q8U A;  2BQ8 X;  1TCO A;  4DT2 A;  3T1I A;  4H1S A;  4OR9 A;  4FBW A;  1QFC A;  1IT6 A;  4UT3 A;  2WDF A;  1HPU A;  1XM7 A;  2R17 A;  3RQZ A;  5GTU A;  3TGH A;  2Z1A A;  4O4K A;  2KKN A;  3IVE A;  4ZVZ A;  2O8G A;  5HPE A;  5C1V A;  5JPF A;  2QFR A;  1OIE A;  4UT2 A;  1OID A;  4UWQ A;  4FCX A;  2WDE A;  2QJC A;  4Q7F A;  4IYP C;  2DFJ A;  3AUZ A;  2QFP A;  5INB A;  3QFK A;  4YKE A;  3IVD A;  2HYP A;  3H62 B;  3QG5 C;  4XPN A;  2CV9 A;  3C5W C;  3C9F A;  1UF3 A;  2BCD A;  2NXF A;  1FJM A;  3EGH A;  3H64 A;  3K7W C;  4JA7 A;  3QFN A;  4ZX2 A;  1S3M A;  4V0V A;  3H61 A;  1T71 A;  3KBP A;  3V4Y A;  3CK2 A;  3P71 C;  4FBQ A;  4TUG A;  4TUI A;  1XZW A;  1WAO 1;  1HP1 A;  4V0X A;  3RL3 A;  2NPP C;  3IB8 A;  4H2B A;  4H2F A;  3K7V C;  1WAR A;  1USH A;  3PSO A;  4DHL A;  1U32 A;  2A22 A;  4F0Z A;  1OI8 A;  1S3N A;  2NYL C;  3DSC A;  3H63 A;  4MOY A;  4KBP A;  4UT3 B;  5J28 A;  4ORB A;  5B8I A;  3FGA C;  2IAE C;  1G5B A;  4H2I A;  4I5N C;  2HY1 A;  4MP0 A;  3ICF A;  3LL8 A;  4H1Y P;  1NNW A;  4NZV A;  3H66 A;  3ZU0 A;  1II7 A;  5EQV A;  2GJU A;  3H68 A;  2YVT A;  3DW8 C;  2HYO A;  1V73 A;  2O8A A;  3ZTV A;  4G9J A; 
#chains in the Genus database with same CATH topology
 1S8E A;  1SU1 A;  4O5G A;  5DNY A;  1T70 A;  3AV0 A;  1HO5 A;  5IOH A;  4M0V A;  3THO B;  4DSY A;  3H67 A;  3GVE A;  1QHW A;  1S70 A;  3H60 A;  2BDX A;  3JYF A;  3H69 A;  2USH A;  4HD0 A;  3HVQ A;  4LU9 A;  5JPE A;  2Z72 A;  2Z06 A;  4I5L C;  4O24 A;  1UTE A;  4ORC A;  2IE4 C;  2XMO A;  2WDC A;  3RL4 A;  1MF8 A;  1S3L A;  2NYM C;  3N5U A;  2YEQ A;  1JK7 A;  2ZBM A;  1Z2X A;  4H2G A;  2JOG A;  4WWL A;  3IB7 A;  4JA9 A;  3QFM A;  3E7A A;  3E7B A;  4LAC C;  3RL5 A;  4V0W A;  4ORA A;  1S95 A;  1KBP A;  1M63 A;  2AHD A;  3PSN A;  2ZO9 B;  4B2O A;  5F3W A;  1W24 A;  4LTY A;  3THN A;  4MOV A;  4J6O A;  2WDD A;  2P6B A;  2IE3 C;  4IL1 A;  4O43 A;  5JJT A;  3DSD A;  1Z2W A;  4FBK A;  4KKZ A;  3EGG A;  1AUI A;  3QFO A;  2Q8U A;  2BQ8 X;  1TCO A;  4DT2 A;  3T1I A;  4H1S A;  4OR9 A;  4FBW A;  1QFC A;  1IT6 A;  4UT3 A;  2WDF A;  1HPU A;  1XM7 A;  2R17 A;  3RQZ A;  5GTU A;  3TGH A;  2Z1A A;  4O4K A;  2KKN A;  3IVE A;  4ZVZ A;  2O8G A;  5HPE A;  5C1V A;  5JPF A;  2QFR A;  1OIE A;  4UT2 A;  1OID A;  4UWQ A;  4FCX A;  2WDE A;  2QJC A;  4Q7F A;  4IYP C;  2DFJ A;  2DXN A;  2QFP A;  3AUZ A;  3E0J A;  5INB A;  3QFK A;  4YKE A;  3IVD A;  2HYP A;  3H62 B;  3QG5 C;  4XPN A;  2CV9 A;  3C5W C;  3C9F A;  1UF3 A;  2BCD A;  2NXF A;  1FJM A;  3EGH A;  3H64 A;  3K7W C;  4JA7 A;  3QFN A;  4ZX2 A;  2ZOA A;  1S3M A;  4V0V A;  3H61 A;  1T71 A;  3KBP A;  3V4Y A;  3CK2 A;  3P71 C;  4FBQ A;  4TUG A;  