1R0JA

Nickel-substituted rubredoxin
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.
pubmed doi rcsb
molecule tags Electron transport
source organism Clostridium pasteurianum
molecule keywords Rubredoxin
total genus 8
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2003-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1r0jA00
4AR6A 2GMGA 1R0GA 8RXNA 3RYGA 1H7VA 1RDVA 5IY0A 1RYTA 1CAAA 2HR5A 1T9QA 1E8JA 1B13A 1JYBA 1S2ZA 5AI2A 4AR3A 3RZ6A 1BQ9A 1BE7A 1LKPA 1LKOA 1YV1A 1DVBA 1RDGA 1S24A 1NNQA 1FHMA 3KYWA 3RZTA 3MPSA 1QYBA 1IROA 4TPUA 4AR5A 1R0JA 2PYAA 1R0FA 1IRNA 1QCVA 2PVEA 2PVXA 1DX8A 2V3BB 1ZRPA 1RB9A 4POFA 1T9PA 1B2JA 1C09A 1CADA 2MS3A 1T9OA 1B2OA 1SMWA 5RXNA 5AI3A 2M4YA 2DSXA 4K9FA 1LKMA 1SMMA 3PZAA 1YK5A 1B71A 1FHHA 1YK4A 1BRFA 1YUXA 1R0HA 3KYYA 7RXNA 3PWFA 1VCXA 4POGA 1IU5A 4RXNA 1YUZA 4ME3A 3KYUA 3QVDA 4YWLA 2K2DA 1RWDA 3SS2A 1BFYA 6RXNA 1S30A 1BQ8A 2QL0A 3KYXA 2KN9A 3KYVA 4YWMA 1R0IA 2VL6A 2LCQA 1IU6A 2RDVA 1LTLA 4AR4A 1SMUA 3A44A 2KKDA
chains in the Genus database with same CATH superfamily
4AR6A 1R9TL 4A3JL 3RYGA 1RDVA 2XJQA 4UY81 1RYTA 2HR5A 5C4XL 2BE5D 1S2ZA 5MLC3 1BQ9A 2M6OA 3J7Y1 5JVG1 1LKOA 1DVBA 1RDGA 4G6BA 3KYWA 4AI2A 1OWCA 1VZGA 3MPSA 3H0GL 5M5XL 4TPUA 4XGHA 2ZIXA 4U671 4A3ML 5H1Sc 4B8CD 2NVTL 2PVEA 1P7PA 3RZOL 5IYBL 3PIP1 2XJUA 5DM61 1B2OA 3H97A 4AHZA 5GAGc 2JA6L 4A3IL 3PZAA 2JI2A 1YK5A 1B71A 3PL5A 2HVYC 3P2AA 1YUXA 1R0HA 2JA7L 3HOWL 5AN9H 3PWFA 2E2JL 4POGA 1IU5A 2AQCA 5GAHc 3M3YL 3QVDA 2K2DA 1PFYA 2XJRA 1RWDA 2R7ZL 4AHWA 4AI3A 4YWMA 2B5ID 3CQZL 1OWBA 2VL6A 4JAEA 2LCQA 2PSMC 1LTLA 3HKZP 5M5WL 4AR4A 1SMUA 2KKDA 2Z3RB 3P8BA 3PIO1 2GMGA 1R0GA 4A3BL 1NXEA 1H7VA 5IY0A 2XJPA 1CAAA 1I3QL 2WAQP 2O5JD 1E8JA 5AI2A 3MQKB 4AR3A 2V0EA 3S15L 5C4JL 1LKPA 4X6AL 5K2ME 3LPEB 3S1NL 3HOXL 1PFWA 3S1QL 5IP9L 1QYBA 1IROA 2JI3A 1R0FA 3FKIL 1IRNA 1QCVA 2PVXA 1TWCL 3I4ML 3LWQB 1RB9A 4A3DL 4POFA 1B2JA 1C09A 2XJTA 