2WDFA

Termus thermophilus sulfate thiohydrolase soxb
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
544
structure length
544
Chain Sequence
SLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords SULFUR OXIDATION PROTEIN SOXB
total genus 191
structure length 544
sequence length 544
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdfA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdfA03
2QFRA 5JPEA 1M63A 3TGHA 3HVQA 3GVEA 1QHWA 1OIDA 4O24A 1USHA 4KBPA 3H68A 4ORBA 4UT3B 3RL3A 4V0VA 4V0WA 2BCDA 4ZX2A 4H2FA 3H67A 3RQZA 1XM7A 2R17A 5JPFA 4B2OA 3H66A 1JK7A 3N5UA 4UT3A 3FGAC 1S3NA 2USHA 4O43A 3K7VC 4YKEA 1XZWA 2BQ8X 4J6OA 3PSOA 4TUIA 1QFCA 4JA9A 4H1SA 1S3LA 3CK2A 1OIEA 3QFKA 4M0VA 5INBA 2A22A 2GJUA 1T70A 3QFMA 3IVEA 4XPNA 1Z2XA 4ZVZA 3JYFA 4LU9A 4UT2A 3ZU0A 3EGHA 1V73A 3ZTVA 4H1YP 4FBQA 4H2IA 2HYPA 1UTEA 2AHDA 3IB7A 1MF8A 1S70A 1S3MA 1SU1A 3PSNA 4IYPC 3V4YA 4WWLA 3QFNA 2Z72A 3QG5C 2Q8UA 3QFOA 4H2GA 3H62B 2YVTA 4O5GA 5JJTA 2KKNA 2IE3C 3K7WC 3DSDA 1S8EA 4UWQA 2BDXA 1Z2WA 4O4KA 2CV9A 1KBPA 2DFJA 4FBKA 1T71A 3H60A 4JA7A 2XMOA 4MOYA 4OR9A 1NNWA 1FJMA 3THOB 3E7BA 2WDCA 2ZBMA 3H63A 3KBPA 1WAO1 5HPEA 4FBWA 3P71C 4FCXA 4MP0A 2IE4C 1IT6A 1S95A 4H2BA 4HD0A 1HPUA 4DT2A 3C9FA 5B8IA 2WDFA 1W24A 4DSYA 2Z06A 5EQVA 3DSCA 4I5LC 1HP1A 4LACC 2QFPA 2JOGA 1TCOA 2NYLC 4LTYA 3IB8A 2QJCA 4NZVA 3LL8A 3AV0A 5J28A 3AUZA 4MOVA 1WARA 5C1VA 1AUIA 2HYOA 2NPPC 1G5BA 3EGGA 2P6BA 1OI8A 2HY1A 3ICFA 2IAEC 4IL1A 4ORAA 4F0ZA 5GTUA 3H64A 1HO5A 2NYMC 1UF3A 3RL5A 1U32A 3E7AA 4Q7FA 3THNA 2WDEA 4KKZA 3H69A 3T1IA 2NXFA 4DHLA 4ORCA 2Z1AA 3RL4A 2O8GA 3C5WC 3H61A 4TUGA 4G9JA 3IVDA 4V0XA 1II7A 5IOHA 2O8AA 5F3WA 2WDDA 5DNYA 4I5NC 3DW8C
chains in the Genus database with same CATH superfamily
2QFRA 5JPEA 1M63A 3TGHA 3HVQA 3GVEA 1QHWA 1OIDA 4O24A 1USHA 4KBPA 3H68A 4ORBA 4UT3B 2ZOAA 3RL3A 4V0VA 4V0WA 2BCDA 4ZX2A 4H2FA 3H67A 3RQZA 1XM7A 2R17A 5JPFA 4B2OA 3H66A 1JK7A 3N5UA 4UT3A 3FGAC 1S3NA 2DXLA 2USHA 4O43A 2ZO9B 3K7VC 4YKEA 1XZWA 2BQ8X 4J6OA 3PSOA 4TUIA 1QFCA 4JA9A 4H1SA 1S3LA 3CK2A 1OIEA 3QFKA 4M0VA 5INBA 2A22A 2GJUA 1T70A 3QFMA 3IVEA 