1SU1A

Structural and biochemical characterization of yfce, a phosphoesterase from e. coli
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
184
structure length
184
Chain Sequence
MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Escherichia coli
molecule keywords Hypothetical protein yfcE
total genus 53
structure length 184
sequence length 184
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1su1A00
1SU1A 2Z06A 3C9FA 1IT6A 1OI8A 1AUIA 3IVEA 2YVTA 1KBPA 1QHWA 1S95A 4Q7FA 3GVEA 5F3WA 2QFPA 2NYMC 4H2FA 4IL1A 3IB8A 3EGHA 3RL4A 2GJUA 2XMOA 3KBPA 4M0VA 4MOYA 2WDFA 3DSDA 3H63A 4I5NC 4ORCA 4J6OA 4WWLA 3H68A 2IE4C 1XZWA 3ICFA 4KKZA 2BDXA 3P71C 3CK2A 2Z1AA 3LL8A 1W24A 3QFMA 4FBWA 1U32A 3QFNA 2KKNA 1S3NA 4MP0A 4FBQA 2A22A 3HVQA 4DSYA 3AV0A 4ZX2A 5JPEA 1T71A 3H60A 4FCXA 3C5WC 3H62B 1OIEA 4NZVA 4ZVZA 3RQZA 3H64A 1HO5A 3N5UA 2NYLC 4O24A 4ORAA 3H61A 1V73A 2JOGA 2ZBMA 3E7BA 1II7A 1S8EA 2HYPA 4UT3B 3T1IA 1M63A 3DW8C 2QJCA 2IAEC 4O4KA 3PSNA 3JYFA 4H2BA 3RL5A 3DSCA 3K7WC 3H69A 2AHDA 1G5BA 1S3MA 1XM7A 4JA9A 3THOB 1MF8A 5JJTA 2DFJA 5C1VA 4UWQA 4LU9A 1JK7A 4YKEA 1HPUA 1TCOA 2WDEA 1USHA 3H66A 3PSOA 3QFKA 1OIDA 1Z2WA 3QFOA 4H1SA 5EQVA 4XPNA 3E7AA 2USHA 3AUZA 4H2GA 1S70A 4JA7A 3ZU0A 3RL3A 3K7VC 4KBPA 3FGAC 3EGGA 4H1YP 5INBA 5HPEA 3IVDA 4H2IA 3QG5C 4V0WA 4O43A 1WAO1 2NPPC 3IB7A 1S3LA 4OR9A 2BCDA 1UTEA 2QFRA 1Z2XA 3THNA 3TGHA 4TUIA 4B2OA 4LTYA 4HD0A 2HYOA 1NNWA 2R17A 2WDCA 4IYPC 5JPFA 5IOHA 2Q8UA 5B8IA 1UF3A 2P6BA 3V4YA 2NXFA 3H67A 4UT2A 1T70A 2O8GA 4F0ZA 4DT2A 4MOVA 1WARA 4FBKA 4V0XA 2BQ8X 4DHLA 2Z72A 4UT3A 5J28A 3ZTVA 2CV9A 4O5GA 4ORBA 5DNYA 4G9JA 2O8AA 2HY1A 2IE3C 5GTUA 4I5LC 4V0VA 2WDDA 4LACC 1QFCA 4TUGA 1FJMA 1HP1A
chains in the Genus database with same CATH superfamily
1SU1A 3E0JA 2Z06A 3C9FA 1IT6A 1OI8A 1AUIA 3IVEA 2YVTA 1KBPA 1QHWA 1S95A 4Q7FA 3GVEA 5F3WA 2QFPA 2NYMC 2DXNA 4H2FA 4IL1A 3IB8A 3EGHA 3RL4A 2GJUA 2XMOA 3KBPA 4M0VA 4MOYA 2WDFA 3DSDA 3H63A 4I5NC 4ORCA 4J6OA 4WWLA 3H68A 2IE4C 1XZWA 3ICFA 4KKZA 2BDXA 3P71C 3CK2A 2Z1AA 3LL8A 1W24A 3QFMA 4FBWA 1U32A 3QFNA 2KKNA 1S3NA 4MP0A 4FBQA 2A22A 3HVQA 4DSYA 