4A3CL 3MSUA 2NVXL 2DSXA 2M4YA 1LKMA 1SMMA 2WB1P 4BBRL 3B08B 2NVYL 2Y0SP 5IP7L 3GTOL 3RZDL 1FHHA 1BRFA 2M4VA 3KYYA 3QQCE 1YUZA 3WWLA 4ME3A 5FJ8L 3HOUL 3H9CA 2JA5L 4YWLA 2A68D 3GTGL 3HJWB 4AYBP 4BY7L 2KN9A 4AHYA 1R0IA 5JVH1 3K35A 1PZXA 4LHNA 2NVQL 1IU6A 2E2HL 4BBSL 3A44A 2CKCA 2XJVA 2JI1A 5IYDL 5FLML 3HOYL 1TWFL 2R92L 1TWHL 3HOVL 3S17L 4A3FL 1VZHA 1B13A 5C3EL 1IW7D 3FDJA 1BE7A 1YV1A 3ZG6A 1NXGA 5M3ML 2H12A 2R93L 3LNLA 4AI0A 3JR7A 4C2M1 4AHXA 2B63L 2PMZP 1R0JA 3S16L 2PPTA 2PYAA 4BY1L 4JAFA 2L0ZA 1K83L 3LWPB 3HAXC 4ZN3B 4WFN1 4LHLA 1CADA 4A3EL 5AI3A 4K9FA 3LWOB 3GTQL 3S1RL 3GTML 3S2HL 3LWVB 1Y1WL 4XXBB 2XJSA 1WCML 3S14L 3B0AB 4Y7NL 3K7AL 1VCXA 4RXNA 1Z92B 1I6HL 5EINC 2AYJA 3GTLL 5IYCL 4A93L 3SS2A 5M3FL 2M6PA 2VUML 1BQ8A 2QL0A 3KYXA 5MFZA 3IU3I 3H99A 4GS7D 2V0FA 1Y1VL 2A6HD 2RDVA 2E2IL 2AUSB 2ERSA 3GTJL 1TWAL 3VPBE 1PFVA 3H3VM 8RXNA 2ERJA 2A69D 3NFPI 2APOB 4TVMA 4C3JL 1T9QA 4C3HL 1JYBA 3RZ6A 4AI1A 3HJYB 2C6AA 3GTPL 3LWRB 1S24A 5MF6A 1NNQA 1FHMA 3WWNB 1SFOL 3RZTA 5DM71 3HOZL 3S2DL 4AR5A 5MGNA 4QIWP 3PO2L 4V196 2JA8L 2Z3QB 1DX8A 2V3BB 1I50L 1ZRPA 4A3GL 1T9PA 2A6ED 5GADc 2MS3A 5EIOC 1RYQA 1T9OA 1SMWA 3PKIA 5RXNA 3I4NL 3PKJA 3S1ML 1ODHA 2YU9L 1WJVA 5GAEc 1TWGL 4A3LL 5M5YL 1F4LA 2CR8A 2CKAA 1YK4A 3H9BA 1PFUA 7RXNA 4JADA 3M4OL 4A3KL 3KYUA 4JAGA 3GTKL 2EY4E 2NYDA 4BXXL 1BFYA 4C3IL 6RXNA 5MFPA 1S30A 4ZN1B 2J9UB 3KYVA 3J7Z1 3PO3L 1VZIA 1QQTA 5C44L 2RFKB 4Y52L 2C6BA 4E6YA
chains in the Genus database with same CATH topology
4AR6A 2GMGA 1R0GA 8RXNA 1NXEA 2XJVA 3RYGA 2ERJA 2JI1A 1H7VA 1RDVA 5IY0A 2A69D 2XJQA 3NFPI 4UY81 4TVMA 1RYTA 2XJPA 1CAAA 2HR5A 1VZHA 2O5JD 1T9QA 2BE5D 1E8JA 1B13A 1JYBA 1S2ZA 5AI2A 5MLC3 4AR3A 2V0EA 3RZ6A 1BQ9A 1IW7D 1BE7A 4AI1A 2C6AA 1LKPA 2M6OA 3J7Y1 5K2ME 3LPEB 5JVG1 1LKOA 1YV1A 3ZG6A 1NXGA 1DVBA 1RDGA 1S24A 2H12A 4G6BA 5MF6A 1NNQA 1FHMA 3LNLA 3WWNB 3KYWA 3RZTA 4AI2A 4AI0A 5DM71 1OWCA 1VZGA 3MPSA 4AHXA 1QYBA 1IROA 2JI3A 