2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
2WDEA 5J28A 4O24A 3QFOA 4I5NC 2P6BA 3ICFA 4IL1A 4H2FA 3RL4A 5HPEA 1OIDA 3IB7A 4UT3B 5EQVA 4KBPA 4NZVA 2XMOA 4O5GA 2QJCA 3IB8A 2NYLC 1OIEA 4O43A 1V73A 3FGAC 3EGGA 4ZVZA 1Z2WA 1KBPA 3QFNA 3LL8A 3RL5A 1UTEA 1T71A 3IVDA 1WAO1 4H1SA 2Z72A 1W24A 2AHDA 4J6OA 5C1VA 3T1IA 4MOYA 2NYMC 3H68A 4O4KA 4XPNA 4DHLA 4UT2A 1T70A 2WDCA 4M0VA 3DSDA 1G5BA 3ZU0A 1II7A 1UF3A 4JA7A 3H69A 3DW8C 2QFRA 4I5LC 3ZTVA 4YKEA 3RQZA 2CV9A 2BQ8X 2WDDA 3GVEA 4DSYA 2Z1AA 3AUZA 3THOB 2JOGA 4ORBA 3K7WC 1QHWA 1XM7A 4MP0A 1S8EA 4UT3A 1JK7A 2NPPC 4LU9A 3RL3A 5F3WA 4MOVA 3C5WC 4TUIA 3DSCA 1M63A 3P71C 4ORAA 4OR9A 1S70A 1S3MA 4V0XA 1AUIA 1OI8A 3QFMA 2BDXA 3THNA 3N5UA 3C9FA 1S3LA 1HP1A 1S3NA 4ZX2A 5DNYA 4JA9A 3TGHA 2IAEC 1U32A 2O8GA 2R17A 5JPFA 3H66A 2USHA 4H2BA 1Z2XA 1MF8A 2IE4C 4FBWA 3HVQA 4FBQA 5GTUA 2A22A 2Z06A 4WWLA 2DFJA 4V0VA 1QFCA 1TCOA 2HYPA 1HPUA 3CK2A 3H60A 3QG5C 3H61A 1USHA 3AV0A 2NXFA 4HD0A 3H63A 4UWQA 3EGHA 2KKNA 4LACC 3E7AA 3JYFA 4H1YP 4H2GA 2Q8UA 2HY1A 3QFKA 1FJMA 2HYOA 5JJTA 2QFPA 5B8IA 1HO5A 3PSNA 2GJUA 3H67A 2ZBMA 4H2IA 4IYPC 4V0WA 3H62B 1SU1A 2O8AA 4FBKA 4LTYA 3E7BA 4G9JA 4B2OA 5JPEA 3PSOA 4Q7FA 5IOHA 4FCXA 5INBA 1IT6A 1NNWA 3V4YA 4DT2A 4TUGA 2IE3C 1S95A 2WDFA 1XZWA 3H64A 2BCDA 3K7VC 4KKZA 3KBPA 3IVEA 4F0ZA 4ORCA 2YVTA 1WARA
chains in the Genus database with same CATH superfamily
2WDEA 5J28A 4O24A 3QFOA 4I5NC 2P6BA 3ICFA 4IL1A 4H2FA 3RL4A 5HPEA 2DXNA 1OIDA 3IB7A 4UT3B 5EQVA 4KBPA 4NZVA 2XMOA 4O5GA 2QJCA 3IB8A 2NYLC 1OIEA 4O43A 1V73A 3FGAC 3EGGA 4ZVZA 1Z2WA 1KBPA 3QFNA 2ZO9B 3LL8A 3RL5A 1UTEA 1T71A 3IVDA 1WAO1 4H1SA 2Z72A 1W24A 2AHDA 4J6OA 5C1VA 3T1IA 4MOYA 2NYMC 3H68A 4O4KA 4XPNA 4DHLA 3E0JA 4UT2A 1T70A 2WDCA 4M0VA 3DSDA 1G5BA 3D03A 3ZU0A 1II7A 1UF3A 4JA7A 3H69A 3DW8C 2QFRA 4I5LC 3ZTVA 4YKEA 3RQZA 2CV9A 2BQ8X 2WDDA 2YEQA 3GVEA 4DSYA 2Z1AA 3AUZA 3THOB 2JOGA 4ORBA 3K7WC 1QHWA 1XM7A 4MP0A 1S8EA 4UT3A 1JK7A 2NPPC 2ZOAA 4LU9A 3RL3A 5F3WA 4MOVA 3C5WC 4TUIA 3DSCA 1M63A 3P71C 4ORAA 4OR9A 1S70A 1S3MA 4V0XA 