3PSNA

Crystal structure of mouse vps29 complexed with mn2+
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
183
structure length
183
Chain Sequence
RMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Vacuolar protein sorting-associated protein 29
publication title Conformational dynamics and biomolecular interactions of VPS29 studied by NMR and X-ray crystallography
rcsb
source organism Mus musculus
total genus 51
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3psnA00
2IE3C 3EGGA 2WDDA 3H62B 3RL4A 1UTEA 1OI8A 3GVEA 3C9FA 1S3NA 3QFOA 1SU1A 4F0ZA 1S3LA 1Z2WA 4J6OA 1FJMA 3CK2A 3IVDA 4O4KA 4DT2A 4ORAA 2QJCA 4HD0A 4NZVA 5J28A 2BCDA 3DSDA 4ORBA 3C5WC 3P71C 1HO5A 2Q8UA 4B2OA 3FGAC 3EGHA 3T1IA 2XMOA 5C1VA 4UWQA 3KBPA 3AV0A 2QFPA 5HPEA 4V0VA 4LTYA 4H2GA 2USHA 3LL8A 3RL5A 2CV9A 4FBKA 1XZWA 2O8GA 4V0WA 3DW8C 2JOGA 5JPFA 3V4YA 3QFMA 3K7VC 4O24A 1U32A 4ORCA 4UT2A 1NNWA 4H1YP 3H68A 5IOHA 3ZTVA 2HY1A 2BDXA 2HYPA 3QG5C 5GTUA 2NYLC 2IE4C 3HVQA 2DFJA 2NPPC 1II7A 3ICFA 3QFKA 4H1SA 4I5NC 3PSNA 4YKEA 1WAO1 4FBQA 3N5UA 3H61A 3QFNA 1QFCA 4H2BA 4LACC 4DSYA 5B8IA 1XM7A 5EQVA 2HYOA 4DHLA 1S70A 1G5BA 3H60A 3H66A 3RQZA 1Z2XA 2Z72A 1OIEA 3E7BA 4MOYA 1KBPA 4FBWA 1V73A 4H2FA 3IVEA 1S3MA 1W24A 1M63A 2A22A 5INBA 1WARA 1S95A 1T71A 3ZU0A 2O8AA 1USHA 1QHWA 2GJUA 3THOB 1JK7A 2WDCA 5F3WA 4FCXA 4TUGA 3H64A 3PSOA 2R17A 3H63A 4UT3B 1S8EA 4KKZA 5JJTA 1HP1A 4V0XA 4G9JA 2Z1AA 5JPEA 4MOVA 3RL3A 4O5GA 4UT3A 4LU9A 4ZVZA 3THNA 4M0VA 1AUIA 4JA9A 4XPNA 2YVTA 2NXFA 1TCOA 3IB7A 1HPUA 3IB8A 2WDEA 2BQ8X 3H67A 3E7AA 3K7WC 4OR9A 2P6BA 1UF3A 4Q7FA 4WWLA 2WDFA 3TGHA 2AHDA 1MF8A 2Z06A 3H69A 4ZX2A 3DSCA 5DNYA 4MP0A 1T70A 2NYMC 4H2IA 4KBPA 4O43A 1OIDA 2KKNA 4IL1A 3AUZA 4TUIA 3JYFA 4I5LC 2ZBMA 4IYPC 1IT6A 4JA7A 2QFRA 2IAEC
chains in the Genus database with same CATH superfamily
