2AHDA

The apo structure of methanococcus jannaschii phosphodiesterase mj0936
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Methanocaldococcus jannaschii
publication title The Apo structure of Methanococcus jannaschii phosphodiesterase MJ0936
rcsb
molecule keywords Phosphodiesterase MJ0936
total genus 51
structure length 165
sequence length 165
chains with identical sequence B, C, D
ec nomenclature ec 3.1.4.-:
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2ahdA00
1FJMA 2IE4C 2YVTA 3QG5C 3PSOA 2ZBMA 3RQZA 1II7A 4J6OA 5HPEA 1W24A 2HYPA 3E7BA 1MF8A 2Z72A 1S3LA 4H1SA 3QFNA 4HD0A 4MOYA 4XPNA 2Z1AA 4WWLA 1HPUA 1G5BA 1OIDA 1NNWA 2AHDA 4DSYA 3C9FA 4ORAA 2NPPC 2NYMC 2USHA 5J28A 4H2BA 1TCOA 5C1VA 4DHLA 2R17A 1S3NA 4G9JA 3DW8C 1SU1A 3IB7A 4H2GA 3RL4A 4O5GA 1WARA 1USHA 1HO5A 3H69A 2Q8UA 1S8EA 2P6BA 4FBKA 4F0ZA 2WDDA 4V0WA 3H62B 3AV0A 4MOVA 4FBQA 3ZU0A 1OIEA 2A22A 4B2OA 3DSCA 3IB8A 2XMOA 2WDFA 4MP0A 4ZVZA 2KKNA 5B8IA 1S70A 3V4YA 4H2IA 4DT2A 2JOGA 2O8GA 5F3WA 1U32A 1Z2XA 1OI8A 2WDCA 3QFOA 3FGAC 3P71C 4FCXA 1QFCA 2IE3C 1IT6A 4Q7FA 3EGHA 4V0VA 2NXFA 2BDXA 2QFRA 4YKEA 2QFPA 1HP1A 4LACC 3E7AA 4O43A 1UTEA 2O8AA 4KBPA 4UT3B 3JYFA 1UF3A 3IVDA 5JJTA 1T70A 4M0VA 2HYOA 3H61A 4KKZA 4I5NC 4TUIA 4ORCA 3CK2A 1WAO1 4IYPC 1T71A 1XM7A 3ICFA 5EQVA 3RL5A 3K7WC 1Z2WA 4NZVA 3K7VC 1M63A 5JPFA 5IOHA 2CV9A 3THOB 3AUZA 4LTYA 3H67A 3N5UA 4UT2A 1V73A 5DNYA 1KBPA 4JA7A 3QFMA 5INBA 5GTUA 4V0XA 2IAEC 3C5WC 3KBPA 2QJCA 4H1YP 4I5LC 3QFKA 3ZTVA 3DSDA 3RL3A 4UWQA 3H64A 2HY1A 2NYLC 4H2FA 3GVEA 3H68A 3LL8A 4IL1A 3THNA 1QHWA 3PSNA 4O4KA 2Z06A 4FBWA 4ORBA 4LU9A 2BQ8X 2WDEA 3H60A 3H66A 1XZWA 3HVQA 4UT3A 1S3MA 4ZX2A 5JPEA 4OR9A 1JK7A 4O24A 2GJUA 3H63A 1AUIA 3T1IA 1S95A 3IVEA 3TGHA 2DFJA 2BCDA 4TUGA 4JA9A 3EGGA
chains in the Genus database with same CATH superfamily