4XPNA 1Z2XA 3D03A 3JYFA 4ZVZA 4LU9A 4UT2A 3E0JA 3ZU0A 3EGHA 1V73A 2DXNA 4H1YP 3ZTVA 4FBQA 4H2IA 2HYPA 1UTEA 2AHDA 3IB7A 1MF8A 1S70A 1S3MA 1SU1A 3PSNA 4IYPC 3V4YA 4WWLA 3QFNA 2Z72A 3QG5C 2Q8UA 3QFOA 4H2GA 3H62B 2YVTA 4O5GA 5JJTA 2KKNA 2IE3C 3K7WC 3DSDA 1S8EA 4UWQA 2BDXA 1Z2WA 4O4KA 2CV9A 1KBPA 2DFJA 4FBKA 1T71A 3H60A 4JA7A 2XMOA 4MOYA 4OR9A 1NNWA 1FJMA 3THOB 3E7BA 2WDCA 2ZBMA 3H63A 3KBPA 1WAO1 5HPEA 4FBWA 3P71C 4FCXA 4MP0A 2IE4C 1IT6A 1S95A 4H2BA 4HD0A 1HPUA 4DT2A 3C9FA 5B8IA 2WDFA 1W24A 4DSYA 2Z06A 5EQVA 3DSCA 4I5LC 1HP1A 4LACC 2QFPA 2JOGA 1TCOA 2NYLC 4LTYA 3IB8A 2QJCA 4NZVA 3LL8A 3AV0A 5J28A 3AUZA 3FLOA 4MOVA 1WARA 5C1VA 1AUIA 2HYOA 2NPPC 1G5BA 3EGGA 2P6BA 1OI8A 2HY1A 3ICFA 2IAEC 4IL1A 4ORAA 4F0ZA 5GTUA 3H64A 1HO5A 2NYMC 1UF3A 3RL5A 1U32A 3E7AA 4Q7FA 3THNA 2WDEA 4KKZA 3H69A 3T1IA 2YEQA 2NXFA 4DHLA 4ORCA 2Z1AA 3RL4A 2O8GA 3C5WC 3H61A 4TUGA 4G9JA 3IVDA 4V0XA 1II7A 5IOHA 2O8AA 5F3WA 2WDDA 5DNYA 4I5NC 3DW8C
chains in the Genus database with same CATH topology
2QFRA 5JPEA 1M63A 3TGHA 3HVQA 3GVEA 1QHWA 1OIDA 4O24A 1USHA 4KBPA 3H68A 4ORBA 4UT3B 2ZOAA 3RL3A 4V0VA 4V0WA 2BCDA 4ZX2A 4H2FA 3H67A 3RQZA 1XM7A 2R17A 5JPFA 4B2OA 3H66A 1JK7A 3N5UA 4UT3A 3FGAC 1S3NA 2DXLA 2USHA 4O43A 2ZO9B 3K7VC 4YKEA 1XZWA 2BQ8X 4J6OA 3PSOA 4TUIA 1QFCA 4JA9A 4H1SA 1S3LA 3CK2A 1OIEA 3QFKA 4M0VA 5INBA 2A22A 2GJUA 1T70A 3QFMA 3IVEA 4XPNA 1Z2XA 3D03A 3JYFA 4ZVZA 4LU9A 4UT2A 3E0JA 3ZU0A 3EGHA 1V73A 2DXNA 4H1YP 3ZTVA 4FBQA 4H2IA 2HYPA 1UTEA 2AHDA 3IB7A 1MF8A 1S70A 1S3MA 1SU1A 3PSNA 4IYPC 3V4YA 4WWLA 3QFNA 2Z72A 3QG5C 2Q8UA 3QFOA 4H2GA 3H62B 2YVTA 4O5GA 5JJTA 2KKNA 2IE3C 3K7WC 3DSDA 1S8EA 4UWQA 2BDXA 1Z2WA 4O4KA 2CV9A 1KBPA 2DFJA 4FBKA 1T71A 3H60A 4JA7A 2XMOA 4MOYA 4OR9A 1NNWA 1FJMA 3THOB 3E7BA 2WDCA 2ZBMA 3H63A 3KBPA 1WAO1 5HPEA 4FBWA 3P71C 4FCXA 4MP0A 2IE4C 1IT6A 1S95A 4H2BA 4HD0A 1HPUA 4DT2A 3C9FA 5B8IA 2WDFA 1W24A 4DSYA 2Z06A 5EQVA 3DSCA 4I5LC 1HP1A 4LACC 2QFPA 2JOGA 1TCOA 2NYLC 4LTYA 3IB8A 2QJCA 4NZVA 3LL8A 3AV0A 5J28A 3AUZA 3FLOA 4MOVA 1WARA 5C1VA 1AUIA 2HYOA 2NPPC 1G5BA 3EGGA 2P6BA 1OI8A 2HY1A 3ICFA 2IAEC 4IL1A 4ORAA 4F0ZA 5GTUA 