4UWQA

Crystal structure of the disulfide-linked complex of the thiosulfodyrolase soxb with the carrier-protein soxyz from thermus thermophilus
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
548
structure length
548
Chain Sequence
EDPRSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHCEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Basis for Specificity and Promiscuity in a Carrier Protein/Enzyme System from the Sulfur Cycle
pubmed doi rcsb
source organism Thermus thermophilus hb27
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 163
structure length 548
sequence length 548
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2014-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 4uwqA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 4uwqA03
3AV0A 4H2BA 4F0ZA 1II7A 4H2GA 3H63A 4OR9A 4KKZA 4FBQA 3H67A 4DHLA 1SU1A 4MP0A 1HP1A 1IT6A 3C5WC 3QG5C 3THNA 3H66A 1S3LA 2BDXA 1FJMA 3ZU0A 2WDCA 2P6BA 4LACC 3QFNA 2Z1AA 1W24A 3RQZA 3RL3A 4O4KA 1T70A 2ZBMA 4DT2A 3P71C 4WWLA 4ORCA 3PSNA 4DSYA 3IB7A 1XZWA 4O43A 4H1YP 3JYFA 1S95A 1USHA 4H1SA 2IAEC 2QFRA 2DFJA 4MOYA 3K7WC 3EGGA 3H68A 3ZTVA 3QFKA 4H2FA 5IOHA 1HPUA 4I5LC 3PSOA 2HYOA 3T1IA 3TGHA 1WAO1 1M63A 2IE3C 4TUIA 4MOVA 2Q8UA 4V0VA 4I5NC 5HPEA 2BQ8X 4UWQA 3DSDA 2JOGA 4G9JA 2R17A 2USHA 1Z2WA 1KBPA 3E7BA 4ZVZA 2GJUA 1S3MA 5JJTA 1AUIA 3ICFA 4IYPC 4V0XA 4H2IA 1NNWA 1S8EA 2HYPA 2IE4C 1Z2XA 2A22A 3FGAC 3THOB 4TUGA 3IVDA 1OIDA 3HVQA 3K7VC 1QFCA 3DW8C 1UF3A 3H60A 4J6OA 3QFOA 4FBWA 4O5GA 2NYLC 3H64A 3GVEA 2WDFA 4JA9A 5F3WA 4HD0A 2XMOA 1T71A 4UT3A 4FBKA 4LTYA 2AHDA 2NYMC 3V4YA 2WDEA 4UT2A 3H62B 4ZX2A 1S3NA 4KBPA 1TCOA 3AUZA 4FCXA 3CK2A 4IL1A 2Z72A 4ORBA 4M0VA 4UT3B 3RL4A 2NXFA 4JA7A 2KKNA 3EGHA 5EQVA 5INBA 3E7AA 3H69A 2BCDA 1G5BA 2CV9A 5JPFA 1XM7A 4LU9A 5C1VA 2QJCA 2O8GA 2YVTA 1HO5A 4YKEA 2HY1A 4O24A 4Q7FA 2Z06A 5DNYA 2QFPA 3RL5A 5GTUA 1UTEA 1MF8A 3LL8A 3N5UA 4ORAA 3H61A 2NPPC 1QHWA 2WDDA 1V73A 1OI8A 3IVEA 5B8IA 3C9FA 1OIEA 3QFMA 4XPNA 3IB8A 3KBPA 5JPEA 5J28A 1U32A 1S70A 4B2OA 3DSCA 1JK7A 1WARA 4V0WA 2O8AA 4NZVA
chains in the Genus database with same CATH superfamily