1FJMA 2IE4C 2YVTA 3QG5C 3PSOA 2ZBMA 3RQZA 1II7A 4J6OA 5HPEA 1W24A 2HYPA 3E7BA 1MF8A 2Z72A 1S3LA 4H1SA 3QFNA 4HD0A 4MOYA 4XPNA 2Z1AA 4WWLA 1HPUA 1G5BA 1OIDA 1NNWA 2AHDA 4DSYA 3C9FA 4ORAA 2NPPC 2NYMC 2USHA 5J28A 4H2BA 1TCOA 5C1VA 4DHLA 2R17A 3E0JA 1S3NA 4G9JA 3DW8C 1SU1A 3IB7A 4H2GA 3RL4A 4O5GA 1WARA 1USHA 1HO5A 3H69A 2Q8UA 1S8EA 2P6BA 4FBKA 4F0ZA 2WDDA 4V0WA 3H62B 3AV0A 4MOVA 2YEQA 4FBQA 3ZU0A 1OIEA 2A22A 4B2OA 3DSCA 3IB8A 2XMOA 2WDFA 4MP0A 4ZVZA 2KKNA 5B8IA 1S70A 3V4YA 4H2IA 4DT2A 2JOGA 2O8GA 5F3WA 1U32A 1Z2XA 2DXLA 1OI8A 2WDCA 3QFOA 3FGAC 3P71C 4FCXA 1QFCA 2IE3C 1IT6A 4Q7FA 3EGHA 3D03A 4V0VA 2NXFA 2BDXA 2QFRA 4YKEA 2QFPA 1HP1A 4LACC 3E7AA 4O43A 1UTEA 2O8AA 4KBPA 4UT3B 3JYFA 2DXNA 1UF3A 3IVDA 5JJTA 1T70A 4M0VA 2HYOA 2ZO9B 2ZOAA 3H61A 4KKZA 4I5NC 4TUIA 4ORCA 3CK2A 1WAO1 4IYPC 1T71A 1XM7A 3ICFA 5EQVA 3RL5A 3K7WC 1Z2WA 4NZVA 3K7VC 1M63A 5JPFA 5IOHA 2CV9A 3FLOA 3AUZA 4LTYA 3H67A 3THOB 3N5UA 4UT2A 1V73A 5DNYA 1KBPA 4JA7A 3QFMA 5INBA 5GTUA 4V0XA 2IAEC 3C5WC 3KBPA 2QJCA 4H1YP 4I5LC 3QFKA 3ZTVA 3DSDA 3RL3A 4UWQA 3H64A 2HY1A 2NYLC 4H2FA 3GVEA 3H68A 3LL8A 4IL1A 3THNA 1QHWA 3PSNA 4O4KA 2Z06A 4FBWA 4ORBA 4LU9A 2BQ8X 2WDEA 3H60A 3H66A 1XZWA 3HVQA 4UT3A 1S3MA 4ZX2A 5JPEA 4OR9A 1JK7A 4O24A 2GJUA 3H63A 1AUIA 3T1IA 1S95A 3IVEA 3TGHA 2DFJA 2BCDA 4TUGA 4JA9A 3EGGA
chains in the Genus database with same CATH topology
1FJMA 2IE4C 2YVTA 3QG5C 3PSOA 2ZBMA 3RQZA 1II7A 4J6OA 5HPEA 1W24A 2HYPA 3E7BA 1MF8A 2Z72A 1S3LA 4H1SA 3QFNA 4HD0A 4MOYA 4XPNA 2Z1AA 4WWLA 1HPUA 1G5BA 1OIDA 1NNWA 2AHDA 4DSYA 3C9FA 4ORAA 2NPPC 2NYMC 2USHA 5J28A 4H2BA 1TCOA 5C1VA 4DHLA 2R17A 3E0JA 1S3NA 4G9JA 3DW8C 1SU1A 3IB7A 4H2GA 3RL4A 4O5GA 1WARA 1USHA 1HO5A 3H69A 2Q8UA 1S8EA 2P6BA 4FBKA 4F0ZA 2WDDA 4V0WA 3H62B 3AV0A 4MOVA 2YEQA 4FBQA 3ZU0A 1OIEA 2A22A 4B2OA 3DSCA 3IB8A 2XMOA 2WDFA 4MP0A 4ZVZA 2KKNA 5B8IA 1S70A 3V4YA 4H2IA 4DT2A 2JOGA 2O8GA 5F3WA 1U32A 1Z2XA 2DXLA 1OI8A 2WDCA 3QFOA 3FGAC 3P71C 4FCXA 1QFCA 2IE3C 1IT6A 4Q7FA 3EGHA 3D03A 4V0VA 2NXFA 2BDXA 2QFRA 4YKEA 2QFPA 1HP1A 4LACC 3E7AA 4O43A 1UTEA 2O8AA 4KBPA 4UT3B 3JYFA 2DXNA 1UF3A 3IVDA 5JJTA 1T70A 4M0VA 2HYOA 2ZO9B 2ZOAA 3H61A 4KKZA 4I5NC 4TUIA 4ORCA 3CK2A 1WAO1 4IYPC 1T71A 1XM7A 3ICFA 5EQVA 3RL5A 3K7WC 1Z2WA 4NZVA 3K7VC 1M63A 5JPFA 5IOHA 2CV9A 3FLOA 3AUZA 4LTYA 3H67A 3THOB 3N5UA 4UT2A 1V73A 5DNYA 1KBPA 4JA7A 3QFMA 5INBA 5GTUA 4V0XA 2IAEC 3C5WC 3KBPA 2QJCA 4H1YP 4I5LC 3QFKA 3ZTVA 3DSDA 3RL3A 