1I50L

Rna polymerase ii crystal form ii at 2.8 a resolution
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (31-34)Updating...
connected with : NaN
molecule tags Transcription
publication title Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution.
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 1i50L00
1Y1WL 4A3IL 4A3FL 5C3EL 3GTPL 3S1NL 4A93L 2PMZP 1TWAL 3S2HL 2VUML 1K83L 3M3YL 4C3HL 5C4JL 3PO3L 5FLML 2E2HL 3S2DL 3RZDL 2WAQP 5M5YL 1WCML 2NVYL 2JA7L 4C3JL 5M5XL 3S17L 4BY7L 4X6AL 3FKIL 4A3GL 5C44L 1TWFL 4A3DL 3S1ML 3S15L 4Y7NL 4BBRL 4AYBP 5M3ML 3GTOL 4BXXL 1Y1VL 3S1RL 5C4XL 1TWCL 4A3ML 3GTLL 2E2IL 4A3CL 3GTKL 3GTGL 5IP7L 2JA8L 3HOZL 3GTQL 3S14L 3S1QL 3RZOL 5IP9L 4BY1L 2R92L 4C3IL 2R93L 2NVTL 3PO2L 3GTML 4QIWP 3HOUL 1I6HL 1R9TL 1I50L 4A3BL 2NVXL 3H3VM 4A3LL 2B63L 2NVQL 3HOWL 5M3FL 3M4OL 2JA6L 3H0GL 1TWHL 2WB1P 5IYDL 2JA5L 3S16L 3CQZL 4BBSL 3I4NL 3HOXL 4A3EL 5FJ8L 1SFOL 2Y0SP 3GTJL 3HOYL 5M5WL 3HOVL 5IYBL 3K7AL 5IYCL 4Y52L 1I3QL 2E2JL 1TWGL 2R7ZL 3HKZP 3I4ML 2YU9L 4A3JL 4C2M1 4A3KL
chains in the Genus database with same CATH superfamily
4A3IL 3LWQB 3GTPL 3S1NL 4GS7D 5GAEc 1PFUA 1K83L 1IRNA 4JAGA 4C3HL 2XJVA 4AI1A 4WFN1 3HJWB 1YUXA 2PVEA 2A6HD 3P2AA 1SMMA 2PSMC 2NVYL 4X6AL 3FKIL 5C44L 2B5ID 2RFKB 4YWLA 4BXXL 5C4XL 4A3ML 3B08B 4A3CL 4U671 1SMWA 1YK4A 4AI0A 2RDVA 4XGHA 5GAGc 3QVDA 2L0ZA 3QQCE 3HOZL 1RB9A 1S2ZA 5MFPA 2DSXA 4JADA 3PZAA 1R0IA 1R0JA 1B2OA 2PVXA 2NVTL 3GTML 4AR4A 1I6HL 3JR7A 1NXEA 3H3VM 4A3LL 2C6BA 2JA6L 2JI2A 1T9PA 3KYXA 2WB1P 3CQZL 1F4LA 4A3EL 5FJ8L 4B8CD 2Y0SP 2NYDA 4V196 3FDJA 1OWCA 1LKMA 1B2JA 4Y52L 1SMUA 3LWVB 5JVG1 1VZGA 1DVBA 4E6YA 4ME3A 2R7ZL 5DM61 4A3KL 4ZN1B 1Y1WL 2XJUA 3J7Z1 3PL5A 5EIOC 4AR5A 5GAHc 1YK5A 3M3YL 3H99A 4UY81 3NFPI 1VZIA 1RDVA 3SS2A 3RZDL 2H12A 2WAQP 5M5YL 4POFA 7RXNA 2V3BB 3S17L 4AI2A 3KYYA 1NNQA 1TWFL 2CR8A 2XJTA 3S1ML 3S15L 2JI3A 1NXGA 4BBRL 4AYBP 2PPTA 5M3ML 1BFYA 1Y1VL 3RYGA 1TWCL 3GTLL 2E2IL 1YV1A 1S24A 1PFYA 5IP7L 1R0FA 3MPSA 3WWLA 