1RB9A

Rubredoxin from desulfovibrio vulgaris refined anisotropically at 0.92 angstroms resolution
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
51
structure length
51
Chain Sequence
KKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (49-51)S2 (12-13)S1 (4-6)TIV1 (6-9)TI1 (7-10)3H4 (46-48)TII1 (25-28)3H3 (30-32)TI3 (39-42)TI4 (40-43)3H2 (20-22)3H1 (15-17)TI2 (34-37)Updating...
connected with : NaN
molecule tags Iron-sulfur protein
source organism Desulfovibrio vulgaris subsp. vulgaris str. hildenborough
publication title Anisotropic Refinement of Rubredoxin from Desulfovibrio Vulgaris
rcsb
molecule keywords RUBREDOXIN
total genus 8
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1997-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1rb9A00
1LKPA 4AR4A 3KYVA 1YUXA 1B71A 2K2DA 2MS3A 1R0GA 3SS2A 4YWLA 2HR5A 1CADA 1RDGA 2VL6A 7RXNA 2PVEA 2QL0A 2PYAA 1YV1A 1YUZA 8RXNA 1R0FA 4POFA 3A44A 1BE7A 5RXNA 1BFYA 1SMUA 1LKMA 3RZ6A 1R0JA 3KYWA 1S30A 1NNQA 1SMMA 1DVBA 1RWDA 3PZAA 1RB9A 1R0IA 2LCQA 1QYBA 4K9FA 3RZTA 3KYYA 5AI2A 1LKOA 1E8JA 6RXNA 4AR6A 2RDVA 1B2JA 1LTLA 1C09A 2KN9A 1B2OA 2DSXA 2V3BB 1R0HA 4AR3A 1IU6A 1YK4A 1S2ZA 1BQ8A 1YK5A 3MPSA 4AR5A 1B13A 1SMWA 1RDVA 2KKDA 4RXNA 1JYBA 5AI3A 2GMGA 4ME3A 4YWMA 1VCXA 1IRNA 1BQ9A 1CAAA 2M4YA 4POGA 1RYTA 1S24A 3KYUA 3KYXA 1QCVA 1DX8A 3QVDA 1ZRPA 1T9PA 3PWFA 1T9QA 1IU5A 3RYGA 4TPUA 1FHHA 5IY0A 1H7VA 1IROA 2PVXA 1FHMA 1T9OA 1BRFA
chains in the Genus database with same CATH superfamily
4AR4A 1PFUA 4BBRL 1YUXA 3RZDL 1VZIA 4GS7D 2NVXL 4AHXA 2AUSB 1I50L 2PVEA 5DM71 1R9TL 2XJTA 1I6HL 2VUML 4A3GL 1BE7A 2A6ED 5M3ML 3J7Z1 2ERJA 4AI3A 4TVMA 3PO3L 1R0JA 3KYWA 1VZGA 5H1Sc 1NNQA 4LHLA 3M3YL 3PKJA 2B63L 1DVBA 1RWDA 2ERSA 5EINC 1RB9A 1R0IA 1Y1WL 5GAGc 3K35A 4K9FA 3PO2L 3RZTA 2JI3A 4AR6A 1IW7D 4AHYA 1PZXA 2XJRA 4QIWP 2L0ZA 5M5YL 4JAGA 5EIOC 1R0HA 2Z3QB 2NVTL 3P8BA 2Z3RB 3H0GL 4JAEA 4LHNA 2M6OA 1YK5A 4AHZA 1B13A 2M6PA 1RDVA 3H99A 2XJVA 4RXNA 3HKZP 1NXEA 3ZG6A 