4UWQA

Crystal structure of the disulfide-linked complex of the thiosulfodyrolase soxb with the carrier-protein soxyz from thermus thermophilus
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
548
structure length
548
Chain Sequence
EDPRSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHCEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Basis for Specificity and Promiscuity in a Carrier Protein/Enzyme System from the Sulfur Cycle
pubmed doi rcsb
source organism Thermus thermophilus hb27
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 163
structure length 548
sequence length 548
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2014-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 4uwqA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 4uwqA03
5JJTA 2HYOA 4B2OA 2Z72A 4YKEA 5HPEA 1QFCA 2NXFA 1II7A 2AHDA 3T1IA 1Z2WA 3QFKA 3DSCA 3H63A 3IVDA 5JPFA 3FGAC 3H66A 4ZVZA 2GJUA 4Q7FA 2CV9A 3H69A 3RL5A 2ZBMA 3H67A 3QFMA 4LACC 3H68A 4MOVA 3C9FA 2KKNA 4FCXA 1MF8A 2NYLC 4G9JA 3LL8A 4O24A 1S3NA 1S3LA 2NPPC 3GVEA 4H2IA 3AUZA 2BDXA 1FJMA 2Z06A 3E7BA 2QFPA 3H61A 3IB8A 3QG5C 4ZX2A 4O43A 4IL1A 2Z1AA 4HD0A 5B8IA 2IAEC 4H2BA 3RL4A 4UT3A 4ORBA 1M63A 1NNWA 2JOGA 1KBPA 3RL3A 1QHWA 4ORCA 4I5NC 1T71A 2P6BA 1UF3A 2XMOA 3K7WC 1HO5A 4XPNA 3EGGA 4KBPA 2USHA 5INBA 4TUGA 4O4KA 2WDDA 3HVQA 4ORAA 2NYMC 3ICFA 3KBPA 3CK2A 4OR9A 4WWLA 1OIDA 4H2GA 4NZVA 2QJCA 3N5UA 4J6OA 3THNA 1OI8A 4O5GA 2IE4C 3QFOA 4H1YP 4V0XA 2YVTA 1UTEA 4MP0A 3E7AA 1T70A 3JYFA 1V73A 3P71C 3H64A 1S3MA 2WDFA 1XM7A 3ZU0A 1S95A 1U32A 2WDCA 3C5WC 2A22A 2BCDA 4UT2A 3THOB 4UT3B 1OIEA 5IOHA 4FBQA 4LU9A 1W24A 5DNYA 1HPUA 4JA9A 1WAO1 1SU1A 3H60A 1G5BA 3IB7A 1WARA 2IE3C 4H1SA 4I5LC 4V0WA 4V0VA 4FBKA 2QFRA 4IYPC 5C1VA 4F0ZA 5J28A 4MOYA 1IT6A 1AUIA 3K7VC 3TGHA 3PSOA 3RQZA 1HP1A 2WDEA 1S70A 3IVEA 5GTUA 2BQ8X 2O8AA 5F3WA 4H2FA 3PSNA 1S8EA 3DSDA 3V4YA 1USHA 3AV0A 4M0VA 1TCOA 2Q8UA 1JK7A 1XZWA 4DHLA 3QFNA 4TUIA 3DW8C 3H62B 4DSYA 1Z2XA 3EGHA 5EQVA 3ZTVA 2O8GA 2R17A 2DFJA 4UWQA 2HY1A 4FBWA 4DT2A 2HYPA 4LTYA 4KKZA 5JPEA 4JA7A
chains in the Genus database with same CATH superfamily
