1T9OA

Crystal structure of v44g cp rubredoxin
Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGGGKDQFEEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Electron transport
source organism Clostridium pasteurianum
publication title Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential.
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 9
structure length 53
sequence length 53
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1t9oA00
1LKOA 1T9QA 3MPSA 1B13A 1S2ZA 1R0IA 1YUZA 4AR4A 3KYXA 1FHMA 1YV1A 1R0FA 1RDGA 1DX8A 3PWFA 1CAAA 1B2OA 4YWLA 4RXNA 4POFA 1FHHA 1YK4A 1RB9A 1IU6A 3RYGA 1SMMA 1NNQA 2HR5A 1IU5A 3RZTA 4AR3A 2M4YA 1JYBA 1IRNA 1SMWA 5AI2A 8RXNA 1DVBA 3KYUA 4AR6A 3QVDA 2RDVA 3KYWA 4POGA 3A44A 1BRFA 1BQ8A 1E8JA 1C09A 5AI3A 1QCVA 1B2JA 1BQ9A 3PZAA 1S24A 1ZRPA 1T9OA 1SMUA 6RXNA 1IROA 2PVEA 2QL0A 1B71A 1LKMA 4K9FA 1R0JA 5IY0A 2DSXA 2KKDA 1LTLA 2K2DA 2V3BB 1BE7A 2PVXA 3SS2A 4ME3A 1YK5A 2PYAA 1RWDA 4AR5A 2MS3A 1S30A 2GMGA 2LCQA 1CADA 5RXNA 1VCXA 3KYVA 3RZ6A 1YUXA 1QYBA 7RXNA 1T9PA 4TPUA 2KN9A 1R0GA 2VL6A 1RYTA 1LKPA 4YWMA 3KYYA 1R0HA 1RDVA 1H7VA 1BFYA
chains in the Genus database with same CATH superfamily
1LKOA 1T9QA 3MPSA 1VZIA 4ZN1B 2A6ED 1R0IA 1OWBA 3GTQL 3HJYB 1YV1A 1R0FA 3PWFA 2CKAA 2L0ZA 4E6YA 4RXNA 3HJWB 1NXGA 3S14L 5AI2A 4A3FL 4C2M1 5GAEc 3S1NL 1OWCA 4POGA 1P7PA 3HKZP 1ODHA 2JI2A 4UY81 2JA8L 1BQ8A 1E8JA 2YU9L 3GTPL 1PZXA 1I6HL 2XJUA 1BQ9A 1S24A 1ZRPA 2NYDA 2APOB 1SMUA 3HOYL 2QL0A 1B71A 4AI1A 2A6HD 2DSXA 4A3CL 1PFVA 3H99A 1TWAL 3MQKB 4XXBB 1BE7A 2PVXA 3FKIL 4XGHA 1RYQA 1YK5A 3LWVB 1RWDA 4AI3A 4A3JL 2NVQL 2BE5D 2NVYL 2LCQA 5K2ME 1TWHL 3H97A 3GTML 1VCXA 4A3EL 3KYVA 1QYBA 3H9CA 5IYBL 3LWOB 2XJPA 2JI1A 4TVMA 4YWMA 3J7Y1 2JA5L 3HOZL 1S2ZA 4JAGA 2R93L 1YUZA 3S17L 2PSMC 4AHWA 2EY4E 1RDGA 1NXEA 1B2OA 2C6BA 1TWGL 2B63L 2Y0SP 5FJ8L 2M6PA 4YWLA 2B5ID 3PIP1 4GS7D 1RB9A 1SMMA 1Z92B 1I50L 5MFZA 2R7ZL 4AI0A 5MGNA 1IRNA 8RXNA 1DVBA 