4UWQA

Crystal structure of the disulfide-linked complex of the thiosulfodyrolase soxb with the carrier-protein soxyz from thermus thermophilus
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
548
structure length
548
Chain Sequence
EDPRSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHCEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Thermus thermophilus hb27
publication title Structural Basis for Specificity and Promiscuity in a Carrier Protein/Enzyme System from the Sulfur Cycle
pubmed doi rcsb
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 163
structure length 548
sequence length 548
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2014-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 4uwqA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 4uwqA03
3IB8A 1HO5A 3QFKA 3THOB 3H62B 1UTEA 3H69A 4ZX2A 2WDFA 2DFJA 1G5BA 1S95A 2IAEC 2ZBMA 4MOYA 4FBWA 2IE3C 2Z1AA 1AUIA 4UT3B 3RL3A 4XPNA 1U32A 1IT6A 3ZU0A 4TUGA 2IE4C 3DW8C 1QFCA 3C5WC 4F0ZA 1OI8A 1MF8A 1NNWA 4M0VA 1USHA 3H63A 3ZTVA 3H68A 1M63A 4NZVA 3PSOA 1OIDA 3H66A 3H67A 4ORAA 3T1IA 4HD0A 3DSCA 4JA9A 3K7VC 3IVDA 3KBPA 5EQVA 4FCXA 2HY1A 1QHWA 3RL4A 4V0VA 2BCDA 2NYMC 3H64A 4H1SA 4TUIA 5JPFA 3QFOA 5HPEA 4V0XA 3N5UA 3FGAC 4OR9A 3IVEA 4I5NC 4DHLA 1XZWA 4IYPC 4YKEA 4IL1A 3QG5C 3AV0A 3GVEA 3CK2A 4WWLA 2O8GA 2QFPA 5JJTA 2NYLC 4KKZA 4UT3A 1Z2WA 2WDEA 4V0WA 1WAO1 1W24A 4KBPA 4O43A 4I5LC 2R17A 3IB7A 4H1YP 1SU1A 5C1VA 1Z2XA 2BQ8X 5J28A 4MOVA 4ZVZA 1FJMA 2Z06A 4H2IA 4ORCA 2YVTA 2P6BA 3TGHA 2JOGA 2XMOA 5GTUA 2USHA 3P71C 3E7AA 1II7A 3EGGA 2WDCA 4FBQA 4H2FA 4LU9A 1XM7A 2O8AA 3JYFA 4FBKA 4LTYA 4UT2A 1S8EA 3LL8A 5JPEA 2AHDA 3RQZA 5B8IA 2HYOA 2QJCA 1S3MA 3QFMA 1S3LA 2GJUA 4H2BA 1UF3A 5IOHA 3H61A 4G9JA 2NPPC 2QFRA 1T70A 3EGHA 4O5GA 1HPUA 1S3NA 4H2GA 5DNYA 4Q7FA 4UWQA 3K7WC 1V73A 3ICFA 1T71A 1S70A 2HYPA 3QFNA 4LACC 2A22A 5F3WA 2BDXA 5INBA 3RL5A 1OIEA 2Z72A 4DT2A 2KKNA 3V4YA 3C9FA 4MP0A 3HVQA 4JA7A 4B2OA 2WDDA 4J6OA 3PSNA 4O24A 3AUZA 1HP1A 1KBPA 1JK7A 2CV9A 2Q8UA 3DSDA 4O4KA 3E7BA 3H60A 4ORBA 1TCOA 4DSYA 2NXFA 3THNA 1WARA
chains in the Genus database with same CATH superfamily