5JJTA 2HYOA 4B2OA 2Z72A 4YKEA 5HPEA 1QFCA 2NXFA 1II7A 2AHDA 3T1IA 1Z2WA 3QFKA 3DSCA 3H63A 3IVDA 5JPFA 3FGAC 3H66A 4ZVZA 2GJUA 4Q7FA 2CV9A 3H69A 3RL5A 2ZBMA 3H67A 3QFMA 4LACC 2DXLA 3H68A 4MOVA 3C9FA 2KKNA 4FCXA 1MF8A 2NYLC 4G9JA 3LL8A 4O24A 1S3NA 1S3LA 2NPPC 3GVEA 4H2IA 3AUZA 2BDXA 1FJMA 2Z06A 3E7BA 2QFPA 3H61A 3IB8A 3QG5C 4ZX2A 4O43A 4IL1A 2YEQA 2Z1AA 4HD0A 5B8IA 2IAEC 4H2BA 3RL4A 4UT3A 4ORBA 1M63A 1NNWA 2JOGA 1KBPA 3RL3A 1QHWA 4ORCA 4I5NC 1T71A 2P6BA 1UF3A 2XMOA 3K7WC 1HO5A 4XPNA 3EGGA 4KBPA 2USHA 5INBA 4TUGA 4O4KA 2WDDA 3HVQA 4ORAA 2NYMC 3ICFA 3KBPA 3CK2A 4OR9A 4WWLA 1OIDA 4H2GA 4NZVA 2QJCA 3N5UA 4J6OA 3THNA 1OI8A 4O5GA 2IE4C 3QFOA 4H1YP 4V0XA 2YVTA 1UTEA 4MP0A 2ZOAA 3E7AA 1T70A 3JYFA 1V73A 3P71C 3H64A 1S3MA 2WDFA 1XM7A 3ZU0A 1S95A 1U32A 2WDCA 3C5WC 2A22A 2BCDA 4UT2A 3THOB 4UT3B 1OIEA 5IOHA 4FBQA 4LU9A 1W24A 5DNYA 1HPUA 4JA9A 1WAO1 1SU1A 3H60A 1G5BA 3IB7A 1WARA 2IE3C 4H1SA 4I5LC 4V0WA 4V0VA 4FBKA 3D03A 2QFRA 4IYPC 5C1VA 4F0ZA 5J28A 4MOYA 1IT6A 1AUIA 3K7VC 3TGHA 3PSOA 3RQZA 1HP1A 2WDEA 1S70A 3IVEA 5GTUA 2BQ8X 2O8AA 5F3WA 4H2FA 3PSNA 1S8EA 3DSDA 3V4YA 2ZO9B 1USHA 3E0JA 3AV0A 4M0VA 1TCOA 2Q8UA 1JK7A 1XZWA 4DHLA 3QFNA 4TUIA 3DW8C 3H62B 4DSYA 1Z2XA 3EGHA 5EQVA 3ZTVA 2O8GA 2R17A 2DFJA 2DXNA 4UWQA 2HY1A 3FLOA 4FBWA 2HYPA 4LTYA 4DT2A 4KKZA 5JPEA 4JA7A
chains in the Genus database with same CATH topology
5JJTA 2HYOA 4B2OA 2Z72A 4YKEA 5HPEA 1QFCA 2NXFA 1II7A 2AHDA 3T1IA 1Z2WA 3QFKA 3DSCA 3H63A 3IVDA 5JPFA 3FGAC 3H66A 4ZVZA 2GJUA 4Q7FA 2CV9A 3H69A 3RL5A 2ZBMA 3H67A 3QFMA 4LACC 2DXLA 3H68A 4MOVA 3C9FA 2KKNA 4FCXA 1MF8A 2NYLC 4G9JA 3LL8A 4O24A 1S3NA 1S3LA 2NPPC 3GVEA 4H2IA 3AUZA 2BDXA 1FJMA 2Z06A 3E7BA 2QFPA 3H61A 3IB8A 3QG5C 4ZX2A 4O43A 4IL1A 2YEQA 2Z1AA 4HD0A 5B8IA 2IAEC 4H2BA 3RL4A 4UT3A 4ORBA 1M63A 1NNWA 2JOGA 1KBPA 3RL3A 1QHWA 4ORCA 4I5NC 1T71A 2P6BA 1UF3A 2XMOA 3K7WC 1HO5A 4XPNA 3EGGA 4KBPA 2USHA 5INBA 4TUGA 4O4KA 2WDDA 3HVQA 4ORAA 2NYMC 3ICFA 3KBPA 3CK2A 4OR9A 4WWLA 1OIDA 4H2GA 4NZVA 2QJCA 3N5UA 4J6OA 3THNA 1OI8A 4O5GA 2IE4C 3QFOA 4H1YP 4V0XA 2YVTA 1UTEA 4MP0A 2ZOAA 3E7AA 1T70A 3JYFA 1V73A 3P71C 3H64A 1S3MA 2WDFA 1XM7A 3ZU0A 1S95A 1U32A 2WDCA 3C5WC 2A22A 2BCDA 4UT2A 3THOB 4UT3B 1OIEA 5IOHA 4FBQA 4LU9A 