1AUIA 1OI8A 3QFMA 2BDXA 3THNA 3N5UA 3C9FA 1S3LA 1HP1A 3FLOA 1S3NA 4ZX2A 5DNYA 4JA9A 3TGHA 2IAEC 1U32A 2O8GA 2R17A 5JPFA 3H66A 2USHA 4H2BA 1Z2XA 1MF8A 2IE4C 4FBWA 3HVQA 4FBQA 5GTUA 2A22A 2Z06A 4WWLA 2DFJA 4V0VA 1QFCA 1TCOA 2HYPA 1HPUA 3CK2A 3H60A 3QG5C 3H61A 1USHA 3AV0A 2NXFA 4HD0A 3H63A 4UWQA 3EGHA 2KKNA 4LACC 3E7AA 3JYFA 4H1YP 4H2GA 2Q8UA 2HY1A 3QFKA 1FJMA 2HYOA 5JJTA 2QFPA 5B8IA 1HO5A 3PSNA 2GJUA 3H67A 2ZBMA 4H2IA 2DXLA 4IYPC 4V0WA 3H62B 1SU1A 2O8AA 4FBKA 4LTYA 3E7BA 4G9JA 4B2OA 5JPEA 3PSOA 4Q7FA 5IOHA 4FCXA 5INBA 1IT6A 1NNWA 3V4YA 4DT2A 4TUGA 2IE3C 1S95A 2WDFA 1XZWA 3H64A 2BCDA 3K7VC 4KKZA 3KBPA 3IVEA 4F0ZA 4ORCA 2YVTA 1WARA
chains in the Genus database with same CATH topology
2WDEA 5J28A 4O24A 3QFOA 4I5NC 2P6BA 3ICFA 4IL1A 4H2FA 3RL4A 5HPEA 2DXNA 1OIDA 3IB7A 4UT3B 5EQVA 4KBPA 4NZVA 2XMOA 4O5GA 2QJCA 3IB8A 2NYLC 1OIEA 4O43A 1V73A 3FGAC 3EGGA 4ZVZA 1Z2WA 1KBPA 3QFNA 2ZO9B 3LL8A 3RL5A 1UTEA 1T71A 3IVDA 1WAO1 4H1SA 2Z72A 1W24A 2AHDA 4J6OA 5C1VA 3T1IA 4MOYA 2NYMC 3H68A 4O4KA 4XPNA 4DHLA 3E0JA 4UT2A 1T70A 2WDCA 4M0VA 3DSDA 1G5BA 3D03A 3ZU0A 1II7A 1UF3A 4JA7A 3H69A 3DW8C 2QFRA 4I5LC 3ZTVA 4YKEA 3RQZA 2CV9A 2BQ8X 2WDDA 2YEQA 3GVEA 4DSYA 2Z1AA 3AUZA 3THOB 2JOGA 4ORBA 3K7WC 1QHWA 1XM7A 4MP0A 1S8EA 4UT3A 1JK7A 2NPPC 2ZOAA 4LU9A 3RL3A 5F3WA 4MOVA 3C5WC 4TUIA 3DSCA 1M63A 3P71C 4ORAA 4OR9A 1S70A 1S3MA 4V0XA 1AUIA 1OI8A 3QFMA 2BDXA 3THNA 3N5UA 3C9FA 1S3LA 1HP1A 3FLOA 1S3NA 4ZX2A 5DNYA 4JA9A 3TGHA 2IAEC 1U32A 2O8GA 2R17A 5JPFA 3H66A 2USHA 4H2BA 1Z2XA 1MF8A 2IE4C 4FBWA 3HVQA 4FBQA 5GTUA 2A22A 2Z06A 4WWLA 2DFJA 4V0VA 1QFCA 1TCOA 2HYPA 1HPUA 3CK2A 3H60A 3QG5C 3H61A 1USHA 3AV0A 2NXFA 4HD0A 3H63A 4UWQA 3EGHA 2KKNA 4LACC 3E7AA 3JYFA 4H1YP 4H2GA 2Q8UA 2HY1A 3QFKA 1FJMA 2HYOA 5JJTA 2QFPA 5B8IA 1HO5A 3PSNA 2GJUA 3H67A 2ZBMA 4H2IA 2DXLA 4IYPC 4V0WA 3H62B 1SU1A 2O8AA 4FBKA 4LTYA 3E7BA 4G9JA 4B2OA 5JPEA 3PSOA 4Q7FA 5IOHA 4FCXA 5INBA 1IT6A 1NNWA 3V4YA 4DT2A 4TUGA 2IE3C 1S95A 2WDFA 1XZWA 3H64A 2BCDA 3K7VC 4KKZA 3KBPA 3IVEA 4F0ZA 4ORCA 2YVTA 