2WDFA

Termus thermophilus sulfate thiohydrolase soxb
Total Genus 191
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
544
structure length
544
Chain Sequence
SLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 191
structure length 544
sequence length 544
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdfA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdfA03
1OI8A 5HPEA 2P6BA 1OIDA 4LACC 4DT2A 2QFPA 4I5LC 2HY1A 5B8IA 2NPPC 1S3MA 4H2GA 1II7A 3H66A 3DSCA 1S8EA 4ORBA 1S95A 3ZU0A 1MF8A 1QFCA 2WDFA 4UT3A 3RQZA 3H63A 3DW8C 1AUIA 3EGHA 4M0VA 4OR9A 2NXFA 3IB8A 4H2BA 4MOVA 2HYOA 2WDDA 5C1VA 4DHLA 2O8GA 3AV0A 3GVEA 4O43A 4XPNA 2Z1AA 1FJMA 1U32A 4LTYA 1Z2WA 4KBPA 5JPEA 3H62B 3C9FA 1M63A 5DNYA 1SU1A 3PSNA 4H1SA 1IT6A 2WDCA 1W24A 4LU9A 4G9JA 3RL4A 1HPUA 3TGHA 3H68A 3ZTVA 3AUZA 4MP0A 3IVEA 4O5GA 1XM7A 4FBWA 3RL3A 2O8AA 1T70A 3H69A 4H1YP 4I5NC 1NNWA 3EGGA 3C5WC 3QFKA 4NZVA 3FGAC 4UT3B 4ZX2A 1S70A 1V73A 4DSYA 1UTEA 4HD0A 3JYFA 2QFRA 2JOGA 4UT2A 4B2OA 4JA9A 2IAEC 2ZBMA 4JA7A 4H2FA 3H64A 2WDEA 1WAO1 2GJUA 5EQVA 3IB7A 3H61A 4O4KA 4IYPC 3THNA 4IL1A 4KKZA 3THOB 5INBA 1UF3A 2NYLC 2AHDA 3RL5A 1JK7A 4Q7FA 4V0VA 3QG5C 4J6OA 3ICFA 5JJTA 3IVDA 5IOHA 4MOYA 3QFNA 2Z06A 5GTUA 2Z72A 3P71C 2Q8UA 3K7WC 3N5UA 4FBQA 2DFJA 4UWQA 1G5BA 1KBPA 3HVQA 1S3NA 1HO5A 3H67A 4TUGA 3QFOA 3PSOA 2YVTA 5JPFA 5F3WA 4FBKA 3E7BA 1HP1A 1Z2XA 2BDXA 3CK2A 3E7AA 4H2IA 4V0WA 1T71A 4YKEA 1TCOA 2A22A 4ORCA 2USHA 3DSDA 3V4YA 5J28A 4FCXA 1XZWA 2HYPA 4O24A 4ZVZA 4V0XA 2KKNA 1OIEA 1S3LA 4ORAA 4F0ZA 4TUIA 2IE4C 1QHWA 2CV9A 3H60A 3T1IA 3KBPA 1USHA 2BCDA 3K7VC 2IE3C 2XMOA 3LL8A 3QFMA 2NYMC 4WWLA 2R17A 1WARA 2BQ8X 2QJCA
chains in the Genus database with same CATH superfamily
1OI8A 5HPEA 2P6BA 1OIDA 4LACC 4DT2A 2QFPA 4I5LC 2HY1A 5B8IA 2NPPC 1S3MA 4H2GA 1II7A 3H66A 3DSCA 1S8EA 3FLOA 1S95A 4ORBA 3ZU0A 1MF8A 1QFCA 2WDFA 4UT3A 3RQZA 2ZO9B 3H63A 3DW8C 1AUIA 3EGHA 4M0VA 4OR9A 2NXFA 3IB8A 4H2BA 4MOVA 2DXLA 2HYOA 2WDDA 5C1VA 4DHLA 2O8GA 3AV0A 3GVEA 4O43A 4XPNA 2Z1AA 1FJMA 1U32A 4LTYA 1Z2WA 4KBPA 5JPEA 3H62B 3C9FA 1M63A 5DNYA 1SU1A 3PSNA 