2WDCA

Termus thermophilus sulfate thiohydrolase soxb in complex with glycerol
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
542
structure length
542
Chain Sequence
YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 194
structure length 542
sequence length 542
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdcA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdcA03
2P6BA 1S8EA 3QG5C 3H67A 3H62B 1QFCA 2Z72A 4HD0A 3RL3A 4H2BA 4LU9A 3ZU0A 4DT2A 3IVDA 2QFRA 3V4YA 1M63A 4FBWA 4I5LC 4H1YP 2WDDA 5JPFA 1W24A 1T70A 5JPEA 2BCDA 3C9FA 4H2GA 2QJCA 5EQVA 4UWQA 2IE4C 5B8IA 2USHA 3LL8A 4TUIA 4B2OA 3THNA 4MP0A 2O8AA 4G9JA 2O8GA 2NYMC 3DSCA 4IYPC 4Q7FA 1WARA 4KKZA 3THOB 4MOYA 2HYOA 4I5NC 1OIDA 3HVQA 3H66A 5HPEA 4NZVA 1TCOA 2YVTA 4MOVA 3IVEA 1OI8A 5J28A 1S3LA 1IT6A 4IL1A 4V0WA 4ZVZA 3C5WC 3IB8A 1UF3A 3EGHA 4O5GA 4UT2A 1HO5A 2CV9A 1NNWA 1II7A 4FBKA 1JK7A 2HY1A 3AUZA 1T71A 3JYFA 3PSOA 1USHA 1Z2WA 1V73A 2DFJA 4XPNA 3QFMA 1S3MA 3H61A 2R17A 1QHWA 4O24A 4ORAA 5GTUA 5C1VA 3ZTVA 3QFOA 4DHLA 3T1IA 3AV0A 2Q8UA 4DSYA 4ZX2A 2ZBMA 2XMOA 3H64A 3RL4A 4M0VA 4UT3B 3H69A 2WDCA 2KKNA 4LTYA 5DNYA 3H63A 1FJMA 3ICFA 2BDXA 2A22A 3N5UA 1S70A 1S3NA 4H2IA 1AUIA 3FGAC 4WWLA 3QFNA 4YKEA 1HPUA 3P71C 2HYPA 4JA7A 1SU1A 2IE3C 2AHDA 3H68A 4H2FA 4UT3A 4V0XA 1HP1A 3QFKA 3RL5A 3K7VC 1XM7A 5JJTA 3RQZA 1G5BA 1XZWA 4V0VA 4TUGA 1OIEA 1Z2XA 3K7WC 1KBPA 2NXFA 4H1SA 2Z06A 4FCXA 1MF8A 1S95A 2NYLC 4OR9A 3IB7A 3PSNA 2Z1AA 1UTEA 3GVEA 2IAEC 5IOHA 3CK2A 4ORCA 3TGHA 4FBQA 3E7BA 4ORBA 5F3WA 5INBA 3KBPA 2WDEA 3H60A 2NPPC 2QFPA 2WDFA 3E7AA 4KBPA 3EGGA 3DSDA 1WAO1 4F0ZA 3DW8C 4J6OA 2GJUA 4O4KA 2BQ8X 4LACC 4O43A 1U32A 2JOGA 4JA9A
chains in the Genus database with same CATH superfamily
2P6BA 1S8EA 3QG5C 3H67A 3H62B 1QFCA 2Z72A 3E0JA 4HD0A 4H2BA 4LU9A 3RL3A 3ZU0A 4DT2A 2YEQA 3IVDA 2QFRA 3V4YA 1M63A 4FBWA 4I5LC 4H1YP 2WDDA 5JPFA 1W24A 1T70A 5JPEA 2BCDA 3C9FA 4H2GA 2QJCA 2ZOAA 5EQVA 4UWQA 2IE4C 5B8IA 2USHA 3LL8A 4TUIA 4B2OA 3THNA 4MP0A 2O8AA 3FLOA 4G9JA 2DXLA 2O8GA 2NYMC 3DSCA 4IYPC 4Q7FA 1WARA 4KKZA 3THOB 4MOYA 2HYOA 4I5NC 1OIDA 3HVQA 3H66A 3D03A 