2IE3C 3EGGA 2WDDA 3H62B 3RL4A 1UTEA 1OI8A 3GVEA 3C9FA 1S3NA 3QFOA 1SU1A 4F0ZA 1S3LA 1Z2WA 4J6OA 1FJMA 3CK2A 3IVDA 4O4KA 4DT2A 4ORAA 2QJCA 4HD0A 4NZVA 5J28A 2BCDA 3DSDA 4ORBA 3C5WC 3P71C 1HO5A 2Q8UA 4B2OA 3FGAC 3EGHA 3T1IA 2ZOAA 2XMOA 5C1VA 4UWQA 3KBPA 3AV0A 2QFPA 5HPEA 4V0VA 4LTYA 4H2GA 2USHA 3LL8A 3RL5A 2CV9A 2DXLA 1XZWA 2O8GA 4FBKA 4V0WA 2DXNA 3DW8C 2JOGA 5JPFA 3V4YA 3QFMA 3K7VC 4O24A 1U32A 4ORCA 4UT2A 1NNWA 4H1YP 3H68A 5IOHA 3ZTVA 2HY1A 2BDXA 2HYPA 3QG5C 5GTUA 2NYLC 2IE4C 3HVQA 2DFJA 2NPPC 1II7A 3ICFA 3QFKA 4H1SA 4I5NC 3PSNA 4YKEA 1WAO1 3D03A 3N5UA 3H61A 3QFNA 1QFCA 4FBQA 4H2BA 4LACC 4DSYA 5B8IA 1XM7A 5EQVA 2HYOA 4DHLA 1S70A 1G5BA 3H60A 3H66A 3RQZA 1Z2XA 2Z72A 3E0JA 1OIEA 3E7BA 4MOYA 3FLOA 1KBPA 4FBWA 1V73A 4H2FA 3IVEA 1S3MA 1W24A 1M63A 2A22A 5INBA 1WARA 1S95A 1T71A 3ZU0A 2O8AA 1USHA 1QHWA 2GJUA 3THOB 1JK7A 2WDCA 5F3WA 4FCXA 4TUGA 3H64A 3PSOA 2R17A 3H63A 4UT3B 1S8EA 4KKZA 5JJTA 1HP1A 4V0XA 4G9JA 2Z1AA 5JPEA 4MOVA 3RL3A 4O5GA 4UT3A 4LU9A 2YEQA 4ZVZA 3THNA 4M0VA 1AUIA 4JA9A 4XPNA 2YVTA 2NXFA 1TCOA 3IB7A 1HPUA 3IB8A 2WDEA 2BQ8X 2ZO9B 3H67A 3E7AA 3K7WC 4OR9A 2P6BA 1UF3A 4Q7FA 4WWLA 2WDFA 3TGHA 2AHDA 1MF8A 2Z06A 3H69A 4ZX2A 3DSCA 5DNYA 4MP0A 1T70A 2NYMC 4H2IA 4KBPA 4O43A 1OIDA 2KKNA 4IL1A 3AUZA 4TUIA 3JYFA 4I5LC 2ZBMA 4IYPC 1IT6A 4JA7A 2QFRA 2IAEC
chains in the Genus database with same CATH topology
2IE3C 3EGGA 2WDDA 3H62B 3RL4A 1UTEA 1OI8A 3GVEA 3C9FA 1S3NA 3QFOA 1SU1A 4F0ZA 1S3LA 1Z2WA 4J6OA 1FJMA 3CK2A 3IVDA 4O4KA 4DT2A 4ORAA 2QJCA 4HD0A 4NZVA 5J28A 2BCDA 3DSDA 4ORBA 3C5WC 3P71C 1HO5A 2Q8UA 4B2OA 3FGAC 3EGHA 3T1IA 2ZOAA 2XMOA 5C1VA 4UWQA 3KBPA 3AV0A 2QFPA 5HPEA 4V0VA 4LTYA 4H2GA 2USHA 3LL8A 3RL5A 2CV9A 2DXLA 1XZWA 2O8GA 4FBKA 4V0WA 2DXNA 3DW8C 2JOGA 5JPFA 3V4YA 3QFMA 3K7VC 4O24A 1U32A 4ORCA 4UT2A 1NNWA 4H1YP 3H68A 5IOHA 3ZTVA 2HY1A 2BDXA 2HYPA 3QG5C 5GTUA 2NYLC 2IE4C 3HVQA 2DFJA 2NPPC 1II7A 3ICFA 3QFKA 4H1SA 4I5NC 3PSNA 4YKEA 1WAO1 3D03A 3N5UA 3H61A 3QFNA 1QFCA 4FBQA 4H2BA 4LACC 4DSYA 5B8IA 1XM7A 5EQVA 2HYOA 4DHLA 1S70A 1G5BA 3H60A 3H66A 3RQZA 1Z2XA 2Z72A 3E0JA 1OIEA 3E7BA 4MOYA 3FLOA 1KBPA 4FBWA 1V73A 4H2FA 3IVEA 1S3MA 1W24A 1M63A 2A22A 5INBA 1WARA 1S95A 1T71A 3ZU0A 2O8AA 1USHA 1QHWA 2GJUA 3THOB 1JK7A 2WDCA 5F3WA 4FCXA 4TUGA 3H64A 3PSOA 2R17A 3H63A 4UT3B 1S8EA 4KKZA 5JJTA 1HP1A 4V0XA 4G9JA 2Z1AA 5JPEA 4MOVA 3RL3A 4O5GA 4UT3A 4LU9A 2YEQA 4ZVZA 3THNA 4M0VA 1AUIA 4JA9A 4XPNA 2YVTA 2NXFA 1TCOA 