4UWQA 3H64A 2HY1A 2NYLC 4H2FA 3GVEA 3H68A 3LL8A 4IL1A 3THNA 1QHWA 3PSNA 4O4KA 2Z06A 4FBWA 4ORBA 4LU9A 2BQ8X 2WDEA 3H60A 3H66A 1XZWA 3HVQA 4UT3A 1S3MA 4ZX2A 5JPEA 4OR9A 1JK7A 4O24A 2GJUA 3H63A 1AUIA 3T1IA 1S95A 3IVEA 3TGHA 2DFJA 2BCDA 4TUGA 4JA9A 3EGGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FJM A;  2IE4 C;  2YVT A;  3QG5 C;  3PSO A;  2ZBM A;  3RQZ A;  1II7 A;  4J6O A;  5HPE A;  1W24 A;  2HYP A;  3E7B A;  1MF8 A;  2Z72 A;  1S3L A;  4H1S A;  3QFN A;  4HD0 A;  4MOY A;  4XPN A;  2Z1A A;  4WWL A;  1HPU A;  1G5B A;  1OID A;  1NNW A;  2AHD A;  4DSY A;  3C9F A;  4ORA A;  2NPP C;  2NYM C;  2USH A;  5J28 A;  4H2B A;  1TCO A;  5C1V A;  4DHL A;  2R17 A;  1S3N A;  4G9J A;  3DW8 C;  1SU1 A;  3IB7 A;  4H2G A;  3RL4 A;  4O5G A;  1WAR A;  1USH A;  1HO5 A;  3H69 A;  2Q8U A;  1S8E A;  2P6B A;  4FBK A;  4F0Z A;  2WDD A;  4V0W A;  3H62 B;  3AV0 A;  4MOV A;  4FBQ A;  3ZU0 A;  1OIE A;  2A22 A;  4B2O A;  3DSC A;  3IB8 A;  2XMO A;  2WDF A;  4MP0 A;  4ZVZ A;  2KKN A;  5B8I A;  1S70 A;  3V4Y A;  4H2I A;  4DT2 A;  2JOG A;  2O8G A;  5F3W A;  1U32 A;  1Z2X A;  1OI8 A;  2WDC A;  3QFO A;  3FGA C;  3P71 C;  4FCX A;  1QFC A;  2IE3 C;  1IT6 A;  4Q7F A;  3EGH A;  4V0V A;  2NXF A;  2BDX A;  2QFR A;  4YKE A;  2QFP A;  1HP1 A;  4LAC C;  3E7A A;  4O43 A;  1UTE A;  2O8A A;  4KBP A;  4UT3 B;  3JYF A;  1UF3 A;  3IVD A;  5JJT A;  1T70 A;  4M0V A;  2HYO A;  3H61 A;  4KKZ A;  4I5N C;  4TUI A;  4ORC A;  3CK2 A;  1WAO 1;  4IYP C;  1T71 A;  1XM7 A;  3ICF A;  5EQV A;  3RL5 A;  3K7W C;  1Z2W A;  4NZV A;  3K7V C;  1M63 A;  5JPF A;  5IOH A;  2CV9 A;  3THO B;  3AUZ A;  4LTY A;  3H67 A;  3N5U A;  4UT2 A;  1V73 A;  5DNY A;  1KBP A;  4JA7 A;  3QFM A;  5INB A;  5GTU A;  4V0X A;  2IAE C;  3C5W C;  3KBP A;  2QJC A;  4H1Y P;  4I5L C;  3QFK A;  3ZTV A;  3DSD A;  3RL3 A;  4UWQ A;  3H64 A;  2HY1 A;  2NYL C;  4H2F A;  3GVE A;  3H68 A;  3LL8 A;  4IL1 A;  3THN A;  1QHW A;  3PSN A;  4O4K A;  2Z06 A;  4FBW A;  4ORB A;  4LU9 A;  2BQ8 X;  2WDE A;  3H60 A;  3H66 A;  1XZW A;  3HVQ A;  4UT3 A;  1S3M A;  4ZX2 A;  5JPE A;  4OR9 A;  1JK7 A;  4O24 A;  2GJU A;  3H63 A;  1AUI A;  3T1I A;  1S95 A;  3IVE A;  3TGH A;  2DFJ A;  2BCD A;  4TUG A;  4JA9 A;  3EGG A; 