3H64A 1HO5A 2NYMC 1UF3A 3RL5A 1U32A 3E7AA 4Q7FA 3THNA 2WDEA 4KKZA 3H69A 3T1IA 2YEQA 2NXFA 4DHLA 4ORCA 2Z1AA 3RL4A 2O8GA 3C5WC 3H61A 4TUGA 4G9JA 3IVDA 4V0XA 1II7A 5IOHA 2O8AA 5F3WA 2WDDA 5DNYA 4I5NC 3DW8C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFR A;  5JPE A;  1M63 A;  3TGH A;  3HVQ A;  3GVE A;  1QHW A;  1OID A;  4O24 A;  1USH A;  4KBP A;  3H68 A;  4ORB A;  4UT3 B;  3RL3 A;  4V0V A;  4V0W A;  2BCD A;  4ZX2 A;  4H2F A;  3H67 A;  3RQZ A;  1XM7 A;  2R17 A;  5JPF A;  4B2O A;  3H66 A;  1JK7 A;  3N5U A;  4UT3 A;  3FGA C;  1S3N A;  2USH A;  4O43 A;  3K7V C;  4YKE A;  1XZW A;  2BQ8 X;  4J6O A;  3PSO A;  4TUI A;  1QFC A;  4JA9 A;  4H1S A;  1S3L A;  3CK2 A;  1OIE A;  3QFK A;  4M0V A;  5INB A;  2A22 A;  2GJU A;  1T70 A;  3QFM A;  3IVE A;  4XPN A;  1Z2X A;  4ZVZ A;  3JYF A;  4LU9 A;  4UT2 A;  3ZU0 A;  3EGH A;  1V73 A;  3ZTV A;  4H1Y P;  4FBQ A;  4H2I A;  2HYP A;  1UTE A;  2AHD A;  3IB7 A;  1MF8 A;  1S70 A;  1S3M A;  1SU1 A;  3PSN A;  4IYP C;  3V4Y A;  4WWL A;  3QFN A;  2Z72 A;  3QG5 C;  2Q8U A;  3QFO A;  4H2G A;  3H62 B;  2YVT A;  4O5G A;  5JJT A;  2KKN A;  2IE3 C;  3K7W C;  3DSD A;  1S8E A;  4UWQ A;  2BDX A;  1Z2W A;  4O4K A;  2CV9 A;  1KBP A;  2DFJ A;  4FBK A;  1T71 A;  3H60 A;  4JA7 A;  2XMO A;  4MOY A;  4OR9 A;  1NNW A;  1FJM A;  3THO B;  3E7B A;  2WDC A;  2ZBM A;  3H63 A;  3KBP A;  1WAO 1;  5HPE A;  4FBW A;  3P71 C;  4FCX A;  4MP0 A;  2IE4 C;  1IT6 A;  1S95 A;  4H2B A;  4HD0 A;  1HPU A;  4DT2 A;  3C9F A;  5B8I A;  2WDF A;  1W24 A;  4DSY A;  2Z06 A;  5EQV A;  3DSC A;  4I5L C;  1HP1 A;  4LAC C;  2QFP A;  2JOG A;  1TCO A;  2NYL C;  4LTY A;  3IB8 A;  2QJC A;  4NZV A;  3LL8 A;  3AV0 A;  5J28 A;  3AUZ A;  4MOV A;  1WAR A;  5C1V A;  1AUI A;  2HYO A;  2NPP C;  1G5B A;  3EGG A;  2P6B A;  1OI8 A;  2HY1 A;  3ICF A;  2IAE C;  4IL1 A;  4ORA A;  4F0Z A;  5GTU A;  3H64 A;  1HO5 A;  2NYM C;  1UF3 A;  3RL5 A;  1U32 A;  3E7A A;  4Q7F A;  3THN A;  2WDE A;  4KKZ A;  3H69 A;  3T1I A;  2NXF A;  4DHL A;  4ORC A;  2Z1A A;  3RL4 A;  2O8G A;  3C5W C;  3H61 A;  4TUG A;  4G9J A;  3IVD A;  4V0X A;  1II7 A;  5IOH A;  2O8A A;  5F3W A;  2WDD A;  5DNY A;  4I5N C;  3DW8 C; 