3IB7A 1HPUA 3IB8A 2WDEA 2BQ8X 2ZO9B 3H67A 3E7AA 3K7WC 4OR9A 2P6BA 1UF3A 4Q7FA 4WWLA 2WDFA 3TGHA 2AHDA 1MF8A 2Z06A 3H69A 4ZX2A 3DSCA 5DNYA 4MP0A 1T70A 2NYMC 4H2IA 4KBPA 4O43A 1OIDA 2KKNA 4IL1A 3AUZA 4TUIA 3JYFA 4I5LC 2ZBMA 4IYPC 1IT6A 4JA7A 2QFRA 2IAEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IE3 C;  3EGG A;  2WDD A;  3H62 B;  3RL4 A;  1UTE A;  1OI8 A;  3GVE A;  3C9F A;  1S3N A;  3QFO A;  1SU1 A;  4F0Z A;  1S3L A;  1Z2W A;  4J6O A;  1FJM A;  3CK2 A;  3IVD A;  4O4K A;  4DT2 A;  4ORA A;  2QJC A;  4HD0 A;  4NZV A;  5J28 A;  2BCD A;  3DSD A;  4ORB A;  3C5W C;  3P71 C;  1HO5 A;  2Q8U A;  4B2O A;  3FGA C;  3EGH A;  3T1I A;  2XMO A;  5C1V A;  4UWQ A;  3KBP A;  3AV0 A;  2QFP A;  5HPE A;  4V0V A;  4LTY A;  4H2G A;  2USH A;  3LL8 A;  3RL5 A;  2CV9 A;  4FBK A;  1XZW A;  2O8G A;  4V0W A;  3DW8 C;  2JOG A;  5JPF A;  3V4Y A;  3QFM A;  3K7V C;  4O24 A;  1U32 A;  4ORC A;  4UT2 A;  1NNW A;  4H1Y P;  3H68 A;  5IOH A;  3ZTV A;  2HY1 A;  2BDX A;  2HYP A;  3QG5 C;  5GTU A;  2NYL C;  2IE4 C;  3HVQ A;  2DFJ A;  2NPP C;  1II7 A;  3ICF A;  3QFK A;  4H1S A;  4I5N C;  3PSN A;  4YKE A;  1WAO 1;  4FBQ A;  3N5U A;  3H61 A;  3QFN A;  1QFC A;  4H2B A;  4LAC C;  4DSY A;  5B8I A;  1XM7 A;  5EQV A;  2HYO A;  4DHL A;  1S70 A;  1G5B A;  3H60 A;  3H66 A;  3RQZ A;  1Z2X A;  2Z72 A;  1OIE A;  3E7B A;  4MOY A;  1KBP A;  4FBW A;  1V73 A;  4H2F A;  3IVE A;  1S3M A;  1W24 A;  1M63 A;  2A22 A;  5INB A;  1WAR A;  1S95 A;  1T71 A;  3ZU0 A;  2O8A A;  1USH A;  1QHW A;  2GJU A;  3THO B;  1JK7 A;  2WDC A;  5F3W A;  4FCX A;  4TUG A;  3H64 A;  3PSO A;  2R17 A;  3H63 A;  4UT3 B;  1S8E A;  4KKZ A;  5JJT A;  1HP1 A;  4V0X A;  4G9J A;  2Z1A A;  5JPE A;  4MOV A;  3RL3 A;  4O5G A;  4UT3 A;  4LU9 A;  4ZVZ A;  3THN A;  4M0V A;  1AUI A;  4JA9 A;  4XPN A;  2YVT A;  2NXF A;  1TCO A;  3IB7 A;  1HPU A;  3IB8 A;  2WDE A;  2BQ8 X;  3H67 A;  3E7A A;  3K7W C;  4OR9 A;  2P6B A;  1UF3 A;  4Q7F A;  4WWL A;  2WDF A;  3TGH A;  2AHD A;  1MF8 A;  2Z06 A;  3H69 A;  4ZX2 A;  3DSC A;  5DNY A;  4MP0 A;  1T70 A;  2NYM C;  4H2I A;  4KBP A;  4O43 A;  1OID A;  2KKN A;  4IL1 A;  3AUZ A;  4TUI A;  3JYF A;  4I5L C;  2ZBM A;  4IYP C;  1IT6 A;  4JA7 A;  2QFR A;  2IAE C; 