2GMGA 3GTQL 4JAFA 1BQ9A 3S1QL 2A69D 5IP9L 4AHWA 3K35A 2K2DA 4AI3A 2R93L 1T9QA 4TPUA 1QCVA 2M6OA 2XJPA 2MS3A 1H7VA 2NVQL 3M4OL 3LWOB 1P7PA 1RDGA 4AR6A 2M4VA 3PIP1 1TWHL 3S16L 2KN9A 1FHMA 5AN9H 5RXNA 3H9BA 1WJVA 1RYTA 4RXNA 5M5WL 3HOVL 1ODHA 5EINC 1PFVA 3HKZP 3KYUA 5MF6A 4G6BA 1IU5A 1QYBA 1E8JA 4A93L 2PMZP 3S2HL 2EY4E 2XJQA 2CKAA 3PO3L 4XXBB 5IY0A 3LNLA 2ERJA 2E2HL 1WCML 4K9FA 2JA7L 1C09A 5MFZA 4AHXA 5M5XL 4BY7L 2AQCA 3LWPB 4A3DL 1CADA 2A6ED 3H9CA 3A44A 3H97A 5MGNA 3B0AB 3S1RL 1S30A 2BE5D 3GTKL 3GTGL 1R0GA 1LTLA 4ZN3B 3RZOL 2KKDA 4AR3A 5H1Sc 1RWDA 4BY1L 2V0FA 2R92L 1YUZA 4C3IL 1LKPA 4QIWP 3HOUL 5AI2A 2NVXL 5AI3A 1R0HA 1BE7A 2B63L 3HOWL 5M3FL 2APOB 1VZHA 2Z3QB 3PKIA 5IYDL 2JA5L 1PFWA 3HOXL 1ZRPA 2M4YA 1SFOL 2A68D 1QQTA 4YWMA 3K7AL 2V0EA 3PKJA 1IU6A 2M6PA 5DM71 2E2JL 5JVH1 1IROA 2YU9L 4A3JL 1IW7D 2JI1A 4A3FL 5C3EL 3IU3I 2XJRA 2AYJA 1TWAL 3P8BA 2VUML 4TVMA 4AHYA 5MLC3 2CKCA 5GADc 5C4JL 5FLML 5K2ME 3S2DL 3MSUA 3VPBE 1BRFA 3RZTA 2HR5A 4AHZA 4C3JL 4A3GL 2QL0A 3MQKB 1T9OA 3RZ6A 4Y7NL 3PWFA 1B71A 3HJYB 1OWBA 3GTOL 3PIO1 1DX8A 3ZG6A 3HAXC 2C6AA 1LKOA 2JA8L 4LHNA 3KYVA 3S14L 4JAEA 2ZIXA 3KYWA 2PYAA 4POGA 1VCXA 1JYBA 2HVYC 3PO2L 3LPEB 1R9TL 2XJSA 1I50L 4A3BL 1B13A 2J9UB 4LHLA 1FHHA 3H0GL 3LWRB 1Z92B 2LCQA 4BBSL 3I4NL 1CAAA 8RXNA 2O5JD 1PZXA 1RYQA 3GTJL 3HOYL 6RXNA 3J7Y1 2VL6A 2ERSA 5IYBL 5IYCL 1I3QL 2AUSB 1BQ8A 1TWGL 3I4ML 3WWNB 2Z3RB 4C2M1
chains in the Genus database with same CATH topology
1Y1WL 4A3IL 4A3FL 5C3EL 3GTPL 3S1NL 4A93L 2PMZP 1TWAL 3S2HL 2VUML 1K83L 3M3YL 4C3HL 5C4JL 3PO3L 5FLML 2E2HL 3S2DL 3RZDL 2WAQP 5M5YL 1WCML 2NVYL 2JA7L 4C3JL 5M5XL 3S17L 4BY7L 4X6AL 3FKIL 4A3GL 5C44L 1TWFL 4A3DL 3S1ML 3S15L 4Y7NL 4BBRL 4AYBP 5M3ML 3GTOL 4BXXL 1Y1VL 3S1RL 5C4XL 1TWCL 4A3ML 3GTLL 2E2IL 4A3CL 3GTKL 3GTGL 5IP7L 2JA8L 3HOZL 3GTQL 3S14L 3S1QL 3RZOL 5IP9L 4BY1L 2R92L 4C3IL 2R93L 2NVTL 3PO2L 3GTML 4QIWP 3HOUL 1I6HL 1R9TL 1I50L 4A3BL 2NVXL 3H3VM 4A3LL 2B63L 2NVQL 3HOWL 5M3FL 3M4OL 2JA6L 3H0GL 1TWHL 2WB1P 