4NZVA 1TCOA 2YVTA 5HPEA 4MOVA 3IVEA 1OI8A 5J28A 1S3LA 1IT6A 4IL1A 4V0WA 4ZVZA 3C5WC 3IB8A 1UF3A 3EGHA 4O5GA 4UT2A 1HO5A 2CV9A 1NNWA 1II7A 4FBKA 1JK7A 2HY1A 3AUZA 1T71A 3JYFA 3PSOA 1USHA 1Z2WA 1V73A 2DFJA 4XPNA 3QFMA 1S3MA 2DXNA 3H61A 2R17A 1QHWA 4O24A 4ORAA 5GTUA 5C1VA 3ZTVA 3QFOA 4DHLA 3T1IA 3AV0A 2Q8UA 4DSYA 4ZX2A 2ZBMA 2XMOA 3H64A 3RL4A 4M0VA 4UT3B 3H69A 2WDCA 2KKNA 4LTYA 5DNYA 3H63A 1FJMA 3ICFA 2BDXA 2A22A 3N5UA 1S70A 1S3NA 4H2IA 1AUIA 3FGAC 4WWLA 3QFNA 4YKEA 1HPUA 3P71C 2HYPA 4JA7A 1SU1A 2IE3C 2AHDA 3H68A 4H2FA 4UT3A 4V0XA 1HP1A 3QFKA 3RL5A 3K7VC 1XM7A 5JJTA 3RQZA 1G5BA 1XZWA 4V0VA 4TUGA 1OIEA 1Z2XA 3K7WC 1KBPA 2NXFA 4H1SA 2Z06A 4FCXA 1MF8A 1S95A 2NYLC 4OR9A 3IB7A 3PSNA 2Z1AA 1UTEA 3GVEA 2IAEC 5IOHA 3CK2A 4ORCA 3TGHA 4FBQA 3E7BA 4ORBA 5F3WA 2ZO9B 3KBPA 2WDEA 5INBA 3H60A 2NPPC 2QFPA 2WDFA 3E7AA 4KBPA 3EGGA 3DSDA 1WAO1 4F0ZA 3DW8C 4J6OA 2GJUA 4O4KA 2BQ8X 4LACC 4O43A 1U32A 2JOGA 4JA9A
chains in the Genus database with same CATH topology
2P6BA 1S8EA 3QG5C 3H67A 3H62B 1QFCA 2Z72A 3E0JA 4HD0A 4H2BA 4LU9A 3RL3A 3ZU0A 4DT2A 2YEQA 3IVDA 2QFRA 3V4YA 1M63A 4FBWA 4I5LC 4H1YP 2WDDA 5JPFA 1W24A 1T70A 5JPEA 2BCDA 3C9FA 4H2GA 2QJCA 2ZOAA 5EQVA 4UWQA 2IE4C 5B8IA 2USHA 3LL8A 4TUIA 4B2OA 3THNA 4MP0A 2O8AA 3FLOA 4G9JA 2DXLA 2O8GA 2NYMC 3DSCA 4IYPC 4Q7FA 1WARA 4KKZA 3THOB 4MOYA 2HYOA 4I5NC 1OIDA 3HVQA 3H66A 3D03A 4NZVA 1TCOA 2YVTA 5HPEA 4MOVA 3IVEA 1OI8A 5J28A 1S3LA 1IT6A 4IL1A 4V0WA 4ZVZA 3C5WC 3IB8A 1UF3A 3EGHA 4O5GA 4UT2A 1HO5A 2CV9A 1NNWA 1II7A 4FBKA 1JK7A 2HY1A 3AUZA 1T71A 3JYFA 3PSOA 1USHA 1Z2WA 1V73A 2DFJA 4XPNA 3QFMA 1S3MA 2DXNA 3H61A 2R17A 1QHWA 4O24A 4ORAA 5GTUA 5C1VA 3ZTVA 3QFOA 4DHLA 3T1IA 3AV0A 2Q8UA 4DSYA 4ZX2A 2ZBMA 2XMOA 3H64A 3RL4A 4M0VA 4UT3B 3H69A 2WDCA 2KKNA 4LTYA 5DNYA 3H63A 1FJMA 3ICFA 2BDXA 2A22A 3N5UA 1S70A 1S3NA 4H2IA 1AUIA 3FGAC 4WWLA 3QFNA 4YKEA 1HPUA 3P71C 2HYPA 4JA7A 1SU1A 2IE3C 2AHDA 3H68A 4H2FA 4UT3A 4V0XA 1HP1A 3QFKA 3RL5A 3K7VC 1XM7A 5JJTA 3RQZA 1G5BA 1XZWA 4V0VA 4TUGA 1OIEA 1Z2XA 3K7WC 1KBPA 2NXFA 4H1SA 2Z06A 4FCXA 1MF8A 1S95A 2NYLC 4OR9A 3IB7A 3PSNA 2Z1AA 1UTEA 3GVEA 2IAEC 