1W24A

Crystal structure of human vps29
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
182
structure length
180
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Human Vacuolar Protein Sorting Protein 29 Reveals a Phosphodiesterase/Nuclease-Like Fold and Two Protein-Protein Interaction Sites.
pubmed doi rcsb
molecule tags Cytoplasmic protein
source organism Homo sapiens
molecule keywords VACUOLAR PROTEIN SORTING PROTEIN 29
total genus 50
structure length 180
sequence length 182
ec nomenclature
pdb deposition date 2004-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1w24A00
4O43A 4J6OA 3RQZA 1S70A 3JYFA 4YKEA 3ZU0A 1XZWA 4LTYA 3RL3A 4DT2A 1QHWA 4H2BA 4LU9A 1HO5A 2QJCA 1G5BA 4H2GA 4FBQA 5JPEA 3H63A 1FJMA 2O8AA 4H1YP 4ORCA 4ORAA 4KBPA 2A22A 4JA9A 3K7WC 3KBPA 1HPUA 4I5LC 4B2OA 4H2FA 3QFKA 1S8EA 4TUIA 5JJTA 3H66A 2WDDA 1S95A 3PSOA 4OR9A 3THNA 1HP1A 2IAEC 3ICFA 1SU1A 5EQVA 3E7BA 4ORBA 3H64A 5J28A 3QFNA 3RL5A 1OIEA 1WAO1 3GVEA 2NXFA 2ZBMA 3QFOA 3DSDA 3K7VC 4IL1A 1MF8A 3DSCA 3N5UA 1OIDA 3QG5C 4FBKA 4TUGA 4V0XA 3PSNA 3FGAC 4WWLA 4O24A 3THOB 4UT2A 1S3NA 4DHLA 2R17A 1V73A 1UTEA 3E7AA 2Z72A 2QFPA 1T70A 1USHA 2Q8UA 3CK2A 4Q7FA 2P6BA 5F3WA 3IB8A 1U32A 5HPEA 2DFJA 2HY1A 2WDCA 2YVTA 4DSYA 5IOHA 1IT6A 3C5WC 3HVQA 4I5NC 1TCOA 4FCXA 1UF3A 1S3LA 2Z06A 3H67A 2BCDA 1T71A 3H69A 4UT3B 3LL8A 4M0VA 4F0ZA 4JA7A 4XPNA 2NYLC 4V0VA 2KKNA 2AHDA 4HD0A 1WARA 1QFCA 2CV9A 3QFMA 4ZX2A 3IVDA 4UWQA 3H62B 4G9JA 4V0WA 2NPPC 4LACC 5B8IA 3C9FA 1M63A 5INBA 4MOVA 4MP0A 1S3MA 2O8GA 2XMOA 2USHA 4H1SA 4H2IA 3T1IA 3ZTVA 1NNWA 2QFRA 2WDEA 2HYPA 3V4YA 2WDFA 1OI8A 3AV0A 5JPFA 4O4KA 1KBPA 2NYMC 3H60A 4FBWA 3DW8C 1W24A 1JK7A 3IB7A 4KKZA 4UT3A 2HYOA 1XM7A 3IVEA 3TGHA 3H61A 3EGGA 1AUIA 2IE4C 3AUZA 2JOGA 4O5GA 5C1VA 1Z2WA 3H68A 5DNYA 5GTUA 4IYPC 1Z2XA 2BDXA 2IE3C 3EGHA 3P71C 4ZVZA 2Z1AA 4MOYA 4NZVA 2BQ8X 2GJUA 3RL4A 1II7A
chains in the Genus database with same CATH superfamily
4O43A 4J6OA 3RQZA 1S70A 3JYFA 4YKEA 3ZU0A 1XZWA 4LTYA 3RL3A 4DT2A 1QHWA 4H2BA 4LU9A 1HO5A 2QJCA 1G5BA 4H2GA 4FBQA 5JPEA 3H63A 1FJMA 2O8AA 4H1YP 4ORCA 4ORAA 4KBPA 2A22A 4JA9A 3K7WC 3KBPA 1HPUA 4I5LC 4B2OA 4H2FA 3E0JA 3QFKA 1S8EA 4TUIA 5JJTA 3H66A 2WDDA 1S95A 3PSOA 4OR9A 3THNA 1HP1A 2IAEC 3ICFA 2ZOAA 2DXNA 1SU1A 5EQVA 3E7BA 4ORBA 3H64A 