3PSNA

Crystal structure of mouse vps29 complexed with mn2+
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
183
structure length
183
Chain Sequence
RMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Vacuolar protein sorting-associated protein 29
publication title Conformational dynamics and biomolecular interactions of VPS29 studied by NMR and X-ray crystallography
rcsb
source organism Mus musculus
molecule tags Hydrolase
total genus 51
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3psnA00
1UTEA 1S3MA 2Q8UA 4LACC 4XPNA 1WARA 3QG5C 4G9JA 4MP0A 3H66A 4O5GA 3QFOA 1JK7A 3GVEA 4H2GA 4DHLA 2BQ8X 3H61A 3E7BA 3H69A 3RL5A 4KKZA 4H2BA 4H2IA 1WAO1 2O8GA 3AV0A 1S3LA 2NYMC 3H64A 1HP1A 1M63A 3IB8A 2IE3C 4Q7FA 4I5NC 1TCOA 5EQVA 1KBPA 1OIEA 4O43A 4DT2A 2IAEC 3V4YA 1OI8A 4V0XA 1FJMA 2QJCA 3EGGA 3H62B 3N5UA 4I5LC 5JPEA 3DW8C 2JOGA 2DFJA 4V0WA 4O24A 5JPFA 5C1VA 4IYPC 3JYFA 4F0ZA 3QFMA 4ORCA 2BDXA 3DSDA 2IE4C 3H60A 3THOB 4UT3A 3ICFA 1UF3A 3IVEA 3LL8A 4ORAA 4UT3B 4UT2A 2USHA 3ZTVA 5B8IA 2WDDA 2BCDA 3ZU0A 1T70A 3CK2A 1SU1A 3PSOA 3FGAC 3E7AA 2QFRA 5GTUA 2Z72A 4O4KA 3EGHA 5INBA 3C5WC 4FBWA 1S95A 2ZBMA 3THNA 2GJUA 2XMOA 2A22A 3IVDA 5HPEA 3K7WC 1XZWA 2AHDA 2YVTA 4M0VA 2CV9A 4MOYA 4WWLA 4MOVA 2Z1AA 3P71C 4H1YP 3H68A 4LTYA 2WDEA 3RL3A 4DSYA 4TUIA 1V73A 4KBPA 3RQZA 1AUIA 3T1IA 2NPPC 2Z06A 4NZVA 2O8AA 4ZVZA 2HY1A 3AUZA 4V0VA 4J6OA 5F3WA 2NXFA 2WDFA 4LU9A 3RL4A 2KKNA 5J28A 3HVQA 1S8EA 4IL1A 4B2OA 1G5BA 1IT6A 1W24A 2NYLC 3DSCA 4YKEA 2HYPA 1S70A 2R17A 1MF8A 3H67A 4UWQA 2P6BA 4JA9A 1Z2XA 1U32A 5IOHA 1USHA 4HD0A 1QFCA 3TGHA 1HPUA 2QFPA 1NNWA 2HYOA 3K7VC 1XM7A 1Z2WA 4JA7A 1OIDA 4TUGA 4H1SA 4FBKA 1QHWA 4ORBA 3IB7A 3QFNA 1T71A 3KBPA 3PSNA 3H63A 1II7A 4OR9A 2WDCA 3QFKA 3C9FA 4FCXA 1HO5A 5JJTA 5DNYA 1S3NA 4ZX2A 4FBQA 4H2FA
chains in the Genus database with same CATH superfamily