5IYDL 2JA5L 3S16L 3CQZL 4BBSL 3I4NL 3HOXL 4A3EL 5FJ8L 1SFOL 2Y0SP 3GTJL 3HOYL 5M5WL 3HOVL 5IYBL 3K7AL 5IYCL 4Y52L 1I3QL 2E2JL 1TWGL 2R7ZL 3HKZP 3I4ML 2YU9L 4A3JL 4C2M1 4A3KL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1W L;  4A3I L;  4A3F L;  5C3E L;  3GTP L;  3S1N L;  4A93 L;  2PMZ P;  1TWA L;  3S2H L;  2VUM L;  1K83 L;  3M3Y L;  4C3H L;  5C4J L;  3PO3 L;  5FLM L;  2E2H L;  3S2D L;  3RZD L;  2WAQ P;  5M5Y L;  1WCM L;  2NVY L;  2JA7 L;  4C3J L;  5M5X L;  3S17 L;  4BY7 L;  4X6A L;  3FKI L;  4A3G L;  5C44 L;  1TWF L;  4A3D L;  3S1M L;  3S15 L;  4Y7N L;  4BBR L;  4AYB P;  5M3M L;  3GTO L;  4BXX L;  1Y1V L;  3S1R L;  5C4X L;  1TWC L;  4A3M L;  3GTL L;  2E2I L;  4A3C L;  3GTK L;  3GTG L;  5IP7 L;  2JA8 L;  3HOZ L;  3GTQ L;  3S14 L;  3S1Q L;  3RZO L;  5IP9 L;  4BY1 L;  2R92 L;  4C3I L;  2R93 L;  2NVT L;  3PO2 L;  3GTM L;  4QIW P;  3HOU L;  1I6H L;  1R9T L;  1I50 L;  4A3B L;  2NVX L;  3H3V M;  4A3L L;  2B63 L;  2NVQ L;  3HOW L;  5M3F L;  3M4O L;  2JA6 L;  3H0G L;  1TWH L;  2WB1 P;  5IYD L;  2JA5 L;  3S16 L;  3CQZ L;  4BBS L;  3I4N L;  3HOX L;  4A3E L;  5FJ8 L;  1SFO L;  2Y0S P;  3GTJ L;  3HOY L;  5M5W L;  3HOV L;  5IYB L;  3K7A L;  5IYC L;  4Y52 L;  1I3Q L;  2E2J L;  1TWG L;  2R7Z L;  3HKZ P;  3I4M L;  2YU9 L;  4A3J L;  4C2M 1;  4A3K L; 
#chains in the Genus database with same CATH topology
 4A3I L;  3LWQ B;  3GTP L;  3S1N L;  4GS7 D;  5GAE c;  1PFU A;  1K83 L;  1IRN A;  4JAG A;  4C3H L;  2XJV A;  4AI1 A;  4WFN 1;  3HJW B;  1YUX A;  2PVE A;  2A6H D;  3P2A A;  1SMM A;  2PSM C;  2NVY L;  4X6A L;  3FKI L;  5C44 L;  2B5I D;  2RFK B;  4YWL A;  4BXX L;  5C4X L;  4A3M L;  3B08 B;  4A3C L;  4U67 1;  1SMW A;  1YK4 A;  4AI0 A;  2RDV A;  4XGH A;  5GAG c;  3QVD A;  2L0Z A;  3QQC E;  3HOZ L;  1RB9 A;  1S2Z A;  5MFP A;  2DSX A;  4JAD A;  3PZA A;  1R0I A;  1R0J A;  1B2O A;  2PVX A;  2NVT L;  3GTM L;  4AR4 A;  1I6H L;  3JR7 A;  1NXE A;  3H3V M;  4A3L L;  2C6B A;  2JA6 L;  2JI2 A;  1T9P A;  3KYX A;  2WB1 