2AHDA

The apo structure of methanococcus jannaschii phosphodiesterase mj0936
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
b'MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Apo structure of Methanococcus jannaschii phosphodiesterase MJ0936
rcsb
molecule keywords Phosphodiesterase MJ0936
source organism Methanocaldococcus jannaschii
molecule tags Hydrolase
total genus 51
structure length 165
sequence length 165
chains with identical sequence B, C, D
ec nomenclature ec 3.1.4.-:
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2ahdA00
3H64A 1M63A 3QFKA 3QFNA 4ORCA 2Z1AA 3AUZA 2USHA 4UT2A 4FBQA 2XMOA 1S95A 2GJUA 4KBPA 2JOGA 1S3NA 3CK2A 2IAEC 4I5NC 3H60A 4LACC 1NNWA 5GTUA 2WDCA 4UT3B 3ICFA 3PSOA 1S3LA 1XZWA 3AV0A 4M0VA 4YKEA 5F3WA 3PSNA 4UWQA 4TUGA 2Z06A 3RQZA 3N5UA 4FCXA 4V0VA 2IE4C 2ZBMA 1UTEA 4B2OA 5JJTA 1QFCA 2QFRA 2Q8UA 3IVDA 1IT6A 4V0WA 1T71A 3IB7A 4JA7A 5C1VA 4NZVA 3RL5A 1USHA 5IOHA 1OIDA 1TCOA 2HYPA 1S70A 4V0XA 3THNA 3QFMA 3HVQA 2WDDA 1HO5A 3DW8C 4O24A 2BCDA 3GVEA 3ZU0A 4LTYA 1HPUA 4H2BA 1S8EA 2AHDA 4DHLA 5INBA 4MP0A 4LU9A 1XM7A 3EGGA 3P71C 4HD0A 2QFPA 1WAO1 2P6BA 1QHWA 4IL1A 4ZX2A 1Z2WA 2NXFA 4IYPC 3KBPA 3IVEA 4G9JA 4ORAA 5B8IA 2HYOA 2CV9A 3K7WC 3E7AA 2HY1A 2NPPC 3JYFA 4H1SA 4KKZA 1V73A 3E7BA 3H69A 4FBWA 4OR9A 4H1YP 4WWLA 3QG5C 5HPEA 5DNYA 3LL8A 2QJCA 2IE3C 2Z72A 1AUIA 1FJMA 5EQVA 1OIEA 3RL3A 1JK7A 1S3MA 4JA9A 4I5LC 1T70A 2BDXA 4O5GA 4DT2A 3C9FA 2DFJA 4FBKA 1Z2XA 4ORBA 3IB8A 3THOB 1UF3A 2KKNA 5JPEA 3H61A 3RL4A 4O4KA 5JPFA 3EGHA 3V4YA 2O8AA 3H63A 2R17A 1HP1A 4O43A 3TGHA 4J6OA 4TUIA 2O8GA 3H68A 4H2FA 3K7VC 3FGAC 1WARA 1KBPA 4ZVZA 1OI8A 4Q7FA 4H2GA 1U32A 4F0ZA 1MF8A 3ZTVA 3T1IA 3C5WC 3DSCA 1W24A 4DSYA 1SU1A 3DSDA 2WDFA 4MOYA 4UT3A 2BQ8X 3H67A 1II7A 4H2IA 4MOVA 2WDEA 5J28A 2A22A 2NYLC 3QFOA 1G5BA 2NYMC 3H62B 4XPNA 3H66A 2YVTA
chains in the Genus database with same CATH superfamily