2GMGA 1IRNA 3PKIA 3S1QL 2A68D 1OWCA 2XJPA 4AYBP 3H3VM 1S24A 1WJVA 3KYXA 3GTOL 3CQZL 2AQCA 1T9PA 3PWFA 1IU5A 3RYGA 5IY0A 4B8CD 1IROA 2PVXA 3S16L 2E2HL 1BRFA 1TWFL 1LKPA 2Y0SP 3HOYL 5M5WL 3SS2A 4C3IL 3I4NL 1RDGA 5IYBL 2JI2A 2R7ZL 2PYAA 1I3QL 4WFN1 3A44A 5C4JL 3HOZL 4BY7L 5RXNA 2V0EA 3VPBE 1PFVA 1SMUA 1LKMA 2BE5D 2YU9L 1RYQA 2RFKB 5MF6A 2HVYC 2JA7L 3FKIL 3S15L 4A3FL 2C6BA 1E8JA 3JR7A 3RZOL 2XJSA 2APOB 3HJWB 1LTLA 1C09A 2A69D 5IP7L 1B2OA 2DSXA 3HOWL 4A3EL 3GTML 4A3JL 2E2IL 1BQ8A 1QQTA 1P7PA 3MQKB 1SMWA 3HOXL 5MLC3 1JYBA 2JA6L 2JA8L 2XJQA 4ME3A 2WB1P 1TWHL 2R92L 3WWLA 1Z92B 2CR8A 2XJUA 3GTLL 5JVG1 1TWGL 1T9QA 1OWBA 1K83L 4TPUA 1FHHA 3B08B 5IP9L 3H9CA 4Y7NL 5C44L 3KYVA 4JAFA 1B71A 2MS3A 4V196 2PMZP 1WCML 4YWLA 5M3FL 5MFPA 2VL6A 2NYDA 2QL0A 3PL5A 5FLML 2A6HD 4A3LL 2C6AA 8RXNA 1R0FA 4POFA 3GTPL 4ZN1B 2PSMC 2J9UB 4AHWA 4ZN3B 5C3EL 1SMMA 3LWRB 3PZAA 3S1NL 2LCQA 1QYBA 2NVYL 3I4ML 4AI2A 3KYYA 4A93L 1LKOA 3IU3I 3GTQL 5MFZA 6RXNA 3P2AA 2RDVA 1PFWA 3MSUA 3S2DL 3LWOB 5C4XL 5AN9H 3HAXC 3S1ML 2KN9A 3S1RL 4UY81 3S2HL 3J7Y1 2WAQP 2V3BB 1ODHA 4AR3A 4X6AL 1YK4A 1S2ZA 4C3JL 3LWPB 4AI1A 2M4VA 4XXBB 4C3HL 2KKDA 3QQCE 3GTGL 5GAHc 3H97A 1VCXA 2E2JL 2JA5L 1SFOL 1CAAA 4POGA 4A3DL 3KYUA 1DX8A 2JI1A 1QCVA 5IYCL 3B0AB 2ZIXA 3K7AL 3GTJL 1PFYA 4BBSL 4BXXL 1TWAL 1FHMA 2EY4E 2CKCA 2AYJA 3LWVB 1Y1VL 2K2DA 4A3IL 1R0GA 2CKAA 2O5JD 4G6BA 2HR5A 1VZHA 1CADA 2V0FA 7RXNA 5M5XL 4E6YA 1YV1A 1YUZA 5GAEc 1BFYA 5GADc 3HOUL 5FJ8L 3RZ6A 1S30A 3LPEB 2R93L 3NFPI 4AI0A 5AI2A 3S17L 1NXGA 3HJYB 3PIP1 4A3CL 2PPTA 3WWNB 3GTKL 1B2JA 4A3BL 3HOVL 4BY1L 5DM61 3S14L 1IU6A 4XGHA 4A3KL 3H9BA 3LNLA 3MPSA 5IYDL 4AR5A 3FDJA 2NVQL 4U671 5AI3A 4YWMA 1TWCL 4JADA 1BQ9A 3LWQB 4C2M1 2M4YA 1RYTA 2H12A 2B5ID 3QVDA 3PIO1 4Y52L 1ZRPA 4A3ML 5K2ME 1H7VA 1T9OA 1F4LA 5MGNA 5JVH1 3M4OL
chains in the Genus database with same CATH topology
