2AHDA

The apo structure of methanococcus jannaschii phosphodiesterase mj0936
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Phosphodiesterase MJ0936
publication title The Apo structure of Methanococcus jannaschii phosphodiesterase MJ0936
rcsb
source organism Methanocaldococcus jannaschii
total genus 51
structure length 165
sequence length 165
chains with identical sequence B, C, D
ec nomenclature ec 3.1.4.-:
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2ahdA00
2ZBMA 4MOYA 3THNA 2QFRA 1XM7A 3K7VC 2IE4C 4YKEA 3T1IA 4LU9A 1WARA 1S8EA 2HYPA 3FGAC 4TUIA 1TCOA 1SU1A 3QFMA 3RQZA 2GJUA 1OIEA 4O24A 2Z1AA 5HPEA 2Z72A 4LTYA 5B8IA 4Q7FA 3EGGA 1KBPA 2HY1A 3GVEA 3H60A 3H63A 3C5WC 4HD0A 4IYPC 1Z2XA 3E7AA 4DSYA 4H1YP 1T71A 2CV9A 3PSOA 4H2FA 4I5LC 4WWLA 4FCXA 2IAEC 3ZU0A 3H67A 3P71C 4KKZA 4ORCA 4B2OA 4NZVA 3IVDA 3H69A 5JJTA 4H2BA 5JPEA 4XPNA 2JOGA 4V0WA 5INBA 2A22A 1JK7A 2QFPA 3THOB 4DHLA 3HVQA 3H61A 4JA7A 1II7A 1Z2WA 4FBQA 5EQVA 5C1VA 5F3WA 3QFOA 2P6BA 4M0VA 4J6OA 1AUIA 2DFJA 5IOHA 1QFCA 4MOVA 5GTUA 2WDFA 4ORAA 2QJCA 3IB7A 2BCDA 3JYFA 1S3MA 4H2GA 1S3LA 3QG5C 1V73A 2USHA 3AV0A 1USHA 3IB8A 4UT2A 2KKNA 4H1SA 5JPFA 4KBPA 3DSDA 2O8GA 1HPUA 3N5UA 4TUGA 1S70A 4I5NC 2NYLC 2NYMC 4V0VA 4O5GA 2WDDA 1S95A 4DT2A 1UF3A 3TGHA 3C9FA 4V0XA 2WDCA 1QHWA 3EGHA 2AHDA 3RL4A 4O43A 4ZX2A 4MP0A 2O8AA 2R17A 4G9JA 2NPPC 3AUZA 4F0ZA 4O4KA 2Q8UA 3LL8A 4H2IA 3CK2A 4LACC 2XMOA 4FBWA 1G5BA 1WAO1 1W24A 1NNWA 3H68A 1M63A 1HP1A 1S3NA 4UT3B 4ZVZA 4IL1A 3E7BA 3DSCA 3H66A 1OI8A 3PSNA 4UWQA 1HO5A 1MF8A 2NXFA 3QFKA 1FJMA 2Z06A 4FBKA 1IT6A 3V4YA 5J28A 3K7WC 1T70A 4ORBA 3ZTVA 2BQ8X 3QFNA 2YVTA 3IVEA 4UT3A 2IE3C 3RL5A 3H62B 1UTEA 1XZWA 3KBPA 3H64A 4JA9A 2WDEA 3DW8C 2BDXA 1U32A 3RL3A 4OR9A 2HYOA 3ICFA 5DNYA 1OIDA
chains in the Genus database with same CATH superfamily