1UTEA 1S3MA 2Q8UA 4LACC 4XPNA 1WARA 3QG5C 4G9JA 4MP0A 3H66A 4O5GA 3QFOA 1JK7A 3GVEA 4H2GA 4DHLA 2BQ8X 3H61A 3E7BA 3H69A 3RL5A 4KKZA 4H2BA 4H2IA 1WAO1 2O8GA 3AV0A 1S3LA 2NYMC 3H64A 1HP1A 1M63A 3IB8A 2IE3C 4Q7FA 4I5NC 1TCOA 3E0JA 5EQVA 1KBPA 1OIEA 4O43A 4DT2A 2DXNA 2IAEC 3V4YA 1OI8A 4V0XA 1FJMA 2QJCA 3EGGA 3H62B 3N5UA 4I5LC 5JPEA 3DW8C 2JOGA 2DFJA 4V0WA 2YEQA 4O24A 5JPFA 5C1VA 4IYPC 3JYFA 4F0ZA 2DXLA 3QFMA 4ORCA 2BDXA 3DSDA 2IE4C 3H60A 3THOB 4UT3A 3ICFA 1UF3A 3IVEA 3LL8A 4ORAA 4UT3B 4UT2A 2USHA 3ZTVA 5B8IA 2WDDA 2BCDA 3ZU0A 1T70A 3CK2A 1SU1A 3PSOA 3FGAC 3E7AA 2QFRA 5GTUA 2Z72A 4O4KA 3EGHA 5INBA 3FLOA 3C5WC 4FBWA 1S95A 2ZBMA 3THNA 2GJUA 2XMOA 2A22A 3IVDA 5HPEA 3K7WC 1XZWA 2AHDA 2YVTA 4M0VA 3D03A 2CV9A 4MOYA 4WWLA 4MOVA 2Z1AA 3P71C 4H1YP 3H68A 4LTYA 2WDEA 3RL3A 4DSYA 4TUIA 1V73A 4KBPA 3RQZA 1AUIA 3T1IA 2NPPC 2Z06A 4NZVA 2O8AA 4ZVZA 2HY1A 3AUZA 4V0VA 4J6OA 5F3WA 2NXFA 2WDFA 2ZOAA 4LU9A 3RL4A 2KKNA 5J28A 3HVQA 1S8EA 4IL1A 4B2OA 1G5BA 1IT6A 1W24A 2NYLC 3DSCA 4YKEA 2HYPA 1S70A 2R17A 1MF8A 3H67A 4UWQA 2P6BA 4JA9A 2ZO9B 1Z2XA 1U32A 5IOHA 1USHA 4HD0A 1QFCA 3TGHA 1HPUA 2QFPA 1NNWA 2HYOA 3K7VC 1XM7A 1Z2WA 4JA7A 1OIDA 4TUGA 4H1SA 4FBKA 1QHWA 4ORBA 3IB7A 3QFNA 1T71A 3KBPA 3PSNA 3H63A 1II7A 4OR9A 2WDCA 3QFKA 3C9FA 4FCXA 1HO5A 5JJTA 5DNYA 1S3NA 4ZX2A 4FBQA 4H2FA
chains in the Genus database with same CATH topology
1UTEA 1S3MA 2Q8UA 4LACC 4XPNA 1WARA 3QG5C 4G9JA 4MP0A 3H66A 4O5GA 3QFOA 1JK7A 3GVEA 4H2GA 4DHLA 2BQ8X 3H61A 3E7BA 3H69A 3RL5A 4KKZA 4H2BA 4H2IA 1WAO1 2O8GA 3AV0A 1S3LA 2NYMC 3H64A 1HP1A 1M63A 3IB8A 2IE3C 4Q7FA 4I5NC 1TCOA 3E0JA 5EQVA 1KBPA 1OIEA 4O43A 4DT2A 2DXNA 2IAEC 3V4YA 1OI8A 4V0XA 1FJMA 2QJCA 3EGGA 3H62B 3N5UA 4I5LC 5JPEA 3DW8C 2JOGA 2DFJA 4V0WA 2YEQA 4O24A 5JPFA 5C1VA 4IYPC 3JYFA 4F0ZA 2DXLA 3QFMA 4ORCA 2BDXA 3DSDA 2IE4C 3H60A 3THOB 4UT3A 3ICFA 1UF3A 3IVEA 3LL8A 4ORAA 4UT3B 4UT2A 2USHA 3ZTVA 5B8IA 2WDDA 2BCDA 3ZU0A 1T70A 3CK2A 1SU1A 3PSOA 3FGAC 3E7AA 2QFRA 5GTUA 2Z72A 4O4KA 3EGHA 5INBA 3FLOA 3C5WC 4FBWA 1S95A 2ZBMA 3THNA 2GJUA 2XMOA 2A22A 3IVDA 5HPEA 3K7WC 1XZWA 2AHDA 2YVTA 4M0VA 3D03A 2CV9A 4MOYA 4WWLA 4MOVA 2Z1AA 3P71C 4H1YP 3H68A 4LTYA 2WDEA 3RL3A 4DSYA 4TUIA 1V73A 4KBPA 3RQZA 1AUIA 3T1IA 2NPPC 2Z06A 4NZVA 2O8AA 4ZVZA 2HY1A 3AUZA 4V0VA 4J6OA 5F3WA 2NXFA 2WDFA 2ZOAA 4LU9A 3RL4A 2KKNA 5J28A 3HVQA 1S8EA 4IL1A 4B2OA 1G5BA 1IT6A 1W24A 2NYLC 3DSCA 4YKEA 2HYPA 1S70A 2R17A 1MF8A 