5J28A 3QFNA 3RL5A 1OIEA 1WAO1 3GVEA 2NXFA 2ZBMA 3QFOA 3DSDA 3K7VC 4IL1A 1MF8A 3DSCA 3N5UA 1OIDA 3QG5C 4FBKA 4TUGA 4V0XA 3PSNA 3FGAC 4WWLA 4O24A 3THOB 4UT2A 1S3NA 4DHLA 2R17A 2YEQA 1V73A 1UTEA 3E7AA 2Z72A 2QFPA 1T70A 1USHA 2Q8UA 3CK2A 4Q7FA 2P6BA 5F3WA 3IB8A 1U32A 5HPEA 2DFJA 2HY1A 2WDCA 2YVTA 4DSYA 5IOHA 1IT6A 3C5WC 3HVQA 2DXLA 4I5NC 1TCOA 4FCXA 1UF3A 1S3LA 2Z06A 3H67A 2BCDA 1T71A 3H69A 4UT3B 3LL8A 4M0VA 4F0ZA 4JA7A 4XPNA 2NYLC 4V0VA 2KKNA 2AHDA 4HD0A 1WARA 1QFCA 2CV9A 3QFMA 4ZX2A 3IVDA 4UWQA 3H62B 4G9JA 4V0WA 2NPPC 4LACC 5B8IA 3C9FA 1M63A 5INBA 4MOVA 4MP0A 1S3MA 2O8GA 2XMOA 2USHA 2ZO9B 4H1SA 4H2IA 3T1IA 3ZTVA 1NNWA 2QFRA 2WDEA 2HYPA 3V4YA 2WDFA 1OI8A 3AV0A 5JPFA 4O4KA 1KBPA 2NYMC 3H60A 4FBWA 3DW8C 1W24A 1JK7A 3IB7A 4KKZA 4UT3A 2HYOA 1XM7A 3IVEA 3TGHA 3H61A 3EGGA 1AUIA 2IE4C 3D03A 3AUZA 2JOGA 4O5GA 5C1VA 1Z2WA 3H68A 5DNYA 5GTUA 4IYPC 3FLOA 1Z2XA 2BDXA 2IE3C 3EGHA 3P71C 4ZVZA 2Z1AA 4MOYA 4NZVA 2BQ8X 2GJUA 3RL4A 1II7A
chains in the Genus database with same CATH topology
4O43A 4J6OA 3RQZA 1S70A 3JYFA 4YKEA 3ZU0A 1XZWA 4LTYA 3RL3A 4DT2A 1QHWA 4H2BA 4LU9A 1HO5A 2QJCA 1G5BA 4H2GA 4FBQA 5JPEA 3H63A 1FJMA 2O8AA 4H1YP 4ORCA 4ORAA 4KBPA 2A22A 4JA9A 3K7WC 3KBPA 1HPUA 4I5LC 4B2OA 4H2FA 3E0JA 3QFKA 1S8EA 4TUIA 5JJTA 3H66A 2WDDA 1S95A 3PSOA 4OR9A 3THNA 1HP1A 2IAEC 3ICFA 2ZOAA 2DXNA 1SU1A 5EQVA 3E7BA 4ORBA 3H64A 5J28A 3QFNA 3RL5A 1OIEA 1WAO1 3GVEA 2NXFA 2ZBMA 3QFOA 3DSDA 3K7VC 4IL1A 1MF8A 3DSCA 3N5UA 1OIDA 3QG5C 4FBKA 4TUGA 4V0XA 3PSNA 3FGAC 4WWLA 4O24A 3THOB 4UT2A 1S3NA 4DHLA 2R17A 2YEQA 1V73A 1UTEA 3E7AA 2Z72A 2QFPA 1T70A 1USHA 2Q8UA 3CK2A 4Q7FA 2P6BA 5F3WA 3IB8A 1U32A 5HPEA 2DFJA 2HY1A 2WDCA 2YVTA 4DSYA 5IOHA 1IT6A 3C5WC 3HVQA 2DXLA 4I5NC 1TCOA 4FCXA 1UF3A 1S3LA 2Z06A 3H67A 2BCDA 1T71A 3H69A 4UT3B 3LL8A 4M0VA 4F0ZA 4JA7A 4XPNA 2NYLC 4V0VA 2KKNA 2AHDA 4HD0A 1WARA 1QFCA 2CV9A 3QFMA 4ZX2A 3IVDA 4UWQA 3H62B 4G9JA 4V0WA 2NPPC 4LACC 5B8IA 3C9FA 1M63A 5INBA 4MOVA 4MP0A 1S3MA 2O8GA 2XMOA 2USHA 2ZO9B 4H1SA 4H2IA 3T1IA 3ZTVA 1NNWA 2QFRA 2WDEA 2HYPA 3V4YA 2WDFA 1OI8A 3AV0A 5JPFA 4O4KA 1KBPA 2NYMC 3H60A 4FBWA 3DW8C 1W24A 1JK7A 3IB7A 4KKZA 4UT3A 2HYOA 1XM7A 3IVEA 3TGHA 3H61A 3EGGA 1AUIA 2IE4C 3D03A 3AUZA 2JOGA 4O5GA 5C1VA 1Z2WA 3H68A 5DNYA 5GTUA 4IYPC 3FLOA 1Z2XA 2BDXA 2IE3C 3EGHA 3P71C 