3PKIA 3KYWA 2JA7L 5IYDL 2AYJA 3I4NL 1BRFA 3HOUL 2XJQA 4AHYA 5EINC 1C09A 3B0AB 2XJTA 5AI3A 1QCVA 3GTKL 4X6AL 3S15L 5MLC3 3GTGL 5H1Sc 4JAEA 6RXNA 4C3IL 1LKMA 3P8BA 5GADc 4C3JL 1LTLA 4G6BA 3ZG6A 5AN9H 2Z3QB 2PYAA 4A3IL 4AR5A 2Z3RB 1IW7D 5M3FL 2AUSB 2E2IL 5RXNA 3K35A 3IU3I 3RZ6A 3MSUA 5FLML 3PO2L 7RXNA 1T9PA 2VL6A 5EIOC 5M5WL 3S2HL 1RYTA 1LKPA 3KYYA 4AHXA 1RDVA 3I4ML 1H7VA 5DM61 1VZHA 5DM71 3S1QL 5GAGc 2NVTL 1B13A 3PL5A 3VPBE 4B8CD 4AR4A 3KYXA 2ERJA 1SFOL 2M4VA 4A3LL 4JAFA 4POFA 4V196 1FHHA 1IU6A 2WB1P 1NNQA 2HR5A 3LWRB 1IU5A 2RFKB 3RZTA 2M4YA 4A93L 3LWQB 1SMWA 4BBRL 3KYUA 2HVYC 3PIO1 1VZGA 3P2AA 2XJVA 5M3ML 1F4LA 2A68D 3PZAA 2CKCA 3WWNB 2XJSA 1T9OA 2VUML 1IROA 2CR8A 2PVEA 4A3DL 3J7Z1 1QQTA 5C4JL 4K9FA 3M3YL 4AI2A 4BXXL 2JA6L 3WWLA 5JVG1 5IY0A 2E2JL 3NFPI 5C44L 2M6OA 1R9TL 2V3BB 4U671 2O5JD 2MS3A 1PFUA 2WAQP 4BY1L 4AHZA 2C6AA 3S1ML 1CADA 4A3GL 5C3EL 4ZN3B 1YUXA 3FDJA 1TWCL 4TPUA 2PMZP 4LHLA 3QQCE 1WJVA 3S2DL 3S1RL 3RZDL 5MF6A 3H0GL 1FHMA 4QIWP 1TWFL 5IP7L 5IP9L 1DX8A 3PKJA 1CAAA 5GAHc 3H9BA 2NVXL 2AQCA 3GTLL 1YK4A 3RYGA 4A3KL 3HOWL 2J9UB 4C3HL 3HAXC 3JR7A 4BBSL 4AR3A 1JYBA 5IYCL 3H3VM 4AR6A 3QVDA 2RDVA 5M5XL 3A44A 3PO3L 1PFYA 3S16L 2V0FA 3GTOL 1B2JA 3RZOL 2H12A 2E2HL 1Y1VL 3HOVL 4BY7L 3HOXL 4WFN1 2A69D 4AYBP 1R0JA 2V0EA 3LPEB 2PPTA 2KKDA 3B08B 2K2DA 3GTJL 2ERSA 1WCML 4A3ML 3SS2A 3LNLA 4Y7NL 4ME3A 5JVH1 3K7AL 2R92L 4JADA 4Y52L 3M4OL 5M5YL 1PFWA 1S30A 2GMGA 1Y1WL 1I3QL 4LHNA 2ZIXA 3CQZL 2KN9A 5MFPA 1R0GA 3LWPB 1R0HA 1K83L 4A3BL 2XJRA 5C4XL 1BFYA 2JI3A
chains in the Genus database with same CATH topology
5DM71 1LKOA 5GAGc 1T9QA 3MPSA 1VZIA 4ZN1B 1B13A 1S2ZA 4JAGA 2A6ED 1R0IA 5MF6A 1OWBA 3VPBE 1YUZA 4B8CD 4AR4A 3KYXA 1FHMA 1YV1A 2ERJA 2PSMC 4AHWA 1R0FA 1RDGA 1DX8A 1NXEA 3PKJA 3PWFA 1CAAA 2CKAA 1B2OA 2L0ZA 5GAHc 2C6BA 2M4VA 4E6YA 2M6PA 4YWLA 4JAFA 4RXNA 2B5ID 4POFA 3PIP1 4V196 1FHHA 4GS7D 1YK4A 1RB9A 1IU6A 3RYGA 1SMMA 1NXGA 1Z92B 2J9UB 1NNQA 5MFZA 