5IOHA 3CK2A 4ORCA 3TGHA 4FBQA 3E7BA 4ORBA 5F3WA 2ZO9B 3KBPA 2WDEA 5INBA 3H60A 2NPPC 2QFPA 2WDFA 3E7AA 4KBPA 3EGGA 3DSDA 1WAO1 4F0ZA 3DW8C 4J6OA 2GJUA 4O4KA 2BQ8X 4LACC 4O43A 1U32A 2JOGA 4JA9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6B A;  1S8E A;  3QG5 C;  3H67 A;  3H62 B;  1QFC A;  2Z72 A;  4HD0 A;  3RL3 A;  4H2B A;  4LU9 A;  3ZU0 A;  4DT2 A;  3IVD A;  2QFR A;  3V4Y A;  1M63 A;  4FBW A;  4I5L C;  4H1Y P;  2WDD A;  5JPF A;  1W24 A;  1T70 A;  5JPE A;  2BCD A;  3C9F A;  4H2G A;  2QJC A;  5EQV A;  4UWQ A;  2IE4 C;  5B8I A;  2USH A;  3LL8 A;  4TUI A;  4B2O A;  3THN A;  4MP0 A;  2O8A A;  4G9J A;  2O8G A;  2NYM C;  3DSC A;  4IYP C;  4Q7F A;  1WAR A;  4KKZ A;  3THO B;  4MOY A;  2HYO A;  4I5N C;  1OID A;  3HVQ A;  3H66 A;  5HPE A;  4NZV A;  1TCO A;  2YVT A;  4MOV A;  3IVE A;  1OI8 A;  5J28 A;  1S3L A;  1IT6 A;  4IL1 A;  4V0W A;  4ZVZ A;  3C5W C;  3IB8 A;  1UF3 A;  3EGH A;  4O5G A;  4UT2 A;  1HO5 A;  2CV9 A;  1NNW A;  1II7 A;  4FBK A;  1JK7 A;  2HY1 A;  3AUZ A;  1T71 A;  3JYF A;  3PSO A;  1USH A;  1Z2W A;  1V73 A;  2DFJ A;  4XPN A;  3QFM A;  1S3M A;  3H61 A;  2R17 A;  1QHW A;  4O24 A;  4ORA A;  5GTU A;  5C1V A;  3ZTV A;  3QFO A;  4DHL A;  3T1I A;  3AV0 A;  2Q8U A;  4DSY A;  4ZX2 A;  2ZBM A;  2XMO A;  3H64 A;  3RL4 A;  4M0V A;  4UT3 B;  3H69 A;  2WDC A;  2KKN A;  4LTY A;  5DNY A;  3H63 A;  1FJM A;  3ICF A;  2BDX A;  2A22 A;  3N5U A;  1S70 A;  1S3N A;  4H2I A;  1AUI A;  3FGA C;  4WWL A;  3QFN A;  4YKE A;  1HPU A;  3P71 C;  2HYP A;  4JA7 A;  1SU1 A;  2IE3 C;  2AHD A;  3H68 A;  4H2F A;  4UT3 A;  4V0X A;  1HP1 A;  3QFK A;  3RL5 A;  3K7V C;  1XM7 A;  5JJT A;  3RQZ A;  1G5B A;  1XZW A;  4V0V A;  4TUG A;  1OIE A;  1Z2X A;  3K7W C;  1KBP A;  2NXF A;  4H1S A;  2Z06 A;  4FCX A;  1MF8 A;  1S95 A;  2NYL C;  4OR9 A;  3IB7 A;  3PSN A;  2Z1A A;  1UTE A;  3GVE A;  2IAE C;  5IOH A;  3CK2 A;  4ORC A;  3TGH A;  4FBQ A;  3E7B A;  4ORB A;  5F3W A;  5INB A;  3KBP A;  2WDE A;  3H60 A;  2NPP C;  2QFP A;  2WDF A;  3E7A A;  4KBP A;  3EGG A;  3DSD A;  1WAO 1;  4F0Z A;  3DW8 C;  4J6O A;  2GJU A;  4O4K A;  2BQ8 X;  4LAC C;  4O43 A;  1U32 A;  2JOG A;  4JA9 A; 