P;  3CQZ L;  1F4L A;  4A3E L;  5FJ8 L;  4B8C D;  2Y0S P;  2NYD A;  4V19 6;  3FDJ A;  1OWC A;  1LKM A;  1B2J A;  4Y52 L;  1SMU A;  3LWV B;  5JVG 1;  1VZG A;  1DVB A;  4E6Y A;  4ME3 A;  2R7Z L;  5DM6 1;  4A3K L;  4ZN1 B;  1Y1W L;  2XJU A;  3J7Z 1;  3PL5 A;  5EIO C;  4AR5 A;  5GAH c;  1YK5 A;  3M3Y L;  3H99 A;  4UY8 1;  3NFP I;  1VZI A;  1RDV A;  3SS2 A;  3RZD L;  2H12 A;  2WAQ P;  5M5Y L;  4POF A;  7RXN A;  2V3B B;  3S17 L;  4AI2 A;  3KYY A;  1NNQ A;  1TWF L;  2CR8 A;  2XJT A;  3S1M L;  3S15 L;  2JI3 A;  1NXG A;  4BBR L;  4AYB P;  2PPT A;  5M3M L;  1BFY A;  1Y1V L;  3RYG A;  1TWC L;  3GTL L;  2E2I L;  1YV1 A;  1S24 A;  1PFY A;  5IP7 L;  1R0F A;  3MPS A;  3WWL A;  2GMG A;  3GTQ L;  4JAF A;  1BQ9 A;  3S1Q L;  2A69 D;  5IP9 L;  4AHW A;  3K35 A;  2K2D A;  4AI3 A;  2R93 L;  1T9Q A;  4TPU A;  1QCV A;  2M6O A;  2XJP A;  2MS3 A;  1H7V A;  2NVQ L;  3M4O L;  3LWO B;  1P7P A;  1RDG A;  4AR6 A;  2M4V A;  3PIP 1;  1TWH L;  3S16 L;  2KN9 A;  1FHM A;  5AN9 H;  5RXN A;  3H9B A;  1WJV A;  1RYT A;  4RXN A;  5M5W L;  3HOV L;  1ODH A;  5EIN C;  1PFV A;  3HKZ P;  3KYU A;  5MF6 A;  4G6B A;  1IU5 A;  1QYB A;  1E8J A;  4A93 L;  2PMZ P;  3S2H L;  2EY4 E;  2XJQ A;  2CKA A;  3PO3 L;  4XXB B;  5IY0 A;  3LNL A;  2ERJ A;  2E2H L;  1WCM L;  4K9F A;  2JA7 L;  1C09 A;  5MFZ A;  4AHX A;  5M5X L;  4BY7 L;  2AQC A;  3LWP B;  4A3D L;  1CAD A;  2A6E D;  3H9C A;  3A44 A;  3H97 A;  5MGN A;  3B0A B;  3S1R L;  1S30 A;  2BE5 D;  3GTK L;  3GTG L;  1R0G A;  1LTL A;  4ZN3 B;  3RZO L;  2KKD A;  4AR3 A;  5H1S c;  1RWD A;  4BY1 L;  2V0F A;  2R92 L;  1YUZ A;  4C3I L;  1LKP A;  4QIW P;  3HOU L;  5AI2 A;  2NVX L;  5AI3 A;  1R0H A;  1BE7 A;  2B63 L;  3HOW L;  5M3F L;  2APO B;  1VZH A;  2Z3Q B;  3PKI A;  5IYD L;  2JA5 L;  1PFW A;  3HOX L;  1ZRP A;  2M4Y A;  1SFO L;  2A68 D;  1QQT A;  4YWM A;  3K7A L;  2V0E A;  3PKJ A;  1IU6 A;  2M6P A;  5DM7 1;  2E2J L;  5JVH 1;  1IRO A;  2YU9 L;  4A3J L;  1IW7 D;  2JI1 A;  4A3F L;  5C3E L;  3IU3 I;  2XJR