2ZBMA 4MOYA 3THNA 2QFRA 1XM7A 3K7VC 2IE4C 4YKEA 3T1IA 4LU9A 1WARA 1S8EA 2HYPA 3FGAC 4TUIA 1TCOA 1SU1A 3QFMA 2DXNA 3RQZA 2GJUA 1OIEA 4O24A 2Z1AA 5HPEA 2Z72A 4LTYA 5B8IA 4Q7FA 3EGGA 1KBPA 2HY1A 3GVEA 3H60A 3H63A 3C5WC 4HD0A 4IYPC 1Z2XA 3E7AA 4DSYA 4H1YP 1T71A 2CV9A 3PSOA 4H2FA 4I5LC 4WWLA 4FCXA 2IAEC 3ZU0A 3H67A 3P71C 4KKZA 4ORCA 4B2OA 4NZVA 3IVDA 3H69A 5JJTA 3E0JA 4H2BA 5JPEA 4XPNA 2JOGA 4V0WA 5INBA 2A22A 1JK7A 2QFPA 3THOB 4DHLA 3HVQA 3H61A 4JA7A 1II7A 1Z2WA 4FBQA 5EQVA 5C1VA 5F3WA 3QFOA 2P6BA 4M0VA 4J6OA 1AUIA 2DFJA 5IOHA 1QFCA 4MOVA 5GTUA 2WDFA 4ORAA 2QJCA 3IB7A 2BCDA 3JYFA 1S3MA 4H2GA 1S3LA 3QG5C 1V73A 2USHA 3AV0A 1USHA 3IB8A 4UT2A 3FLOA 3D03A 2KKNA 4H1SA 5JPFA 4KBPA 3DSDA 2O8GA 1HPUA 3N5UA 4TUGA 1S70A 4I5NC 2ZO9B 2NYLC 2NYMC 4V0VA 4O5GA 2WDDA 1S95A 4DT2A 1UF3A 3TGHA 3C9FA 4V0XA 2WDCA 1QHWA 3EGHA 2AHDA 3RL4A 4O43A 4ZX2A 4MP0A 2O8AA 2R17A 4G9JA 2NPPC 3AUZA 4F0ZA 4O4KA 2Q8UA 3LL8A 4H2IA 3CK2A 4LACC 2XMOA 2YEQA 4FBWA 1G5BA 1WAO1 1W24A 1NNWA 3H68A 1M63A 1HP1A 1S3NA 4UT3B 4ZVZA 4IL1A 3E7BA 3DSCA 3H66A 1OI8A 3PSNA 4UWQA 1HO5A 1MF8A 2NXFA 3QFKA 1FJMA 2Z06A 4FBKA 1IT6A 3V4YA 5J28A 3K7WC 1T70A 4ORBA 3ZTVA 2BQ8X 3QFNA 2YVTA 3IVEA 4UT3A 2IE3C 3RL5A 3H62B 1UTEA 1XZWA 2ZOAA 3KBPA 2DXLA 3H64A 4JA9A 2WDEA 3DW8C 2BDXA 1U32A 3RL3A 4OR9A 2HYOA 3ICFA 5DNYA 1OIDA
chains in the Genus database with same CATH topology
2ZBMA 4MOYA 3THNA 2QFRA 1XM7A 3K7VC 2IE4C 4YKEA 3T1IA 4LU9A 1WARA 1S8EA 2HYPA 3FGAC 4TUIA 1TCOA 1SU1A 3QFMA 2DXNA 3RQZA 2GJUA 1OIEA 4O24A 2Z1AA 5HPEA 2Z72A 4LTYA 5B8IA 4Q7FA 3EGGA 1KBPA 2HY1A 3GVEA 3H60A 3H63A 3C5WC 4HD0A 4IYPC 1Z2XA 3E7AA 4DSYA 4H1YP 1T71A 2CV9A 3PSOA 4H2FA 4I5LC 4WWLA 4FCXA 2IAEC 3ZU0A 3H67A 3P71C 4KKZA 4ORCA 4B2OA 4NZVA 3IVDA 3H69A 5JJTA 3E0JA 4H2BA 5JPEA 4XPNA 2JOGA 4V0WA 5INBA 2A22A 1JK7A 2QFPA 3THOB 4DHLA 3HVQA 3H61A 4JA7A 1II7A 1Z2WA 4FBQA 5EQVA 5C1VA 5F3WA 3QFOA 2P6BA 4M0VA 4J6OA 1AUIA 2DFJA 5IOHA 1QFCA 4MOVA 5GTUA 2WDFA 4ORAA 2QJCA 3IB7A 2BCDA 3JYFA 1S3MA 4H2GA 1S3LA 3QG5C 1V73A 2USHA 3AV0A 1USHA 3IB8A 4UT2A 3FLOA 3D03A 2KKNA 4H1SA 5JPFA 4KBPA 3DSDA 2O8GA 1HPUA 3N5UA 4TUGA 1S70A 4I5NC 2ZO9B 2NYLC 2NYMC 4V0VA 4O5GA 2WDDA 1S95A 4DT2A 1UF3A 3TGHA 3C9FA 4V0XA 2WDCA 1QHWA 3EGHA 2AHDA 3RL4A 4O43A 4ZX2A 4MP0A 2O8AA 2R17A 4G9JA 2NPPC 3AUZA 4F0ZA 4O4KA 2Q8UA 3LL8A 4H2IA 3CK2A 4LACC 2XMOA 2YEQA 4FBWA 1G5BA 1WAO1 1W24A 1NNWA 3H68A 1M63A 1HP1A 1S3NA 4UT3B 4ZVZA 4IL1A 3E7BA 3DSCA 3H66A 1OI8A 