#chains in the Genus database with same CATH topology
 1FJM A;  2IE4 C;  2YVT A;  3QG5 C;  3PSO A;  2ZBM A;  3RQZ A;  1II7 A;  4J6O A;  5HPE A;  1W24 A;  2HYP A;  3E7B A;  1MF8 A;  2Z72 A;  1S3L A;  4H1S A;  3QFN A;  4HD0 A;  4MOY A;  4XPN A;  2Z1A A;  4WWL A;  1HPU A;  1G5B A;  1OID A;  1NNW A;  2AHD A;  4DSY A;  3C9F A;  4ORA A;  2NPP C;  2NYM C;  2USH A;  5J28 A;  4H2B A;  1TCO A;  5C1V A;  4DHL A;  2R17 A;  3E0J A;  1S3N A;  4G9J A;  3DW8 C;  1SU1 A;  3IB7 A;  4H2G A;  3RL4 A;  4O5G A;  1WAR A;  1USH A;  1HO5 A;  3H69 A;  2Q8U A;  1S8E A;  2P6B A;  4FBK A;  4F0Z A;  2WDD A;  4V0W A;  3H62 B;  3AV0 A;  4MOV A;  2YEQ A;  4FBQ A;  3ZU0 A;  1OIE A;  2A22 A;  4B2O A;  3DSC A;  3IB8 A;  2XMO A;  2WDF A;  4MP0 A;  4ZVZ A;  2KKN A;  5B8I A;  1S70 A;  3V4Y A;  4H2I A;  4DT2 A;  2JOG A;  2O8G A;  5F3W A;  1U32 A;  1Z2X A;  2DXL A;  1OI8 A;  2WDC A;  3QFO A;  3FGA C;  3P71 C;  4FCX A;  1QFC A;  2IE3 C;  1IT6 A;  4Q7F A;  3EGH A;  3D03 A;  4V0V A;  2NXF A;  2BDX A;  2QFR A;  4YKE A;  2QFP A;  1HP1 A;  4LAC C;  3E7A A;  4O43 A;  1UTE A;  2O8A A;  4KBP A;  4UT3 B;  3JYF A;  2DXN A;  1UF3 A;  3IVD A;  5JJT A;  1T70 A;  4M0V A;  2HYO A;  2ZO9 B;  2ZOA A;  3H61 A;  4KKZ A;  4I5N C;  4TUI A;  4ORC A;  3CK2 A;  1WAO 1;  4IYP C;  1T71 A;  1XM7 A;  3ICF A;  5EQV A;  3RL5 A;  3K7W C;  1Z2W A;  4NZV A;  3K7V C;  1M63 A;  5JPF A;  5IOH A;  2CV9 A;  3FLO A;  3AUZ A;  4LTY A;  3H67 A;  3THO B;  3N5U A;  4UT2 A;  1V73 A;  5DNY A;  1KBP A;  4JA7 A;  3QFM A;  5INB A;  5GTU A;  4V0X A;  2IAE C;  3C5W C;  3KBP A;  2QJC A;  4H1Y P;  4I5L C;  3QFK A;  3ZTV A;  3DSD A;  3RL3 A;  4UWQ A;  3H64 A;  2HY1 A;  2NYL C;  4H2F A;  3GVE A;  3H68 A;  3LL8 A;  4IL1 A;  3THN A;  1QHW A;  3PSN A;  4O4K A;  2Z06 A;  4FBW A;  4ORB A;  4LU9 A;  2BQ8 X;  2WDE A;  3H60 A;  3H66 A;  1XZW A;  3HVQ A;  4UT3 A;  1S3M A;  4ZX2 A;  5JPE A;  4OR9 A;  1JK7 A;  4O24 A;  2GJU A;  3H63 A;  1AUI A;  3T1I A;  1S95 A;  3IVE A;  3TGH A;  2DFJ A;  2BCD A;  4TUG A;  4JA9 A;  3EGG A; 
