2WDFA

Termus thermophilus sulfate thiohydrolase soxb
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
544
structure length
544
Chain Sequence
SLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 191
structure length 544
sequence length 544
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdfA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdfA03
4H1SA 4ZVZA 3RL4A 3IVEA 1Z2WA 1OI8A 4H2GA 1G5BA 4M0VA 4ORAA 2NXFA 4LACC 4FCXA 3AV0A 3RL5A 4H1YP 3PSNA 4O4KA 5HPEA 1S3MA 1UTEA 3DSCA 3H63A 1HP1A 1XZWA 5C1VA 4FBKA 3H62B 3EGHA 2WDDA 5INBA 2Z1AA 3CK2A 3THOB 5JPEA 2WDEA 2NYMC 4KBPA 2AHDA 4DHLA 2DFJA 3T1IA 1S3LA 2GJUA 1XM7A 5B8IA 2WDFA 2Z72A 1S8EA 3H68A 5F3WA 1MF8A 4IYPC 1JK7A 5J28A 1T71A 3H61A 3EGGA 1UF3A 4H2BA 3K7VC 3HVQA 3IB8A 4KKZA 2WDCA 3LL8A 1M63A 3PSOA 1SU1A 2IAEC 3AUZA 2O8GA 3QFKA 5GTUA 4V0XA 4YKEA 2HYPA 1FJMA 1U32A 3H66A 2HY1A 3QFMA 4MOVA 2CV9A 2NPPC 3IVDA 5DNYA 4O24A 1HO5A 3E7BA 4UT3A 3JYFA 1S95A 4MOYA 2Q8UA 4ORBA 5JPFA 2Z06A 2BQ8X 2HYOA 4LU9A 2KKNA 3QFOA 2ZBMA 4TUGA 1OIEA 3C9FA 4O43A 2JOGA 1V73A 4J6OA 4ORCA 4DSYA 4HD0A 3V4YA 4UT2A 1OIDA 2R17A 4DT2A 1KBPA 3DSDA 2O8AA 4G9JA 4H2FA 4OR9A 4UWQA 3RQZA 2QFPA 4V0VA 2BCDA 3KBPA 3H64A 1USHA 3H69A 4I5NC 3K7WC 5IOHA 2XMOA 1T70A 2P6BA 3P71C 1IT6A 3ZU0A 2USHA 4NZVA 1WAO1 4F0ZA 3DW8C 2IE4C 2A22A 2BDXA 1TCOA 3RL3A 4FBQA 1WARA 4MP0A 1W24A 1QHWA 1II7A 4H2IA 2YVTA 5EQVA 4LTYA 3QFNA 3H60A 1NNWA 1HPUA 2QFRA 2QJCA 4JA7A 4IL1A 4JA9A 4UT3B 2NYLC 4O5GA 4TUIA 3E7AA 1S3NA 3FGAC 1Z2XA 4V0WA 5JJTA 3GVEA 4FBWA 1QFCA 4XPNA 4I5LC 1S70A 3ZTVA 3H67A 3THNA 1AUIA 3TGHA 4B2OA 3QG5C 4Q7FA 4ZX2A 3C5WC 3IB7A 3ICFA 4WWLA 2IE3C 3N5UA
chains in the Genus database with same CATH superfamily
4H1SA 4ZVZA 3RL4A 3IVEA 1Z2WA 1OI8A 4H2GA 1G5BA 4M0VA 4ORAA 2NXFA 4LACC 4FCXA 2ZOAA 3AV0A 3RL5A 4H1YP 3PSNA 4O4KA 5HPEA 1S3MA 1UTEA 3DSCA 3H63A 1HP1A 1XZWA 5C1VA 4FBKA 3H62B 3EGHA 2WDDA 5INBA 2Z1AA 3CK2A 3THOB 5JPEA 3FLOA 2WDEA 2NYMC 4KBPA 2AHDA 4DHLA 2DFJA 3T1IA 1S3LA 2GJUA 1XM7A 5B8IA 2WDFA 2Z72A 1S8EA 3H68A 5F3WA 1MF8A 4IYPC 1JK7A 5J28A 1T71A 3H61A 3EGGA 1UF3A 4H2BA 3K7VC 3HVQA 