3IB8A 1HO5A 3QFKA 3THOB 3H62B 1UTEA 3H69A 4ZX2A 2WDFA 2DFJA 3E0JA 1G5BA 1S95A 2IAEC 2ZBMA 4MOYA 4FBWA 2IE3C 2Z1AA 1AUIA 4UT3B 3RL3A 4XPNA 1U32A 1IT6A 3ZU0A 4TUGA 2IE4C 2ZOAA 1QFCA 3C5WC 3DW8C 4F0ZA 1OI8A 1MF8A 1NNWA 4M0VA 1USHA 3D03A 3H63A 3ZTVA 2YEQA 3H68A 1M63A 4NZVA 3PSOA 1OIDA 3H66A 3H67A 4ORAA 3T1IA 4HD0A 3DSCA 4JA9A 3K7VC 3IVDA 3KBPA 5EQVA 4FCXA 2HY1A 1QHWA 3FLOA 3RL4A 4V0VA 2BCDA 2NYMC 3H64A 4H1SA 4TUIA 5JPFA 3QFOA 5HPEA 4V0XA 3N5UA 3FGAC 4OR9A 3IVEA 4I5NC 4DHLA 1XZWA 4IYPC 4YKEA 4IL1A 3QG5C 3AV0A 3GVEA 3CK2A 4WWLA 2O8GA 2QFPA 5JJTA 2NYLC 4KKZA 4UT3A 1Z2WA 2WDEA 4V0WA 1WAO1 1W24A 4KBPA 4O43A 4I5LC 2R17A 3IB7A 4H1YP 1SU1A 5C1VA 1Z2XA 2BQ8X 5J28A 4MOVA 4ZVZA 1FJMA 2Z06A 4H2IA 4ORCA 2YVTA 2P6BA 3TGHA 2JOGA 2XMOA 5GTUA 2DXNA 2USHA 3P71C 3E7AA 1II7A 3EGGA 2WDCA 4FBQA 4H2FA 4LU9A 1XM7A 2O8AA 3JYFA 4FBKA 4LTYA 4UT2A 1S8EA 3LL8A 5JPEA 2AHDA 3RQZA 5B8IA 2HYOA 2QJCA 1S3MA 3QFMA 1S3LA 2GJUA 4H2BA 1UF3A 5IOHA 3H61A 4G9JA 2NPPC 2QFRA 1T70A 3EGHA 4O5GA 2ZO9B 1HPUA 1S3NA 4H2GA 5DNYA 4Q7FA 4UWQA 3K7WC 1V73A 3ICFA 1T71A 1S70A 2HYPA 3QFNA 4LACC 2A22A 5F3WA 2BDXA 5INBA 3RL5A 1OIEA 2Z72A 4DT2A 2KKNA 3V4YA 3C9FA 4MP0A 3HVQA 4JA7A 4B2OA 2WDDA 4J6OA 3PSNA 4O24A 3AUZA 1HP1A 1KBPA 1JK7A 2CV9A 2Q8UA 3DSDA 4O4KA 2DXLA 3E7BA 3H60A 4ORBA 1TCOA 4DSYA 2NXFA 3THNA 1WARA
chains in the Genus database with same CATH topology
3IB8A 1HO5A 3QFKA 3THOB 3H62B 1UTEA 3H69A 4ZX2A 2WDFA 2DFJA 3E0JA 1G5BA 1S95A 2IAEC 2ZBMA 4MOYA 4FBWA 2IE3C 2Z1AA 1AUIA 4UT3B 3RL3A 4XPNA 1U32A 1IT6A 3ZU0A 4TUGA 2IE4C 2ZOAA 1QFCA 3C5WC 3DW8C 4F0ZA 1OI8A 1MF8A 1NNWA 4M0VA 1USHA 3D03A 3H63A 3ZTVA 2YEQA 3H68A 1M63A 4NZVA 3PSOA 1OIDA 3H66A 3H67A 4ORAA 3T1IA 4HD0A 3DSCA 4JA9A 3K7VC 3IVDA 3KBPA 5EQVA 4FCXA 2HY1A 1QHWA 3FLOA 3RL4A 4V0VA 2BCDA 2NYMC 3H64A 4H1SA 4TUIA 5JPFA 3QFOA 5HPEA 4V0XA 3N5UA 3FGAC 4OR9A 3IVEA 4I5NC 4DHLA 1XZWA 4IYPC 4YKEA 4IL1A 3QG5C 3AV0A 3GVEA 3CK2A 4WWLA 2O8GA 2QFPA 5JJTA 2NYLC 4KKZA 4UT3A 1Z2WA 2WDEA 4V0WA 1WAO1 1W24A 4KBPA 4O43A 4I5LC 2R17A 3IB7A 4H1YP 1SU1A 5C1VA 1Z2XA 2BQ8X 5J28A 4MOVA 4ZVZA 1FJMA 2Z06A 4H2IA 4ORCA 2YVTA 2P6BA 3TGHA 2JOGA 2XMOA 5GTUA 2DXNA 2USHA 3P71C 3E7AA 1II7A 3EGGA 2WDCA 4FBQA 4H2FA 4LU9A 1XM7A 2O8AA 3JYFA 4FBKA 4LTYA 4UT2A 