2HR5A 1IU5A 3RZTA 4AR3A 2M4YA 4AI0A 1JYBA 5MGNA 1IRNA 1SMWA 5AI2A 8RXNA 1DVBA 3PKIA 3KYUA 4AR6A 3QVDA 5GAEc 2RDVA 3KYWA 3PIO1 1OWCA 4POGA 3A44A 1VZGA 1ODHA 2AYJA 1BRFA 2JI2A 4UY81 2XJQA 3P2AA 4AHYA 1BQ8A 5EINC 2V0FA 2XJVA 1E8JA 1C09A 3B0AB 1BFYA 2XJTA 5AI3A 1QCVA 1B2JA 2A68D 1BQ9A 2XJUA 3PZAA 1S24A 1ZRPA 2H12A 5MLC3 2NYDA 5H1Sc 2CKCA 3WWNB 2XJSA 1T9OA 1SMUA 4JAEA 6RXNA 1IROA 2CR8A 2PVEA 2QL0A 3J7Z1 1B71A 1LKMA 4K9FA 4AI1A 4WFN1 2A69D 1R0JA 4AI2A 2V0EA 3P8BA 3WWLA 5JVG1 3LPEB 5IY0A 2PPTA 2A6HD 2DSXA 2KKDA 5GADc 3B08B 3NFPI 1LTLA 4G6BA 3ZG6A 2K2DA 2ERSA 2M6OA 2V3BB 4XXBB 1BE7A 2PVXA 3SS2A 3LNLA 4ME3A 4XGHA 5JVH1 5AN9H 1RYQA 2Z3QB 4U671 1YK5A 2PYAA 2O5JD 1RWDA 4JADA 4AR5A 4AI3A 2MS3A 2Z3RB 2BE5D 1IW7D 1S30A 2GMGA 2LCQA 4AHZA 2C6AA 5K2ME 1CADA 4LHNA 5RXNA 3K35A 1VCXA 3IU3I 3KYVA 3RZ6A 4ZN3B 1YUXA 2ZIXA 3MSUA 1QYBA 7RXNA 1T9PA 4TPUA 2KN9A 5MFPA 1R0GA 2VL6A 5EIOC 2XJPA 1RYTA 1LKPA 2JI1A 4LHLA 3KYYA 4TVMA 4YWMA 1R0HA 4AHXA 3QQCE 1RDVA 1WJVA 1H7VA 2XJRA 3J7Y1 5DM61 1VZHA 2JI3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LKO A;  1T9Q A;  3MPS A;  1B13 A;  1S2Z A;  1R0I A;  1YUZ A;  4AR4 A;  3KYX A;  1FHM A;  1YV1 A;  1R0F A;  1RDG A;  1DX8 A;  3PWF A;  1CAA A;  1B2O A;  4YWL A;  4RXN A;  4POF A;  1FHH A;  1YK4 A;  1RB9 A;  1IU6 A;  3RYG A;  1SMM A;  1NNQ A;  2HR5 A;  1IU5 A;  3RZT A;  4AR3 A;  2M4Y A;  1JYB A;  1IRN A;  1SMW A;  5AI2 A;  8RXN A;  1DVB A;  3KYU A;  4AR6 A;  3QVD A;  2RDV A;  3KYW A;  4POG A;  3A44 A;  1BRF A;  1BQ8 A;  1E8J A;  1C09 A;  5AI3 A;  1QCV A;  1B2J A;  1BQ9 A;  3PZA A;  1S24 A;  1ZRP A;  1T9O A;  1SMU A;  6RXN A;  1IRO A;  2PVE A;  2QL0 A;  1B71 A;  1LKM A;  4K9F A;  1R0J A;  5IY0 A;  2DSX A;  2KKD A;  1LTL A;  2K2D A;  2V3B B;  1BE7 A;  2PVX A;  3SS2 A;  4ME3 A;  1YK5 A;  2PYA A;  1RWD A;  4AR5 A;  2MS3 A;  1S30 A;  2GMG A;  2LCQ A;  1CAD A;  5RXN A;  1VCX A;  3KYV A;  3RZ6 A;  1YUX A;  1QYB A;  7RXN A;  1T9P A;  4TPU A;  2KN9 A;  1R0G A;  2VL6 A;  1RYT A;  1LKP A;  4YWM A;  3KYY A;  1R0H A;  1RDV A;  1H7V A;  1BFY A; 