3AV0A 4ZX2A 5JPEA 1T71A 3H60A 4FCXA 3C5WC 3H62B 1OIEA 4NZVA 4ZVZA 3RQZA 3H64A 1HO5A 3N5UA 2NYLC 4O24A 4ORAA 3H61A 1V73A 2JOGA 2ZBMA 3E7BA 1II7A 1S8EA 2DXLA 2HYPA 4UT3B 3T1IA 1M63A 3FLOA 3DW8C 2QJCA 2IAEC 4O4KA 3PSNA 3JYFA 4H2BA 3RL5A 3DSCA 3K7WC 3H69A 2AHDA 1G5BA 1S3MA 1XM7A 4JA9A 3THOB 1MF8A 5JJTA 2DFJA 5C1VA 4UWQA 3D03A 4LU9A 1JK7A 4YKEA 1HPUA 1TCOA 2WDEA 1USHA 3H66A 3PSOA 3QFKA 1OIDA 1Z2WA 3QFOA 4H1SA 5EQVA 4XPNA 3E7AA 2USHA 3AUZA 4H2GA 1S70A 4JA7A 3ZU0A 3RL3A 2YEQA 3K7VC 4KBPA 3FGAC 3EGGA 4H1YP 5INBA 5HPEA 3IVDA 4H2IA 3QG5C 4V0WA 4O43A 1WAO1 2NPPC 3IB7A 1S3LA 4OR9A 2BCDA 1UTEA 2QFRA 1Z2XA 3THNA 3TGHA 4TUIA 4B2OA 4LTYA 4HD0A 2HYOA 1NNWA 2R17A 2WDCA 4IYPC 5JPFA 5IOHA 2Q8UA 5B8IA 1UF3A 2P6BA 3V4YA 2NXFA 3H67A 4UT2A 1T70A 2O8GA 4F0ZA 4DT2A 4MOVA 2ZO9B 1WARA 4FBKA 4V0XA 2BQ8X 4DHLA 2Z72A 4UT3A 5J28A 3ZTVA 2CV9A 4O5GA 4ORBA 5DNYA 4G9JA 2O8AA 2HY1A 2IE3C 5GTUA 4I5LC 4V0VA 2WDDA 2ZOAA 4LACC 1QFCA 4TUGA 1FJMA 1HP1A
chains in the Genus database with same CATH topology
1SU1A 3E0JA 2Z06A 3C9FA 1IT6A 1OI8A 1AUIA 3IVEA 2YVTA 1KBPA 1QHWA 1S95A 4Q7FA 3GVEA 5F3WA 2QFPA 2NYMC 2DXNA 4H2FA 4IL1A 3IB8A 3EGHA 3RL4A 2GJUA 2XMOA 3KBPA 4M0VA 4MOYA 2WDFA 3DSDA 3H63A 4I5NC 4ORCA 4J6OA 4WWLA 3H68A 2IE4C 1XZWA 3ICFA 4KKZA 2BDXA 3P71C 3CK2A 2Z1AA 3LL8A 1W24A 3QFMA 4FBWA 1U32A 3QFNA 2KKNA 1S3NA 4MP0A 4FBQA 2A22A 3HVQA 4DSYA 3AV0A 4ZX2A 5JPEA 1T71A 3H60A 4FCXA 3C5WC 3H62B 1OIEA 4NZVA 4ZVZA 3RQZA 3H64A 1HO5A 3N5UA 2NYLC 4O24A 4ORAA 3H61A 1V73A 2JOGA 2ZBMA 3E7BA 1II7A 1S8EA 2DXLA 2HYPA 4UT3B 3T1IA 1M63A 3FLOA 3DW8C 2QJCA 2IAEC 4O4KA 3PSNA 3JYFA 4H2BA 3RL5A 3DSCA 3K7WC 3H69A 2AHDA 1G5BA 1S3MA 1XM7A 4JA9A 3THOB 1MF8A 5JJTA 2DFJA 5C1VA 4UWQA 3D03A 4LU9A 1JK7A 4YKEA 1HPUA 1TCOA 2WDEA 1USHA 3H66A 3PSOA 3QFKA 1OIDA 1Z2WA 3QFOA 4H1SA 5EQVA 4XPNA 3E7AA 2USHA 3AUZA 4H2GA 1S70A 4JA7A 3ZU0A 3RL3A 2YEQA 3K7VC 4KBPA 3FGAC 3EGGA 4H1YP 5INBA 5HPEA 3IVDA 4H2IA 3QG5C 4V0WA 4O43A 1WAO1 2NPPC 3IB7A 1S3LA 4OR9A 2BCDA 1UTEA 2QFRA 1Z2XA 3THNA 3TGHA 4TUIA 4B2OA 4LTYA 4HD0A 2HYOA 1NNWA 2R17A 2WDCA 4IYPC 5JPFA 5IOHA 2Q8UA 5B8IA 1UF3A 2P6BA 3V4YA 2NXFA 