1LKPA 4AR4A 3KYVA 2AYJA 4JAFA 1YUXA 1B71A 2K2DA 2MS3A 4V196 1VZIA 1R0GA 3SS2A 2CKAA 2O5JD 4GS7D 4G6BA 4YWLA 2HR5A 4AHXA 1VZHA 5MFPA 1CADA 1RDGA 2JI2A 2V0FA 2VL6A 7RXNA 2NYDA 2PVEA 2QL0A 5DM71 2A6HD 2PYAA 2XJTA 4E6YA 1YV1A 4WFN1 1YUZA 2C6AA 5GAEc 8RXNA 1R0FA 4POFA 3A44A 1BE7A 2A6ED 4ZN1B 3J7Z1 2PSMC 2ERJA 2J9UB 2V0EA 3VPBE 4AI3A 5RXNA 1BFYA 1SMUA 4TVMA 5GADc 4AHWA 1LKMA 2BE5D 3RZ6A 4ZN3B 1R0JA 1RYQA 1S30A 1VZGA 3KYWA 5H1Sc 1NNQA 3LPEB 1SMMA 4LHLA 5MF6A 3PKJA 1DVBA 1RWDA 2ERSA 3PZAA 5EINC 1RB9A 1R0IA 2LCQA 1QYBA 5GAGc 3K35A 4K9FA 3NFPI 4AI2A 3RZTA 2C6BA 4AI0A 3KYYA 5AI2A 1LKOA 3IU3I 2JI3A 5MFZA 1E8JA 6RXNA 3P2AA 4AR6A 2RDVA 1NXGA 3MSUA 1IW7D 3PIP1 4AHYA 2PPTA 3WWNB 2XJSA 1B2JA 2XJRA 2L0ZA 1LTLA 1C09A 5AN9H 2A69D 2KN9A 4UY81 4JAGA 1B2OA 2DSXA 3J7Y1 2V3BB 5DM61 1ODHA 5EIOC 1R0HA 4AR3A 2Z3QB 1IU6A 4XGHA 3P8BA 1YK4A 1S2ZA 2Z3RB 4JAEA 4LHNA 2M6OA 4AI1A 1BQ8A 1YK5A 3LNLA 2M4VA 4AHZA 3MPSA 4AR5A 1B13A 1SMWA 2M6PA 1RDVA 4XXBB 2KKDA 3QQCE 2XJVA 4RXNA 1JYBA 5MLC3 2XJQA 4U671 1NXEA 5AI3A 2GMGA 3ZG6A 4ME3A 4YWMA 5GAHc 1VCXA 1IRNA 4JADA 3PKIA 1BQ9A 2A68D 1OWCA 2XJPA 1CAAA 2M4YA 4POGA 1RYTA 1S24A 2H12A 1WJVA 1QCVA 2JI1A 3KYXA 3KYUA 1DX8A 2B5ID 3QVDA 3WWLA 3PIO1 3B0AB 1Z92B 2CR8A 2XJUA 2ZIXA 1ZRPA 5JVG1 1T9PA 5K2ME 3PWFA 1T9QA 1IU5A 1OWBA 3RYGA 4TPUA 1FHHA 5IY0A 4B8CD 3B08B 1H7VA 1IROA 2PVXA 1FHMA 1T9OA 1BRFA 5MGNA 2CKCA 5JVH1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LKP A;  4AR4 A;  3KYV A;  1YUX A;  1B71 A;  2K2D A;  2MS3 A;  1R0G A;  3SS2 A;  4YWL A;  2HR5 A;  1CAD A;  1RDG A;  2VL6 A;  7RXN A;  2PVE A;  2QL0 A;  2PYA A;  1YV1 A;  1YUZ A;  8RXN A;  1R0F A;  4POF A;  3A44 A;  1BE7 A;  5RXN A;  1BFY A;  1SMU A;  1LKM A;  3RZ6 A;  1R0J A;  3KYW A;  1S30 A;  1NNQ A;  1SMM A;  1DVB A;  1RWD A;  3PZA A;  1RB9 A;  1R0I A;  2LCQ A;  1QYB A;  4K9F A;  3RZT A;  3KYY A;  5AI2 A;  1LKO A;  1E8J A;  6RXN A;  4AR6 A;  2RDV A;  1B2J A;  1LTL A;  1C09 A;  2KN9 A;  1B2O A;  2DSX A;  2V3B B;  1R0H A;  4AR3 A;  1IU6 A;  1YK4 A;  1S2Z A;  1BQ8 A;  1YK5 A;  3MPS A;  4AR5 A;  1B13 A;  1SMW A;  1RDV A;  2KKD A;  4RXN A;  1JYB A;  5AI3 A;  2GMG A;  4ME3 A;  4YWM A;  1VCX A;  1IRN A;  1BQ9 A;  1CAA A;  2M4Y A;  4POG A;  1RYT A;  1S24 A;  3KYU A;  3KYX A;  1QCV A;  1DX8 A;  3QVD A;  1ZRP A;  1T9P A;  3PWF A;  1T9Q A;  1IU5 A;  3RYG A;  4TPU A;  1FHH A;  5IY0 A;  1H7V A;  1IRO A;  2PVX A;  1FHM A;  1T9O A;  1BRF A; 