3H67A 4UWQA 2P6BA 4JA9A 2ZO9B 1Z2XA 1U32A 5IOHA 1USHA 4HD0A 1QFCA 3TGHA 1HPUA 2QFPA 1NNWA 2HYOA 3K7VC 1XM7A 1Z2WA 4JA7A 1OIDA 4TUGA 4H1SA 4FBKA 1QHWA 4ORBA 3IB7A 3QFNA 1T71A 3KBPA 3PSNA 3H63A 1II7A 4OR9A 2WDCA 3QFKA 3C9FA 4FCXA 1HO5A 5JJTA 5DNYA 1S3NA 4ZX2A 4FBQA 4H2FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UTE A;  1S3M A;  2Q8U A;  4LAC C;  4XPN A;  1WAR A;  3QG5 C;  4G9J A;  4MP0 A;  3H66 A;  4O5G A;  3QFO A;  1JK7 A;  3GVE A;  4H2G A;  4DHL A;  2BQ8 X;  3H61 A;  3E7B A;  3H69 A;  3RL5 A;  4KKZ A;  4H2B A;  4H2I A;  1WAO 1;  2O8G A;  3AV0 A;  1S3L A;  2NYM C;  3H64 A;  1HP1 A;  1M63 A;  3IB8 A;  2IE3 C;  4Q7F A;  4I5N C;  1TCO A;  5EQV A;  1KBP A;  1OIE A;  4O43 A;  4DT2 A;  2IAE C;  3V4Y A;  1OI8 A;  4V0X A;  1FJM A;  2QJC A;  3EGG A;  3H62 B;  3N5U A;  4I5L C;  5JPE A;  3DW8 C;  2JOG A;  2DFJ A;  4V0W A;  4O24 A;  5JPF A;  5C1V A;  4IYP C;  3JYF A;  4F0Z A;  3QFM A;  4ORC A;  2BDX A;  3DSD A;  2IE4 C;  3H60 A;  3THO B;  4UT3 A;  3ICF A;  1UF3 A;  3IVE A;  3LL8 A;  4ORA A;  4UT3 B;  4UT2 A;  2USH A;  3ZTV A;  5B8I A;  2WDD A;  2BCD A;  3ZU0 A;  1T70 A;  3CK2 A;  1SU1 A;  3PSO A;  3FGA C;  3E7A A;  2QFR A;  5GTU A;  2Z72 A;  4O4K A;  3EGH A;  5INB A;  3C5W C;  4FBW A;  1S95 A;  2ZBM A;  3THN A;  2GJU A;  2XMO A;  2A22 A;  3IVD A;  5HPE A;  3K7W C;  1XZW A;  2AHD A;  2YVT A;  4M0V A;  2CV9 A;  4MOY A;  4WWL A;  4MOV A;  2Z1A A;  3P71 C;  4H1Y P;  3H68 A;  4LTY A;  2WDE A;  3RL3 A;  4DSY A;  4TUI A;  1V73 A;  4KBP A;  3RQZ A;  1AUI A;  3T1I A;  2NPP C;  2Z06 A;  4NZV A;  2O8A A;  4ZVZ A;  2HY1 A;  3AUZ A;  4V0V A;  4J6O A;  5F3W A;  2NXF A;  2WDF A;  4LU9 A;  3RL4 A;  2KKN A;  5J28 A;  3HVQ A;  1S8E A;  4IL1 A;  4B2O A;  1G5B A;  1IT6 A;  1W24 A;  2NYL C;  3DSC A;  4YKE A;  2HYP A;  1S70 A;  2R17 A;  1MF8 A;  3H67 A;  4UWQ A;  2P6B A;  4JA9 A;  1Z2X A;  1U32 A;  5IOH A;  1USH A;  4HD0 A;  1QFC A;  3TGH A;  1HPU A;  2QFP A;  1NNW A;  2HYO A;  3K7V C;  1XM7 A;  1Z2W A;  4JA7 A;  1OID A;  4TUG A;  4H1S A;  4FBK A;  1QHW A;  4ORB A;  3IB7 A;  3QFN A;  1T71 A;  3KBP A;  3PSN A;  3H63 A;  1II7 A;  4OR9 A;  2WDC A;  3QFK A;  3C9F A;  4FCX A;  1HO5 A;  5JJT A;  5DNY A;  1S3N A;  4ZX2 A;  4FBQ A;  4H2F A; 