1W24A 5DNYA 1HPUA 4JA9A 1WAO1 1SU1A 3H60A 1G5BA 3IB7A 1WARA 2IE3C 4H1SA 4I5LC 4V0WA 4V0VA 4FBKA 3D03A 2QFRA 4IYPC 5C1VA 4F0ZA 5J28A 4MOYA 1IT6A 1AUIA 3K7VC 3TGHA 3PSOA 3RQZA 1HP1A 2WDEA 1S70A 3IVEA 5GTUA 2BQ8X 2O8AA 5F3WA 4H2FA 3PSNA 1S8EA 3DSDA 3V4YA 2ZO9B 1USHA 3E0JA 3AV0A 4M0VA 1TCOA 2Q8UA 1JK7A 1XZWA 4DHLA 3QFNA 4TUIA 3DW8C 3H62B 4DSYA 1Z2XA 3EGHA 5EQVA 3ZTVA 2O8GA 2R17A 2DFJA 2DXNA 4UWQA 2HY1A 3FLOA 4FBWA 2HYPA 4LTYA 4DT2A 4KKZA 5JPEA 4JA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JJT A;  2HYO A;  4B2O A;  2Z72 A;  4YKE A;  5HPE A;  1QFC A;  2NXF A;  1II7 A;  2AHD A;  3T1I A;  1Z2W A;  3QFK A;  3DSC A;  3H63 A;  3IVD A;  5JPF A;  3FGA C;  3H66 A;  4ZVZ A;  2GJU A;  4Q7F A;  2CV9 A;  3H69 A;  3RL5 A;  2ZBM A;  3H67 A;  3QFM A;  4LAC C;  3H68 A;  4MOV A;  3C9F A;  2KKN A;  4FCX A;  1MF8 A;  2NYL C;  4G9J A;  3LL8 A;  4O24 A;  1S3N A;  1S3L A;  2NPP C;  3GVE A;  4H2I A;  3AUZ A;  2BDX A;  1FJM A;  2Z06 A;  3E7B A;  2QFP A;  3H61 A;  3IB8 A;  3QG5 C;  4ZX2 A;  4O43 A;  4IL1 A;  2Z1A A;  4HD0 A;  5B8I A;  2IAE C;  4H2B A;  3RL4 A;  4UT3 A;  4ORB A;  1M63 A;  1NNW A;  2JOG A;  1KBP A;  3RL3 A;  1QHW A;  4ORC A;  4I5N C;  1T71 A;  2P6B A;  1UF3 A;  2XMO A;  3K7W C;  1HO5 A;  4XPN A;  3EGG A;  4KBP A;  2USH A;  5INB A;  4TUG A;  4O4K A;  2WDD A;  3HVQ A;  4ORA A;  2NYM C;  3ICF A;  3KBP A;  3CK2 A;  4OR9 A;  4WWL A;  1OID A;  4H2G A;  4NZV A;  2QJC A;  3N5U A;  4J6O A;  3THN A;  1OI8 A;  4O5G A;  2IE4 C;  3QFO A;  4H1Y P;  4V0X A;  2YVT A;  1UTE A;  4MP0 A;  3E7A A;  1T70 A;  3JYF A;  1V73 A;  3P71 C;  3H64 A;  1S3M A;  2WDF A;  1XM7 A;  3ZU0 A;  1S95 A;  1U32 A;  2WDC A;  3C5W C;  2A22 A;  2BCD A;  4UT2 A;  3THO B;  4UT3 B;  1OIE A;  5IOH A;  4FBQ A;  4LU9 A;  1W24 A;  5DNY A;  1HPU A;  4JA9 A;  1WAO 1;  1SU1 A;  3H60 A;  1G5B A;  3IB7 A;  1WAR A;  2IE3 C;  4H1S A;  4I5L C;  4V0W A;  4V0V A;  4FBK A;  2QFR A;  4IYP C;  5C1V A;  4F0Z A;  5J28 A;  4MOY A;  1IT6 A;  1AUI A;  3K7V C;  3TGH A;  3PSO A;  3RQZ A;  1HP1 A;  2WDE A;  1S70 A;  3IVE A;  5GTU A;  2BQ8 X;  2O8A A;  5F3W A;  4H2F A;  3PSN A;  1S8E A;  3DSD A;  3V4Y A;  1USH A;  3AV0 A;  4M0V A;  1TCO A;  2Q8U A;  1JK7 A;  1XZW A;  4DHL A;  3QFN A;  4TUI A;  3DW8 C;  3H62 B;  4DSY A;  1Z2X A;  3EGH A;  5EQV A;  3ZTV A;  2O8G A;  2R17 A;  2DFJ A;  4UWQ A;  2HY1 A;  4FBW A;  4DT2 A;  2HYP A;  4LTY A;  4KKZ A;  5JPE A;  4JA7 A; 