3PSNA 4UWQA 1HO5A 1MF8A 2NXFA 3QFKA 1FJMA 2Z06A 4FBKA 1IT6A 3V4YA 5J28A 3K7WC 1T70A 4ORBA 3ZTVA 2BQ8X 3QFNA 2YVTA 3IVEA 4UT3A 2IE3C 3RL5A 3H62B 1UTEA 1XZWA 2ZOAA 3KBPA 2DXLA 3H64A 4JA9A 2WDEA 3DW8C 2BDXA 1U32A 3RL3A 4OR9A 2HYOA 3ICFA 5DNYA 1OIDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZBM A;  4MOY A;  3THN A;  2QFR A;  1XM7 A;  3K7V C;  2IE4 C;  4YKE A;  3T1I A;  4LU9 A;  1WAR A;  1S8E A;  2HYP A;  3FGA C;  4TUI A;  1TCO A;  1SU1 A;  3QFM A;  3RQZ A;  2GJU A;  1OIE A;  4O24 A;  2Z1A A;  5HPE A;  2Z72 A;  4LTY A;  5B8I A;  4Q7F A;  3EGG A;  1KBP A;  2HY1 A;  3GVE A;  3H60 A;  3H63 A;  3C5W C;  4HD0 A;  4IYP C;  1Z2X A;  3E7A A;  4DSY A;  4H1Y P;  1T71 A;  2CV9 A;  3PSO A;  4H2F A;  4I5L C;  4WWL A;  4FCX A;  2IAE C;  3ZU0 A;  3H67 A;  3P71 C;  4KKZ A;  4ORC A;  4B2O A;  4NZV A;  3IVD A;  3H69 A;  5JJT A;  4H2B A;  5JPE A;  4XPN A;  2JOG A;  4V0W A;  5INB A;  2A22 A;  1JK7 A;  2QFP A;  3THO B;  4DHL A;  3HVQ A;  3H61 A;  4JA7 A;  1II7 A;  1Z2W A;  4FBQ A;  5EQV A;  5C1V A;  5F3W A;  3QFO A;  2P6B A;  4M0V A;  4J6O A;  1AUI A;  2DFJ A;  5IOH A;  1QFC A;  4MOV A;  5GTU A;  2WDF A;  4ORA A;  2QJC A;  3IB7 A;  2BCD A;  3JYF A;  1S3M A;  4H2G A;  1S3L A;  3QG5 C;  1V73 A;  2USH A;  3AV0 A;  1USH A;  3IB8 A;  4UT2 A;  2KKN A;  4H1S A;  5JPF A;  4KBP A;  3DSD A;  2O8G A;  1HPU A;  3N5U A;  4TUG A;  1S70 A;  4I5N C;  2NYL C;  2NYM C;  4V0V A;  4O5G A;  2WDD A;  1S95 A;  4DT2 A;  1UF3 A;  3TGH A;  3C9F A;  4V0X A;  2WDC A;  1QHW A;  3EGH A;  2AHD A;  3RL4 A;  4O43 A;  4ZX2 A;  4MP0 A;  2O8A A;  2R17 A;  4G9J A;  2NPP C;  3AUZ A;  4F0Z A;  4O4K A;  2Q8U A;  3LL8 A;  4H2I A;  3CK2 A;  4LAC C;  2XMO A;  4FBW A;  1G5B A;  1WAO 1;  1W24 A;  1NNW A;  3H68 A;  1M63 A;  1HP1 A;  1S3N A;  4UT3 B;  4ZVZ A;  4IL1 A;  3E7B A;  3DSC A;  3H66 A;  1OI8 A;  3PSN A;  4UWQ A;  1HO5 A;  1MF8 A;  2NXF A;  3QFK A;  1FJM A;  2Z06 A;  4FBK A;  1IT6 A;  3V4Y A;  5J28 A;  3K7W C;  1T70 A;  4ORB A;  3ZTV A;  2BQ8 X;  3QFN A;  2YVT A;  3IVE A;  4UT3 A;  2IE3 C;  3RL5 A;  3H62 B;  1UTE A;  1XZW A;  3KBP A;  3H64 A;  4JA9 A;  2WDE A;  3DW8 C;  2BDX A;  1U32 A;  3RL3 A;  4OR9 A;  2HYO A;  3ICF A;  5DNY A;  1OID A; 
