1T9OA

Crystal structure of v44g cp rubredoxin
Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGGGKDQFEEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Electron transport
source organism Clostridium pasteurianum
publication title Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential.
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 9
structure length 53
sequence length 53
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1t9oA00
4YWLA 1LKMA 1RWDA 1S30A 1BFYA 2KN9A 2M4YA 1DVBA 1RDVA 5AI3A 2PVEA 1VCXA 1QYBA 1S2ZA 3RYGA 1B13A 4AR3A 2LCQA 4AR6A 2PYAA 6RXNA 2PVXA 3PZAA 1BQ9A 1T9QA 1LKPA 7RXNA 4AR4A 1FHMA 4YWMA 3RZTA 1IROA 2MS3A 3RZ6A 1S24A 1B2JA 3MPSA 1R0FA 1QCVA 1T9PA 3KYXA 3A44A 3KYWA 4RXNA 1YUXA 1YK5A 2RDVA 1IRNA 4K9FA 1R0JA 3PWFA 1CAAA 4POFA 5IY0A 2DSXA 5RXNA 8RXNA 1BQ8A 2K2DA 1T9OA 4ME3A 1RYTA 1SMWA 1DX8A 3KYVA 1R0IA 5AI2A 1CADA 1BE7A 3SS2A 1R0HA 1B2OA 1SMUA 2V3BB 2GMGA 1SMMA 2HR5A 1JYBA 1C09A 2VL6A 1IU5A 3QVDA 1RDGA 1R0GA 1E8JA 1B71A 4POGA 2KKDA 1LKOA 1YUZA 1NNQA 1YK4A 1RB9A 1FHHA 3KYUA 1YV1A 4AR5A 1H7VA 3KYYA 1LTLA 1BRFA 1IU6A 1ZRPA 4TPUA 2QL0A
chains in the Genus database with same CATH superfamily
1IW7D 4YWLA 3PKIA 4A3IL 5DM71 2KN9A 2PVEA 5IP9L 2HVYC 1QYBA 3RYGA 1B13A 2PPTA 3HOYL 2ZIXA 4A3JL 2M4VA 2JI1A 3JR7A 5MGNA 4X6AL 3I4NL 3H9CA 2E2HL 1TWHL 1VZGA 2JA7L 1OWCA 1T9QA 1I50L 3J7Z1 3PO3L 2M6OA 3QQCE 2MS3A 3VPBE 4AI3A 3MPSA 5IYCL 1T9PA 3M3YL 4RXNA 1YK5A 2RDVA 1IRNA 3MQKB 3HOXL 1F4LA 1PFWA 3S17L 1BQ8A 1T9OA 1DX8A 1PFVA 1TWGL 2ERJA 2WAQP 2A6ED 5EIOC 5IP7L 2WB1P 2A6HD 3LNLA 1JYBA 5EINC 3LWPB 1NNQA 2BE5D 2XJSA 1FHHA 3GTOL 3RZDL 4B8CD 3KYYA 4V196 4U671 4JADA 2E2IL 2R7ZL 4BBSL 4XXBB 1ZRPA 4TPUA 3HJYB 1LKMA 3S2DL 1PFYA 2B63L 3WWLA 4BY1L 2V0FA 3PO2L 2E2JL 3P8BA 4AI0A 4A3GL 4Y52L 2A69D 4AR6A 5FLML 6RXNA 2V0EA 4A3KL 3PKJA 1Y1WL 4A3FL 4BXXL 1NXEA 1LKPA 4C3HL 7RXNA 3S14L 3GTML 4YWMA 1SFOL 1PFUA 3RZ6A 3CQZL 1S24A 5DM61 4A3DL 3S16L 