3AV0A 4H2BA 4F0ZA 1II7A 4H2GA 3H63A 4OR9A 4KKZA 4FBQA 3H67A 4DHLA 1SU1A 4MP0A 1HP1A 1IT6A 3C5WC 3QG5C 3THNA 3H66A 1S3LA 2BDXA 1FJMA 3ZU0A 2WDCA 2P6BA 4LACC 3QFNA 2Z1AA 1W24A 3RQZA 3RL3A 4O4KA 1T70A 2ZBMA 4DT2A 3P71C 4WWLA 4ORCA 3PSNA 3FLOA 4DSYA 3IB7A 1XZWA 4O43A 4H1YP 3JYFA 1S95A 1USHA 4H1SA 2IAEC 3E0JA 2QFRA 2DFJA 4MOYA 3K7WC 3EGGA 3H68A 3ZTVA 3QFKA 4H2FA 5IOHA 1HPUA 4I5LC 3PSOA 2HYOA 3T1IA 3TGHA 1WAO1 2DXNA 1M63A 2IE3C 4TUIA 4MOVA 2Q8UA 4V0VA 4I5NC 5HPEA 2BQ8X 4UWQA 3DSDA 2JOGA 4G9JA 2R17A 2USHA 1Z2WA 1KBPA 3E7BA 4ZVZA 2GJUA 1S3MA 5JJTA 1AUIA 3ICFA 4IYPC 4V0XA 4H2IA 1NNWA 1S8EA 2HYPA 2IE4C 1Z2XA 2A22A 3FGAC 3THOB 4TUGA 3IVDA 1OIDA 3HVQA 3K7VC 2ZOAA 1QFCA 3DW8C 1UF3A 3H60A 4J6OA 3QFOA 4FBWA 4O5GA 2NYLC 3H64A 3GVEA 2WDFA 4JA9A 5F3WA 4HD0A 2XMOA 1T71A 4UT3A 4FBKA 4LTYA 2AHDA 2NYMC 3V4YA 2ZO9B 2WDEA 4UT2A 3H62B 4ZX2A 1S3NA 4KBPA 1TCOA 3AUZA 4FCXA 3CK2A 4IL1A 2Z72A 4ORBA 4M0VA 4UT3B 3RL4A 2DXLA 2NXFA 4JA7A 2KKNA 3EGHA 5EQVA 5INBA 3E7AA 3H69A 2BCDA 1G5BA 2CV9A 5JPFA 1XM7A 3D03A 4LU9A 5C1VA 2QJCA 2O8GA 2YVTA 1HO5A 4YKEA 2HY1A 4O24A 4Q7FA 2Z06A 5DNYA 2QFPA 3RL5A 5GTUA 1UTEA 1MF8A 3LL8A 2YEQA 3N5UA 3H61A 4ORAA 2NPPC 1QHWA 2WDDA 1V73A 1OI8A 3IVEA 5B8IA 3C9FA 1OIEA 3QFMA 4XPNA 3IB8A 3KBPA 5JPEA 5J28A 1U32A 1S70A 4B2OA 3DSCA 1JK7A 1WARA 4V0WA 2O8AA 4NZVA
chains in the Genus database with same CATH topology
3AV0A 4H2BA 4F0ZA 1II7A 4H2GA 3H63A 4OR9A 4KKZA 4FBQA 3H67A 4DHLA 1SU1A 4MP0A 1HP1A 1IT6A 3C5WC 3QG5C 3THNA 3H66A 1S3LA 2BDXA 1FJMA 3ZU0A 2WDCA 2P6BA 4LACC 3QFNA 2Z1AA 1W24A 3RQZA 3RL3A 4O4KA 1T70A 2ZBMA 4DT2A 3P71C 4WWLA 4ORCA 3PSNA 3FLOA 4DSYA 3IB7A 1XZWA 4O43A 4H1YP 3JYFA 1S95A 1USHA 4H1SA 2IAEC 3E0JA 2QFRA 2DFJA 4MOYA 3K7WC 3EGGA 3H68A 3ZTVA 3QFKA 4H2FA 5IOHA 1HPUA 4I5LC 3PSOA 2HYOA 3T1IA 3TGHA 1WAO1 2DXNA 1M63A 2IE3C 4TUIA 4MOVA 2Q8UA 4V0VA 4I5NC 5HPEA 2BQ8X 4UWQA 3DSDA 2JOGA 4G9JA 2R17A 2USHA 1Z2WA 1KBPA 3E7BA 4ZVZA 2GJUA 1S3MA 5JJTA 1AUIA 3ICFA 4IYPC 4V0XA 4H2IA 1NNWA 1S8EA 2HYPA 2IE4C 1Z2XA 2A22A 3FGAC 3THOB 4TUGA 3IVDA 1OIDA 3HVQA 3K7VC 2ZOAA 1QFCA 3DW8C 1UF3A 3H60A 4J6OA 3QFOA 4FBWA 4O5GA 2NYLC 3H64A 3GVEA 2WDFA 4JA9A 5F3WA 4HD0A 2XMOA 1T71A 4UT3A 4FBKA 4LTYA 2AHDA 2NYMC 3V4YA 2ZO9B 2WDEA 4UT2A 3H62B 4ZX2A 1S3NA 