#chains in the Genus database with same CATH topology
 1LKO A;  1T9Q A;  3MPS A;  1VZI A;  4ZN1 B;  2A6E D;  1R0I A;  1OWB A;  3GTQ L;  3HJY B;  1YV1 A;  1R0F A;  3PWF A;  2CKA A;  2L0Z A;  4E6Y A;  4RXN A;  3HJW B;  1NXG A;  3S14 L;  5AI2 A;  4A3F L;  4C2M 1;  5GAE c;  3S1N L;  1OWC A;  4POG A;  1P7P A;  3HKZ P;  1ODH A;  2JI2 A;  4UY8 1;  2JA8 L;  1BQ8 A;  1E8J A;  2YU9 L;  3GTP L;  1PZX A;  1I6H L;  2XJU A;  1BQ9 A;  1S24 A;  1ZRP A;  2NYD A;  2APO B;  1SMU A;  3HOY L;  2QL0 A;  1B71 A;  4AI1 A;  2A6H D;  2DSX A;  4A3C L;  1PFV A;  3H99 A;  1TWA L;  3MQK B;  4XXB B;  1BE7 A;  2PVX A;  3FKI L;  4XGH A;  1RYQ A;  1YK5 A;  3LWV B;  1RWD A;  4AI3 A;  4A3J L;  2NVQ L;  2BE5 D;  2NVY L;  2LCQ A;  5K2M E;  1TWH L;  3H97 A;  3GTM L;  1VCX A;  4A3E L;  3KYV A;  1QYB A;  3H9C A;  5IYB L;  3LWO B;  2XJP A;  2JI1 A;  4TVM A;  4YWM A;  3J7Y 1;  2JA5 L;  3HOZ L;  1S2Z A;  4JAG A;  2R93 L;  1YUZ A;  3S17 L;  2PSM C;  4AHW A;  2EY4 E;  1RDG A;  1NXE A;  1B2O A;  2C6B A;  1TWG L;  2B63 L;  2Y0S P;  5FJ8 L;  2M6P A;  4YWL A;  2B5I D;  3PIP 1;  4GS7 D;  1RB9 A;  1SMM A;  1Z92 B;  1I50 L;  5MFZ A;  2R7Z L;  4AI0 A;  5MGN A;  1IRN A;  8RXN A;  1DVB A;  3PKI A;  3KYW A;  2JA7 L;  5IYD L;  2AYJ A;  3I4N L;  1BRF A;  3HOU L;  2XJQ A;  4AHY A;  5EIN C;  1C09 A;  3B0A B;  2XJT A;  5AI3 A;  1QCV A;  3GTK L;  4X6A L;  3S15 L;  5MLC 3;  3GTG L;  5H1S c;  4JAE A;  6RXN A;  4C3I L;  1LKM A;  3P8B A;  5GAD c;  4C3J L;  1LTL A;  4G6B A;  3ZG6 A;  5AN9 H;  2Z3Q B;  2PYA A;  4A3I L;  4AR5 A;  2Z3R B;  1IW7 D;  5M3F L;  2AUS B;  2E2I L;  5RXN A;  3K35 A;  3IU3 I;  3RZ6 A;  3MSU A;  5FLM L;  3PO2 L;  7RXN A;  1T9P A;  2VL6 A;  5EIO C;  5M5W L;  3S2H L;  1RYT A;  1LKP A;  3KYY A;  4AHX A;  1RDV A;  3I4M L;  1H7V A;  5DM6 1;  1VZH A;  5DM7 1;  3S1Q L;  5GAG c;  2NVT L;  