1QCVA 3KYXA 3A44A 3HOWL 4JAEA 1CAAA 2CR8A 1VZHA 3PIP1 5RXNA 1QQTA 3H0GL 2L0ZA 2A68D 4ME3A 2JA5L 1SMWA 3H97A 5MFZA 3S1NL 1R0IA 5C4JL 3WWNB 5M5XL 1CADA 2Z3QB 1BE7A 1R0HA 4BY7L 3HKZP 3GTQL 5K2ME 4G6BA 5MF6A 2V3BB 2APOB 3HAXC 1IU5A 5FJ8L 1NXGA 5M3ML 2C6AA 5C3EL 5M5WL 5M5YL 4A93L 4AHZA 4POGA 1YK4A 4A3BL 2CKCA 3GTLL 4AHYA 4JAFA 1H7VA 1LTLA 2XJTA 1WCML 1IU6A 2NVXL 4A3EL 1WJVA 4ZN3B 2PSMC 2NVQL 3M4OL 2CKAA 2M4YA 1DVBA 3GTPL 1RDVA 4JAGA 5AI3A 2NVYL 1VCXA 5H1Sc 2XJRA 4LHNA 2EY4E 1ODHA 1I3QL 5GADc 4AR3A 2XJPA 3S1QL 2PVXA 2AUSB 2AQCA 3PZAA 1FHMA 2R92L 3RZTA 1IROA 1K83L 5C4XL 5JVH1 5AN9H 1R0JA 3PWFA 4TVMA 5IY0A 2DSXA 2K2DA 3IU3I 3KYVA 4AYBP 3I4ML 1TWAL 5AI2A 3SS2A 2JA6L 1B2OA 4AHWA 4A3CL 2GMGA 1SMMA 3RZOL 3GTKL 4A3ML 3QVDA 1R0GA 4AI2A 2M6PA 1B71A 3HJWB 4C3IL 5IYDL 1I6HL 3K35A 1PZXA 3FKIL 1YUZA 3LWVB 1RB9A 3HOVL 3KYUA 3LPEB 4ZN1B 2RFKB 1YV1A 4AR5A 4Y7NL 2VUML 3HOZL 3S15L 2AYJA 2QL0A 5GAEc 1RWDA 1VZIA 5M3FL 3P2AA 2XJVA 3NFPI 1S30A 1BFYA 4XGHA 5MFPA 2PMZP 1S2ZA 3LWQB 4AHXA 2LCQA 2PYAA 1TWFL 3H9BA 2B5ID 4C3JL 2Z3RB 5GAGc 1BQ9A 3S1ML 4AR4A 3PIO1 3PL5A 5C44L 1Y1VL 3S2HL 2Y0SP 2XJUA 3ZG6A 4LHLA 4QIWP 3K7AL 1B2JA 4AI1A 3GTJL 1R0FA 1OWBA 3KYWA 4BBRL 1YUXA 3B08B 4E6YA 2J9UB 3FDJA 4K9FA 3S1RL 3HOUL 5MLC3 3H99A 1RYQA 1TWCL 4POFA 3H3VM 2R93L 8RXNA 2NYDA 1RYTA 5JVG1 4WFN1 4GS7D 2H12A 3LWRB 1SMUA 2JI2A 4C2M1 1R9TL 2JA8L 3B0AB 4UY81 2HR5A 3GTGL 3J7Y1 5GAHc 4A3LL 1C09A 2VL6A 1Z92B 1RDGA 1E8JA 2O5JD 2NVTL 2ERSA 2KKDA 1P7PA 1LKOA 2XJQA 5IYBL 2JI3A 2C6BA 1BRFA 2YU9L 3LWOB 3MSUA
chains in the Genus database with same CATH topology
1IW7D 4YWLA 1LKMA 1RWDA 1VZIA 3PKIA 3P2AA 2XJVA 3NFPI 5DM71 2CKAA 1S30A 1BFYA 2KN9A 2M4YA 1DVBA 3WWLA 1RDVA 4XGHA 4JAGA 2V0FA 5AI3A 5MFPA 3P8BA 1VCXA 5H1Sc 1QYBA 2XJRA 4AI0A 1S2ZA 4LHNA 3RYGA 1ODHA 1B13A 2PPTA 4AHXA 5GADc 2A69D 4AR3A 2XJPA 2ZIXA 2PYAA 2M4VA 2JI1A 2LCQA 4AR6A 6RXNA 2V0EA 5MGNA 2B5ID 3PKJA 2PVXA 1VZGA 2Z3RB 5GAGc 1NXEA 3PZAA 1OWCA 