#chains in the Genus database with same CATH topology
 2IE3 C;  3EGG A;  2WDD A;  3H62 B;  3RL4 A;  1UTE A;  1OI8 A;  3GVE A;  3C9F A;  1S3N A;  3QFO A;  1SU1 A;  4F0Z A;  1S3L A;  1Z2W A;  4J6O A;  1FJM A;  3CK2 A;  3IVD A;  4O4K A;  4DT2 A;  4ORA A;  2QJC A;  4HD0 A;  4NZV A;  5J28 A;  2BCD A;  3DSD A;  4ORB A;  3C5W C;  3P71 C;  1HO5 A;  2Q8U A;  4B2O A;  3FGA C;  3EGH A;  3T1I A;  2ZOA A;  2XMO A;  5C1V A;  4UWQ A;  3KBP A;  3AV0 A;  2QFP A;  5HPE A;  4V0V A;  4LTY A;  4H2G A;  2USH A;  3LL8 A;  3RL5 A;  2CV9 A;  2DXL A;  1XZW A;  2O8G A;  4FBK A;  4V0W A;  2DXN A;  3DW8 C;  2JOG A;  5JPF A;  3V4Y A;  3QFM A;  3K7V C;  4O24 A;  1U32 A;  4ORC A;  4UT2 A;  1NNW A;  4H1Y P;  3H68 A;  5IOH A;  3ZTV A;  2HY1 A;  2BDX A;  2HYP A;  3QG5 C;  5GTU A;  2NYL C;  2IE4 C;  3HVQ A;  2DFJ A;  2NPP C;  1II7 A;  3ICF A;  3QFK A;  4H1S A;  4I5N C;  3PSN A;  4YKE A;  1WAO 1;  3D03 A;  3N5U A;  3H61 A;  3QFN A;  1QFC A;  4FBQ A;  4H2B A;  4LAC C;  4DSY A;  5B8I A;  1XM7 A;  5EQV A;  2HYO A;  4DHL A;  1S70 A;  1G5B A;  3H60 A;  3H66 A;  3RQZ A;  1Z2X A;  2Z72 A;  3E0J A;  1OIE A;  3E7B A;  4MOY A;  3FLO A;  1KBP A;  4FBW A;  1V73 A;  4H2F A;  3IVE A;  1S3M A;  1W24 A;  1M63 A;  2A22 A;  5INB A;  1WAR A;  1S95 A;  1T71 A;  3ZU0 A;  2O8A A;  1USH A;  1QHW A;  2GJU A;  3THO B;  1JK7 A;  2WDC A;  5F3W A;  4FCX A;  4TUG A;  3H64 A;  3PSO A;  2R17 A;  3H63 A;  4UT3 B;  1S8E A;  4KKZ A;  5JJT A;  1HP1 A;  4V0X A;  4G9J A;  2Z1A A;  5JPE A;  4MOV A;  3RL3 A;  4O5G A;  4UT3 A;  4LU9 A;  2YEQ A;  4ZVZ A;  3THN A;  4M0V A;  1AUI A;  4JA9 A;  4XPN A;  2YVT A;  2NXF A;  1TCO A;  3IB7 A;  1HPU A;  3IB8 A;  2WDE A;  2BQ8 X;  2ZO9 B;  3H67 A;  3E7A A;  3K7W C;  4OR9 A;  2P6B A;  1UF3 A;  4Q7F A;  4WWL A;  2WDF A;  3TGH A;  2AHD A;  1MF8 A;  2Z06 A;  3H69 A;  4ZX2 A;  3DSC A;  5DNY A;  4MP0 A;  1T70 A;  2NYM C;  4H2I A;  4KBP A;  4O43 A;  1OID A;  2KKN A;  4IL1 A;  3AUZ A;  4TUI A;  3JYF A;  4I5L C;  2ZBM A;  4IYP C;  1IT6 A;  4JA7 A;  2QFR A;  2IAE C; 