#chains in the Genus database with same CATH homology
 1FJM A;  2IE4 C;  2YVT A;  3QG5 C;  3PSO A;  2ZBM A;  3RQZ A;  1II7 A;  4J6O A;  5HPE A;  1W24 A;  2HYP A;  3E7B A;  1MF8 A;  2Z72 A;  1S3L A;  4H1S A;  3QFN A;  4HD0 A;  4MOY A;  4XPN A;  2Z1A A;  4WWL A;  1HPU A;  1G5B A;  1OID A;  1NNW A;  2AHD A;  4DSY A;  3C9F A;  4ORA A;  2NPP C;  2NYM C;  2USH A;  5J28 A;  4H2B A;  1TCO A;  5C1V A;  4DHL A;  2R17 A;  3E0J A;  1S3N A;  4G9J A;  3DW8 C;  1SU1 A;  3IB7 A;  4H2G A;  3RL4 A;  4O5G A;  1WAR A;  1USH A;  1HO5 A;  3H69 A;  2Q8U A;  1S8E A;  2P6B A;  4FBK A;  4F0Z A;  2WDD A;  4V0W A;  3H62 B;  3AV0 A;  4MOV A;  2YEQ A;  4FBQ A;  3ZU0 A;  1OIE A;  2A22 A;  4B2O A;  3DSC A;  3IB8 A;  2XMO A;  2WDF A;  4MP0 A;  4ZVZ A;  2KKN A;  5B8I A;  1S70 A;  3V4Y A;  4H2I A;  4DT2 A;  2JOG A;  2O8G A;  5F3W A;  1U32 A;  1Z2X A;  2DXL A;  1OI8 A;  2WDC A;  3QFO A;  3FGA C;  3P71 C;  4FCX A;  1QFC A;  2IE3 C;  1IT6 A;  4Q7F A;  3EGH A;  3D03 A;  4V0V A;  2NXF A;  2BDX A;  2QFR A;  4YKE A;  2QFP A;  1HP1 A;  4LAC C;  3E7A A;  4O43 A;  1UTE A;  2O8A A;  4KBP A;  4UT3 B;  3JYF A;  2DXN A;  1UF3 A;  3IVD A;  5JJT A;  1T70 A;  4M0V A;  2HYO A;  2ZO9 B;  2ZOA A;  3H61 A;  4KKZ A;  4I5N C;  4TUI A;  4ORC A;  3CK2 A;  1WAO 1;  4IYP C;  1T71 A;  1XM7 A;  3ICF A;  5EQV A;  3RL5 A;  3K7W C;  1Z2W A;  4NZV A;  3K7V C;  1M63 A;  5JPF A;  5IOH A;  2CV9 A;  3FLO A;  3AUZ A;  4LTY A;  3H67 A;  3THO B;  3N5U A;  4UT2 A;  1V73 A;  5DNY A;  1KBP A;  4JA7 A;  3QFM A;  5INB A;  5GTU A;  4V0X A;  2IAE C;  3C5W C;  3KBP A;  2QJC A;  4H1Y P;  4I5L C;  3QFK A;  3ZTV A;  3DSD A;  3RL3 A;  4UWQ A;  3H64 A;  2HY1 A;  2NYL C;  4H2F A;  3GVE A;  3H68 A;  3LL8 A;  4IL1 A;  3THN A;  1QHW A;  3PSN A;  4O4K A;  2Z06 A;  4FBW A;  4ORB A;  4LU9 A;  2BQ8 X;  2WDE A;  3H60 A;  3H66 A;  1XZW A;  3HVQ A;  4UT3 A;  1S3M A;  4ZX2 A;  5JPE A;  4OR9 A;  1JK7 A;  4O24 A;  2GJU A;  3H63 A;  1AUI A;  3T1I A;  1S95 A;  3IVE A;  3TGH A;  2DFJ A;  2BCD A;  4TUG A;  4JA9 A;  3EGG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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