3IB8A 4KKZA 2WDCA 3LL8A 1M63A 3PSOA 1SU1A 2DXNA 2IAEC 3AUZA 2O8GA 3QFKA 5GTUA 4V0XA 4YKEA 2HYPA 1FJMA 1U32A 3H66A 2HY1A 3QFMA 4MOVA 2CV9A 2NPPC 3IVDA 5DNYA 4O24A 1HO5A 3E7BA 4UT3A 3JYFA 3E0JA 1S95A 4MOYA 2Q8UA 4ORBA 5JPFA 2Z06A 2BQ8X 2HYOA 4LU9A 2KKNA 3QFOA 2ZBMA 4TUGA 1OIEA 3C9FA 4O43A 2JOGA 1V73A 4J6OA 4ORCA 4DSYA 4HD0A 3V4YA 4UT2A 1OIDA 2R17A 4DT2A 1KBPA 3DSDA 2O8AA 4G9JA 4H2FA 4OR9A 4UWQA 3RQZA 2QFPA 4V0VA 2BCDA 3KBPA 3H64A 1USHA 3H69A 4I5NC 3K7WC 5IOHA 2XMOA 1T70A 2P6BA 3P71C 1IT6A 3ZU0A 2USHA 4NZVA 1WAO1 2ZO9B 4F0ZA 3DW8C 2IE4C 2A22A 2BDXA 1TCOA 3RL3A 4FBQA 1WARA 4MP0A 1W24A 1QHWA 1II7A 4H2IA 2YVTA 5EQVA 4LTYA 3QFNA 3H60A 1NNWA 1HPUA 2QFRA 2QJCA 4JA7A 4IL1A 4JA9A 4UT3B 2NYLC 4O5GA 2YEQA 4TUIA 3E7AA 1S3NA 3FGAC 3D03A 1Z2XA 2DXLA 4V0WA 5JJTA 3GVEA 4FBWA 1QFCA 4XPNA 4I5LC 1S70A 3ZTVA 3H67A 3THNA 1AUIA 3TGHA 4B2OA 3QG5C 4Q7FA 4ZX2A 3C5WC 3IB7A 3ICFA 4WWLA 2IE3C 3N5UA
chains in the Genus database with same CATH topology
4H1SA 4ZVZA 3RL4A 3IVEA 1Z2WA 1OI8A 4H2GA 1G5BA 4M0VA 4ORAA 2NXFA 4LACC 4FCXA 2ZOAA 3AV0A 3RL5A 4H1YP 3PSNA 4O4KA 5HPEA 1S3MA 1UTEA 3DSCA 3H63A 1HP1A 1XZWA 5C1VA 4FBKA 3H62B 3EGHA 2WDDA 5INBA 2Z1AA 3CK2A 3THOB 5JPEA 3FLOA 2WDEA 2NYMC 4KBPA 2AHDA 4DHLA 2DFJA 3T1IA 1S3LA 2GJUA 1XM7A 5B8IA 2WDFA 2Z72A 1S8EA 3H68A 5F3WA 1MF8A 4IYPC 1JK7A 5J28A 1T71A 3H61A 3EGGA 1UF3A 4H2BA 3K7VC 3HVQA 3IB8A 4KKZA 2WDCA 3LL8A 1M63A 3PSOA 1SU1A 2DXNA 2IAEC 3AUZA 2O8GA 3QFKA 5GTUA 4V0XA 4YKEA 2HYPA 1FJMA 1U32A 3H66A 2HY1A 3QFMA 4MOVA 2CV9A 2NPPC 3IVDA 5DNYA 4O24A 1HO5A 3E7BA 4UT3A 3JYFA 3E0JA 1S95A 4MOYA 2Q8UA 4ORBA 5JPFA 2Z06A 2BQ8X 2HYOA 4LU9A 2KKNA 3QFOA 2ZBMA 4TUGA 1OIEA 3C9FA 4O43A 2JOGA 1V73A 4J6OA 4ORCA 4DSYA 4HD0A 3V4YA 4UT2A 1OIDA 2R17A 4DT2A 1KBPA 3DSDA 2O8AA 4G9JA 4H2FA 4OR9A 4UWQA 3RQZA 2QFPA 4V0VA 2BCDA 3KBPA 3H64A 1USHA 3H69A 4I5NC 3K7WC 5IOHA 2XMOA 1T70A 2P6BA 3P71C 1IT6A 3ZU0A 2USHA 4NZVA 1WAO1 2ZO9B 4F0ZA 3DW8C 2IE4C 2A22A 2BDXA 1TCOA 3RL3A 4FBQA 1WARA 4MP0A 1W24A 1QHWA 1II7A 4H2IA 2YVTA 5EQVA 4LTYA 3QFNA 3H60A 1NNWA 1HPUA 2QFRA 2QJCA 4JA7A 4IL1A 4JA9A 4UT3B 2NYLC 4O5GA 2YEQA 