4H1SA 1IT6A 2WDCA 1W24A 4LU9A 4G9JA 3RL4A 1HPUA 3TGHA 3H68A 3ZTVA 3D03A 3AUZA 4MP0A 3IVEA 4O5GA 1XM7A 4FBWA 3RL3A 2O8AA 1T70A 3H69A 4H1YP 4I5NC 1NNWA 3EGGA 3C5WC 3QFKA 4NZVA 3FGAC 4UT3B 4ZX2A 1S70A 1V73A 4DSYA 1UTEA 4HD0A 3JYFA 2QFRA 2JOGA 4UT2A 4B2OA 4JA9A 2IAEC 2ZBMA 4JA7A 4H2FA 3H64A 2WDEA 1WAO1 2GJUA 5EQVA 3IB7A 3H61A 4O4KA 4IYPC 3THNA 4IL1A 4KKZA 3THOB 5INBA 1UF3A 2NYLC 2AHDA 3RL5A 1JK7A 4Q7FA 4V0VA 3QG5C 4J6OA 3E0JA 3ICFA 5JJTA 3IVDA 5IOHA 4MOYA 3QFNA 2Z06A 5GTUA 2Z72A 2YEQA 3P71C 2Q8UA 3K7WC 3N5UA 4FBQA 2DFJA 4UWQA 1G5BA 1KBPA 3HVQA 1S3NA 1HO5A 3H67A 4TUGA 3QFOA 3PSOA 2YVTA 5JPFA 5F3WA 2ZOAA 4FBKA 3E7BA 1HP1A 1Z2XA 2BDXA 3CK2A 3E7AA 4H2IA 4V0WA 1T71A 4YKEA 1TCOA 2A22A 4ORCA 2USHA 3DSDA 3V4YA 5J28A 4FCXA 1XZWA 2HYPA 4O24A 4ZVZA 4V0XA 2KKNA 1OIEA 1S3LA 4ORAA 4F0ZA 4TUIA 2IE4C 1QHWA 2CV9A 3H60A 3T1IA 3KBPA 1USHA 2BCDA 3K7VC 2IE3C 2XMOA 3LL8A 3QFMA 2NYMC 4WWLA 2R17A 2DXNA 1WARA 2BQ8X 2QJCA
chains in the Genus database with same CATH topology
1OI8A 5HPEA 2P6BA 1OIDA 4LACC 4DT2A 2QFPA 4I5LC 2HY1A 5B8IA 2NPPC 1S3MA 4H2GA 1II7A 3H66A 3DSCA 1S8EA 3FLOA 1S95A 4ORBA 3ZU0A 1MF8A 1QFCA 2WDFA 4UT3A 3RQZA 2ZO9B 3H63A 3DW8C 1AUIA 3EGHA 4M0VA 4OR9A 2NXFA 3IB8A 4H2BA 4MOVA 2DXLA 2HYOA 2WDDA 5C1VA 4DHLA 2O8GA 3AV0A 3GVEA 4O43A 4XPNA 2Z1AA 1FJMA 1U32A 4LTYA 1Z2WA 4KBPA 5JPEA 3H62B 3C9FA 1M63A 5DNYA 1SU1A 3PSNA 4H1SA 1IT6A 2WDCA 1W24A 4LU9A 4G9JA 3RL4A 1HPUA 3TGHA 3H68A 3ZTVA 3D03A 3AUZA 4MP0A 3IVEA 4O5GA 1XM7A 4FBWA 3RL3A 2O8AA 1T70A 3H69A 4H1YP 4I5NC 1NNWA 3EGGA 3C5WC 3QFKA 4NZVA 3FGAC 4UT3B 4ZX2A 1S70A 1V73A 4DSYA 1UTEA 4HD0A 3JYFA 2QFRA 2JOGA 4UT2A 4B2OA 4JA9A 2IAEC 2ZBMA 4JA7A 4H2FA 3H64A 2WDEA 1WAO1 2GJUA 5EQVA 3IB7A 3H61A 4O4KA 4IYPC 3THNA 4IL1A 4KKZA 3THOB 5INBA 1UF3A 2NYLC 2AHDA 3RL5A 1JK7A 4Q7FA 4V0VA 3QG5C 4J6OA 3E0JA 3ICFA 5JJTA 3IVDA 5IOHA 4MOYA 3QFNA 2Z06A 5GTUA 2Z72A 2YEQA 3P71C 2Q8UA 3K7WC 3N5UA 4FBQA 2DFJA 4UWQA 1G5BA 1KBPA 3HVQA 1S3NA 1HO5A 3H67A 4TUGA 3QFOA 3PSOA 2YVTA 5JPFA 5F3WA 2ZOAA 4FBKA 3E7BA 1HP1A 1Z2XA 2BDXA 3CK2A 3E7AA 4H2IA 4V0WA 1T71A 4YKEA 1TCOA 2A22A 4ORCA 2USHA 