1S8EA 3LL8A 5JPEA 2AHDA 3RQZA 5B8IA 2HYOA 2QJCA 1S3MA 3QFMA 1S3LA 2GJUA 4H2BA 1UF3A 5IOHA 3H61A 4G9JA 2NPPC 2QFRA 1T70A 3EGHA 4O5GA 2ZO9B 1HPUA 1S3NA 4H2GA 5DNYA 4Q7FA 4UWQA 3K7WC 1V73A 3ICFA 1T71A 1S70A 2HYPA 3QFNA 4LACC 2A22A 5F3WA 2BDXA 5INBA 3RL5A 1OIEA 2Z72A 4DT2A 2KKNA 3V4YA 3C9FA 4MP0A 3HVQA 4JA7A 4B2OA 2WDDA 4J6OA 3PSNA 4O24A 3AUZA 1HP1A 1KBPA 1JK7A 2CV9A 2Q8UA 3DSDA 4O4KA 2DXLA 3E7BA 3H60A 4ORBA 1TCOA 4DSYA 2NXFA 3THNA 1WARA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IB8 A;  1HO5 A;  3QFK A;  3THO B;  3H62 B;  1UTE A;  3H69 A;  4ZX2 A;  2WDF A;  2DFJ A;  1G5B A;  1S95 A;  2IAE C;  2ZBM A;  4MOY A;  4FBW A;  2IE3 C;  2Z1A A;  1AUI A;  4UT3 B;  3RL3 A;  4XPN A;  1U32 A;  1IT6 A;  3ZU0 A;  4TUG A;  2IE4 C;  3DW8 C;  1QFC A;  3C5W C;  4F0Z A;  1OI8 A;  1MF8 A;  1NNW A;  4M0V A;  1USH A;  3H63 A;  3ZTV A;  3H68 A;  1M63 A;  4NZV A;  3PSO A;  1OID A;  3H66 A;  3H67 A;  4ORA A;  3T1I A;  4HD0 A;  3DSC A;  4JA9 A;  3K7V C;  3IVD A;  3KBP A;  5EQV A;  4FCX A;  2HY1 A;  1QHW A;  3RL4 A;  4V0V A;  2BCD A;  2NYM C;  3H64 A;  4H1S A;  4TUI A;  5JPF A;  3QFO A;  5HPE A;  4V0X A;  3N5U A;  3FGA C;  4OR9 A;  3IVE A;  4I5N C;  4DHL A;  1XZW A;  4IYP C;  4YKE A;  4IL1 A;  3QG5 C;  3AV0 A;  3GVE A;  3CK2 A;  4WWL A;  2O8G A;  2QFP A;  5JJT A;  2NYL C;  4KKZ A;  4UT3 A;  1Z2W A;  2WDE A;  4V0W A;  1WAO 1;  1W24 A;  4KBP A;  4O43 A;  4I5L C;  2R17 A;  3IB7 A;  4H1Y P;  1SU1 A;  5C1V A;  1Z2X A;  2BQ8 X;  5J28 A;  4MOV A;  4ZVZ A;  1FJM A;  2Z06 A;  4H2I A;  4ORC A;  2YVT A;  2P6B A;  3TGH A;  2JOG A;  2XMO A;  5GTU A;  2USH A;  3P71 C;  3E7A A;  1II7 A;  3EGG A;  2WDC A;  4FBQ A;  4H2F A;  4LU9 A;  1XM7 A;  2O8A A;  3JYF A;  4FBK A;  4LTY A;  4UT2 A;  1S8E A;  3LL8 A;  5JPE A;  2AHD A;  3RQZ A;  5B8I A;  2HYO A;  2QJC A;  1S3M A;  3QFM A;  1S3L A;  2GJU A;  4H2B A;  1UF3 A;  5IOH A;  3H61 A;  4G9J A;  2NPP C;  2QFR A;  1T70 A;  3EGH A;  4O5G A;  1HPU A;  1S3N A;  4H2G A;  5DNY A;  4Q7F A;  4UWQ A;  3K7W C;  1V73 A;  3ICF A;  1T71 A;  1S70 A;  2HYP A;  3QFN A;  4LAC C;  2A22 A;  5F3W A;  2BDX A;  5INB A;  3RL5 A;  1OIE A;  2Z72 A;  4DT2 A;  2KKN A;  3V4Y A;  3C9F A;  4MP0 A;  3HVQ A;  4JA7 A;  4B2O A;  2WDD A;  4J6O A;  3PSN A;  4O24 A;  3AUZ A;  1HP1 A;  1KBP A;  1JK7 A;  2CV9 A;  2Q8U A;  3DSD A;  4O4K A;  3E7B A;  3H60 A;  4ORB A;  1TCO A;  4DSY A;  2NXF A;  3THN A;  1WAR A; 