#chains in the Genus database with same CATH topology
 2QFR A;  5JPE A;  1M63 A;  3TGH A;  3HVQ A;  3GVE A;  1QHW A;  1OID A;  4O24 A;  1USH A;  4KBP A;  3H68 A;  4ORB A;  4UT3 B;  2ZOA A;  3RL3 A;  4V0V A;  4V0W A;  2BCD A;  4ZX2 A;  4H2F A;  3H67 A;  3RQZ A;  1XM7 A;  2R17 A;  5JPF A;  4B2O A;  3H66 A;  1JK7 A;  3N5U A;  4UT3 A;  3FGA C;  1S3N A;  2DXL A;  2USH A;  4O43 A;  2ZO9 B;  3K7V C;  4YKE A;  1XZW A;  2BQ8 X;  4J6O A;  3PSO A;  4TUI A;  1QFC A;  4JA9 A;  4H1S A;  1S3L A;  3CK2 A;  1OIE A;  3QFK A;  4M0V A;  5INB A;  2A22 A;  2GJU A;  1T70 A;  3QFM A;  3IVE A;  4XPN A;  1Z2X A;  3D03 A;  3JYF A;  4ZVZ A;  4LU9 A;  4UT2 A;  3E0J A;  3ZU0 A;  3EGH A;  1V73 A;  2DXN A;  4H1Y P;  3ZTV A;  4FBQ A;  4H2I A;  2HYP A;  1UTE A;  2AHD A;  3IB7 A;  1MF8 A;  1S70 A;  1S3M A;  1SU1 A;  3PSN A;  4IYP C;  3V4Y A;  4WWL A;  3QFN A;  2Z72 A;  3QG5 C;  2Q8U A;  3QFO A;  4H2G A;  3H62 B;  2YVT A;  4O5G A;  5JJT A;  2KKN A;  2IE3 C;  3K7W C;  3DSD A;  1S8E A;  4UWQ A;  2BDX A;  1Z2W A;  4O4K A;  2CV9 A;  1KBP A;  2DFJ A;  4FBK A;  1T71 A;  3H60 A;  4JA7 A;  2XMO A;  4MOY A;  4OR9 A;  1NNW A;  1FJM A;  3THO B;  3E7B A;  2WDC A;  2ZBM A;  3H63 A;  3KBP A;  1WAO 1;  5HPE A;  4FBW A;  3P71 C;  4FCX A;  4MP0 A;  2IE4 C;  1IT6 A;  1S95 A;  4H2B A;  4HD0 A;  1HPU A;  4DT2 A;  3C9F A;  5B8I A;  2WDF A;  1W24 A;  4DSY A;  2Z06 A;  5EQV A;  3DSC A;  4I5L C;  1HP1 A;  4LAC C;  2QFP A;  2JOG A;  1TCO A;  2NYL C;  4LTY A;  3IB8 A;  2QJC A;  4NZV A;  3LL8 A;  3AV0 A;  5J28 A;  3AUZ A;  3FLO A;  4MOV A;  1WAR A;  5C1V A;  1AUI A;  2HYO A;  2NPP C;  1G5B A;  3EGG A;  2P6B A;  1OI8 A;  2HY1 A;  3ICF A;  2IAE C;  4IL1 A;  4ORA A;  4F0Z A;  5GTU A;  3H64 A;  1HO5 A;  2NYM C;  1UF3 A;  3RL5 A;  1U32 A;  3E7A A;  4Q7F A;  3THN A;  2WDE A;  4KKZ A;  3H69 A;  3T1I A;  2YEQ A;  2NXF A;  4DHL A;  4ORC A;  2Z1A A;  3RL4 A;  2O8G A;  3C5W C;  3H61 A;  4TUG A;  4G9J A;  3IVD A;  4V0X A;  1II7 A;  5IOH A;  2O8A A;  5F3W A;  2WDD A;  5DNY A;  4I5N C;  3DW8 C; 