1BQ9A 1T9QA 1LKPA 7RXNA 4AR4A 3PIO1 3J7Z1 1FHMA 4YWMA 2M6OA 3RZTA 3QQCE 2XJUA 1IROA 3ZG6A 2MS3A 4LHLA 3RZ6A 3VPBE 4AI3A 1S24A 5DM61 1B2JA 4AI1A 3MPSA 1R0FA 1OWBA 1QCVA 1T9PA 3KYXA 3A44A 3KYWA 4RXNA 1YUXA 5JVH1 1YK5A 3B08B 2RDVA 1IRNA 4JAEA 4E6YA 2J9UB 4K9FA 5AN9H 1R0JA 3PWFA 5MLC3 3MSUA 4TVMA 1CAAA 2CR8A 1VZHA 3PIP1 1RYQA 4POFA 2DSXA 5IY0A 5RXNA 8RXNA 1BQ8A 2NYDA 2L0ZA 2K2DA 2A68D 1T9OA 4ME3A 1RYTA 1SMWA 3IU3I 1DX8A 3KYVA 5MFZA 1R0IA 5JVG1 4WFN1 5AI2A 2ERJA 4GS7D 3WWNB 1CADA 2H12A 2Z3QB 2A6ED 5EIOC 1BE7A 3SS2A 1R0HA 1B2OA 4AHWA 1SMUA 2JI2A 5K2ME 4G6BA 5MF6A 2A6HD 2V3BB 3B0AB 2GMGA 3LNLA 1SMMA 2HR5A 1JYBA 4UY81 3J7Y1 5GAHc 1C09A 2VL6A 1IU5A 1Z92B 5EINC 3QVDA 1RDGA 1NXGA 1R0GA 4AI2A 2C6AA 1E8JA 2M6PA 2O5JD 1B71A 2QL0A 2ERSA 4AHZA 4POGA 2KKDA 3K35A 1LKOA 1YUZA 1NNQA 2BE5D 1YK4A 1RB9A 1FHHA 2XJSA 3KYUA 3LPEB 2CKCA 4ZN1B 2XJQA 4AHYA 1YV1A 4JAFA 4AR5A 1H7VA 4B8CD 2JI3A 3KYYA 4V196 1LTLA 2XJTA 4U671 2C6BA 5GAEc 4JADA 1BRFA 1IU6A 2AYJA 1WJVA 4ZN3B 4XXBB 1ZRPA 4TPUA 2PVEA 2PSMC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YWL A;  1LKM A;  1RWD A;  1S30 A;  1BFY A;  2KN9 A;  2M4Y A;  1DVB A;  1RDV A;  5AI3 A;  2PVE A;  1VCX A;  1QYB A;  1S2Z A;  3RYG A;  1B13 A;  4AR3 A;  2LCQ A;  4AR6 A;  2PYA A;  6RXN A;  2PVX A;  3PZA A;  1BQ9 A;  1T9Q A;  1LKP A;  7RXN A;  4AR4 A;  1FHM A;  4YWM A;  3RZT A;  1IRO A;  2MS3 A;  3RZ6 A;  1S24 A;  1B2J A;  3MPS A;  1R0F A;  1QCV A;  1T9P A;  3KYX A;  3A44 A;  3KYW A;  4RXN A;  1YUX A;  1YK5 A;  2RDV A;  1IRN A;  4K9F A;  1R0J A;  3PWF A;  1CAA A;  4POF A;  5IY0 A;  2DSX A;  5RXN A;  8RXN A;  1BQ8 A;  2K2D A;  1T9O A;  4ME3 A;  1RYT A;  1SMW A;  1DX8 A;  3KYV A;  1R0I A;  5AI2 A;  1CAD A;  1BE7 A;  3SS2 A;  1R0H A;  1B2O A;  1SMU A;  2V3B B;  2GMG A;  1SMM A;  2HR5 A;  1JYB A;  1C09 A;  2VL6 A;  1IU5 A;  3QVD A;  1RDG A;  1R0G A;  1E8J A;  1B71 A;  4POG A;  2KKD A;  1LKO A;  1YUZ A;  1NNQ A;  1YK4 A;  1RB9 A;  1FHH A;  3KYU A;  1YV1 A;  4AR5 A;  1H7V A;  3KYY A;  1LTL A;  1BRF A;  1IU6 A;  1ZRP A;  4TPU A;  2QL0 A; 