1B13 A;  3PL5 A;  3VPB E;  4B8C D;  4AR4 A;  3KYX A;  2ERJ A;  1SFO L;  2M4V A;  4A3L L;  4JAF A;  4POF A;  4V19 6;  1FHH A;  1IU6 A;  2WB1 P;  1NNQ A;  2HR5 A;  3LWR B;  1IU5 A;  2RFK B;  3RZT A;  2M4Y A;  4A93 L;  3LWQ B;  1SMW A;  4BBR L;  3KYU A;  2HVY C;  3PIO 1;  1VZG A;  3P2A A;  2XJV A;  5M3M L;  1F4L A;  2A68 D;  3PZA A;  2CKC A;  3WWN B;  2XJS A;  1T9O A;  2VUM L;  1IRO A;  2CR8 A;  2PVE A;  4A3D L;  3J7Z 1;  1QQT A;  5C4J L;  4K9F A;  3M3Y L;  4AI2 A;  4BXX L;  2JA6 L;  3WWL A;  5JVG 1;  5IY0 A;  2E2J L;  3NFP I;  5C44 L;  2M6O A;  1R9T L;  2V3B B;  4U67 1;  2O5J D;  2MS3 A;  1PFU A;  2WAQ P;  4BY1 L;  4AHZ A;  2C6A A;  3S1M L;  1CAD A;  4A3G L;  5C3E L;  4ZN3 B;  1YUX A;  3FDJ A;  1TWC L;  4TPU A;  2PMZ P;  4LHL A;  3QQC E;  1WJV A;  3S2D L;  3S1R L;  3RZD L;  5MF6 A;  3H0G L;  1FHM A;  4QIW P;  1TWF L;  5IP7 L;  5IP9 L;  1DX8 A;  3PKJ A;  1CAA A;  5GAH c;  3H9B A;  2NVX L;  2AQC A;  3GTL L;  1YK4 A;  3RYG A;  4A3K L;  3HOW L;  2J9U B;  4C3H L;  3HAX C;  3JR7 A;  4BBS L;  4AR3 A;  1JYB A;  5IYC L;  3H3V M;  4AR6 A;  3QVD A;  2RDV A;  5M5X L;  3A44 A;  3PO3 L;  1PFY A;  3S16 L;  2V0F A;  3GTO L;  1B2J A;  3RZO L;  2H12 A;  2E2H L;  1Y1V L;  3HOV L;  4BY7 L;  3HOX L;  4WFN 1;  2A69 D;  4AYB P;  1R0J A;  2V0E A;  3LPE B;  2PPT A;  2KKD A;  3B08 B;  2K2D A;  3GTJ L;  2ERS A;  1WCM L;  4A3M L;  3SS2 A;  3LNL A;  4Y7N L;  4ME3 A;  5JVH 1;  3K7A L;  2R92 L;  4JAD A;  4Y52 L;  3M4O L;  5M5Y L;  1PFW A;  1S30 A;  2GMG A;  1Y1W L;  1I3Q L;  4LHN A;  2ZIX A;  3CQZ L;  2KN9 A;  5MFP A;  1R0G A;  3LWP B;  1R0H A;  1K83 L;  4A3B L;  2XJR A;  5C4X L;  1BFY A;  2JI3 A; 
#chains in the Genus database with same CATH homology