1WARA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDE A;  5J28 A;  4O24 A;  3QFO A;  4I5N C;  2P6B A;  3ICF A;  4IL1 A;  4H2F A;  3RL4 A;  5HPE A;  1OID A;  3IB7 A;  4UT3 B;  5EQV A;  4KBP A;  4NZV A;  2XMO A;  4O5G A;  2QJC A;  3IB8 A;  2NYL C;  1OIE A;  4O43 A;  1V73 A;  3FGA C;  3EGG A;  4ZVZ A;  1Z2W A;  1KBP A;  3QFN A;  3LL8 A;  3RL5 A;  1UTE A;  1T71 A;  3IVD A;  1WAO 1;  4H1S A;  2Z72 A;  1W24 A;  2AHD A;  4J6O A;  5C1V A;  3T1I A;  4MOY A;  2NYM C;  3H68 A;  4O4K A;  4XPN A;  4DHL A;  4UT2 A;  1T70 A;  2WDC A;  4M0V A;  3DSD A;  1G5B A;  3ZU0 A;  1II7 A;  1UF3 A;  4JA7 A;  3H69 A;  3DW8 C;  2QFR A;  4I5L C;  3ZTV A;  4YKE A;  3RQZ A;  2CV9 A;  2BQ8 X;  2WDD A;  3GVE A;  4DSY A;  2Z1A A;  3AUZ A;  3THO B;  2JOG A;  4ORB A;  3K7W C;  1QHW A;  1XM7 A;  4MP0 A;  1S8E A;  4UT3 A;  1JK7 A;  2NPP C;  4LU9 A;  3RL3 A;  5F3W A;  4MOV A;  3C5W C;  4TUI A;  3DSC A;  1M63 A;  3P71 C;  4ORA A;  4OR9 A;  1S70 A;  1S3M A;  4V0X A;  1AUI A;  1OI8 A;  3QFM A;  2BDX A;  3THN A;  3N5U A;  3C9F A;  1S3L A;  1HP1 A;  1S3N A;  4ZX2 A;  5DNY A;  4JA9 A;  3TGH A;  2IAE C;  1U32 A;  2O8G A;  2R17 A;  5JPF A;  3H66 A;  2USH A;  4H2B A;  1Z2X A;  1MF8 A;  2IE4 C;  4FBW A;  3HVQ A;  4FBQ A;  5GTU A;  2A22 A;  2Z06 A;  4WWL A;  2DFJ A;  4V0V A;  1QFC A;  1TCO A;  2HYP A;  1HPU A;  3CK2 A;  3H60 A;  3QG5 C;  3H61 A;  1USH A;  3AV0 A;  2NXF A;  4HD0 A;  3H63 A;  4UWQ A;  3EGH A;  2KKN A;  4LAC C;  3E7A A;  3JYF A;  4H1Y P;  4H2G A;  2Q8U A;  2HY1 A;  3QFK A;  1FJM A;  2HYO A;  5JJT A;  2QFP A;  5B8I A;  1HO5 A;  3PSN A;  2GJU A;  3H67 A;  2ZBM A;  4H2I A;  4IYP C;  4V0W A;  3H62 B;  1SU1 A;  2O8A A;  4FBK A;  4LTY A;  3E7B A;  4G9J A;  4B2O A;  5JPE A;  3PSO A;  4Q7F A;  5IOH A;  4FCX A;  5INB A;  1IT6 A;  1NNW A;  3V4Y A;  4DT2 A;  4TUG A;  2IE3 C;  1S95 A;  2WDF A;  1XZW A;  3H64 A;  2BCD A;  3K7V C;  4KKZ A;  3KBP A;  3IVE A;  4F0Z A;  4ORC A;  2YVT A;  1WAR A; 
#chains in the Genus database with same CATH topology