#chains in the Genus database with same CATH homology
 2QFR A;  5JPE A;  1M63 A;  3TGH A;  3HVQ A;  3GVE A;  1QHW A;  1OID A;  4O24 A;  1USH A;  4KBP A;  3H68 A;  4ORB A;  4UT3 B;  2ZOA A;  3RL3 A;  4V0V A;  4V0W A;  2BCD A;  4ZX2 A;  4H2F A;  3H67 A;  3RQZ A;  1XM7 A;  2R17 A;  5JPF A;  4B2O A;  3H66 A;  1JK7 A;  3N5U A;  4UT3 A;  3FGA C;  1S3N A;  2DXL A;  2USH A;  4O43 A;  2ZO9 B;  3K7V C;  4YKE A;  1XZW A;  2BQ8 X;  4J6O A;  3PSO A;  4TUI A;  1QFC A;  4JA9 A;  4H1S A;  1S3L A;  3CK2 A;  1OIE A;  3QFK A;  4M0V A;  5INB A;  2A22 A;  2GJU A;  1T70 A;  3QFM A;  3IVE A;  4XPN A;  1Z2X A;  3D03 A;  3JYF A;  4ZVZ A;  4LU9 A;  4UT2 A;  3E0J A;  3ZU0 A;  3EGH A;  1V73 A;  2DXN A;  4H1Y P;  3ZTV A;  4FBQ A;  4H2I A;  2HYP A;  1UTE A;  2AHD A;  3IB7 A;  1MF8 A;  1S70 A;  1S3M A;  1SU1 A;  3PSN A;  4IYP C;  3V4Y A;  4WWL A;  3QFN A;  2Z72 A;  3QG5 C;  2Q8U A;  3QFO A;  4H2G A;  3H62 B;  2YVT A;  4O5G A;  5JJT A;  2KKN A;  2IE3 C;  3K7W C;  3DSD A;  1S8E A;  4UWQ A;  2BDX A;  1Z2W A;  4O4K A;  2CV9 A;  1KBP A;  2DFJ A;  4FBK A;  1T71 A;  3H60 A;  4JA7 A;  2XMO A;  4MOY A;  4OR9 A;  1NNW A;  1FJM A;  3THO B;  3E7B A;  2WDC A;  2ZBM A;  3H63 A;  3KBP A;  1WAO 1;  5HPE A;  4FBW A;  3P71 C;  4FCX A;  4MP0 A;  2IE4 C;  1IT6 A;  1S95 A;  4H2B A;  4HD0 A;  1HPU A;  4DT2 A;  3C9F A;  5B8I A;  2WDF A;  1W24 A;  4DSY A;  2Z06 A;  5EQV A;  3DSC A;  4I5L C;  1HP1 A;  4LAC C;  2QFP A;  2JOG A;  1TCO A;  2NYL C;  4LTY A;  3IB8 A;  2QJC A;  4NZV A;  3LL8 A;  3AV0 A;  5J28 A;  3AUZ A;  3FLO A;  4MOV A;  1WAR A;  5C1V A;  1AUI A;  2HYO A;  2NPP C;  1G5B A;  3EGG A;  2P6B A;  1OI8 A;  2HY1 A;  3ICF A;  2IAE C;  4IL1 A;  4ORA A;  4F0Z A;  5GTU A;  3H64 A;  1HO5 A;  2NYM C;  1UF3 A;  3RL5 A;  1U32 A;  3E7A A;  4Q7F A;  3THN A;  2WDE A;  4KKZ A;  3H69 A;  3T1I A;  2YEQ A;  2NXF A;  4DHL A;  4ORC A;  2Z1A A;  3RL4 A;  2O8G A;  3C5W C;  3H61 A;  4TUG A;  4G9J A;  3IVD A;  4V0X A;  1II7 A;  5IOH A;  2O8A A;  5F3W A;  2WDD A;  5DNY A;  4I5N C;  3DW8 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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