#chains in the Genus database with same CATH topology
 3IB8 A;  1HO5 A;  3QFK A;  3THO B;  3H62 B;  1UTE A;  3H69 A;  4ZX2 A;  2WDF A;  2DFJ A;  3E0J A;  1G5B A;  1S95 A;  2IAE C;  2ZBM A;  4MOY A;  4FBW A;  2IE3 C;  2Z1A A;  1AUI A;  4UT3 B;  3RL3 A;  4XPN A;  1U32 A;  1IT6 A;  3ZU0 A;  4TUG A;  2IE4 C;  2ZOA A;  1QFC A;  3C5W C;  3DW8 C;  4F0Z A;  1OI8 A;  1MF8 A;  1NNW A;  4M0V A;  1USH A;  3D03 A;  3H63 A;  3ZTV A;  2YEQ A;  3H68 A;  1M63 A;  4NZV A;  3PSO A;  1OID A;  3H66 A;  3H67 A;  4ORA A;  3T1I A;  4HD0 A;  3DSC A;  4JA9 A;  3K7V C;  3IVD A;  3KBP A;  5EQV A;  4FCX A;  2HY1 A;  1QHW A;  3FLO A;  3RL4 A;  4V0V A;  2BCD A;  2NYM C;  3H64 A;  4H1S A;  4TUI A;  5JPF A;  3QFO A;  5HPE A;  4V0X A;  3N5U A;  3FGA C;  4OR9 A;  3IVE A;  4I5N C;  4DHL A;  1XZW A;  4IYP C;  4YKE A;  4IL1 A;  3QG5 C;  3AV0 A;  3GVE A;  3CK2 A;  4WWL A;  2O8G A;  2QFP A;  5JJT A;  2NYL C;  4KKZ A;  4UT3 A;  1Z2W A;  2WDE A;  4V0W A;  1WAO 1;  1W24 A;  4KBP A;  4O43 A;  4I5L C;  2R17 A;  3IB7 A;  4H1Y P;  1SU1 A;  5C1V A;  1Z2X A;  2BQ8 X;  5J28 A;  4MOV A;  4ZVZ A;  1FJM A;  2Z06 A;  4H2I A;  4ORC A;  2YVT A;  2P6B A;  3TGH A;  2JOG A;  2XMO A;  5GTU A;  2DXN A;  2USH A;  3P71 C;  3E7A A;  1II7 A;  3EGG A;  2WDC A;  4FBQ A;  4H2F A;  4LU9 A;  1XM7 A;  2O8A A;  3JYF A;  4FBK A;  4LTY A;  4UT2 A;  1S8E A;  3LL8 A;  5JPE A;  2AHD A;  3RQZ A;  5B8I A;  2HYO A;  2QJC A;  1S3M A;  3QFM A;  1S3L A;  2GJU A;  4H2B A;  1UF3 A;  5IOH A;  3H61 A;  4G9J A;  2NPP C;  2QFR A;  1T70 A;  3EGH A;  4O5G A;  2ZO9 B;  1HPU A;  1S3N A;  4H2G A;  5DNY A;  4Q7F A;  4UWQ A;  3K7W C;  1V73 A;  3ICF A;  1T71 A;  1S70 A;  2HYP A;  3QFN A;  4LAC C;  2A22 A;  5F3W A;  2BDX A;  5INB A;  3RL5 A;  1OIE A;  2Z72 A;  4DT2 A;  2KKN A;  3V4Y A;  3C9F A;  4MP0 A;  3HVQ A;  4JA7 A;  4B2O A;  2WDD A;  4J6O A;  3PSN A;  4O24 A;  3AUZ A;  1HP1 A;  1KBP A;  1JK7 A;  2CV9 A;  2Q8U A;  3DSD A;  4O4K A;  2DXL A;  3E7B A;  3H60 A;  4ORB A;  1TCO A;  4DSY A;  2NXF A;  3THN A;  1WAR A; 