#chains in the Genus database with same CATH topology
 2P6B A;  1S8E A;  3QG5 C;  3H67 A;  3H62 B;  1QFC A;  2Z72 A;  3E0J A;  4HD0 A;  4H2B A;  4LU9 A;  3RL3 A;  3ZU0 A;  4DT2 A;  2YEQ A;  3IVD A;  2QFR A;  3V4Y A;  1M63 A;  4FBW A;  4I5L C;  4H1Y P;  2WDD A;  5JPF A;  1W24 A;  1T70 A;  5JPE A;  2BCD A;  3C9F A;  4H2G A;  2QJC A;  2ZOA A;  5EQV A;  4UWQ A;  2IE4 C;  5B8I A;  2USH A;  3LL8 A;  4TUI A;  4B2O A;  3THN A;  4MP0 A;  2O8A A;  3FLO A;  4G9J A;  2DXL A;  2O8G A;  2NYM C;  3DSC A;  4IYP C;  4Q7F A;  1WAR A;  4KKZ A;  3THO B;  4MOY A;  2HYO A;  4I5N C;  1OID A;  3HVQ A;  3H66 A;  3D03 A;  4NZV A;  1TCO A;  2YVT A;  5HPE A;  4MOV A;  3IVE A;  1OI8 A;  5J28 A;  1S3L A;  1IT6 A;  4IL1 A;  4V0W A;  4ZVZ A;  3C5W C;  3IB8 A;  1UF3 A;  3EGH A;  4O5G A;  4UT2 A;  1HO5 A;  2CV9 A;  1NNW A;  1II7 A;  4FBK A;  1JK7 A;  2HY1 A;  3AUZ A;  1T71 A;  3JYF A;  3PSO A;  1USH A;  1Z2W A;  1V73 A;  2DFJ A;  4XPN A;  3QFM A;  1S3M A;  2DXN A;  3H61 A;  2R17 A;  1QHW A;  4O24 A;  4ORA A;  5GTU A;  5C1V A;  3ZTV A;  3QFO A;  4DHL A;  3T1I A;  3AV0 A;  2Q8U A;  4DSY A;  4ZX2 A;  2ZBM A;  2XMO A;  3H64 A;  3RL4 A;  4M0V A;  4UT3 B;  3H69 A;  2WDC A;  2KKN A;  4LTY A;  5DNY A;  3H63 A;  1FJM A;  3ICF A;  2BDX A;  2A22 A;  3N5U A;  1S70 A;  1S3N A;  4H2I A;  1AUI A;  3FGA C;  4WWL A;  3QFN A;  4YKE A;  1HPU A;  3P71 C;  2HYP A;  4JA7 A;  1SU1 A;  2IE3 C;  2AHD A;  3H68 A;  4H2F A;  4UT3 A;  4V0X A;  1HP1 A;  3QFK A;  3RL5 A;  3K7V C;  1XM7 A;  5JJT A;  3RQZ A;  1G5B A;  1XZW A;  4V0V A;  4TUG A;  1OIE A;  1Z2X A;  3K7W C;  1KBP A;  2NXF A;  4H1S A;  2Z06 A;  4FCX A;  1MF8 A;  1S95 A;  2NYL C;  4OR9 A;  3IB7 A;  3PSN A;  2Z1A A;  1UTE A;  3GVE A;  2IAE C;  5IOH A;  3CK2 A;  4ORC A;  3TGH A;  4FBQ A;  3E7B A;  4ORB A;  5F3W A;  2ZO9 B;  3KBP A;  2WDE A;  5INB A;  3H60 A;  2NPP C;  2QFP A;  2WDF A;  3E7A A;  4KBP A;  3EGG A;  3DSD A;  1WAO 1;  4F0Z A;  3DW8 C;  4J6O A;  2GJU A;  4O4K A;  2BQ8 X;  4LAC C;  4O43 A;  1U32 A;  2JOG A;  4JA9 A; 
#chains in the Genus database with same CATH homology