4KBPA 1TCOA 3AUZA 4FCXA 3CK2A 4IL1A 2Z72A 4ORBA 4M0VA 4UT3B 3RL4A 2DXLA 2NXFA 4JA7A 2KKNA 3EGHA 5EQVA 5INBA 3E7AA 3H69A 2BCDA 1G5BA 2CV9A 5JPFA 1XM7A 3D03A 4LU9A 5C1VA 2QJCA 2O8GA 2YVTA 1HO5A 4YKEA 2HY1A 4O24A 4Q7FA 2Z06A 5DNYA 2QFPA 3RL5A 5GTUA 1UTEA 1MF8A 3LL8A 2YEQA 3N5UA 3H61A 4ORAA 2NPPC 1QHWA 2WDDA 1V73A 1OI8A 3IVEA 5B8IA 3C9FA 1OIEA 3QFMA 4XPNA 3IB8A 3KBPA 5JPEA 5J28A 1U32A 1S70A 4B2OA 3DSCA 1JK7A 1WARA 4V0WA 2O8AA 4NZVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AV0 A;  4H2B A;  4F0Z A;  1II7 A;  4H2G A;  3H63 A;  4OR9 A;  4KKZ A;  4FBQ A;  3H67 A;  4DHL A;  1SU1 A;  4MP0 A;  1HP1 A;  1IT6 A;  3C5W C;  3QG5 C;  3THN A;  3H66 A;  1S3L A;  2BDX A;  1FJM A;  3ZU0 A;  2WDC A;  2P6B A;  4LAC C;  3QFN A;  2Z1A A;  1W24 A;  3RQZ A;  3RL3 A;  4O4K A;  1T70 A;  2ZBM A;  4DT2 A;  3P71 C;  4WWL A;  4ORC A;  3PSN A;  4DSY A;  3IB7 A;  1XZW A;  4O43 A;  4H1Y P;  3JYF A;  1S95 A;  1USH A;  4H1S A;  2IAE C;  2QFR A;  2DFJ A;  4MOY A;  3K7W C;  3EGG A;  3H68 A;  3ZTV A;  3QFK A;  4H2F A;  5IOH A;  1HPU A;  4I5L C;  3PSO A;  2HYO A;  3T1I A;  3TGH A;  1WAO 1;  1M63 A;  2IE3 C;  4TUI A;  4MOV A;  2Q8U A;  4V0V A;  4I5N C;  5HPE A;  2BQ8 X;  4UWQ A;  3DSD A;  2JOG A;  4G9J A;  2R17 A;  2USH A;  1Z2W A;  1KBP A;  3E7B A;  4ZVZ A;  2GJU A;  1S3M A;  5JJT A;  1AUI A;  3ICF A;  4IYP C;  4V0X A;  4H2I A;  1NNW A;  1S8E A;  2HYP A;  2IE4 C;  1Z2X A;  2A22 A;  3FGA C;  3THO B;  4TUG A;  3IVD A;  1OID A;  3HVQ A;  3K7V C;  1QFC A;  3DW8 C;  1UF3 A;  3H60 A;  4J6O A;  3QFO A;  4FBW A;  4O5G A;  2NYL C;  3H64 A;  3GVE A;  2WDF A;  4JA9 A;  5F3W A;  4HD0 A;  2XMO A;  1T71 A;  4UT3 A;  4FBK A;  4LTY A;  2AHD A;  2NYM C;  3V4Y A;  2WDE A;  4UT2 A;  3H62 B;  4ZX2 A;  1S3N A;  4KBP A;  1TCO A;  3AUZ A;  4FCX A;  3CK2 A;  4IL1 A;  2Z72 A;  4ORB A;  4M0V A;  4UT3 B;  3RL4 A;  2NXF A;  4JA7 A;  2KKN A;  3EGH A;  5EQV A;  5INB A;  3E7A A;  3H69 A;  2BCD A;  1G5B A;  2CV9 A;  5JPF A;  1XM7 A;  4LU9 A;  5C1V A;  2QJC A;  2O8G A;  2YVT A;  1HO5 A;  4YKE A;  2HY1 A;  4O24 A;  4Q7F A;  2Z06 A;  5DNY A;  2QFP A;  3RL5 A;  5GTU A;  1UTE A;  1MF8 A;  3LL8 A;  3N5U A;  4ORA A;  3H61 A;  2NPP C;  1QHW A;  2WDD A;  1V73 A;  1OI8 A;  3IVE A;  5B8I A;  3C9F A;  1OIE A;  3QFM A;  4XPN A;  3IB8 A;  3KBP A;  5JPE A;  5J28 A;  1U32 A;  1S70 A;  4B2O A;  3DSC A;  1JK7 A;  1WAR A;  4V0W A;  2O8A A;  4NZV A; 