4TPUA 4AR5A 5MGNA 4XGHA 2ZIXA 1R0JA 2PPTA 2PYAA 1R0FA 4U671 4V196 1IRNA 1QCVA 4B8CD 4JAFA 2Z3QB 2PVEA 2L0ZA 2PVXA 5H1Sc 1DX8A 2V3BB 1ZRPA 4ZN3B 1RB9A 4WFN1 4POFA 1T9PA 3PIP1 2XJUA 2A6ED 5DM61 1B2JA 4LHLA 5GADc 1C09A 1CADA 2XJTA 2MS3A 5EIOC 1RYQA 1B2OA 1SMWA 1T9OA 3MSUA 3PKIA 5RXNA 2DSXA 2M4YA 4K9FA 3PKJA 1LKMA 5AI3A 4AHZA 1SMMA 1ODHA 5GAGc 1WJVA 5GAEc 3B08B 3PZAA 2JI2A 1YK5A 1B71A 4XXBB 3P2AA 2XJSA 2CR8A 1FHHA 2CKAA 1YK4A 1BRFA 3B0AB 1YUXA 1R0HA 2M4VA 3KYYA 3QQCE 5AN9H 7RXNA 3PWFA 4JADA 1VCXA 4POGA 1IU5A 4RXNA 1YUZA 1Z92B 5EINC 3WWLA 4ME3A 5GAHc 2AYJA 3KYUA 3QVDA 4JAGA 4YWLA 2K2DA 2A68D 1RWDA 2NYDA 2XJRA 3SS2A 1BFYA 2M6PA 4AHWA 6RXNA 5MFPA 1S30A 1BQ8A 2QL0A 4ZN1B 3KYXA 2J9UB 5MFZA 2KN9A 3KYVA 3J7Z1 4AI3A 4YWMA 2B5ID 4AHYA 1R0IA 5JVH1 3IU3I 3K35A 1VZIA 4GS7D 2V0FA 4LHNA 1OWBA 2VL6A 4JAEA 2LCQA 1IU6A 2A6HD 2PSMC 2RDVA 1LTLA 2C6BA 2ERSA 4AR4A 4E6YA 1SMUA 3A44A 2KKDA 2CKCA 2Z3RB 3VPBE 3P8BA 3PIO1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AR6 A;  2GMG A;  1R0G A;  8RXN A;  3RYG A;  1H7V A;  1RDV A;  5IY0 A;  1RYT A;  1CAA A;  2HR5 A;  1T9Q A;  1E8J A;  1B13 A;  1JYB A;  1S2Z A;  5AI2 A;  4AR3 A;  3RZ6 A;  1BQ9 A;  1BE7 A;  1LKP A;  1LKO A;  1YV1 A;  1DVB A;  1RDG A;  1S24 A;  1NNQ A;  1FHM A;  3KYW A;  3RZT A;  3MPS A;  1QYB A;  1IRO A;  4TPU A;  4AR5 A;  1R0J A;  2PYA A;  1R0F A;  1IRN A;  1QCV A;  2PVE A;  2PVX A;  1DX8 A;  2V3B B;  1ZRP A;  1RB9 A;  4POF A;  1T9P A;  1B2J A;  1C09 A;  1CAD A;  2MS3 A;  1T9O A;  1B2O A;  1SMW A;  5RXN A;  5AI3 A;  2M4Y A;  2DSX A;  4K9F A;  1LKM A;  1SMM A;  3PZA A;  1YK5 A;  1B71 A;  1FHH A;  1YK4 A;  1BRF A;  1YUX A;  1R0H A;  3KYY A;  7RXN A;  3PWF A;  1VCX A;  4POG A;  1IU5 A;  4RXN A;  1YUZ A;  4ME3 A;  3KYU A;  3QVD A;  4YWL A;  2K2D A;  1RWD A;  3SS2 A;  1BFY A;  6RXN A;  1S30 A;  1BQ8 A;  2QL0 A;  3KYX A;  2KN9 A;  3KYV A;  4YWM A;  1R0I A;  2VL6 A;  2LCQ A;  1IU6 A;  2RDV A;  1LTL A;  4AR4 A;  1SMU A;  3A44 A;  2KKD A; 