3H64A 1M63A 3QFKA 3QFNA 4ORCA 2Z1AA 3AUZA 2USHA 4UT2A 4FBQA 2XMOA 1S95A 2GJUA 4KBPA 2JOGA 1S3NA 3CK2A 2IAEC 4I5NC 3H60A 4LACC 1NNWA 5GTUA 2WDCA 4UT3B 3ICFA 3PSOA 1S3LA 1XZWA 3AV0A 4M0VA 4YKEA 5F3WA 3PSNA 4UWQA 4TUGA 2Z06A 3RQZA 3N5UA 4FCXA 4V0VA 2IE4C 2ZBMA 1UTEA 4B2OA 5JJTA 1QFCA 2QFRA 2ZOAA 3E0JA 2Q8UA 3IVDA 1IT6A 4V0WA 1T71A 3IB7A 4JA7A 5C1VA 4NZVA 3RL5A 1USHA 2YEQA 5IOHA 1OIDA 1TCOA 2HYPA 1S70A 4V0XA 3THNA 3QFMA 3HVQA 2WDDA 3DW8C 4O24A 2BCDA 3GVEA 3ZU0A 4LTYA 1HPUA 4H2BA 1S8EA 2AHDA 4DHLA 5INBA 4MP0A 4LU9A 1XM7A 3EGGA 3P71C 4HD0A 2QFPA 1WAO1 2P6BA 1QHWA 4IL1A 4ZX2A 1Z2WA 2NXFA 4IYPC 3KBPA 3IVEA 4G9JA 4ORAA 5B8IA 2HYOA 2CV9A 2ZO9B 3K7WC 3E7AA 2HY1A 2NPPC 3JYFA 4H1SA 4KKZA 1V73A 3E7BA 3H69A 4FBWA 4OR9A 4H1YP 4WWLA 3QG5C 5HPEA 5DNYA 3LL8A 2QJCA 2IE3C 2Z72A 2YVTA 1AUIA 1FJMA 5EQVA 3FLOA 1OIEA 2DXLA 1JK7A 3RL3A 1S3MA 4JA9A 4I5LC 1T70A 2BDXA 4O5GA 4DT2A 3C9FA 2DFJA 4FBKA 1Z2XA 4ORBA 3IB8A 3THOB 1UF3A 2KKNA 5JPEA 3H61A 3RL4A 4O4KA 5JPFA 3D03A 3EGHA 3V4YA 2O8AA 3H63A 2R17A 1HP1A 4O43A 3TGHA 4J6OA 4TUIA 2O8GA 3H68A 4H2FA 3K7VC 3FGAC 1WARA 1KBPA 2DXNA 4ZVZA 1OI8A 4Q7FA 4H2GA 1U32A 4F0ZA 1MF8A 3ZTVA 3T1IA 3C5WC 3DSCA 1W24A 4DSYA 1SU1A 3DSDA 2WDFA 4MOYA 4UT3A 2BQ8X 3H67A 1II7A 4H2IA 4MOVA 2WDEA 5J28A 2A22A 2NYLC 3QFOA 1G5BA 2NYMC 3H62B 4XPNA 3H66A 1HO5A
chains in the Genus database with same CATH topology
3H64A 1M63A 3QFKA 3QFNA 4ORCA 2Z1AA 3AUZA 2USHA 4UT2A 4FBQA 2XMOA 1S95A 2GJUA 4KBPA 2JOGA 1S3NA 3CK2A 2IAEC 4I5NC 3H60A 4LACC 1NNWA 5GTUA 2WDCA 4UT3B 3ICFA 3PSOA 1S3LA 1XZWA 3AV0A 4M0VA 4YKEA 5F3WA 3PSNA 4UWQA 4TUGA 2Z06A 3RQZA 3N5UA 4FCXA 4V0VA 2IE4C 2ZBMA 1UTEA 4B2OA 5JJTA 1QFCA 2QFRA 2ZOAA 3E0JA 2Q8UA 3IVDA 1IT6A 4V0WA 1T71A 3IB7A 4JA7A 5C1VA 4NZVA 3RL5A 1USHA 2YEQA 5IOHA 1OIDA 1TCOA 2HYPA 1S70A 4V0XA 3THNA 3QFMA 3HVQA 2WDDA 3DW8C 4O24A 2BCDA 3GVEA 3ZU0A 4LTYA 1HPUA 4H2BA 1S8EA 2AHDA 4DHLA 5INBA 4MP0A 4LU9A 1XM7A 3EGGA 3P71C 4HD0A 2QFPA 1WAO1 2P6BA 1QHWA 4IL1A 4ZX2A 1Z2WA 2NXFA 4IYPC 3KBPA 3IVEA 4G9JA 4ORAA 5B8IA 2HYOA 2CV9A 2ZO9B 3K7WC 3E7AA 2HY1A 2NPPC 3JYFA 4H1SA 4KKZA 1V73A 3E7BA 3H69A 4FBWA 4OR9A 4H1YP 4WWLA 3QG5C 5HPEA 5DNYA 3LL8A 2QJCA 2IE3C 2Z72A 2YVTA 1AUIA 1FJMA 5EQVA 3FLOA 1OIEA 2DXLA 1JK7A 3RL3A 1S3MA 4JA9A 4I5LC 1T70A 2BDXA 4O5GA 4DT2A 3C9FA 2DFJA 4FBKA 1Z2XA 4ORBA 3IB8A 3THOB 1UF3A 2KKNA 5JPEA 3H61A 3RL4A 4O4KA 5JPFA 3D03A 3EGHA 3V4YA 2O8AA 