#chains in the Genus database with same CATH topology
 3AV0 A;  4H2B A;  4F0Z A;  1II7 A;  4H2G A;  3H63 A;  4OR9 A;  4KKZ A;  4FBQ A;  3H67 A;  4DHL A;  1SU1 A;  4MP0 A;  1HP1 A;  1IT6 A;  3C5W C;  3QG5 C;  3THN A;  3H66 A;  1S3L A;  2BDX A;  1FJM A;  3ZU0 A;  2WDC A;  2P6B A;  4LAC C;  3QFN A;  2Z1A A;  1W24 A;  3RQZ A;  3RL3 A;  4O4K A;  1T70 A;  2ZBM A;  4DT2 A;  3P71 C;  4WWL A;  4ORC A;  3PSN A;  3FLO A;  4DSY A;  3IB7 A;  1XZW A;  4O43 A;  4H1Y P;  3JYF A;  1S95 A;  1USH A;  4H1S A;  2IAE C;  3E0J A;  2QFR A;  2DFJ A;  4MOY A;  3K7W C;  3EGG A;  3H68 A;  3ZTV A;  3QFK A;  4H2F A;  5IOH A;  1HPU A;  4I5L C;  3PSO A;  2HYO A;  3T1I A;  3TGH A;  1WAO 1;  2DXN A;  1M63 A;  2IE3 C;  4TUI A;  4MOV A;  2Q8U A;  4V0V A;  4I5N C;  5HPE A;  2BQ8 X;  4UWQ A;  3DSD A;  2JOG A;  4G9J A;  2R17 A;  2USH A;  1Z2W A;  1KBP A;  3E7B A;  4ZVZ A;  2GJU A;  1S3M A;  5JJT A;  1AUI A;  3ICF A;  4IYP C;  4V0X A;  4H2I A;  1NNW A;  1S8E A;  2HYP A;  2IE4 C;  1Z2X A;  2A22 A;  3FGA C;  3THO B;  4TUG A;  3IVD A;  1OID A;  3HVQ A;  3K7V C;  2ZOA A;  1QFC A;  3DW8 C;  1UF3 A;  3H60 A;  4J6O A;  3QFO A;  4FBW A;  4O5G A;  2NYL C;  3H64 A;  3GVE A;  2WDF A;  4JA9 A;  5F3W A;  4HD0 A;  2XMO A;  1T71 A;  4UT3 A;  4FBK A;  4LTY A;  2AHD A;  2NYM C;  3V4Y A;  2ZO9 B;  2WDE A;  4UT2 A;  3H62 B;  4ZX2 A;  1S3N A;  4KBP A;  1TCO A;  3AUZ A;  4FCX A;  3CK2 A;  4IL1 A;  2Z72 A;  4ORB A;  4M0V A;  4UT3 B;  3RL4 A;  2DXL A;  2NXF A;  4JA7 A;  2KKN A;  3EGH A;  5EQV A;  5INB A;  3E7A A;  3H69 A;  2BCD A;  1G5B A;  2CV9 A;  5JPF A;  1XM7 A;  3D03 A;  4LU9 A;  5C1V A;  2QJC A;  2O8G A;  2YVT A;  1HO5 A;  4YKE A;  2HY1 A;  4O24 A;  4Q7F A;  2Z06 A;  5DNY A;  2QFP A;  3RL5 A;  5GTU A;  1UTE A;  1MF8 A;  3LL8 A;  2YEQ A;  3N5U A;  3H61 A;  4ORA A;  2NPP C;  1QHW A;  2WDD A;  1V73 A;  1OI8 A;  3IVE A;  5B8I A;  3C9F A;  1OIE A;  3QFM A;  4XPN A;  3IB8 A;  3KBP A;  5JPE A;  5J28 A;  1U32 A;  1S70 A;  4B2O A;  3DSC A;  1JK7 A;  1WAR A;  4V0W A;  2O8A A;  4NZV A; 