#chains in the Genus database with same CATH homology
 2IE3 C;  3EGG A;  2WDD A;  3H62 B;  3RL4 A;  1UTE A;  1OI8 A;  3GVE A;  3C9F A;  1S3N A;  3QFO A;  1SU1 A;  4F0Z A;  1S3L A;  1Z2W A;  4J6O A;  1FJM A;  3CK2 A;  3IVD A;  4O4K A;  4DT2 A;  4ORA A;  2QJC A;  4HD0 A;  4NZV A;  5J28 A;  2BCD A;  3DSD A;  4ORB A;  3C5W C;  3P71 C;  1HO5 A;  2Q8U A;  4B2O A;  3FGA C;  3EGH A;  3T1I A;  2ZOA A;  2XMO A;  5C1V A;  4UWQ A;  3KBP A;  3AV0 A;  2QFP A;  5HPE A;  4V0V A;  4LTY A;  4H2G A;  2USH A;  3LL8 A;  3RL5 A;  2CV9 A;  2DXL A;  1XZW A;  2O8G A;  4FBK A;  4V0W A;  2DXN A;  3DW8 C;  2JOG A;  5JPF A;  3V4Y A;  3QFM A;  3K7V C;  4O24 A;  1U32 A;  4ORC A;  4UT2 A;  1NNW A;  4H1Y P;  3H68 A;  5IOH A;  3ZTV A;  2HY1 A;  2BDX A;  2HYP A;  3QG5 C;  5GTU A;  2NYL C;  2IE4 C;  3HVQ A;  2DFJ A;  2NPP C;  1II7 A;  3ICF A;  3QFK A;  4H1S A;  4I5N C;  3PSN A;  4YKE A;  1WAO 1;  3D03 A;  3N5U A;  3H61 A;  3QFN A;  1QFC A;  4FBQ A;  4H2B A;  4LAC C;  4DSY A;  5B8I A;  1XM7 A;  5EQV A;  2HYO A;  4DHL A;  1S70 A;  1G5B A;  3H60 A;  3H66 A;  3RQZ A;  1Z2X A;  2Z72 A;  3E0J A;  1OIE A;  3E7B A;  4MOY A;  3FLO A;  1KBP A;  4FBW A;  1V73 A;  4H2F A;  3IVE A;  1S3M A;  1W24 A;  1M63 A;  2A22 A;  5INB A;  1WAR A;  1S95 A;  1T71 A;  3ZU0 A;  2O8A A;  1USH A;  1QHW A;  2GJU A;  3THO B;  1JK7 A;  2WDC A;  5F3W A;  4FCX A;  4TUG A;  3H64 A;  3PSO A;  2R17 A;  3H63 A;  4UT3 B;  1S8E A;  4KKZ A;  5JJT A;  1HP1 A;  4V0X A;  4G9J A;  2Z1A A;  5JPE A;  4MOV A;  3RL3 A;  4O5G A;  4UT3 A;  4LU9 A;  2YEQ A;  4ZVZ A;  3THN A;  4M0V A;  1AUI A;  4JA9 A;  4XPN A;  2YVT A;  2NXF A;  1TCO A;  3IB7 A;  1HPU A;  3IB8 A;  2WDE A;  2BQ8 X;  2ZO9 B;  3H67 A;  3E7A A;  3K7W C;  4OR9 A;  2P6B A;  1UF3 A;  4Q7F A;  4WWL A;  2WDF A;  3TGH A;  2AHD A;  1MF8 A;  2Z06 A;  3H69 A;  4ZX2 A;  3DSC A;  5DNY A;  4MP0 A;  1T70 A;  2NYM C;  4H2I A;  4KBP A;  4O43 A;  1OID A;  2KKN A;  4IL1 A;  3AUZ A;  4TUI A;  3JYF A;  4I5L C;  2ZBM A;  4IYP C;  1IT6 A;  4JA7 A;  2QFR A;  2IAE C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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