3DSDA 3V4YA 5J28A 4FCXA 1XZWA 2HYPA 4O24A 4ZVZA 4V0XA 2KKNA 1OIEA 1S3LA 4ORAA 4F0ZA 4TUIA 2IE4C 1QHWA 2CV9A 3H60A 3T1IA 3KBPA 1USHA 2BCDA 3K7VC 2IE3C 2XMOA 3LL8A 3QFMA 2NYMC 4WWLA 2R17A 2DXNA 1WARA 2BQ8X 2QJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OI8 A;  5HPE A;  2P6B A;  1OID A;  4LAC C;  4DT2 A;  2QFP A;  4I5L C;  2HY1 A;  5B8I A;  2NPP C;  1S3M A;  4H2G A;  1II7 A;  3H66 A;  3DSC A;  1S8E A;  4ORB A;  1S95 A;  3ZU0 A;  1MF8 A;  1QFC A;  2WDF A;  4UT3 A;  3RQZ A;  3H63 A;  3DW8 C;  1AUI A;  3EGH A;  4M0V A;  4OR9 A;  2NXF A;  3IB8 A;  4H2B A;  4MOV A;  2HYO A;  2WDD A;  5C1V A;  4DHL A;  2O8G A;  3AV0 A;  3GVE A;  4O43 A;  4XPN A;  2Z1A A;  1FJM A;  1U32 A;  4LTY A;  1Z2W A;  4KBP A;  5JPE A;  3H62 B;  3C9F A;  1M63 A;  5DNY A;  1SU1 A;  3PSN A;  4H1S A;  1IT6 A;  2WDC A;  1W24 A;  4LU9 A;  4G9J A;  3RL4 A;  1HPU A;  3TGH A;  3H68 A;  3ZTV A;  3AUZ A;  4MP0 A;  3IVE A;  4O5G A;  1XM7 A;  4FBW A;  3RL3 A;  2O8A A;  1T70 A;  3H69 A;  4H1Y P;  4I5N C;  1NNW A;  3EGG A;  3C5W C;  3QFK A;  4NZV A;  3FGA C;  4UT3 B;  4ZX2 A;  1S70 A;  1V73 A;  4DSY A;  1UTE A;  4HD0 A;  3JYF A;  2QFR A;  2JOG A;  4UT2 A;  4B2O A;  4JA9 A;  2IAE C;  2ZBM A;  4JA7 A;  4H2F A;  3H64 A;  2WDE A;  1WAO 1;  2GJU A;  5EQV A;  3IB7 A;  3H61 A;  4O4K A;  4IYP C;  3THN A;  4IL1 A;  4KKZ A;  3THO B;  5INB A;  1UF3 A;  2NYL C;  2AHD A;  3RL5 A;  1JK7 A;  4Q7F A;  4V0V A;  3QG5 C;  4J6O A;  3ICF A;  5JJT A;  3IVD A;  5IOH A;  4MOY A;  3QFN A;  2Z06 A;  5GTU A;  2Z72 A;  3P71 C;  2Q8U A;  3K7W C;  3N5U A;  4FBQ A;  2DFJ A;  4UWQ A;  1G5B A;  1KBP A;  3HVQ A;  1S3N A;  1HO5 A;  3H67 A;  4TUG A;  3QFO A;  3PSO A;  2YVT A;  5JPF A;  5F3W A;  4FBK A;  3E7B A;  1HP1 A;  1Z2X A;  2BDX A;  3CK2 A;  3E7A A;  4H2I A;  4V0W A;  1T71 A;  4YKE A;  1TCO A;  2A22 A;  4ORC A;  2USH A;  3DSD A;  3V4Y A;  5J28 A;  4FCX A;  1XZW A;  2HYP A;  4O24 A;  4ZVZ A;  4V0X A;  2KKN A;  1OIE A;  1S3L A;  4ORA A;  4F0Z A;  4TUI A;  2IE4 C;  1QHW A;  2CV9 A;  3H60 A;  3T1I A;  3KBP A;  1USH A;  2BCD A;  3K7V C;  2IE3 C;  2XMO A;  3LL8 A;  3QFM A;  2NYM C;  4WWL A;  2R17 A;  1WAR A;  2BQ8 X;  2QJC A; 