 2WDE A;  5J28 A;  4O24 A;  3QFO A;  4I5N C;  2P6B A;  3ICF A;  4IL1 A;  4H2F A;  3RL4 A;  5HPE A;  2DXN A;  1OID A;  3IB7 A;  4UT3 B;  5EQV A;  4KBP A;  4NZV A;  2XMO A;  4O5G A;  2QJC A;  3IB8 A;  2NYL C;  1OIE A;  4O43 A;  1V73 A;  3FGA C;  3EGG A;  4ZVZ A;  1Z2W A;  1KBP A;  3QFN A;  2ZO9 B;  3LL8 A;  3RL5 A;  1UTE A;  1T71 A;  3IVD A;  1WAO 1;  4H1S A;  2Z72 A;  1W24 A;  2AHD A;  4J6O A;  5C1V A;  3T1I A;  4MOY A;  2NYM C;  3H68 A;  4O4K A;  4XPN A;  4DHL A;  3E0J A;  4UT2 A;  1T70 A;  2WDC A;  4M0V A;  3DSD A;  1G5B A;  3D03 A;  3ZU0 A;  1II7 A;  1UF3 A;  4JA7 A;  3H69 A;  3DW8 C;  2QFR A;  4I5L C;  3ZTV A;  4YKE A;  3RQZ A;  2CV9 A;  2BQ8 X;  2WDD A;  2YEQ A;  3GVE A;  4DSY A;  2Z1A A;  3AUZ A;  3THO B;  2JOG A;  4ORB A;  3K7W C;  1QHW A;  1XM7 A;  4MP0 A;  1S8E A;  4UT3 A;  1JK7 A;  2NPP C;  2ZOA A;  4LU9 A;  3RL3 A;  5F3W A;  4MOV A;  3C5W C;  4TUI A;  3DSC A;  1M63 A;  3P71 C;  4ORA A;  4OR9 A;  1S70 A;  1S3M A;  4V0X A;  1AUI A;  1OI8 A;  3QFM A;  2BDX A;  3THN A;  3N5U A;  3C9F A;  1S3L A;  1HP1 A;  3FLO A;  1S3N A;  4ZX2 A;  5DNY A;  4JA9 A;  3TGH A;  2IAE C;  1U32 A;  2O8G A;  2R17 A;  5JPF A;  3H66 A;  2USH A;  4H2B A;  1Z2X A;  1MF8 A;  2IE4 C;  4FBW A;  3HVQ A;  4FBQ A;  5GTU A;  2A22 A;  2Z06 A;  4WWL A;  2DFJ A;  4V0V A;  1QFC A;  1TCO A;  2HYP A;  1HPU A;  3CK2 A;  3H60 A;  3QG5 C;  3H61 A;  1USH A;  3AV0 A;  2NXF A;  4HD0 A;  3H63 A;  4UWQ A;  3EGH A;  2KKN A;  4LAC C;  3E7A A;  3JYF A;  4H1Y P;  4H2G A;  2Q8U A;  2HY1 A;  3QFK A;  1FJM A;  2HYO A;  5JJT A;  2QFP A;  5B8I A;  1HO5 A;  3PSN A;  2GJU A;  3H67 A;  2ZBM A;  4H2I A;  2DXL A;  4IYP C;  4V0W A;  3H62 B;  1SU1 A;  2O8A A;  4FBK A;  4LTY A;  3E7B A;  4G9J A;  4B2O A;  5JPE A;  3PSO A;  4Q7F A;  5IOH A;  4FCX A;  5INB A;  1IT6 A;  1NNW A;  3V4Y A;  4DT2 A;  4TUG A;  2IE3 C;  1S95 A;  2WDF A;  1XZW A;  3H64 A;  2BCD A;  3K7V C;  4KKZ A;  3KBP A;  3IVE A;  4F0Z A;  4ORC A;  2YVT A;  1WAR A; 
#chains in the Genus database with same CATH homology