4TUIA 3E7AA 1S3NA 3FGAC 3D03A 1Z2XA 2DXLA 4V0WA 5JJTA 3GVEA 4FBWA 1QFCA 4XPNA 4I5LC 1S70A 3ZTVA 3H67A 3THNA 1AUIA 3TGHA 4B2OA 3QG5C 4Q7FA 4ZX2A 3C5WC 3IB7A 3ICFA 4WWLA 2IE3C 3N5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H1S A;  4ZVZ A;  3RL4 A;  3IVE A;  1Z2W A;  1OI8 A;  4H2G A;  1G5B A;  4M0V A;  4ORA A;  2NXF A;  4LAC C;  4FCX A;  3AV0 A;  3RL5 A;  4H1Y P;  3PSN A;  4O4K A;  5HPE A;  1S3M A;  1UTE A;  3DSC A;  3H63 A;  1HP1 A;  1XZW A;  5C1V A;  4FBK A;  3H62 B;  3EGH A;  2WDD A;  5INB A;  2Z1A A;  3CK2 A;  3THO B;  5JPE A;  2WDE A;  2NYM C;  4KBP A;  2AHD A;  4DHL A;  2DFJ A;  3T1I A;  1S3L A;  2GJU A;  1XM7 A;  5B8I A;  2WDF A;  2Z72 A;  1S8E A;  3H68 A;  5F3W A;  1MF8 A;  4IYP C;  1JK7 A;  5J28 A;  1T71 A;  3H61 A;  3EGG A;  1UF3 A;  4H2B A;  3K7V C;  3HVQ A;  3IB8 A;  4KKZ A;  2WDC A;  3LL8 A;  1M63 A;  3PSO A;  1SU1 A;  2IAE C;  3AUZ A;  2O8G A;  3QFK A;  5GTU A;  4V0X A;  4YKE A;  2HYP A;  1FJM A;  1U32 A;  3H66 A;  2HY1 A;  3QFM A;  4MOV A;  2CV9 A;  2NPP C;  3IVD A;  5DNY A;  4O24 A;  1HO5 A;  3E7B A;  4UT3 A;  3JYF A;  1S95 A;  4MOY A;  2Q8U A;  4ORB A;  5JPF A;  2Z06 A;  2BQ8 X;  2HYO A;  4LU9 A;  2KKN A;  3QFO A;  2ZBM A;  4TUG A;  1OIE A;  3C9F A;  4O43 A;  2JOG A;  1V73 A;  4J6O A;  4ORC A;  4DSY A;  4HD0 A;  3V4Y A;  4UT2 A;  1OID A;  2R17 A;  4DT2 A;  1KBP A;  3DSD A;  2O8A A;  4G9J A;  4H2F A;  4OR9 A;  4UWQ A;  3RQZ A;  2QFP A;  4V0V A;  2BCD A;  3KBP A;  3H64 A;  1USH A;  3H69 A;  4I5N C;  3K7W C;  5IOH A;  2XMO A;  1T70 A;  2P6B A;  3P71 C;  1IT6 A;  3ZU0 A;  2USH A;  4NZV A;  1WAO 1;  4F0Z A;  3DW8 C;  2IE4 C;  2A22 A;  2BDX A;  1TCO A;  3RL3 A;  4FBQ A;  1WAR A;  4MP0 A;  1W24 A;  1QHW A;  1II7 A;  4H2I A;  2YVT A;  5EQV A;  4LTY A;  3QFN A;  3H60 A;  1NNW A;  1HPU A;  2QFR A;  2QJC A;  4JA7 A;  4IL1 A;  4JA9 A;  4UT3 B;  2NYL C;  4O5G A;  4TUI A;  3E7A A;  1S3N A;  3FGA C;  1Z2X A;  4V0W A;  5JJT A;  3GVE A;  4FBW A;  1QFC A;  4XPN A;  4I5L C;  1S70 A;  3ZTV A;  3H67 A;  3THN A;  1AUI A;  3TGH A;  4B2O A;  3QG5 C;  4Q7F A;  4ZX2 A;  3C5W C;  3IB7 A;  3ICF A;  4WWL A;  2IE3 C;  3N5U A; 