3H63A 2R17A 1HP1A 4O43A 3TGHA 4J6OA 4TUIA 2O8GA 3H68A 4H2FA 3K7VC 3FGAC 1WARA 1KBPA 2DXNA 4ZVZA 1OI8A 4Q7FA 4H2GA 1U32A 4F0ZA 1MF8A 3ZTVA 3T1IA 3C5WC 3DSCA 1W24A 4DSYA 1SU1A 3DSDA 2WDFA 4MOYA 4UT3A 2BQ8X 3H67A 1II7A 4H2IA 4MOVA 2WDEA 5J28A 2A22A 2NYLC 3QFOA 1G5BA 2NYMC 3H62B 4XPNA 3H66A 1HO5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H64 A;  1M63 A;  3QFK A;  3QFN A;  4ORC A;  2Z1A A;  3AUZ A;  2USH A;  4UT2 A;  4FBQ A;  2XMO A;  1S95 A;  2GJU A;  4KBP A;  2JOG A;  1S3N A;  3CK2 A;  2IAE C;  4I5N C;  3H60 A;  4LAC C;  1NNW A;  5GTU A;  2WDC A;  4UT3 B;  3ICF A;  3PSO A;  1S3L A;  1XZW A;  3AV0 A;  4M0V A;  4YKE A;  5F3W A;  3PSN A;  4UWQ A;  4TUG A;  2Z06 A;  3RQZ A;  3N5U A;  4FCX A;  4V0V A;  2IE4 C;  2ZBM A;  1UTE A;  4B2O A;  5JJT A;  1QFC A;  2QFR A;  2Q8U A;  3IVD A;  1IT6 A;  4V0W A;  1T71 A;  3IB7 A;  4JA7 A;  5C1V A;  4NZV A;  3RL5 A;  1USH A;  5IOH A;  1OID A;  1TCO A;  2HYP A;  1S70 A;  4V0X A;  3THN A;  3QFM A;  3HVQ A;  2WDD A;  1HO5 A;  3DW8 C;  4O24 A;  2BCD A;  3GVE A;  3ZU0 A;  4LTY A;  1HPU A;  4H2B A;  1S8E A;  2AHD A;  4DHL A;  5INB A;  4MP0 A;  4LU9 A;  1XM7 A;  3EGG A;  3P71 C;  4HD0 A;  2QFP A;  1WAO 1;  2P6B A;  1QHW A;  4IL1 A;  4ZX2 A;  1Z2W A;  2NXF A;  4IYP C;  3KBP A;  3IVE A;  4G9J A;  4ORA A;  5B8I A;  2HYO A;  2CV9 A;  3K7W C;  3E7A A;  2HY1 A;  2NPP C;  3JYF A;  4H1S A;  4KKZ A;  1V73 A;  3E7B A;  3H69 A;  4FBW A;  4OR9 A;  4H1Y P;  4WWL A;  3QG5 C;  5HPE A;  5DNY A;  3LL8 A;  2QJC A;  2IE3 C;  2Z72 A;  1AUI A;  1FJM A;  5EQV A;  1OIE A;  3RL3 A;  1JK7 A;  1S3M A;  4JA9 A;  4I5L C;  1T70 A;  2BDX A;  4O5G A;  4DT2 A;  3C9F A;  2DFJ A;  4FBK A;  1Z2X A;  4ORB A;  3IB8 A;  3THO B;  1UF3 A;  2KKN A;  5JPE A;  3H61 A;  3RL4 A;  4O4K A;  5JPF A;  3EGH A;  3V4Y A;  2O8A A;  3H63 A;  2R17 A;  1HP1 A;  4O43 A;  3TGH A;  4J6O A;  4TUI A;  2O8G A;  3H68 A;  4H2F A;  3K7V C;  3FGA C;  1WAR A;  1KBP A;  4ZVZ A;  1OI8 A;  4Q7F A;  4H2G A;  1U32 A;  4F0Z A;  1MF8 A;  3ZTV A;  3T1I A;  3C5W C;  3DSC A;  1W24 A;  4DSY A;  1SU1 A;  3DSD A;  2WDF A;  4MOY A;  4UT3 A;  2BQ8 X;  3H67 A;  1II7 A;  4H2I A;  4MOV A;  2WDE A;  5J28 A;  2A22 A;  2NYL C;  3QFO A;  1G5B A;  2NYM C;  3H62 B;  4XPN A;  3H66 A;  2YVT A; 