#chains in the Genus database with same CATH homology
 3AV0 A;  4H2B A;  4F0Z A;  1II7 A;  4H2G A;  3H63 A;  4OR9 A;  4KKZ A;  4FBQ A;  3H67 A;  4DHL A;  1SU1 A;  4MP0 A;  1HP1 A;  1IT6 A;  3C5W C;  3QG5 C;  3THN A;  3H66 A;  1S3L A;  2BDX A;  1FJM A;  3ZU0 A;  2WDC A;  2P6B A;  4LAC C;  3QFN A;  2Z1A A;  1W24 A;  3RQZ A;  3RL3 A;  4O4K A;  1T70 A;  2ZBM A;  4DT2 A;  3P71 C;  4WWL A;  4ORC A;  3PSN A;  3FLO A;  4DSY A;  3IB7 A;  1XZW A;  4O43 A;  4H1Y P;  3JYF A;  1S95 A;  1USH A;  4H1S A;  2IAE C;  3E0J A;  2QFR A;  2DFJ A;  4MOY A;  3K7W C;  3EGG A;  3H68 A;  3ZTV A;  3QFK A;  4H2F A;  5IOH A;  1HPU A;  4I5L C;  3PSO A;  2HYO A;  3T1I A;  3TGH A;  1WAO 1;  2DXN A;  1M63 A;  2IE3 C;  4TUI A;  4MOV A;  2Q8U A;  4V0V A;  4I5N C;  5HPE A;  2BQ8 X;  4UWQ A;  3DSD A;  2JOG A;  4G9J A;  2R17 A;  2USH A;  1Z2W A;  1KBP A;  3E7B A;  4ZVZ A;  2GJU A;  1S3M A;  5JJT A;  1AUI A;  3ICF A;  4IYP C;  4V0X A;  4H2I A;  1NNW A;  1S8E A;  2HYP A;  2IE4 C;  1Z2X A;  2A22 A;  3FGA C;  3THO B;  4TUG A;  3IVD A;  1OID A;  3HVQ A;  3K7V C;  2ZOA A;  1QFC A;  3DW8 C;  1UF3 A;  3H60 A;  4J6O A;  3QFO A;  4FBW A;  4O5G A;  2NYL C;  3H64 A;  3GVE A;  2WDF A;  4JA9 A;  5F3W A;  4HD0 A;  2XMO A;  1T71 A;  4UT3 A;  4FBK A;  4LTY A;  2AHD A;  2NYM C;  3V4Y A;  2ZO9 B;  2WDE A;  4UT2 A;  3H62 B;  4ZX2 A;  1S3N A;  4KBP A;  1TCO A;  3AUZ A;  4FCX A;  3CK2 A;  4IL1 A;  2Z72 A;  4ORB A;  4M0V A;  4UT3 B;  3RL4 A;  2DXL A;  2NXF A;  4JA7 A;  2KKN A;  3EGH A;  5EQV A;  5INB A;  3E7A A;  3H69 A;  2BCD A;  1G5B A;  2CV9 A;  5JPF A;  1XM7 A;  3D03 A;  4LU9 A;  5C1V A;  2QJC A;  2O8G A;  2YVT A;  1HO5 A;  4YKE A;  2HY1 A;  4O24 A;  4Q7F A;  2Z06 A;  5DNY A;  2QFP A;  3RL5 A;  5GTU A;  1UTE A;  1MF8 A;  3LL8 A;  2YEQ A;  3N5U A;  3H61 A;  4ORA A;  2NPP C;  1QHW A;  2WDD A;  1V73 A;  1OI8 A;  3IVE A;  5B8I A;  3C9F A;  1OIE A;  3QFM A;  4XPN A;  3IB8 A;  3KBP A;  5JPE A;  5J28 A;  1U32 A;  1S70 A;  4B2O A;  3DSC A;  1JK7 A;  1WAR A;  4V0W A;  2O8A A;  4NZV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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