#chains in the Genus database with same CATH topology
 5JJT A;  2HYO A;  4B2O A;  2Z72 A;  4YKE A;  5HPE A;  1QFC A;  2NXF A;  1II7 A;  2AHD A;  3T1I A;  1Z2W A;  3QFK A;  3DSC A;  3H63 A;  3IVD A;  5JPF A;  3FGA C;  3H66 A;  4ZVZ A;  2GJU A;  4Q7F A;  2CV9 A;  3H69 A;  3RL5 A;  2ZBM A;  3H67 A;  3QFM A;  4LAC C;  2DXL A;  3H68 A;  4MOV A;  3C9F A;  2KKN A;  4FCX A;  1MF8 A;  2NYL C;  4G9J A;  3LL8 A;  4O24 A;  1S3N A;  1S3L A;  2NPP C;  3GVE A;  4H2I A;  3AUZ A;  2BDX A;  1FJM A;  2Z06 A;  3E7B A;  2QFP A;  3H61 A;  3IB8 A;  3QG5 C;  4ZX2 A;  4O43 A;  4IL1 A;  2YEQ A;  2Z1A A;  4HD0 A;  5B8I A;  2IAE C;  4H2B A;  3RL4 A;  4UT3 A;  4ORB A;  1M63 A;  1NNW A;  2JOG A;  1KBP A;  3RL3 A;  1QHW A;  4ORC A;  4I5N C;  1T71 A;  2P6B A;  1UF3 A;  2XMO A;  3K7W C;  1HO5 A;  4XPN A;  3EGG A;  4KBP A;  2USH A;  5INB A;  4TUG A;  4O4K A;  2WDD A;  3HVQ A;  4ORA A;  2NYM C;  3ICF A;  3KBP A;  3CK2 A;  4OR9 A;  4WWL A;  1OID A;  4H2G A;  4NZV A;  2QJC A;  3N5U A;  4J6O A;  3THN A;  1OI8 A;  4O5G A;  2IE4 C;  3QFO A;  4H1Y P;  4V0X A;  2YVT A;  1UTE A;  4MP0 A;  2ZOA A;  3E7A A;  1T70 A;  3JYF A;  1V73 A;  3P71 C;  3H64 A;  1S3M A;  2WDF A;  1XM7 A;  3ZU0 A;  1S95 A;  1U32 A;  2WDC A;  3C5W C;  2A22 A;  2BCD A;  4UT2 A;  3THO B;  4UT3 B;  1OIE A;  5IOH A;  4FBQ A;  4LU9 A;  1W24 A;  5DNY A;  1HPU A;  4JA9 A;  1WAO 1;  1SU1 A;  3H60 A;  1G5B A;  3IB7 A;  1WAR A;  2IE3 C;  4H1S A;  4I5L C;  4V0W A;  4V0V A;  4FBK A;  3D03 A;  2QFR A;  4IYP C;  5C1V A;  4F0Z A;  5J28 A;  4MOY A;  1IT6 A;  1AUI A;  3K7V C;  3TGH A;  3PSO A;  3RQZ A;  1HP1 A;  2WDE A;  1S70 A;  3IVE A;  5GTU A;  2BQ8 X;  2O8A A;  5F3W A;  4H2F A;  3PSN A;  1S8E A;  3DSD A;  3V4Y A;  2ZO9 B;  1USH A;  3E0J A;  3AV0 A;  4M0V A;  1TCO A;  2Q8U A;  1JK7 A;  1XZW A;  4DHL A;  3QFN A;  4TUI A;  3DW8 C;  3H62 B;  4DSY A;  1Z2X A;  3EGH A;  5EQV A;  3ZTV A;  2O8G A;  2R17 A;  2DFJ A;  2DXN A;  4UWQ A;  2HY1 A;  3FLO A;  4FBW A;  2HYP A;  4LTY A;  4DT2 A;  4KKZ A;  5JPE A;  4JA7 A; 