#chains in the Genus database with same CATH topology
 1OI8 A;  5HPE A;  2P6B A;  1OID A;  4LAC C;  4DT2 A;  2QFP A;  4I5L C;  2HY1 A;  5B8I A;  2NPP C;  1S3M A;  4H2G A;  1II7 A;  3H66 A;  3DSC A;  1S8E A;  3FLO A;  1S95 A;  4ORB A;  3ZU0 A;  1MF8 A;  1QFC A;  2WDF A;  4UT3 A;  3RQZ A;  2ZO9 B;  3H63 A;  3DW8 C;  1AUI A;  3EGH A;  4M0V A;  4OR9 A;  2NXF A;  3IB8 A;  4H2B A;  4MOV A;  2DXL A;  2HYO A;  2WDD A;  5C1V A;  4DHL A;  2O8G A;  3AV0 A;  3GVE A;  4O43 A;  4XPN A;  2Z1A A;  1FJM A;  1U32 A;  4LTY A;  1Z2W A;  4KBP A;  5JPE A;  3H62 B;  3C9F A;  1M63 A;  5DNY A;  1SU1 A;  3PSN A;  4H1S A;  1IT6 A;  2WDC A;  1W24 A;  4LU9 A;  4G9J A;  3RL4 A;  1HPU A;  3TGH A;  3H68 A;  3ZTV A;  3D03 A;  3AUZ A;  4MP0 A;  3IVE A;  4O5G A;  1XM7 A;  4FBW A;  3RL3 A;  2O8A A;  1T70 A;  3H69 A;  4H1Y P;  4I5N C;  1NNW A;  3EGG A;  3C5W C;  3QFK A;  4NZV A;  3FGA C;  4UT3 B;  4ZX2 A;  1S70 A;  1V73 A;  4DSY A;  1UTE A;  4HD0 A;  3JYF A;  2QFR A;  2JOG A;  4UT2 A;  4B2O A;  4JA9 A;  2IAE C;  2ZBM A;  4JA7 A;  4H2F A;  3H64 A;  2WDE A;  1WAO 1;  2GJU A;  5EQV A;  3IB7 A;  3H61 A;  4O4K A;  4IYP C;  3THN A;  4IL1 A;  4KKZ A;  3THO B;  5INB A;  1UF3 A;  2NYL C;  2AHD A;  3RL5 A;  1JK7 A;  4Q7F A;  4V0V A;  3QG5 C;  4J6O A;  3E0J A;  3ICF A;  5JJT A;  3IVD A;  5IOH A;  4MOY A;  3QFN A;  2Z06 A;  5GTU A;  2Z72 A;  2YEQ A;  3P71 C;  2Q8U A;  3K7W C;  3N5U A;  4FBQ A;  2DFJ A;  4UWQ A;  1G5B A;  1KBP A;  3HVQ A;  1S3N A;  1HO5 A;  3H67 A;  4TUG A;  3QFO A;  3PSO A;  2YVT A;  5JPF A;  5F3W A;  2ZOA A;  4FBK A;  3E7B A;  1HP1 A;  1Z2X A;  2BDX A;  3CK2 A;  3E7A A;  4H2I A;  4V0W A;  1T71 A;  4YKE A;  1TCO A;  2A22 A;  4ORC A;  2USH A;  3DSD A;  3V4Y A;  5J28 A;  4FCX A;  1XZW A;  2HYP A;  4O24 A;  4ZVZ A;  4V0X A;  2KKN A;  1OIE A;  1S3L A;  4ORA A;  4F0Z A;  4TUI A;  2IE4 C;  1QHW A;  2CV9 A;  3H60 A;  3T1I A;  3KBP A;  1USH A;  2BCD A;  3K7V C;  2IE3 C;  2XMO A;  3LL8 A;  3QFM A;  2NYM C;  4WWL A;  2R17 A;  2DXN A;  1WAR A;  2BQ8 X;  2QJC A; 