 2WDE A;  5J28 A;  4O24 A;  3QFO A;  4I5N C;  2P6B A;  3ICF A;  4IL1 A;  4H2F A;  3RL4 A;  5HPE A;  2DXN A;  1OID A;  3IB7 A;  4UT3 B;  5EQV A;  4KBP A;  4NZV A;  2XMO A;  4O5G A;  2QJC A;  3IB8 A;  2NYL C;  1OIE A;  4O43 A;  1V73 A;  3FGA C;  3EGG A;  4ZVZ A;  1Z2W A;  1KBP A;  3QFN A;  2ZO9 B;  3LL8 A;  3RL5 A;  1UTE A;  1T71 A;  3IVD A;  1WAO 1;  4H1S A;  2Z72 A;  1W24 A;  2AHD A;  4J6O A;  5C1V A;  3T1I A;  4MOY A;  2NYM C;  3H68 A;  4O4K A;  4XPN A;  4DHL A;  3E0J A;  4UT2 A;  1T70 A;  2WDC A;  4M0V A;  3DSD A;  1G5B A;  3D03 A;  3ZU0 A;  1II7 A;  1UF3 A;  4JA7 A;  3H69 A;  3DW8 C;  2QFR A;  4I5L C;  3ZTV A;  4YKE A;  3RQZ A;  2CV9 A;  2BQ8 X;  2WDD A;  2YEQ A;  3GVE A;  4DSY A;  2Z1A A;  3AUZ A;  3THO B;  2JOG A;  4ORB A;  3K7W C;  1QHW A;  1XM7 A;  4MP0 A;  1S8E A;  4UT3 A;  1JK7 A;  2NPP C;  2ZOA A;  4LU9 A;  3RL3 A;  5F3W A;  4MOV A;  3C5W C;  4TUI A;  3DSC A;  1M63 A;  3P71 C;  4ORA A;  4OR9 A;  1S70 A;  1S3M A;  4V0X A;  1AUI A;  1OI8 A;  3QFM A;  2BDX A;  3THN A;  3N5U A;  3C9F A;  1S3L A;  1HP1 A;  3FLO A;  1S3N A;  4ZX2 A;  5DNY A;  4JA9 A;  3TGH A;  2IAE C;  1U32 A;  2O8G A;  2R17 A;  5JPF A;  3H66 A;  2USH A;  4H2B A;  1Z2X A;  1MF8 A;  2IE4 C;  4FBW A;  3HVQ A;  4FBQ A;  5GTU A;  2A22 A;  2Z06 A;  4WWL A;  2DFJ A;  4V0V A;  1QFC A;  1TCO A;  2HYP A;  1HPU A;  3CK2 A;  3H60 A;  3QG5 C;  3H61 A;  1USH A;  3AV0 A;  2NXF A;  4HD0 A;  3H63 A;  4UWQ A;  3EGH A;  2KKN A;  4LAC C;  3E7A A;  3JYF A;  4H1Y P;  4H2G A;  2Q8U A;  2HY1 A;  3QFK A;  1FJM A;  2HYO A;  5JJT A;  2QFP A;  5B8I A;  1HO5 A;  3PSN A;  2GJU A;  3H67 A;  2ZBM A;  4H2I A;  2DXL A;  4IYP C;  4V0W A;  3H62 B;  1SU1 A;  2O8A A;  4FBK A;  4LTY A;  3E7B A;  4G9J A;  4B2O A;  5JPE A;  3PSO A;  4Q7F A;  5IOH A;  4FCX A;  5INB A;  1IT6 A;  1NNW A;  3V4Y A;  4DT2 A;  4TUG A;  2IE3 C;  1S95 A;  2WDF A;  1XZW A;  3H64 A;  2BCD A;  3K7V C;  4KKZ A;  3KBP A;  3IVE A;  4F0Z A;  4ORC A;  2YVT A;  1WAR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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