#chains in the Genus database with same CATH topology
 2ZBM A;  4MOY A;  3THN A;  2QFR A;  1XM7 A;  3K7V C;  2IE4 C;  4YKE A;  3T1I A;  4LU9 A;  1WAR A;  1S8E A;  2HYP A;  3FGA C;  4TUI A;  1TCO A;  1SU1 A;  3QFM A;  2DXN A;  3RQZ A;  2GJU A;  1OIE A;  4O24 A;  2Z1A A;  5HPE A;  2Z72 A;  4LTY A;  5B8I A;  4Q7F A;  3EGG A;  1KBP A;  2HY1 A;  3GVE A;  3H60 A;  3H63 A;  3C5W C;  4HD0 A;  4IYP C;  1Z2X A;  3E7A A;  4DSY A;  4H1Y P;  1T71 A;  2CV9 A;  3PSO A;  4H2F A;  4I5L C;  4WWL A;  4FCX A;  2IAE C;  3ZU0 A;  3H67 A;  3P71 C;  4KKZ A;  4ORC A;  4B2O A;  4NZV A;  3IVD A;  3H69 A;  5JJT A;  3E0J A;  4H2B A;  5JPE A;  4XPN A;  2JOG A;  4V0W A;  5INB A;  2A22 A;  1JK7 A;  2QFP A;  3THO B;  4DHL A;  3HVQ A;  3H61 A;  4JA7 A;  1II7 A;  1Z2W A;  4FBQ A;  5EQV A;  5C1V A;  5F3W A;  3QFO A;  2P6B A;  4M0V A;  4J6O A;  1AUI A;  2DFJ A;  5IOH A;  1QFC A;  4MOV A;  5GTU A;  2WDF A;  4ORA A;  2QJC A;  3IB7 A;  2BCD A;  3JYF A;  1S3M A;  4H2G A;  1S3L A;  3QG5 C;  1V73 A;  2USH A;  3AV0 A;  1USH A;  3IB8 A;  4UT2 A;  3FLO A;  3D03 A;  2KKN A;  4H1S A;  5JPF A;  4KBP A;  3DSD A;  2O8G A;  1HPU A;  3N5U A;  4TUG A;  1S70 A;  4I5N C;  2ZO9 B;  2NYL C;  2NYM C;  4V0V A;  4O5G A;  2WDD A;  1S95 A;  4DT2 A;  1UF3 A;  3TGH A;  3C9F A;  4V0X A;  2WDC A;  1QHW A;  3EGH A;  2AHD A;  3RL4 A;  4O43 A;  4ZX2 A;  4MP0 A;  2O8A A;  2R17 A;  4G9J A;  2NPP C;  3AUZ A;  4F0Z A;  4O4K A;  2Q8U A;  3LL8 A;  4H2I A;  3CK2 A;  4LAC C;  2XMO A;  2YEQ A;  4FBW A;  1G5B A;  1WAO 1;  1W24 A;  1NNW A;  3H68 A;  1M63 A;  1HP1 A;  1S3N A;  4UT3 B;  4ZVZ A;  4IL1 A;  3E7B A;  3DSC A;  3H66 A;  1OI8 A;  3PSN A;  4UWQ A;  1HO5 A;  1MF8 A;  2NXF A;  3QFK A;  1FJM A;  2Z06 A;  4FBK A;  1IT6 A;  3V4Y A;  5J28 A;  3K7W C;  1T70 A;  4ORB A;  3ZTV A;  2BQ8 X;  3QFN A;  2YVT A;  3IVE A;  4UT3 A;  2IE3 C;  3RL5 A;  3H62 B;  1UTE A;  1XZW A;  2ZOA A;  3KBP A;  2DXL A;  3H64 A;  4JA9 A;  2WDE A;  3DW8 C;  2BDX A;  1U32 A;  3RL3 A;  4OR9 A;  2HYO A;  3ICF A;  5DNY A;  1OID A; 