A;  2AYJ A;  1TWA L;  3P8B A;  2VUM L;  4TVM A;  4AHY A;  5MLC 3;  2CKC A;  5GAD c;  5C4J L;  5FLM L;  5K2M E;  3S2D L;  3MSU A;  3VPB E;  1BRF A;  3RZT A;  2HR5 A;  4AHZ A;  4C3J L;  4A3G L;  2QL0 A;  3MQK B;  1T9O A;  3RZ6 A;  4Y7N L;  3PWF A;  1B71 A;  3HJY B;  1OWB A;  3GTO L;  3PIO 1;  1DX8 A;  3ZG6 A;  3HAX C;  2C6A A;  1LKO A;  2JA8 L;  4LHN A;  3KYV A;  3S14 L;  4JAE A;  2ZIX A;  3KYW A;  2PYA A;  4POG A;  1VCX A;  1JYB A;  2HVY C;  3PO2 L;  3LPE B;  1R9T L;  2XJS A;  1I50 L;  4A3B L;  1B13 A;  2J9U B;  4LHL A;  1FHH A;  3H0G L;  3LWR B;  1Z92 B;  2LCQ A;  4BBS L;  3I4N L;  1CAA A;  8RXN A;  2O5J D;  1PZX A;  1RYQ A;  3GTJ L;  3HOY L;  6RXN A;  3J7Y 1;  2VL6 A;  2ERS A;  5IYB L;  5IYC L;  1I3Q L;  2AUS B;  1BQ8 A;  1TWG L;  3I4M L;  3WWN B;  2Z3R B;  4C2M 1; 
#chains in the Genus database with same CATH homology
 1Y1W L;  4A3I L;  4A3F L;  5C3E L;  3GTP L;  3S1N L;  4A93 L;  2PMZ P;  1TWA L;  3S2H L;  2VUM L;  1K83 L;  3M3Y L;  4C3H L;  5C4J L;  3PO3 L;  5FLM L;  2E2H L;  3S2D L;  3RZD L;  2WAQ P;  5M5Y L;  1WCM L;  2NVY L;  2JA7 L;  4C3J L;  5M5X L;  3S17 L;  4BY7 L;  4X6A L;  3FKI L;  4A3G L;  5C44 L;  1TWF L;  4A3D L;  3S1M L;  3S15 L;  4Y7N L;  4BBR L;  4AYB P;  5M3M L;  3GTO L;  4BXX L;  1Y1V L;  3S1R L;  5C4X L;  1TWC L;  4A3M L;  3GTL L;  2E2I L;  4A3C L;  3GTK L;  3GTG L;  5IP7 L;  2JA8 L;  3HOZ L;  3GTQ L;  3S14 L;  3S1Q L;  3RZO L;  5IP9 L;  4BY1 L;  2R92 L;  4C3I L;  2R93 L;  2NVT L;  3PO2 L;  3GTM L;  4QIW P;  3HOU L;  1I6H L;  1R9T L;  1I50 L;  4A3B L;  2NVX L;  3H3V M;  4A3L L;  2B63 L;  2NVQ L;  3HOW L;  5M3F L;  3M4O L;  2JA6 L;  3H0G L;  1TWH L;  2WB1 P;  5IYD L;  2JA5 L;  3S16 L;  3CQZ L;  4BBS L;  3I4N L;  3HOX L;  4A3E L;  5FJ8 L;  1SFO L;  2Y0S P;  3GTJ L;  3HOY L;  5M5W L;  3HOV L;  5IYB L;  3K7A L;  5IYC L;  4Y52 L;  1I3Q L;  2E2J L;  1TWG L;  2R7Z L;  3HKZ P;  3I4M L;  2YU9 L;  4A3J L;  4C2M 1;  4A3K L; 
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