#chains in the Genus database with same CATH topology
 4AR6 A;  1R9T L;  4A3J L;  3RYG A;  1RDV A;  2XJQ A;  4UY8 1;  1RYT A;  2HR5 A;  5C4X L;  2BE5 D;  1S2Z A;  5MLC 3;  1BQ9 A;  2M6O A;  3J7Y 1;  5JVG 1;  1LKO A;  1DVB A;  1RDG A;  4G6B A;  3KYW A;  4AI2 A;  1OWC A;  1VZG A;  3MPS A;  3H0G L;  5M5X L;  4TPU A;  4XGH A;  2ZIX A;  4U67 1;  4A3M L;  5H1S c;  4B8C D;  2NVT L;  2PVE A;  1P7P A;  3RZO L;  5IYB L;  3PIP 1;  2XJU A;  5DM6 1;  1B2O A;  3H97 A;  4AHZ A;  5GAG c;  2JA6 L;  4A3I L;  3PZA A;  2JI2 A;  1YK5 A;  1B71 A;  3PL5 A;  2HVY C;  3P2A A;  1YUX A;  1R0H A;  2JA7 L;  3HOW L;  5AN9 H;  3PWF A;  2E2J L;  4POG A;  1IU5 A;  2AQC A;  5GAH c;  3M3Y L;  3QVD A;  2K2D A;  1PFY A;  2XJR A;  1RWD A;  2R7Z L;  4AHW A;  4AI3 A;  4YWM A;  2B5I D;  3CQZ L;  1OWB A;  2VL6 A;  4JAE A;  2LCQ A;  2PSM C;  1LTL A;  3HKZ P;  5M5W L;  4AR4 A;  1SMU A;  2KKD A;  2Z3R B;  3P8B A;  3PIO 1;  2GMG A;  1R0G A;  4A3B L;  1NXE A;  1H7V A;  5IY0 A;  2XJP A;  1CAA A;  1I3Q L;  2WAQ P;  2O5J D;  1E8J A;  5AI2 A;  3MQK B;  4AR3 A;  2V0E A;  3S15 L;  5C4J L;  1LKP A;  4X6A L;  5K2M E;  3LPE B;  3S1N L;  3HOX L;  1PFW A;  3S1Q L;  5IP9 L;  1QYB A;  1IRO A;  2JI3 A;  1R0F A;  3FKI L;  1IRN A;  1QCV A;  2PVX A;  1TWC L;  3I4M L;  3LWQ B;  1RB9 A;  4A3D L;  4POF A;  1B2J A;  1C09 A;  2XJT A;  4A3C L;  3MSU A;  2NVX L;  2DSX A;  2M4Y A;  1LKM A;  1SMM A;  2WB1 P;  4BBR L;  3B08 B;  2NVY L;  2Y0S P;  5IP7 L;  3GTO L;  3RZD L;  1FHH A;  1BRF A;  2M4V A;  3KYY A;  3QQC E;  1YUZ A;  3WWL A;  4ME3 A;  5FJ8 L;  3HOU L;  3H9C A;  2JA5 L;  4YWL A;  2A68 D;  3GTG L;  3HJW B;  4AYB P;  4BY7 L;  2KN9 A;  4AHY A;  1R0I A;  5JVH 1;  3K35 A;  1PZX A;  4LHN A;  2NVQ L;  1IU6 A;  2E2H L;  4BBS L;  3A44 A;  2CKC A;  2XJV A;  2JI1 A;  5IYD L;  5FLM L;  3HOY L;  1TWF L;  2R92 L;  1TWH L;  3HOV L;  3S17 L;  4A3F L;  1VZH