4TUI A;  1XZW A;  1WAO 1;  1HP1 A;  4V0X A;  3RL3 A;  2NPP C;  3IB8 A;  4H2B A;  4H2F A;  3K7V C;  3D03 A;  1WAR A;  1USH A;  3PSO A;  4DHL A;  1U32 A;  2A22 A;  4F0Z A;  1OI8 A;  1S3N A;  2NYL C;  2DXL A;  3DSC A;  3H63 A;  4MOY A;  4KBP A;  4UT3 B;  5J28 A;  4ORB A;  5B8I A;  3FGA C;  2IAE C;  1G5B A;  4H2I A;  4I5N C;  2HY1 A;  4MP0 A;  3ICF A;  3LL8 A;  4H1Y P;  1NNW A;  3FLO A;  3H66 A;  4NZV A;  1II7 A;  5EQV A;  3ZU0 A;  2GJU A;  3H68 A;  2YVT A;  3DW8 C;  2HYO A;  1V73 A;  2O8A A;  3ZTV A;  4G9J A; 
#chains in the Genus database with same CATH homology
 1S8E A;  1SU1 A;  4O5G A;  5DNY A;  1T70 A;  3AV0 A;  1HO5 A;  5IOH A;  4M0V A;  3THO B;  4DSY A;  3H67 A;  3GVE A;  1QHW A;  1S70 A;  3H60 A;  2BDX A;  3JYF A;  3H69 A;  2USH A;  4HD0 A;  3HVQ A;  4LU9 A;  5JPE A;  2Z72 A;  2Z06 A;  4I5L C;  4O24 A;  1UTE A;  4ORC A;  2IE4 C;  2XMO A;  2WDC A;  3RL4 A;  1MF8 A;  1S3L A;  2NYM C;  3N5U A;  2YEQ A;  1JK7 A;  2ZBM A;  1Z2X A;  4H2G A;  2JOG A;  4WWL A;  3IB7 A;  4JA9 A;  3QFM A;  3E7A A;  3E7B A;  4LAC C;  3RL5 A;  4V0W A;  4ORA A;  1S95 A;  1KBP A;  1M63 A;  2AHD A;  3PSN A;  2ZO9 B;  4B2O A;  5F3W A;  1W24 A;  4LTY A;  3THN A;  4MOV A;  4J6O A;  2WDD A;  2P6B A;  2IE3 C;  4IL1 A;  4O43 A;  5JJT A;  3DSD A;  1Z2W A;  4FBK A;  4KKZ A;  3EGG A;  1AUI A;  3QFO A;  2Q8U A;  2BQ8 X;  1TCO A;  4DT2 A;  3T1I A;  4H1S A;  4OR9 A;  4FBW A;  1QFC A;  1IT6 A;  4UT3 A;  2WDF A;  1HPU A;  1XM7 A;  2R17 A;  3RQZ A;  5GTU A;  3TGH A;  2Z1A A;  4O4K A;  2KKN A;  3IVE A;  4ZVZ A;  2O8G A;  5HPE A;  5C1V A;  5JPF A;  2QFR A;  1OIE A;  4UT2 A;  1OID A;  4UWQ A;  4FCX A;  2WDE A;  2QJC A;  4Q7F A;  4IYP C;  2DFJ A;  2DXN A;  2QFP A;  3AUZ A;  3E0J A;  5INB A;  3QFK A;  4YKE A;  3IVD A;  2HYP A;  3H62 B;  3QG5 C;  4XPN A;  2CV9 A;  3C5W C;  3C9F A;  1UF3 A;  2BCD A;  2NXF A;  1FJM A;  3EGH A;  3H64 A;  3K7W C;  4JA7 A;  3QFN A;  4ZX2 A;  2ZOA A;  1S3M A;  4V0V A;  3H61 A;  1T71 A;  3KBP A;  3V4Y A;  3CK2 A;  3P71 C;  4FBQ A;  4TUG A;  4TUI A;  1XZW A;  1WAO 1;  1HP1 A;  4V0X A;  3RL3 A;  2NPP C;  3IB8 A;  4H2B A;  4H2F A;  3K7V C;  3D03 A;  1WAR A;  1USH A;  3PSO A;  4DHL A;  1U32 A;  2A22 A;  4F0Z A;  1OI8 A;  1S3N A;  2NYL C;  2DXL A;  3DSC A;  3H63 A;  4MOY A;  4KBP A;  4UT3 B;  5J28 A;  4ORB A;  5B8I A;  3FGA C;  2IAE C;  1G5B A;  4H2I A;  4I5N C;  2HY1 A;  4MP0 A;  3ICF A;  3LL8 A;  4H1Y P;  1NNW A;  3FLO A;  3H66 A;  4NZV A;  1II7 A;  5EQV A;  3ZU0 A;  2GJU A;  3H68 A;  2YVT A;  3DW8 C;  2HYO A;  1V73 A;  2O8A A;  3ZTV A;  4G9J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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