#chains in the Genus database with same CATH topology
 1UTE A;  1S3M A;  2Q8U A;  4LAC C;  4XPN A;  1WAR A;  3QG5 C;  4G9J A;  4MP0 A;  3H66 A;  4O5G A;  3QFO A;  1JK7 A;  3GVE A;  4H2G A;  4DHL A;  2BQ8 X;  3H61 A;  3E7B A;  3H69 A;  3RL5 A;  4KKZ A;  4H2B A;  4H2I A;  1WAO 1;  2O8G A;  3AV0 A;  1S3L A;  2NYM C;  3H64 A;  1HP1 A;  1M63 A;  3IB8 A;  2IE3 C;  4Q7F A;  4I5N C;  1TCO A;  3E0J A;  5EQV A;  1KBP A;  1OIE A;  4O43 A;  4DT2 A;  2DXN A;  2IAE C;  3V4Y A;  1OI8 A;  4V0X A;  1FJM A;  2QJC A;  3EGG A;  3H62 B;  3N5U A;  4I5L C;  5JPE A;  3DW8 C;  2JOG A;  2DFJ A;  4V0W A;  2YEQ A;  4O24 A;  5JPF A;  5C1V A;  4IYP C;  3JYF A;  4F0Z A;  2DXL A;  3QFM A;  4ORC A;  2BDX A;  3DSD A;  2IE4 C;  3H60 A;  3THO B;  4UT3 A;  3ICF A;  1UF3 A;  3IVE A;  3LL8 A;  4ORA A;  4UT3 B;  4UT2 A;  2USH A;  3ZTV A;  5B8I A;  2WDD A;  2BCD A;  3ZU0 A;  1T70 A;  3CK2 A;  1SU1 A;  3PSO A;  3FGA C;  3E7A A;  2QFR A;  5GTU A;  2Z72 A;  4O4K A;  3EGH A;  5INB A;  3FLO A;  3C5W C;  4FBW A;  1S95 A;  2ZBM A;  3THN A;  2GJU A;  2XMO A;  2A22 A;  3IVD A;  5HPE A;  3K7W C;  1XZW A;  2AHD A;  2YVT A;  4M0V A;  3D03 A;  2CV9 A;  4MOY A;  4WWL A;  4MOV A;  2Z1A A;  3P71 C;  4H1Y P;  3H68 A;  4LTY A;  2WDE A;  3RL3 A;  4DSY A;  4TUI A;  1V73 A;  4KBP A;  3RQZ A;  1AUI A;  3T1I A;  2NPP C;  2Z06 A;  4NZV A;  2O8A A;  4ZVZ A;  2HY1 A;  3AUZ A;  4V0V A;  4J6O A;  5F3W A;  2NXF A;  2WDF A;  2ZOA A;  4LU9 A;  3RL4 A;  2KKN A;  5J28 A;  3HVQ A;  1S8E A;  4IL1 A;  4B2O A;  1G5B A;  1IT6 A;  1W24 A;  2NYL C;  3DSC A;  4YKE A;  2HYP A;  1S70 A;  2R17 A;  1MF8 A;  3H67 A;  4UWQ A;  2P6B A;  4JA9 A;  2ZO9 B;  1Z2X A;  1U32 A;  5IOH A;  1USH A;  4HD0 A;  1QFC A;  3TGH A;  1HPU A;  2QFP A;  1NNW A;  2HYO A;  3K7V C;  1XM7 A;  1Z2W A;  4JA7 A;  1OID A;  4TUG A;  4H1S A;  4FBK A;  1QHW A;  4ORB A;  3IB7 A;  3QFN A;  1T71 A;  3KBP A;  3PSN A;  3H63 A;  1II7 A;  4OR9 A;  2WDC A;  3QFK A;  3C9F A;  4FCX A;  1HO5 A;  5JJT A;  5DNY A;  1S3N A;  4ZX2 A;  4FBQ A;  4H2F A; 