#chains in the Genus database with same CATH topology
 3H64 A;  1M63 A;  3QFK A;  3QFN A;  4ORC A;  2Z1A A;  3AUZ A;  2USH A;  4UT2 A;  4FBQ A;  2XMO A;  1S95 A;  2GJU A;  4KBP A;  2JOG A;  1S3N A;  3CK2 A;  2IAE C;  4I5N C;  3H60 A;  4LAC C;  1NNW A;  5GTU A;  2WDC A;  4UT3 B;  3ICF A;  3PSO A;  1S3L A;  1XZW A;  3AV0 A;  4M0V A;  4YKE A;  5F3W A;  3PSN A;  4UWQ A;  4TUG A;  2Z06 A;  3RQZ A;  3N5U A;  4FCX A;  4V0V A;  2IE4 C;  2ZBM A;  1UTE A;  4B2O A;  5JJT A;  1QFC A;  2QFR A;  2ZOA A;  3E0J A;  2Q8U A;  3IVD A;  1IT6 A;  4V0W A;  1T71 A;  3IB7 A;  4JA7 A;  5C1V A;  4NZV A;  3RL5 A;  1USH A;  2YEQ A;  5IOH A;  1OID A;  1TCO A;  2HYP A;  1S70 A;  4V0X A;  3THN A;  3QFM A;  3HVQ A;  2WDD A;  3DW8 C;  4O24 A;  2BCD A;  3GVE A;  3ZU0 A;  4LTY A;  1HPU A;  4H2B A;  1S8E A;  2AHD A;  4DHL A;  5INB A;  4MP0 A;  4LU9 A;  1XM7 A;  3EGG A;  3P71 C;  4HD0 A;  2QFP A;  1WAO 1;  2P6B A;  1QHW A;  4IL1 A;  4ZX2 A;  1Z2W A;  2NXF A;  4IYP C;  3KBP A;  3IVE A;  4G9J A;  4ORA A;  5B8I A;  2HYO A;  2CV9 A;  2ZO9 B;  3K7W C;  3E7A A;  2HY1 A;  2NPP C;  3JYF A;  4H1S A;  4KKZ A;  1V73 A;  3E7B A;  3H69 A;  4FBW A;  4OR9 A;  4H1Y P;  4WWL A;  3QG5 C;  5HPE A;  5DNY A;  3LL8 A;  2QJC A;  2IE3 C;  2Z72 A;  2YVT A;  1AUI A;  1FJM A;  5EQV A;  3FLO A;  1OIE A;  2DXL A;  1JK7 A;  3RL3 A;  1S3M A;  4JA9 A;  4I5L C;  1T70 A;  2BDX A;  4O5G A;  4DT2 A;  3C9F A;  2DFJ A;  4FBK A;  1Z2X A;  4ORB A;  3IB8 A;  3THO B;  1UF3 A;  2KKN A;  5JPE A;  3H61 A;  3RL4 A;  4O4K A;  5JPF A;  3D03 A;  3EGH A;  3V4Y A;  2O8A A;  3H63 A;  2R17 A;  1HP1 A;  4O43 A;  3TGH A;  4J6O A;  4TUI A;  2O8G A;  3H68 A;  4H2F A;  3K7V C;  3FGA C;  1WAR A;  1KBP A;  2DXN A;  4ZVZ A;  1OI8 A;  4Q7F A;  4H2G A;  1U32 A;  4F0Z A;  1MF8 A;  3ZTV A;  3T1I A;  3C5W C;  3DSC A;  1W24 A;  4DSY A;  1SU1 A;  3DSD A;  2WDF A;  4MOY A;  4UT3 A;  2BQ8 X;  3H67 A;  1II7 A;  4H2I A;  4MOV A;  2WDE A;  5J28 A;  2A22 A;  2NYL C;  3QFO A;  1G5B A;  2NYM C;  3H62 B;  4XPN A;  3H66 A;  1HO5 A; 