#chains in the Genus database with same CATH topology
 1IW7 D;  4YWL A;  3PKI A;  4A3I L;  5DM7 1;  2KN9 A;  2PVE A;  5IP9 L;  2HVY C;  1QYB A;  3RYG A;  1B13 A;  2PPT A;  3HOY L;  2ZIX A;  4A3J L;  2M4V A;  2JI1 A;  3JR7 A;  5MGN A;  4X6A L;  3I4N L;  3H9C A;  2E2H L;  1TWH L;  1VZG A;  2JA7 L;  1OWC A;  1T9Q A;  1I50 L;  3J7Z 1;  3PO3 L;  2M6O A;  3QQC E;  2MS3 A;  3VPB E;  4AI3 A;  3MPS A;  5IYC L;  1T9P A;  3M3Y L;  4RXN A;  1YK5 A;  2RDV A;  1IRN A;  3MQK B;  3HOX L;  1F4L A;  1PFW A;  3S17 L;  1BQ8 A;  1T9O A;  1DX8 A;  1PFV A;  1TWG L;  2ERJ A;  2WAQ P;  2A6E D;  5EIO C;  5IP7 L;  2WB1 P;  2A6H D;  3LNL A;  1JYB A;  5EIN C;  3LWP B;  1NNQ A;  2BE5 D;  2XJS A;  1FHH A;  3GTO L;  3RZD L;  4B8C D;  3KYY A;  4V19 6;  4U67 1;  4JAD A;  2E2I L;  2R7Z L;  4BBS L;  4XXB B;  1ZRP A;  4TPU A;  3HJY B;  1LKM A;  3S2D L;  1PFY A;  2B63 L;  3WWL A;  4BY1 L;  2V0F A;  3PO2 L;  2E2J L;  3P8B A;  4AI0 A;  4A3G L;  4Y52 L;  2A69 D;  4AR6 A;  5FLM L;  6RXN A;  2V0E A;  4A3K L;  3PKJ A;  1Y1W L;  4A3F L;  4BXX L;  1NXE A;  1LKP A;  4C3H L;  7RXN A;  3S14 L;  3GTM L;  4YWM A;  1SFO L;  1PFU A;  3RZ6 A;  3CQZ L;  1S24 A;  5DM6 1;  4A3D L;  3S16 L;  1QCV A;  3KYX A;  3A44 A;  3HOW L;  4JAE A;  1CAA A;  2CR8 A;  1VZH A;  3PIP 1;  5RXN A;  1QQT A;  3H0G L;  2L0Z A;  2A68 D;  4ME3 A;  2JA5 L;  1SMW A;  3H97 A;  5MFZ A;  3S1N L;  1R0I A;  5C4J L;  3WWN B;  5M5X L;  1CAD A;  2Z3Q B;  1BE7 A;  1R0H A;  4BY7 L;  3HKZ P;  3GTQ L;  5K2M E;  4G6B A;  5MF6 A;  2V3B B;  2APO B;  3HAX C;  1IU5 A;  5FJ8 L;  1NXG A;  5M3M L;  2C6A A;  5C3E L;  5M5W L;  5M5Y L;  4A93 L;  4AHZ A;  4POG A;  1YK4 A;  4A3B L;  2CKC A;  3GTL L;  4AHY A;  4JAF A;  1H7V A;  1LTL A;  2XJT A;  1WCM L;  1IU6 A;  2NVX L;  4A3E L;  1WJV A;  4ZN3 B;  2PSM C;  2NVQ L;  3M4O L;  2CKA A;  2M4Y A;  1DVB