#chains in the Genus database with same CATH homology
 1OI8 A;  5HPE A;  2P6B A;  1OID A;  4LAC C;  4DT2 A;  2QFP A;  4I5L C;  2HY1 A;  5B8I A;  2NPP C;  1S3M A;  4H2G A;  1II7 A;  3H66 A;  3DSC A;  1S8E A;  3FLO A;  1S95 A;  4ORB A;  3ZU0 A;  1MF8 A;  1QFC A;  2WDF A;  4UT3 A;  3RQZ A;  2ZO9 B;  3H63 A;  3DW8 C;  1AUI A;  3EGH A;  4M0V A;  4OR9 A;  2NXF A;  3IB8 A;  4H2B A;  4MOV A;  2DXL A;  2HYO A;  2WDD A;  5C1V A;  4DHL A;  2O8G A;  3AV0 A;  3GVE A;  4O43 A;  4XPN A;  2Z1A A;  1FJM A;  1U32 A;  4LTY A;  1Z2W A;  4KBP A;  5JPE A;  3H62 B;  3C9F A;  1M63 A;  5DNY A;  1SU1 A;  3PSN A;  4H1S A;  1IT6 A;  2WDC A;  1W24 A;  4LU9 A;  4G9J A;  3RL4 A;  1HPU A;  3TGH A;  3H68 A;  3ZTV A;  3D03 A;  3AUZ A;  4MP0 A;  3IVE A;  4O5G A;  1XM7 A;  4FBW A;  3RL3 A;  2O8A A;  1T70 A;  3H69 A;  4H1Y P;  4I5N C;  1NNW A;  3EGG A;  3C5W C;  3QFK A;  4NZV A;  3FGA C;  4UT3 B;  4ZX2 A;  1S70 A;  1V73 A;  4DSY A;  1UTE A;  4HD0 A;  3JYF A;  2QFR A;  2JOG A;  4UT2 A;  4B2O A;  4JA9 A;  2IAE C;  2ZBM A;  4JA7 A;  4H2F A;  3H64 A;  2WDE A;  1WAO 1;  2GJU A;  5EQV A;  3IB7 A;  3H61 A;  4O4K A;  4IYP C;  3THN A;  4IL1 A;  4KKZ A;  3THO B;  5INB A;  1UF3 A;  2NYL C;  2AHD A;  3RL5 A;  1JK7 A;  4Q7F A;  4V0V A;  3QG5 C;  4J6O A;  3E0J A;  3ICF A;  5JJT A;  3IVD A;  5IOH A;  4MOY A;  3QFN A;  2Z06 A;  5GTU A;  2Z72 A;  2YEQ A;  3P71 C;  2Q8U A;  3K7W C;  3N5U A;  4FBQ A;  2DFJ A;  4UWQ A;  1G5B A;  1KBP A;  3HVQ A;  1S3N A;  1HO5 A;  3H67 A;  4TUG A;  3QFO A;  3PSO A;  2YVT A;  5JPF A;  5F3W A;  2ZOA A;  4FBK A;  3E7B A;  1HP1 A;  1Z2X A;  2BDX A;  3CK2 A;  3E7A A;  4H2I A;  4V0W A;  1T71 A;  4YKE A;  1TCO A;  2A22 A;  4ORC A;  2USH A;  3DSD A;  3V4Y A;  5J28 A;  4FCX A;  1XZW A;  2HYP A;  4O24 A;  4ZVZ A;  4V0X A;  2KKN A;  1OIE A;  1S3L A;  4ORA A;  4F0Z A;  4TUI A;  2IE4 C;  1QHW A;  2CV9 A;  3H60 A;  3T1I A;  3KBP A;  1USH A;  2BCD A;  3K7V C;  2IE3 C;  2XMO A;  3LL8 A;  3QFM A;  2NYM C;  4WWL A;  2R17 A;  2DXN A;  1WAR A;  2BQ8 X;  2QJC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...