#chains in the Genus database with same CATH topology
 4H1S A;  4ZVZ A;  3RL4 A;  3IVE A;  1Z2W A;  1OI8 A;  4H2G A;  1G5B A;  4M0V A;  4ORA A;  2NXF A;  4LAC C;  4FCX A;  2ZOA A;  3AV0 A;  3RL5 A;  4H1Y P;  3PSN A;  4O4K A;  5HPE A;  1S3M A;  1UTE A;  3DSC A;  3H63 A;  1HP1 A;  1XZW A;  5C1V A;  4FBK A;  3H62 B;  3EGH A;  2WDD A;  5INB A;  2Z1A A;  3CK2 A;  3THO B;  5JPE A;  3FLO A;  2WDE A;  2NYM C;  4KBP A;  2AHD A;  4DHL A;  2DFJ A;  3T1I A;  1S3L A;  2GJU A;  1XM7 A;  5B8I A;  2WDF A;  2Z72 A;  1S8E A;  3H68 A;  5F3W A;  1MF8 A;  4IYP C;  1JK7 A;  5J28 A;  1T71 A;  3H61 A;  3EGG A;  1UF3 A;  4H2B A;  3K7V C;  3HVQ A;  3IB8 A;  4KKZ A;  2WDC A;  3LL8 A;  1M63 A;  3PSO A;  1SU1 A;  2DXN A;  2IAE C;  3AUZ A;  2O8G A;  3QFK A;  5GTU A;  4V0X A;  4YKE A;  2HYP A;  1FJM A;  1U32 A;  3H66 A;  2HY1 A;  3QFM A;  4MOV A;  2CV9 A;  2NPP C;  3IVD A;  5DNY A;  4O24 A;  1HO5 A;  3E7B A;  4UT3 A;  3JYF A;  3E0J A;  1S95 A;  4MOY A;  2Q8U A;  4ORB A;  5JPF A;  2Z06 A;  2BQ8 X;  2HYO A;  4LU9 A;  2KKN A;  3QFO A;  2ZBM A;  4TUG A;  1OIE A;  3C9F A;  4O43 A;  2JOG A;  1V73 A;  4J6O A;  4ORC A;  4DSY A;  4HD0 A;  3V4Y A;  4UT2 A;  1OID A;  2R17 A;  4DT2 A;  1KBP A;  3DSD A;  2O8A A;  4G9J A;  4H2F A;  4OR9 A;  4UWQ A;  3RQZ A;  2QFP A;  4V0V A;  2BCD A;  3KBP A;  3H64 A;  1USH A;  3H69 A;  4I5N C;  3K7W C;  5IOH A;  2XMO A;  1T70 A;  2P6B A;  3P71 C;  1IT6 A;  3ZU0 A;  2USH A;  4NZV A;  1WAO 1;  2ZO9 B;  4F0Z A;  3DW8 C;  2IE4 C;  2A22 A;  2BDX A;  1TCO A;  3RL3 A;  4FBQ A;  1WAR A;  4MP0 A;  1W24 A;  1QHW A;  1II7 A;  4H2I A;  2YVT A;  5EQV A;  4LTY A;  3QFN A;  3H60 A;  1NNW A;  1HPU A;  2QFR A;  2QJC A;  4JA7 A;  4IL1 A;  4JA9 A;  4UT3 B;  2NYL C;  4O5G A;  2YEQ A;  4TUI A;  3E7A A;  1S3N A;  3FGA C;  3D03 A;  1Z2X A;  2DXL A;  4V0W A;  5JJT A;  3GVE A;  4FBW A;  1QFC A;  4XPN A;  4I5L C;  1S70 A;  3ZTV A;  3H67 A;  3THN A;  1AUI A;  3TGH A;  4B2O A;  3QG5 C;  4Q7F A;  4ZX2 A;  3C5W C;  3IB7 A;  3ICF A;  4WWL A;  2IE3 C;  3N5U A; 
#chains in the Genus database with same CATH homology