#chains in the Genus database with same CATH homology
 3IB8 A;  1HO5 A;  3QFK A;  3THO B;  3H62 B;  1UTE A;  3H69 A;  4ZX2 A;  2WDF A;  2DFJ A;  3E0J A;  1G5B A;  1S95 A;  2IAE C;  2ZBM A;  4MOY A;  4FBW A;  2IE3 C;  2Z1A A;  1AUI A;  4UT3 B;  3RL3 A;  4XPN A;  1U32 A;  1IT6 A;  3ZU0 A;  4TUG A;  2IE4 C;  2ZOA A;  1QFC A;  3C5W C;  3DW8 C;  4F0Z A;  1OI8 A;  1MF8 A;  1NNW A;  4M0V A;  1USH A;  3D03 A;  3H63 A;  3ZTV A;  2YEQ A;  3H68 A;  1M63 A;  4NZV A;  3PSO A;  1OID A;  3H66 A;  3H67 A;  4ORA A;  3T1I A;  4HD0 A;  3DSC A;  4JA9 A;  3K7V C;  3IVD A;  3KBP A;  5EQV A;  4FCX A;  2HY1 A;  1QHW A;  3FLO A;  3RL4 A;  4V0V A;  2BCD A;  2NYM C;  3H64 A;  4H1S A;  4TUI A;  5JPF A;  3QFO A;  5HPE A;  4V0X A;  3N5U A;  3FGA C;  4OR9 A;  3IVE A;  4I5N C;  4DHL A;  1XZW A;  4IYP C;  4YKE A;  4IL1 A;  3QG5 C;  3AV0 A;  3GVE A;  3CK2 A;  4WWL A;  2O8G A;  2QFP A;  5JJT A;  2NYL C;  4KKZ A;  4UT3 A;  1Z2W A;  2WDE A;  4V0W A;  1WAO 1;  1W24 A;  4KBP A;  4O43 A;  4I5L C;  2R17 A;  3IB7 A;  4H1Y P;  1SU1 A;  5C1V A;  1Z2X A;  2BQ8 X;  5J28 A;  4MOV A;  4ZVZ A;  1FJM A;  2Z06 A;  4H2I A;  4ORC A;  2YVT A;  2P6B A;  3TGH A;  2JOG A;  2XMO A;  5GTU A;  2DXN A;  2USH A;  3P71 C;  3E7A A;  1II7 A;  3EGG A;  2WDC A;  4FBQ A;  4H2F A;  4LU9 A;  1XM7 A;  2O8A A;  3JYF A;  4FBK A;  4LTY A;  4UT2 A;  1S8E A;  3LL8 A;  5JPE A;  2AHD A;  3RQZ A;  5B8I A;  2HYO A;  2QJC A;  1S3M A;  3QFM A;  1S3L A;  2GJU A;  4H2B A;  1UF3 A;  5IOH A;  3H61 A;  4G9J A;  2NPP C;  2QFR A;  1T70 A;  3EGH A;  4O5G A;  2ZO9 B;  1HPU A;  1S3N A;  4H2G A;  5DNY A;  4Q7F A;  4UWQ A;  3K7W C;  1V73 A;  3ICF A;  1T71 A;  1S70 A;  2HYP A;  3QFN A;  4LAC C;  2A22 A;  5F3W A;  2BDX A;  5INB A;  3RL5 A;  1OIE A;  2Z72 A;  4DT2 A;  2KKN A;  3V4Y A;  3C9F A;  4MP0 A;  3HVQ A;  4JA7 A;  4B2O A;  2WDD A;  4J6O A;  3PSN A;  4O24 A;  3AUZ A;  1HP1 A;  1KBP A;  1JK7 A;  2CV9 A;  2Q8U A;  3DSD A;  4O4K A;  2DXL A;  3E7B A;  3H60 A;  4ORB A;  1TCO A;  4DSY A;  2NXF A;  3THN A;  1WAR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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