#chains in the Genus database with same CATH homology
 2ZBM A;  4MOY A;  3THN A;  2QFR A;  1XM7 A;  3K7V C;  2IE4 C;  4YKE A;  3T1I A;  4LU9 A;  1WAR A;  1S8E A;  2HYP A;  3FGA C;  4TUI A;  1TCO A;  1SU1 A;  3QFM A;  2DXN A;  3RQZ A;  2GJU A;  1OIE A;  4O24 A;  2Z1A A;  5HPE A;  2Z72 A;  4LTY A;  5B8I A;  4Q7F A;  3EGG A;  1KBP A;  2HY1 A;  3GVE A;  3H60 A;  3H63 A;  3C5W C;  4HD0 A;  4IYP C;  1Z2X A;  3E7A A;  4DSY A;  4H1Y P;  1T71 A;  2CV9 A;  3PSO A;  4H2F A;  4I5L C;  4WWL A;  4FCX A;  2IAE C;  3ZU0 A;  3H67 A;  3P71 C;  4KKZ A;  4ORC A;  4B2O A;  4NZV A;  3IVD A;  3H69 A;  5JJT A;  3E0J A;  4H2B A;  5JPE A;  4XPN A;  2JOG A;  4V0W A;  5INB A;  2A22 A;  1JK7 A;  2QFP A;  3THO B;  4DHL A;  3HVQ A;  3H61 A;  4JA7 A;  1II7 A;  1Z2W A;  4FBQ A;  5EQV A;  5C1V A;  5F3W A;  3QFO A;  2P6B A;  4M0V A;  4J6O A;  1AUI A;  2DFJ A;  5IOH A;  1QFC A;  4MOV A;  5GTU A;  2WDF A;  4ORA A;  2QJC A;  3IB7 A;  2BCD A;  3JYF A;  1S3M A;  4H2G A;  1S3L A;  3QG5 C;  1V73 A;  2USH A;  3AV0 A;  1USH A;  3IB8 A;  4UT2 A;  3FLO A;  3D03 A;  2KKN A;  4H1S A;  5JPF A;  4KBP A;  3DSD A;  2O8G A;  1HPU A;  3N5U A;  4TUG A;  1S70 A;  4I5N C;  2ZO9 B;  2NYL C;  2NYM C;  4V0V A;  4O5G A;  2WDD A;  1S95 A;  4DT2 A;  1UF3 A;  3TGH A;  3C9F A;  4V0X A;  2WDC A;  1QHW A;  3EGH A;  2AHD A;  3RL4 A;  4O43 A;  4ZX2 A;  4MP0 A;  2O8A A;  2R17 A;  4G9J A;  2NPP C;  3AUZ A;  4F0Z A;  4O4K A;  2Q8U A;  3LL8 A;  4H2I A;  3CK2 A;  4LAC C;  2XMO A;  2YEQ A;  4FBW A;  1G5B A;  1WAO 1;  1W24 A;  1NNW A;  3H68 A;  1M63 A;  1HP1 A;  1S3N A;  4UT3 B;  4ZVZ A;  4IL1 A;  3E7B A;  3DSC A;  3H66 A;  1OI8 A;  3PSN A;  4UWQ A;  1HO5 A;  1MF8 A;  2NXF A;  3QFK A;  1FJM A;  2Z06 A;  4FBK A;  1IT6 A;  3V4Y A;  5J28 A;  3K7W C;  1T70 A;  4ORB A;  3ZTV A;  2BQ8 X;  3QFN A;  2YVT A;  3IVE A;  4UT3 A;  2IE3 C;  3RL5 A;  3H62 B;  1UTE A;  1XZW A;  2ZOA A;  3KBP A;  2DXL A;  3H64 A;  4JA9 A;  2WDE A;  3DW8 C;  2BDX A;  1U32 A;  3RL3 A;  4OR9 A;  2HYO A;  3ICF A;  5DNY A;  1OID A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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