#chains in the Genus database with same CATH topology
 4AR4 A;  1PFU A;  4BBR L;  1YUX A;  3RZD L;  1VZI A;  4GS7 D;  2NVX L;  4AHX A;  2AUS B;  1I50 L;  2PVE A;  5DM7 1;  1R9T L;  2XJT A;  1I6H L;  2VUM L;  4A3G L;  1BE7 A;  2A6E D;  5M3M L;  3J7Z 1;  2ERJ A;  4AI3 A;  4TVM A;  3PO3 L;  1R0J A;  3KYW A;  1VZG A;  5H1S c;  1NNQ A;  4LHL A;  3M3Y L;  3PKJ A;  2B63 L;  1DVB A;  1RWD A;  2ERS A;  5EIN C;  1RB9 A;  1R0I A;  1Y1W L;  5GAG c;  3K35 A;  4K9F A;  3PO2 L;  3RZT A;  2JI3 A;  4AR6 A;  1IW7 D;  4AHY A;  1PZX A;  2XJR A;  4QIW P;  2L0Z A;  5M5Y L;  4JAG A;  5EIO C;  1R0H A;  2Z3Q B;  2NVT L;  3P8B A;  2Z3R B;  3H0G L;  4JAE A;  4LHN A;  2M6O A;  1YK5 A;  4AHZ A;  1B13 A;  2M6P A;  1RDV A;  3H99 A;  2XJV A;  4RXN A;  3HKZ P;  1NXE A;  3ZG6 A;  2GMG A;  1IRN A;  3PKI A;  3S1Q L;  2A68 D;  1OWC A;  2XJP A;  4AYB P;  3H3V M;  1S24 A;  1WJV A;  3KYX A;  3GTO L;  3CQZ L;  2AQC A;  1T9P A;  3PWF A;  1IU5 A;  3RYG A;  5IY0 A;  4B8C D;  1IRO A;  2PVX A;  3S16 L;  2E2H L;  1BRF A;  1TWF L;  1LKP A;  2Y0S P;  3HOY L;  5M5W L;  3SS2 A;  4C3I L;  3I4N L;  1RDG A;  5IYB L;  2JI2 A;  2R7Z L;  2PYA A;  1I3Q L;  4WFN 1;  3A44 A;  5C4J L;  3HOZ L;  4BY7 L;  5RXN A;  2V0E A;  3VPB E;  1PFV A;  1SMU A;  1LKM A;  2BE5 D;  2YU9 L;  1RYQ A;  2RFK B;  5MF6 A;  2HVY C;  2JA7 L;  3FKI L;  3S15 L;  4A3F L;  2C6B A;  1E8J A;  3JR7 A;  3RZO L;  2XJS A;  2APO B;  3HJW B;  1LTL A;  1C09 A;  2A69 D;  5IP7 L;  1B2O A;  2DSX A;  3HOW L;  4A3E L;  3GTM L;  4A3J L;  2E2I L;  1BQ8 A;  1QQT A;  1P7P A;  3MQK B;  1SMW A;  3HOX L;  5MLC 3;  1JYB A;  2JA6 L;  2JA8 L;  2XJQ A;  4ME3 A;  2WB1 P;  1TWH L;  2R92 L;  3WWL A;  1Z92 B;  2CR8 A;  2XJU A;  3GTL L;  5JVG 1;  1TWG