#chains in the Genus database with same CATH homology
 5JJT A;  2HYO A;  4B2O A;  2Z72 A;  4YKE A;  5HPE A;  1QFC A;  2NXF A;  1II7 A;  2AHD A;  3T1I A;  1Z2W A;  3QFK A;  3DSC A;  3H63 A;  3IVD A;  5JPF A;  3FGA C;  3H66 A;  4ZVZ A;  2GJU A;  4Q7F A;  2CV9 A;  3H69 A;  3RL5 A;  2ZBM A;  3H67 A;  3QFM A;  4LAC C;  2DXL A;  3H68 A;  4MOV A;  3C9F A;  2KKN A;  4FCX A;  1MF8 A;  2NYL C;  4G9J A;  3LL8 A;  4O24 A;  1S3N A;  1S3L A;  2NPP C;  3GVE A;  4H2I A;  3AUZ A;  2BDX A;  1FJM A;  2Z06 A;  3E7B A;  2QFP A;  3H61 A;  3IB8 A;  3QG5 C;  4ZX2 A;  4O43 A;  4IL1 A;  2YEQ A;  2Z1A A;  4HD0 A;  5B8I A;  2IAE C;  4H2B A;  3RL4 A;  4UT3 A;  4ORB A;  1M63 A;  1NNW A;  2JOG A;  1KBP A;  3RL3 A;  1QHW A;  4ORC A;  4I5N C;  1T71 A;  2P6B A;  1UF3 A;  2XMO A;  3K7W C;  1HO5 A;  4XPN A;  3EGG A;  4KBP A;  2USH A;  5INB A;  4TUG A;  4O4K A;  2WDD A;  3HVQ A;  4ORA A;  2NYM C;  3ICF A;  3KBP A;  3CK2 A;  4OR9 A;  4WWL A;  1OID A;  4H2G A;  4NZV A;  2QJC A;  3N5U A;  4J6O A;  3THN A;  1OI8 A;  4O5G A;  2IE4 C;  3QFO A;  4H1Y P;  4V0X A;  2YVT A;  1UTE A;  4MP0 A;  2ZOA A;  3E7A A;  1T70 A;  3JYF A;  1V73 A;  3P71 C;  3H64 A;  1S3M A;  2WDF A;  1XM7 A;  3ZU0 A;  1S95 A;  1U32 A;  2WDC A;  3C5W C;  2A22 A;  2BCD A;  4UT2 A;  3THO B;  4UT3 B;  1OIE A;  5IOH A;  4FBQ A;  4LU9 A;  1W24 A;  5DNY A;  1HPU A;  4JA9 A;  1WAO 1;  1SU1 A;  3H60 A;  1G5B A;  3IB7 A;  1WAR A;  2IE3 C;  4H1S A;  4I5L C;  4V0W A;  4V0V A;  4FBK A;  3D03 A;  2QFR A;  4IYP C;  5C1V A;  4F0Z A;  5J28 A;  4MOY A;  1IT6 A;  1AUI A;  3K7V C;  3TGH A;  3PSO A;  3RQZ A;  1HP1 A;  2WDE A;  1S70 A;  3IVE A;  5GTU A;  2BQ8 X;  2O8A A;  5F3W A;  4H2F A;  3PSN A;  1S8E A;  3DSD A;  3V4Y A;  2ZO9 B;  1USH A;  3E0J A;  3AV0 A;  4M0V A;  1TCO A;  2Q8U A;  1JK7 A;  1XZW A;  4DHL A;  3QFN A;  4TUI A;  3DW8 C;  3H62 B;  4DSY A;  1Z2X A;  3EGH A;  5EQV A;  3ZTV A;  2O8G A;  2R17 A;  2DFJ A;  2DXN A;  4UWQ A;  2HY1 A;  3FLO A;  4FBW A;  2HYP A;  4LTY A;  4DT2 A;  4KKZ A;  5JPE A;  4JA7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...