A;  3GTP L;  1RDV A;  4JAG A;  5AI3 A;  2NVY L;  1VCX A;  5H1S c;  2XJR A;  4LHN A;  2EY4 E;  1ODH A;  1I3Q L;  5GAD c;  4AR3 A;  2XJP A;  3S1Q L;  2PVX A;  2AUS B;  2AQC A;  3PZA A;  1FHM A;  2R92 L;  3RZT A;  1IRO A;  1K83 L;  5C4X L;  5JVH 1;  5AN9 H;  1R0J A;  3PWF A;  4TVM A;  5IY0 A;  2DSX A;  2K2D A;  3IU3 I;  3KYV A;  4AYB P;  3I4M L;  1TWA L;  5AI2 A;  3SS2 A;  2JA6 L;  1B2O A;  4AHW A;  4A3C L;  2GMG A;  1SMM A;  3RZO L;  3GTK L;  4A3M L;  3QVD A;  1R0G A;  4AI2 A;  2M6P A;  1B71 A;  3HJW B;  4C3I L;  5IYD L;  1I6H L;  3K35 A;  1PZX A;  3FKI L;  1YUZ A;  3LWV B;  1RB9 A;  3HOV L;  3KYU A;  3LPE B;  4ZN1 B;  2RFK B;  1YV1 A;  4AR5 A;  4Y7N L;  2VUM L;  3HOZ L;  3S15 L;  2AYJ A;  2QL0 A;  5GAE c;  1RWD A;  1VZI A;  5M3F L;  3P2A A;  2XJV A;  3NFP I;  1S30 A;  1BFY A;  4XGH A;  5MFP A;  2PMZ P;  1S2Z A;  3LWQ B;  4AHX A;  2LCQ A;  2PYA A;  1TWF L;  3H9B A;  2B5I D;  4C3J L;  2Z3R B;  5GAG c;  1BQ9 A;  3S1M L;  4AR4 A;  3PIO 1;  3PL5 A;  5C44 L;  1Y1V L;  3S2H L;  2Y0S P;  2XJU A;  3ZG6 A;  4LHL A;  4QIW P;  3K7A L;  1B2J A;  4AI1 A;  3GTJ L;  1R0F A;  1OWB A;  3KYW A;  4BBR L;  1YUX A;  3B08 B;  4E6Y A;  2J9U B;  3FDJ A;  4K9F A;  3S1R L;  3HOU L;  5MLC 3;  3H99 A;  1RYQ A;  1TWC L;  4POF A;  3H3V M;  2R93 L;  8RXN A;  2NYD A;  1RYT A;  5JVG 1;  4WFN 1;  4GS7 D;  2H12 A;  3LWR B;  1SMU A;  2JI2 A;  4C2M 1;  1R9T L;  2JA8 L;  3B0A B;  4UY8 1;  2HR5 A;  3GTG L;  3J7Y 1;  5GAH c;  4A3L L;  1C09 A;  2VL6 A;  1Z92 B;  1RDG A;  1E8J A;  2O5J D;  2NVT L;  2ERS A;  2KKD A;  1P7P A;  1LKO A;  2XJQ A;  5IYB L;  2JI3 A;  2C6B A;  1BRF A;  2YU9 L;  3LWO B;  3MSU A; 
#chains in the Genus database with same CATH homology