 5DM7 1;  1LKO A;  5GAG c;  1T9Q A;  3MPS A;  1VZI A;  4ZN1 B;  1B13 A;  1S2Z A;  4JAG A;  2A6E D;  1R0I A;  5MF6 A;  1OWB A;  3VPB E;  1YUZ A;  4B8C D;  4AR4 A;  3KYX A;  1FHM A;  1YV1 A;  2ERJ A;  2PSM C;  4AHW A;  1R0F A;  1RDG A;  1DX8 A;  1NXE A;  3PKJ A;  3PWF A;  1CAA A;  2CKA A;  1B2O A;  2L0Z A;  5GAH c;  2C6B A;  2M4V A;  4E6Y A;  2M6P A;  4YWL A;  4JAF A;  4RXN A;  2B5I D;  4POF A;  3PIP 1;  4V19 6;  1FHH A;  4GS7 D;  1YK4 A;  1RB9 A;  1IU6 A;  3RYG A;  1SMM A;  1NXG A;  1Z92 B;  2J9U B;  1NNQ A;  5MFZ A;  2HR5 A;  1IU5 A;  3RZT A;  4AR3 A;  2M4Y A;  4AI0 A;  1JYB A;  5MGN A;  1IRN A;  1SMW A;  5AI2 A;  8RXN A;  1DVB A;  3PKI A;  3KYU A;  4AR6 A;  3QVD A;  5GAE c;  2RDV A;  3KYW A;  3PIO 1;  1OWC A;  4POG A;  3A44 A;  1VZG A;  1ODH A;  2AYJ A;  1BRF A;  2JI2 A;  4UY8 1;  2XJQ A;  3P2A A;  4AHY A;  1BQ8 A;  5EIN C;  2V0F A;  2XJV A;  1E8J A;  1C09 A;  3B0A B;  1BFY A;  2XJT A;  5AI3 A;  1QCV A;  1B2J A;  2A68 D;  1BQ9 A;  2XJU A;  3PZA A;  1S24 A;  1ZRP A;  2H12 A;  5MLC 3;  2NYD A;  5H1S c;  2CKC A;  3WWN B;  2XJS A;  1T9O A;  1SMU A;  4JAE A;  6RXN A;  1IRO A;  2CR8 A;  2PVE A;  2QL0 A;  3J7Z 1;  1B71 A;  1LKM A;  4K9F A;  4AI1 A;  4WFN 1;  2A69 D;  1R0J A;  4AI2 A;  2V0E A;  3P8B A;  3WWL A;  5JVG 1;  3LPE B;  5IY0 A;  2PPT A;  2A6H D;  2DSX A;  2KKD A;  5GAD c;  3B08 B;  3NFP I;  1LTL A;  4G6B A;  3ZG6 A;  2K2D A;  2ERS A;  2M6O A;  2V3B B;  4XXB B;  1BE7 A;  2PVX A;  3SS2 A;  3LNL A;  4ME3 A;  4XGH A;  5JVH 1;  5AN9 H;  1RYQ A;  2Z3Q B;  4U67 1;  1YK5 A;  2PYA A;  2O5J D;  1RWD A;  4JAD A;  4AR5 A;  4AI3 A;  2MS3 A;  2Z3R B;  2BE5 D;  1IW7 D;  1S30 A;  2GMG A;  2LCQ A;  4AHZ A;  2C6A A;  5K2M E;  1CAD A;  4LHN A;  5RXN A;  3K35 A;  1VCX A;  3IU3 I;  3KYV A;  3RZ6 A;  4ZN3 B;  1YUX A;  2ZIX A;  3MSU A;  1QYB A;  7RXN A;  1T9P A;  4TPU A;  2KN9 A;  5MFP A;  1R0G A;  2VL6 A;  5EIO C;  2XJP A;  1RYT A;  1LKP A;  2JI1 A;  4LHL A;  3KYY A;  4TVM A;  4YWM A;  1R0H A;  4AHX A;  3QQC E;  1RDV A;  1WJV A;  1H7V A;  2XJR A;  3J7Y 1;  5DM6 1;  1VZH A;  2JI3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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