3H67A 4UT2A 1T70A 2O8GA 4F0ZA 4DT2A 4MOVA 2ZO9B 1WARA 4FBKA 4V0XA 2BQ8X 4DHLA 2Z72A 4UT3A 5J28A 3ZTVA 2CV9A 4O5GA 4ORBA 5DNYA 4G9JA 2O8AA 2HY1A 2IE3C 5GTUA 4I5LC 4V0VA 2WDDA 2ZOAA 4LACC 1QFCA 4TUGA 1FJMA 1HP1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SU1 A;  2Z06 A;  3C9F A;  1IT6 A;  1OI8 A;  1AUI A;  3IVE A;  2YVT A;  1KBP A;  1QHW A;  1S95 A;  4Q7F A;  3GVE A;  5F3W A;  2QFP A;  2NYM C;  4H2F A;  4IL1 A;  3IB8 A;  3EGH A;  3RL4 A;  2GJU A;  2XMO A;  3KBP A;  4M0V A;  4MOY A;  2WDF A;  3DSD A;  3H63 A;  4I5N C;  4ORC A;  4J6O A;  4WWL A;  3H68 A;  2IE4 C;  1XZW A;  3ICF A;  4KKZ A;  2BDX A;  3P71 C;  3CK2 A;  2Z1A A;  3LL8 A;  1W24 A;  3QFM A;  4FBW A;  1U32 A;  3QFN A;  2KKN A;  1S3N A;  4MP0 A;  4FBQ A;  2A22 A;  3HVQ A;  4DSY A;  3AV0 A;  4ZX2 A;  5JPE A;  1T71 A;  3H60 A;  4FCX A;  3C5W C;  3H62 B;  1OIE A;  4NZV A;  4ZVZ A;  3RQZ A;  3H64 A;  1HO5 A;  3N5U A;  2NYL C;  4O24 A;  4ORA A;  3H61 A;  1V73 A;  2JOG A;  2ZBM A;  3E7B A;  1II7 A;  1S8E A;  2HYP A;  4UT3 B;  3T1I A;  1M63 A;  3DW8 C;  2QJC A;  2IAE C;  4O4K A;  3PSN A;  3JYF A;  4H2B A;  3RL5 A;  3DSC A;  3K7W C;  3H69 A;  2AHD A;  1G5B A;  1S3M A;  1XM7 A;  4JA9 A;  3THO B;  1MF8 A;  5JJT A;  2DFJ A;  5C1V A;  4UWQ A;  4LU9 A;  1JK7 A;  4YKE A;  1HPU A;  1TCO A;  2WDE A;  1USH A;  3H66 A;  3PSO A;  3QFK A;  1OID A;  1Z2W A;  3QFO A;  4H1S A;  5EQV A;  4XPN A;  3E7A A;  2USH A;  3AUZ A;  4H2G A;  1S70 A;  4JA7 A;  3ZU0 A;  3RL3 A;  3K7V C;  4KBP A;  3FGA C;  3EGG A;  4H1Y P;  5INB A;  5HPE A;  3IVD A;  4H2I A;  3QG5 C;  4V0W A;  4O43 A;  1WAO 1;  2NPP C;  3IB7 A;  1S3L A;  4OR9 A;  2BCD A;  1UTE A;  2QFR A;  1Z2X A;  3THN A;  3TGH A;  4TUI A;  4B2O A;  4LTY A;  4HD0 A;  2HYO A;  1NNW A;  2R17 A;  2WDC A;  4IYP C;  5JPF A;  5IOH A;  2Q8U A;  5B8I A;  1UF3 A;  2P6B A;  3V4Y A;  2NXF A;  3H67 A;  4UT2 A;  1T70 A;  2O8G A;  4F0Z A;  4DT2 A;  4MOV A;  1WAR A;  4FBK A;  4V0X A;  2BQ8 X;  4DHL A;  2Z72 A;  4UT3 A;  5J28 A;  3ZTV A;  2CV9 A;  4O5G A;  4ORB A;  5DNY A;  4G9J A;  2O8A A;  2HY1 A;  2IE3 C;  5GTU A;  4I5L C;  4V0V A;  2WDD A;  4LAC C;  1QFC A;  4TUG A;  1FJM A;  1HP1 A; 