 1IW7 D;  4YWL A;  1LKM A;  1RWD A;  1VZI A;  3PKI A;  3P2A A;  2XJV A;  3NFP I;  5DM7 1;  2CKA A;  1S30 A;  1BFY A;  2KN9 A;  2M4Y A;  1DVB A;  3WWL A;  1RDV A;  4XGH A;  4JAG A;  2V0F A;  5AI3 A;  5MFP A;  3P8B A;  1VCX A;  5H1S c;  1QYB A;  2XJR A;  4AI0 A;  1S2Z A;  4LHN A;  3RYG A;  1ODH A;  1B13 A;  2PPT A;  4AHX A;  5GAD c;  2A69 D;  4AR3 A;  2XJP A;  2ZIX A;  2PYA A;  2M4V A;  2JI1 A;  2LCQ A;  4AR6 A;  6RXN A;  2V0E A;  5MGN A;  2B5I D;  3PKJ A;  2PVX A;  1VZG A;  2Z3R B;  5GAG c;  1NXE A;  3PZA A;  1OWC A;  1BQ9 A;  1T9Q A;  1LKP A;  7RXN A;  4AR4 A;  3PIO 1;  3J7Z 1;  1FHM A;  4YWM A;  2M6O A;  3RZT A;  3QQC E;  2XJU A;  1IRO A;  3ZG6 A;  2MS3 A;  4LHL A;  3RZ6 A;  3VPB E;  4AI3 A;  1S24 A;  5DM6 1;  1B2J A;  4AI1 A;  3MPS A;  1R0F A;  1OWB A;  1QCV A;  1T9P A;  3KYX A;  3A44 A;  3KYW A;  4RXN A;  1YUX A;  5JVH 1;  1YK5 A;  3B08 B;  2RDV A;  1IRN A;  4JAE A;  4E6Y A;  2J9U B;  4K9F A;  5AN9 H;  1R0J A;  3PWF A;  5MLC 3;  3MSU A;  4TVM A;  1CAA A;  2CR8 A;  1VZH A;  3PIP 1;  1RYQ A;  4POF A;  2DSX A;  5IY0 A;  5RXN A;  8RXN A;  1BQ8 A;  2NYD A;  2L0Z A;  2K2D A;  2A68 D;  1T9O A;  4ME3 A;  1RYT A;  1SMW A;  3IU3 I;  1DX8 A;  3KYV A;  5MFZ A;  1R0I A;  5JVG 1;  4WFN 1;  5AI2 A;  2ERJ A;  4GS7 D;  3WWN B;  1CAD A;  2H12 A;  2Z3Q B;  2A6E D;  5EIO C;  1BE7 A;  3SS2 A;  1R0H A;  1B2O A;  4AHW A;  1SMU A;  2JI2 A;  5K2M E;  4G6B A;  5MF6 A;  2A6H D;  2V3B B;  3B0A B;  2GMG A;  3LNL A;  1SMM A;  2HR5 A;  1JYB A;  4UY8 1;  3J7Y 1;  5GAH c;  1C09 A;  2VL6 A;  1IU5 A;  1Z92 B;  5EIN C;  3QVD A;  1RDG A;  1NXG A;  1R0G A;  4AI2 A;  2C6A A;  1E8J A;  2M6P A;  2O5J D;  1B71 A;  2QL0 A;  2ERS A;  4AHZ A;  4POG A;  2KKD A;  3K35 A;  1LKO A;  1YUZ A;  1NNQ A;  2BE5 D;  1YK4 A;  1RB9 A;  1FHH A;  2XJS A;  3KYU A;  3LPE B;  2CKC A;  4ZN1 B;  2XJQ A;  4AHY A;  1YV1 A;  4JAF A;  4AR5 A;  1H7V A;  4B8C D;  2JI3 A;  3KYY A;  4V19 6;  1LTL A;  2XJT A;  4U67 1;  2C6B A;  5GAE c;  4JAD A;  1BRF A;  1IU6 A;  2AYJ A;  1WJV A;  4ZN3 B;  4XXB B;  1ZRP A;  4TPU A;  2PVE A;  2PSM C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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