A;  1B13 A;  5C3E L;  1IW7 D;  3FDJ A;  1BE7 A;  1YV1 A;  3ZG6 A;  1NXG A;  5M3M L;  2H12 A;  2R93 L;  3LNL A;  4AI0 A;  3JR7 A;  4C2M 1;  4AHX A;  2B63 L;  2PMZ P;  1R0J A;  3S16 L;  2PPT A;  2PYA A;  4BY1 L;  4JAF A;  2L0Z A;  1K83 L;  3LWP B;  3HAX C;  4ZN3 B;  4WFN 1;  4LHL A;  1CAD A;  4A3E L;  5AI3 A;  4K9F A;  3LWO B;  3GTQ L;  3S1R L;  3GTM L;  3S2H L;  3LWV B;  1Y1W L;  4XXB B;  2XJS A;  1WCM L;  3S14 L;  3B0A B;  4Y7N L;  3K7A L;  1VCX A;  4RXN A;  1Z92 B;  1I6H L;  5EIN C;  2AYJ A;  3GTL L;  5IYC L;  4A93 L;  3SS2 A;  5M3F L;  2M6P A;  2VUM L;  1BQ8 A;  2QL0 A;  3KYX A;  5MFZ A;  3IU3 I;  3H99 A;  4GS7 D;  2V0F A;  1Y1V L;  2A6H D;  2RDV A;  2E2I L;  2AUS B;  2ERS A;  3GTJ L;  1TWA L;  3VPB E;  1PFV A;  3H3V M;  8RXN A;  2ERJ A;  2A69 D;  3NFP I;  2APO B;  4TVM A;  4C3J L;  1T9Q A;  4C3H L;  1JYB A;  3RZ6 A;  4AI1 A;  3HJY B;  2C6A A;  3GTP L;  3LWR B;  1S24 A;  5MF6 A;  1NNQ A;  1FHM A;  3WWN B;  1SFO L;  3RZT A;  5DM7 1;  3HOZ L;  3S2D L;  4AR5 A;  5MGN A;  4QIW P;  3PO2 L;  4V19 6;  2JA8 L;  2Z3Q B;  1DX8 A;  2V3B B;  1I50 L;  1ZRP A;  4A3G L;  1T9P A;  2A6E D;  5GAD c;  2MS3 A;  5EIO C;  1RYQ A;  1T9O A;  1SMW A;  3PKI A;  5RXN A;  3I4N L;  3PKJ A;  3S1M L;  1ODH A;  2YU9 L;  1WJV A;  5GAE c;  1TWG L;  4A3L L;  5M5Y L;  1F4L A;  2CR8 A;  2CKA A;  1YK4 A;  3H9B A;  1PFU A;  7RXN A;  4JAD A;  3M4O L;  4A3K L;  3KYU A;  4JAG A;  3GTK L;  2EY4 E;  2NYD A;  4BXX L;  1BFY A;  4C3I L;  6RXN A;  5MFP A;  1S30 A;  4ZN1 B;  2J9U B;  3KYV A;  3J7Z 1;  3PO3 L;  1VZI A;  1QQT A;  5C44 L;  2RFK B;  4Y52 L;  2C6B A;  4E6Y A; 
#chains in the Genus database with same CATH homology