#chains in the Genus database with same CATH topology
 1SU1 A;  3E0J A;  2Z06 A;  3C9F A;  1IT6 A;  1OI8 A;  1AUI A;  3IVE A;  2YVT A;  1KBP A;  1QHW A;  1S95 A;  4Q7F A;  3GVE A;  5F3W A;  2QFP A;  2NYM C;  2DXN A;  4H2F A;  4IL1 A;  3IB8 A;  3EGH A;  3RL4 A;  2GJU A;  2XMO A;  3KBP A;  4M0V A;  4MOY A;  2WDF A;  3DSD A;  3H63 A;  4I5N C;  4ORC A;  4J6O A;  4WWL A;  3H68 A;  2IE4 C;  1XZW A;  3ICF A;  4KKZ A;  2BDX A;  3P71 C;  3CK2 A;  2Z1A A;  3LL8 A;  1W24 A;  3QFM A;  4FBW A;  1U32 A;  3QFN A;  2KKN A;  1S3N A;  4MP0 A;  4FBQ A;  2A22 A;  3HVQ A;  4DSY A;  3AV0 A;  4ZX2 A;  5JPE A;  1T71 A;  3H60 A;  4FCX A;  3C5W C;  3H62 B;  1OIE A;  4NZV A;  4ZVZ A;  3RQZ A;  3H64 A;  1HO5 A;  3N5U A;  2NYL C;  4O24 A;  4ORA A;  3H61 A;  1V73 A;  2JOG A;  2ZBM A;  3E7B A;  1II7 A;  1S8E A;  2DXL A;  2HYP A;  4UT3 B;  3T1I A;  1M63 A;  3FLO A;  3DW8 C;  2QJC A;  2IAE C;  4O4K A;  3PSN A;  3JYF A;  4H2B A;  3RL5 A;  3DSC A;  3K7W C;  3H69 A;  2AHD A;  1G5B A;  1S3M A;  1XM7 A;  4JA9 A;  3THO B;  1MF8 A;  5JJT A;  2DFJ A;  5C1V A;  4UWQ A;  3D03 A;  4LU9 A;  1JK7 A;  4YKE A;  1HPU A;  1TCO A;  2WDE A;  1USH A;  3H66 A;  3PSO A;  3QFK A;  1OID A;  1Z2W A;  3QFO A;  4H1S A;  5EQV A;  4XPN A;  3E7A A;  2USH A;  3AUZ A;  4H2G A;  1S70 A;  4JA7 A;  3ZU0 A;  3RL3 A;  2YEQ A;  3K7V C;  4KBP A;  3FGA C;  3EGG A;  4H1Y P;  5INB A;  5HPE A;  3IVD A;  4H2I A;  3QG5 C;  4V0W A;  4O43 A;  1WAO 1;  2NPP C;  3IB7 A;  1S3L A;  4OR9 A;  2BCD A;  1UTE A;  2QFR A;  1Z2X A;  3THN A;  3TGH A;  4TUI A;  4B2O A;  4LTY A;  4HD0 A;  2HYO A;  1NNW A;  2R17 A;  2WDC A;  4IYP C;  5JPF A;  5IOH A;  2Q8U A;  5B8I A;  1UF3 A;  2P6B A;  3V4Y A;  2NXF A;  3H67 A;  4UT2 A;  1T70 A;  2O8G A;  4F0Z A;  4DT2 A;  4MOV A;  2ZO9 B;  1WAR A;  4FBK A;  4V0X A;  2BQ8 X;  4DHL A;  2Z72 A;  4UT3 A;  5J28 A;  3ZTV A;  2CV9 A;  4O5G A;  4ORB A;  5DNY A;  4G9J A;  2O8A A;  2HY1 A;  2IE3 C;  5GTU A;  4I5L C;  4V0V A;  2WDD A;  2ZOA A;  4LAC C;  1QFC A;  4TUG A;  1FJM A;  1HP1 A; 