#chains in the Genus database with same CATH homology
 3H64 A;  1M63 A;  3QFK A;  3QFN A;  4ORC A;  2Z1A A;  3AUZ A;  2USH A;  4UT2 A;  4FBQ A;  2XMO A;  1S95 A;  2GJU A;  4KBP A;  2JOG A;  1S3N A;  3CK2 A;  2IAE C;  4I5N C;  3H60 A;  4LAC C;  1NNW A;  5GTU A;  2WDC A;  4UT3 B;  3ICF A;  3PSO A;  1S3L A;  1XZW A;  3AV0 A;  4M0V A;  4YKE A;  5F3W A;  3PSN A;  4UWQ A;  4TUG A;  2Z06 A;  3RQZ A;  3N5U A;  4FCX A;  4V0V A;  2IE4 C;  2ZBM A;  1UTE A;  4B2O A;  5JJT A;  1QFC A;  2QFR A;  2ZOA A;  3E0J A;  2Q8U A;  3IVD A;  1IT6 A;  4V0W A;  1T71 A;  3IB7 A;  4JA7 A;  5C1V A;  4NZV A;  3RL5 A;  1USH A;  2YEQ A;  5IOH A;  1OID A;  1TCO A;  2HYP A;  1S70 A;  4V0X A;  3THN A;  3QFM A;  3HVQ A;  2WDD A;  3DW8 C;  4O24 A;  2BCD A;  3GVE A;  3ZU0 A;  4LTY A;  1HPU A;  4H2B A;  1S8E A;  2AHD A;  4DHL A;  5INB A;  4MP0 A;  4LU9 A;  1XM7 A;  3EGG A;  3P71 C;  4HD0 A;  2QFP A;  1WAO 1;  2P6B A;  1QHW A;  4IL1 A;  4ZX2 A;  1Z2W A;  2NXF A;  4IYP C;  3KBP A;  3IVE A;  4G9J A;  4ORA A;  5B8I A;  2HYO A;  2CV9 A;  2ZO9 B;  3K7W C;  3E7A A;  2HY1 A;  2NPP C;  3JYF A;  4H1S A;  4KKZ A;  1V73 A;  3E7B A;  3H69 A;  4FBW A;  4OR9 A;  4H1Y P;  4WWL A;  3QG5 C;  5HPE A;  5DNY A;  3LL8 A;  2QJC A;  2IE3 C;  2Z72 A;  2YVT A;  1AUI A;  1FJM A;  5EQV A;  3FLO A;  1OIE A;  2DXL A;  1JK7 A;  3RL3 A;  1S3M A;  4JA9 A;  4I5L C;  1T70 A;  2BDX A;  4O5G A;  4DT2 A;  3C9F A;  2DFJ A;  4FBK A;  1Z2X A;  4ORB A;  3IB8 A;  3THO B;  1UF3 A;  2KKN A;  5JPE A;  3H61 A;  3RL4 A;  4O4K A;  5JPF A;  3D03 A;  3EGH A;  3V4Y A;  2O8A A;  3H63 A;  2R17 A;  1HP1 A;  4O43 A;  3TGH A;  4J6O A;  4TUI A;  2O8G A;  3H68 A;  4H2F A;  3K7V C;  3FGA C;  1WAR A;  1KBP A;  2DXN A;  4ZVZ A;  1OI8 A;  4Q7F A;  4H2G A;  1U32 A;  4F0Z A;  1MF8 A;  3ZTV A;  3T1I A;  3C5W C;  3DSC A;  1W24 A;  4DSY A;  1SU1 A;  3DSD A;  2WDF A;  4MOY A;  4UT3 A;  2BQ8 X;  3H67 A;  1II7 A;  4H2I A;  4MOV A;  2WDE A;  5J28 A;  2A22 A;  2NYL C;  3QFO A;  1G5B A;  2NYM C;  3H62 B;  4XPN A;  3H66 A;  1HO5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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