 4AR6 A;  2GMG A;  1R0G A;  8RXN A;  1NXE A;  2XJV A;  3RYG A;  2ERJ A;  2JI1 A;  1H7V A;  1RDV A;  5IY0 A;  2A69 D;  2XJQ A;  3NFP I;  4UY8 1;  4TVM A;  1RYT A;  2XJP A;  1CAA A;  2HR5 A;  1VZH A;  2O5J D;  1T9Q A;  2BE5 D;  1E8J A;  1B13 A;  1JYB A;  1S2Z A;  5AI2 A;  5MLC 3;  4AR3 A;  2V0E A;  3RZ6 A;  1BQ9 A;  1IW7 D;  1BE7 A;  4AI1 A;  2C6A A;  1LKP A;  2M6O A;  3J7Y 1;  5K2M E;  3LPE B;  5JVG 1;  1LKO A;  1YV1 A;  3ZG6 A;  1NXG A;  1DVB A;  1RDG A;  1S24 A;  2H12 A;  4G6B A;  5MF6 A;  1NNQ A;  1FHM A;  3LNL A;  3WWN B;  3KYW A;  3RZT A;  4AI2 A;  4AI0 A;  5DM7 1;  1OWC A;  1VZG A;  3MPS A;  4AHX A;  1QYB A;  1IRO A;  2JI3 A;  4TPU A;  4AR5 A;  5MGN A;  4XGH A;  2ZIX A;  1R0J A;  2PPT A;  2PYA A;  1R0F A;  4U67 1;  4V19 6;  1IRN A;  1QCV A;  4B8C D;  4JAF A;  2Z3Q B;  2PVE A;  2L0Z A;  2PVX A;  5H1S c;  1DX8 A;  2V3B B;  1ZRP A;  4ZN3 B;  1RB9 A;  4WFN 1;  4POF A;  1T9P A;  3PIP 1;  2XJU A;  2A6E D;  5DM6 1;  1B2J A;  4LHL A;  5GAD c;  1C09 A;  1CAD A;  2XJT A;  2MS3 A;  5EIO C;  1RYQ A;  1B2O A;  1SMW A;  1T9O A;  3MSU A;  3PKI A;  5RXN A;  2DSX A;  2M4Y A;  4K9F A;  3PKJ A;  1LKM A;  5AI3 A;  4AHZ A;  1SMM A;  1ODH A;  5GAG c;  1WJV A;  5GAE c;  3B08 B;  3PZA A;  2JI2 A;  1YK5 A;  1B71 A;  4XXB B;  3P2A A;  2XJS A;  2CR8 A;  1FHH A;  2CKA A;  1YK4 A;  1BRF A;  3B0A B;  1YUX A;  1R0H A;  2M4V A;  3KYY A;  3QQC E;  5AN9 H;  7RXN A;  3PWF A;  4JAD A;  1VCX A;  4POG A;  1IU5 A;  4RXN A;  1YUZ A;  1Z92 B;  5EIN C;  3WWL A;  4ME3 A;  5GAH c;  2AYJ A;  3KYU A;  3QVD A;  4JAG A;  4YWL A;  2K2D A;  2A68 D;  1RWD A;  2NYD A;  2XJR A;  3SS2 A;  1BFY A;  2M6P A;  4AHW A;  6RXN A;  5MFP A;  1S30 A;  1BQ8 A;  2QL0 A;  4ZN1 B;  3KYX A;  2J9U B;  5MFZ A;  2KN9 A;  3KYV A;  3J7Z 1;  4AI3 A;  4YWM A;  2B5I D;  4AHY A;  1R0I A;  5JVH 1;  3IU3 I;  3K35 A;  1VZI A;  4GS7 D;  2V0F A;  4LHN A;  1OWB A;  2VL6 A;  4JAE A;  2LCQ A;  1IU6 A;  2A6H D;  2PSM C;  2RDV A;  1LTL A;  2C6B A;  2ERS A;  4AR4 A;  4E6Y A;  1SMU A;  3A44 A;  2KKD A;  2CKC A;  2Z3R B;  3VPB E;  3P8B A;  3PIO 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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