 2P6B A;  1S8E A;  3QG5 C;  3H67 A;  3H62 B;  1QFC A;  2Z72 A;  3E0J A;  4HD0 A;  4H2B A;  4LU9 A;  3RL3 A;  3ZU0 A;  4DT2 A;  2YEQ A;  3IVD A;  2QFR A;  3V4Y A;  1M63 A;  4FBW A;  4I5L C;  4H1Y P;  2WDD A;  5JPF A;  1W24 A;  1T70 A;  5JPE A;  2BCD A;  3C9F A;  4H2G A;  2QJC A;  2ZOA A;  5EQV A;  4UWQ A;  2IE4 C;  5B8I A;  2USH A;  3LL8 A;  4TUI A;  4B2O A;  3THN A;  4MP0 A;  2O8A A;  3FLO A;  4G9J A;  2DXL A;  2O8G A;  2NYM C;  3DSC A;  4IYP C;  4Q7F A;  1WAR A;  4KKZ A;  3THO B;  4MOY A;  2HYO A;  4I5N C;  1OID A;  3HVQ A;  3H66 A;  3D03 A;  4NZV A;  1TCO A;  2YVT A;  5HPE A;  4MOV A;  3IVE A;  1OI8 A;  5J28 A;  1S3L A;  1IT6 A;  4IL1 A;  4V0W A;  4ZVZ A;  3C5W C;  3IB8 A;  1UF3 A;  3EGH A;  4O5G A;  4UT2 A;  1HO5 A;  2CV9 A;  1NNW A;  1II7 A;  4FBK A;  1JK7 A;  2HY1 A;  3AUZ A;  1T71 A;  3JYF A;  3PSO A;  1USH A;  1Z2W A;  1V73 A;  2DFJ A;  4XPN A;  3QFM A;  1S3M A;  2DXN A;  3H61 A;  2R17 A;  1QHW A;  4O24 A;  4ORA A;  5GTU A;  5C1V A;  3ZTV A;  3QFO A;  4DHL A;  3T1I A;  3AV0 A;  2Q8U A;  4DSY A;  4ZX2 A;  2ZBM A;  2XMO A;  3H64 A;  3RL4 A;  4M0V A;  4UT3 B;  3H69 A;  2WDC A;  2KKN A;  4LTY A;  5DNY A;  3H63 A;  1FJM A;  3ICF A;  2BDX A;  2A22 A;  3N5U A;  1S70 A;  1S3N A;  4H2I A;  1AUI A;  3FGA C;  4WWL A;  3QFN A;  4YKE A;  1HPU A;  3P71 C;  2HYP A;  4JA7 A;  1SU1 A;  2IE3 C;  2AHD A;  3H68 A;  4H2F A;  4UT3 A;  4V0X A;  1HP1 A;  3QFK A;  3RL5 A;  3K7V C;  1XM7 A;  5JJT A;  3RQZ A;  1G5B A;  1XZW A;  4V0V A;  4TUG A;  1OIE A;  1Z2X A;  3K7W C;  1KBP A;  2NXF A;  4H1S A;  2Z06 A;  4FCX A;  1MF8 A;  1S95 A;  2NYL C;  4OR9 A;  3IB7 A;  3PSN A;  2Z1A A;  1UTE A;  3GVE A;  2IAE C;  5IOH A;  3CK2 A;  4ORC A;  3TGH A;  4FBQ A;  3E7B A;  4ORB A;  5F3W A;  2ZO9 B;  3KBP A;  2WDE A;  5INB A;  3H60 A;  2NPP C;  2QFP A;  2WDF A;  3E7A A;  4KBP A;  3EGG A;  3DSD A;  1WAO 1;  4F0Z A;  3DW8 C;  4J6O A;  2GJU A;  4O4K A;  2BQ8 X;  4LAC C;  4O43 A;  1U32 A;  2JOG A;  4JA9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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