 4H1S A;  4ZVZ A;  3RL4 A;  3IVE A;  1Z2W A;  1OI8 A;  4H2G A;  1G5B A;  4M0V A;  4ORA A;  2NXF A;  4LAC C;  4FCX A;  2ZOA A;  3AV0 A;  3RL5 A;  4H1Y P;  3PSN A;  4O4K A;  5HPE A;  1S3M A;  1UTE A;  3DSC A;  3H63 A;  1HP1 A;  1XZW A;  5C1V A;  4FBK A;  3H62 B;  3EGH A;  2WDD A;  5INB A;  2Z1A A;  3CK2 A;  3THO B;  5JPE A;  3FLO A;  2WDE A;  2NYM C;  4KBP A;  2AHD A;  4DHL A;  2DFJ A;  3T1I A;  1S3L A;  2GJU A;  1XM7 A;  5B8I A;  2WDF A;  2Z72 A;  1S8E A;  3H68 A;  5F3W A;  1MF8 A;  4IYP C;  1JK7 A;  5J28 A;  1T71 A;  3H61 A;  3EGG A;  1UF3 A;  4H2B A;  3K7V C;  3HVQ A;  3IB8 A;  4KKZ A;  2WDC A;  3LL8 A;  1M63 A;  3PSO A;  1SU1 A;  2DXN A;  2IAE C;  3AUZ A;  2O8G A;  3QFK A;  5GTU A;  4V0X A;  4YKE A;  2HYP A;  1FJM A;  1U32 A;  3H66 A;  2HY1 A;  3QFM A;  4MOV A;  2CV9 A;  2NPP C;  3IVD A;  5DNY A;  4O24 A;  1HO5 A;  3E7B A;  4UT3 A;  3JYF A;  3E0J A;  1S95 A;  4MOY A;  2Q8U A;  4ORB A;  5JPF A;  2Z06 A;  2BQ8 X;  2HYO A;  4LU9 A;  2KKN A;  3QFO A;  2ZBM A;  4TUG A;  1OIE A;  3C9F A;  4O43 A;  2JOG A;  1V73 A;  4J6O A;  4ORC A;  4DSY A;  4HD0 A;  3V4Y A;  4UT2 A;  1OID A;  2R17 A;  4DT2 A;  1KBP A;  3DSD A;  2O8A A;  4G9J A;  4H2F A;  4OR9 A;  4UWQ A;  3RQZ A;  2QFP A;  4V0V A;  2BCD A;  3KBP A;  3H64 A;  1USH A;  3H69 A;  4I5N C;  3K7W C;  5IOH A;  2XMO A;  1T70 A;  2P6B A;  3P71 C;  1IT6 A;  3ZU0 A;  2USH A;  4NZV A;  1WAO 1;  2ZO9 B;  4F0Z A;  3DW8 C;  2IE4 C;  2A22 A;  2BDX A;  1TCO A;  3RL3 A;  4FBQ A;  1WAR A;  4MP0 A;  1W24 A;  1QHW A;  1II7 A;  4H2I A;  2YVT A;  5EQV A;  4LTY A;  3QFN A;  3H60 A;  1NNW A;  1HPU A;  2QFR A;  2QJC A;  4JA7 A;  4IL1 A;  4JA9 A;  4UT3 B;  2NYL C;  4O5G A;  2YEQ A;  4TUI A;  3E7A A;  1S3N A;  3FGA C;  3D03 A;  1Z2X A;  2DXL A;  4V0W A;  5JJT A;  3GVE A;  4FBW A;  1QFC A;  4XPN A;  4I5L C;  1S70 A;  3ZTV A;  3H67 A;  3THN A;  1AUI A;  3TGH A;  4B2O A;  3QG5 C;  4Q7F A;  4ZX2 A;  3C5W C;  3IB7 A;  3ICF A;  4WWL A;  2IE3 C;  3N5U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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