#chains in the Genus database with same CATH homology
 1SU1 A;  3E0J A;  2Z06 A;  3C9F A;  1IT6 A;  1OI8 A;  1AUI A;  3IVE A;  2YVT A;  1KBP A;  1QHW A;  1S95 A;  4Q7F A;  3GVE A;  5F3W A;  2QFP A;  2NYM C;  2DXN A;  4H2F A;  4IL1 A;  3IB8 A;  3EGH A;  3RL4 A;  2GJU A;  2XMO A;  3KBP A;  4M0V A;  4MOY A;  2WDF A;  3DSD A;  3H63 A;  4I5N C;  4ORC A;  4J6O A;  4WWL A;  3H68 A;  2IE4 C;  1XZW A;  3ICF A;  4KKZ A;  2BDX A;  3P71 C;  3CK2 A;  2Z1A A;  3LL8 A;  1W24 A;  3QFM A;  4FBW A;  1U32 A;  3QFN A;  2KKN A;  1S3N A;  4MP0 A;  4FBQ A;  2A22 A;  3HVQ A;  4DSY A;  3AV0 A;  4ZX2 A;  5JPE A;  1T71 A;  3H60 A;  4FCX A;  3C5W C;  3H62 B;  1OIE A;  4NZV A;  4ZVZ A;  3RQZ A;  3H64 A;  1HO5 A;  3N5U A;  2NYL C;  4O24 A;  4ORA A;  3H61 A;  1V73 A;  2JOG A;  2ZBM A;  3E7B A;  1II7 A;  1S8E A;  2DXL A;  2HYP A;  4UT3 B;  3T1I A;  1M63 A;  3FLO A;  3DW8 C;  2QJC A;  2IAE C;  4O4K A;  3PSN A;  3JYF A;  4H2B A;  3RL5 A;  3DSC A;  3K7W C;  3H69 A;  2AHD A;  1G5B A;  1S3M A;  1XM7 A;  4JA9 A;  3THO B;  1MF8 A;  5JJT A;  2DFJ A;  5C1V A;  4UWQ A;  3D03 A;  4LU9 A;  1JK7 A;  4YKE A;  1HPU A;  1TCO A;  2WDE A;  1USH A;  3H66 A;  3PSO A;  3QFK A;  1OID A;  1Z2W A;  3QFO A;  4H1S A;  5EQV A;  4XPN A;  3E7A A;  2USH A;  3AUZ A;  4H2G A;  1S70 A;  4JA7 A;  3ZU0 A;  3RL3 A;  2YEQ A;  3K7V C;  4KBP A;  3FGA C;  3EGG A;  4H1Y P;  5INB A;  5HPE A;  3IVD A;  4H2I A;  3QG5 C;  4V0W A;  4O43 A;  1WAO 1;  2NPP C;  3IB7 A;  1S3L A;  4OR9 A;  2BCD A;  1UTE A;  2QFR A;  1Z2X A;  3THN A;  3TGH A;  4TUI A;  4B2O A;  4LTY A;  4HD0 A;  2HYO A;  1NNW A;  2R17 A;  2WDC A;  4IYP C;  5JPF A;  5IOH A;  2Q8U A;  5B8I A;  1UF3 A;  2P6B A;  3V4Y A;  2NXF A;  3H67 A;  4UT2 A;  1T70 A;  2O8G A;  4F0Z A;  4DT2 A;  4MOV A;  2ZO9 B;  1WAR A;  4FBK A;  4V0X A;  2BQ8 X;  4DHL A;  2Z72 A;  4UT3 A;  5J28 A;  3ZTV A;  2CV9 A;  4O5G A;  4ORB A;  5DNY A;  4G9J A;  2O8A A;  2HY1 A;  2IE3 C;  5GTU A;  4I5L C;  4V0V A;  2WDD A;  2ZOA A;  4LAC C;  1QFC A;  4TUG A;  1FJM A;  1HP1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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