L;  1T9Q A;  1OWB A;  1K83 L;  4TPU A;  1FHH A;  3B08 B;  5IP9 L;  3H9C A;  4Y7N L;  5C44 L;  3KYV A;  4JAF A;  1B71 A;  2MS3 A;  4V19 6;  2PMZ P;  1WCM L;  4YWL A;  5M3F L;  5MFP A;  2VL6 A;  2NYD A;  2QL0 A;  3PL5 A;  5FLM L;  2A6H D;  4A3L L;  2C6A A;  8RXN A;  1R0F A;  4POF A;  3GTP L;  4ZN1 B;  2PSM C;  2J9U B;  4AHW A;  4ZN3 B;  5C3E L;  1SMM A;  3LWR B;  3PZA A;  3S1N L;  2LCQ A;  1QYB A;  2NVY L;  3I4M L;  4AI2 A;  3KYY A;  4A93 L;  1LKO A;  3IU3 I;  3GTQ L;  5MFZ A;  6RXN A;  3P2A A;  2RDV A;  1PFW A;  3MSU A;  3S2D L;  3LWO B;  5C4X L;  5AN9 H;  3HAX C;  3S1M L;  2KN9 A;  3S1R L;  4UY8 1;  3S2H L;  3J7Y 1;  2WAQ P;  2V3B B;  1ODH A;  4AR3 A;  4X6A L;  1YK4 A;  1S2Z A;  4C3J L;  3LWP B;  4AI1 A;  2M4V A;  4XXB B;  4C3H L;  2KKD A;  3QQC E;  3GTG L;  5GAH c;  3H97 A;  1VCX A;  2E2J L;  2JA5 L;  1SFO L;  1CAA A;  4POG A;  4A3D L;  3KYU A;  1DX8 A;  2JI1 A;  1QCV A;  5IYC L;  3B0A B;  2ZIX A;  3K7A L;  3GTJ L;  1PFY A;  4BBS L;  4BXX L;  1TWA L;  1FHM A;  2EY4 E;  2CKC A;  2AYJ A;  3LWV B;  1Y1V L;  2K2D A;  4A3I L;  1R0G A;  2CKA A;  2O5J D;  4G6B A;  2HR5 A;  1VZH A;  1CAD A;  2V0F A;  7RXN A;  5M5X L;  4E6Y A;  1YV1 A;  1YUZ A;  5GAE c;  1BFY A;  5GAD c;  3HOU L;  5FJ8 L;  3RZ6 A;  1S30 A;  3LPE B;  2R93 L;  3NFP I;  4AI0 A;  5AI2 A;  3S17 L;  1NXG A;  3HJY B;  3PIP 1;  4A3C L;  2PPT A;  3WWN B;  3GTK L;  1B2J A;  4A3B L;  3HOV L;  4BY1 L;  5DM6 1;  3S14 L;  1IU6 A;  4XGH A;  4A3K L;  3H9B A;  3LNL A;  3MPS A;  5IYD L;  4AR5 A;  3FDJ A;  2NVQ L;  4U67 1;  5AI3 A;  4YWM A;  1TWC L;  4JAD A;  1BQ9 A;  3LWQ B;  4C2M 1;  2M4Y A;  1RYT A;  2H12 A;  2B5I D;  3QVD A;  3PIO 1;  4Y52 L;  1ZRP A;  4A3M L;  5K2M E;  1H7V A;  1T9O A;  1F4L A;  5MGN A;  5JVH 1;  3M4O L; 
#chains in the Genus database with same CATH homology