#chains in the Genus database with same CATH homology
 1UTE A;  1S3M A;  2Q8U A;  4LAC C;  4XPN A;  1WAR A;  3QG5 C;  4G9J A;  4MP0 A;  3H66 A;  4O5G A;  3QFO A;  1JK7 A;  3GVE A;  4H2G A;  4DHL A;  2BQ8 X;  3H61 A;  3E7B A;  3H69 A;  3RL5 A;  4KKZ A;  4H2B A;  4H2I A;  1WAO 1;  2O8G A;  3AV0 A;  1S3L A;  2NYM C;  3H64 A;  1HP1 A;  1M63 A;  3IB8 A;  2IE3 C;  4Q7F A;  4I5N C;  1TCO A;  3E0J A;  5EQV A;  1KBP A;  1OIE A;  4O43 A;  4DT2 A;  2DXN A;  2IAE C;  3V4Y A;  1OI8 A;  4V0X A;  1FJM A;  2QJC A;  3EGG A;  3H62 B;  3N5U A;  4I5L C;  5JPE A;  3DW8 C;  2JOG A;  2DFJ A;  4V0W A;  2YEQ A;  4O24 A;  5JPF A;  5C1V A;  4IYP C;  3JYF A;  4F0Z A;  2DXL A;  3QFM A;  4ORC A;  2BDX A;  3DSD A;  2IE4 C;  3H60 A;  3THO B;  4UT3 A;  3ICF A;  1UF3 A;  3IVE A;  3LL8 A;  4ORA A;  4UT3 B;  4UT2 A;  2USH A;  3ZTV A;  5B8I A;  2WDD A;  2BCD A;  3ZU0 A;  1T70 A;  3CK2 A;  1SU1 A;  3PSO A;  3FGA C;  3E7A A;  2QFR A;  5GTU A;  2Z72 A;  4O4K A;  3EGH A;  5INB A;  3FLO A;  3C5W C;  4FBW A;  1S95 A;  2ZBM A;  3THN A;  2GJU A;  2XMO A;  2A22 A;  3IVD A;  5HPE A;  3K7W C;  1XZW A;  2AHD A;  2YVT A;  4M0V A;  3D03 A;  2CV9 A;  4MOY A;  4WWL A;  4MOV A;  2Z1A A;  3P71 C;  4H1Y P;  3H68 A;  4LTY A;  2WDE A;  3RL3 A;  4DSY A;  4TUI A;  1V73 A;  4KBP A;  3RQZ A;  1AUI A;  3T1I A;  2NPP C;  2Z06 A;  4NZV A;  2O8A A;  4ZVZ A;  2HY1 A;  3AUZ A;  4V0V A;  4J6O A;  5F3W A;  2NXF A;  2WDF A;  2ZOA A;  4LU9 A;  3RL4 A;  2KKN A;  5J28 A;  3HVQ A;  1S8E A;  4IL1 A;  4B2O A;  1G5B A;  1IT6 A;  1W24 A;  2NYL C;  3DSC A;  4YKE A;  2HYP A;  1S70 A;  2R17 A;  1MF8 A;  3H67 A;  4UWQ A;  2P6B A;  4JA9 A;  2ZO9 B;  1Z2X A;  1U32 A;  5IOH A;  1USH A;  4HD0 A;  1QFC A;  3TGH A;  1HPU A;  2QFP A;  1NNW A;  2HYO A;  3K7V C;  1XM7 A;  1Z2W A;  4JA7 A;  1OID A;  4TUG A;  4H1S A;  4FBK A;  1QHW A;  4ORB A;  3IB7 A;  3QFN A;  1T71 A;  3KBP A;  3PSN A;  3H63 A;  1II7 A;  4OR9 A;  2WDC A;  3QFK A;  3C9F A;  4FCX A;  1HO5 A;  5JJT A;  5DNY A;  1S3N A;  4ZX2 A;  4FBQ A;  4H2F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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