 1LKP A;  4AR4 A;  3KYV A;  2AYJ A;  4JAF A;  1YUX A;  1B71 A;  2K2D A;  2MS3 A;  4V19 6;  1VZI A;  1R0G A;  3SS2 A;  2CKA A;  2O5J D;  4GS7 D;  4G6B A;  4YWL A;  2HR5 A;  4AHX A;  1VZH A;  5MFP A;  1CAD A;  1RDG A;  2JI2 A;  2V0F A;  2VL6 A;  7RXN A;  2NYD A;  2PVE A;  2QL0 A;  5DM7 1;  2A6H D;  2PYA A;  2XJT A;  4E6Y A;  1YV1 A;  4WFN 1;  1YUZ A;  2C6A A;  5GAE c;  8RXN A;  1R0F A;  4POF A;  3A44 A;  1BE7 A;  2A6E D;  4ZN1 B;  3J7Z 1;  2PSM C;  2ERJ A;  2J9U B;  2V0E A;  3VPB E;  4AI3 A;  5RXN A;  1BFY A;  1SMU A;  4TVM A;  5GAD c;  4AHW A;  1LKM A;  2BE5 D;  3RZ6 A;  4ZN3 B;  1R0J A;  1RYQ A;  1S30 A;  1VZG A;  3KYW A;  5H1S c;  1NNQ A;  3LPE B;  1SMM A;  4LHL A;  5MF6 A;  3PKJ A;  1DVB A;  1RWD A;  2ERS A;  3PZA A;  5EIN C;  1RB9 A;  1R0I A;  2LCQ A;  1QYB A;  5GAG c;  3K35 A;  4K9F A;  3NFP I;  4AI2 A;  3RZT A;  2C6B A;  4AI0 A;  3KYY A;  5AI2 A;  1LKO A;  3IU3 I;  2JI3 A;  5MFZ A;  1E8J A;  6RXN A;  3P2A A;  4AR6 A;  2RDV A;  1NXG A;  3MSU A;  1IW7 D;  3PIP 1;  4AHY A;  2PPT A;  3WWN B;  2XJS A;  1B2J A;  2XJR A;  2L0Z A;  1LTL A;  1C09 A;  5AN9 H;  2A69 D;  2KN9 A;  4UY8 1;  4JAG A;  1B2O A;  2DSX A;  3J7Y 1;  2V3B B;  5DM6 1;  1ODH A;  5EIO C;  1R0H A;  4AR3 A;  2Z3Q B;  1IU6 A;  4XGH A;  3P8B A;  1YK4 A;  1S2Z A;  2Z3R B;  4JAE A;  4LHN A;  2M6O A;  4AI1 A;  1BQ8 A;  1YK5 A;  3LNL A;  2M4V A;  4AHZ A;  3MPS A;  4AR5 A;  1B13 A;  1SMW A;  2M6P A;  1RDV A;  4XXB B;  2KKD A;  3QQC E;  2XJV A;  4RXN A;  1JYB A;  5MLC 3;  2XJQ A;  4U67 1;  1NXE A;  5AI3 A;  2GMG A;  3ZG6 A;  4ME3 A;  4YWM A;  5GAH c;  1VCX A;  1IRN A;  4JAD A;  3PKI A;  1BQ9 A;  2A68 D;  1OWC A;  2XJP A;  1CAA A;  2M4Y A;  4POG A;  1RYT A;  1S24 A;  2H12 A;  1WJV A;  1QCV A;  2JI1 A;  3KYX A;  3KYU A;  1DX8 A;  2B5I D;  3QVD A;  3WWL A;  3PIO 1;  3B0A B;  1Z92 B;  2CR8 A;  2XJU A;  2ZIX A;  1ZRP A;  5JVG 1;  1T9P A;  5K2M E;  3PWF A;  1T9Q A;  1IU5 A;  1OWB A;  3RYG A;  4TPU A;  1FHH A;  5IY0 A;  4B8C D;  3B08 B;  1H7V A;  1IRO A;  2PVX A;  1FHM A;  1T9O A;  1BRF A;  5MGN A;  2CKC A;  5JVH 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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