4ZVZA 2Z1AA 4MOYA 4NZVA 2BQ8X 2GJUA 3RL4A 1II7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O43 A;  4J6O A;  3RQZ A;  1S70 A;  3JYF A;  4YKE A;  3ZU0 A;  1XZW A;  4LTY A;  3RL3 A;  4DT2 A;  1QHW A;  4H2B A;  4LU9 A;  1HO5 A;  2QJC A;  1G5B A;  4H2G A;  4FBQ A;  5JPE A;  3H63 A;  1FJM A;  2O8A A;  4H1Y P;  4ORC A;  4ORA A;  4KBP A;  2A22 A;  4JA9 A;  3K7W C;  3KBP A;  1HPU A;  4I5L C;  4B2O A;  4H2F A;  3QFK A;  1S8E A;  4TUI A;  5JJT A;  3H66 A;  2WDD A;  1S95 A;  3PSO A;  4OR9 A;  3THN A;  1HP1 A;  2IAE C;  3ICF A;  1SU1 A;  5EQV A;  3E7B A;  4ORB A;  3H64 A;  5J28 A;  3QFN A;  3RL5 A;  1OIE A;  1WAO 1;  3GVE A;  2NXF A;  2ZBM A;  3QFO A;  3DSD A;  3K7V C;  4IL1 A;  1MF8 A;  3DSC A;  3N5U A;  1OID A;  3QG5 C;  4FBK A;  4TUG A;  4V0X A;  3PSN A;  3FGA C;  4WWL A;  4O24 A;  3THO B;  4UT2 A;  1S3N A;  4DHL A;  2R17 A;  1V73 A;  1UTE A;  3E7A A;  2Z72 A;  2QFP A;  1T70 A;  1USH A;  2Q8U A;  3CK2 A;  4Q7F A;  2P6B A;  5F3W A;  3IB8 A;  1U32 A;  5HPE A;  2DFJ A;  2HY1 A;  2WDC A;  2YVT A;  4DSY A;  5IOH A;  1IT6 A;  3C5W C;  3HVQ A;  4I5N C;  1TCO A;  4FCX A;  1UF3 A;  1S3L A;  2Z06 A;  3H67 A;  2BCD A;  1T71 A;  3H69 A;  4UT3 B;  3LL8 A;  4M0V A;  4F0Z A;  4JA7 A;  4XPN A;  2NYL C;  4V0V A;  2KKN A;  2AHD A;  4HD0 A;  1WAR A;  1QFC A;  2CV9 A;  3QFM A;  4ZX2 A;  3IVD A;  4UWQ A;  3H62 B;  4G9J A;  4V0W A;  2NPP C;  4LAC C;  5B8I A;  3C9F A;  1M63 A;  5INB A;  4MOV A;  4MP0 A;  1S3M A;  2O8G A;  2XMO A;  2USH A;  4H1S A;  4H2I A;  3T1I A;  3ZTV A;  1NNW A;  2QFR A;  2WDE A;  2HYP A;  3V4Y A;  2WDF A;  1OI8 A;  3AV0 A;  5JPF A;  4O4K A;  1KBP A;  2NYM C;  3H60 A;  4FBW A;  3DW8 C;  1W24 A;  1JK7 A;  3IB7 A;  4KKZ A;  4UT3 A;  2HYO A;  1XM7 A;  3IVE A;  3TGH A;  3H61 A;  3EGG A;  1AUI A;  2IE4 C;  3AUZ A;  2JOG A;  4O5G A;  5C1V A;  1Z2W A;  3H68 A;  5DNY A;  5GTU A;  4IYP C;  1Z2X A;  2BDX A;  2IE3 C;  3EGH A;  3P71 C;  4ZVZ A;  2Z1A A;  4MOY A;  4NZV A;  2BQ8 X;  2GJU A;  3RL4 A;  1II7 A; 
#chains in the Genus database with same CATH topology
 4O43 A;  4J6O A;  3RQZ A;  1S70 A;  3JYF A;  4YKE A;  3ZU0 A;  1XZW A;  4LTY A;  3RL3 A;  4DT2 A;  1QHW A;  4H2B A;  4LU9 A;  1HO5 A;  2QJC A;  1G5B A;  4H2G A;  4FBQ A;  5JPE A;  3H63 A;  1FJM A;  2O8A A;  4H1Y P;  4ORC A;  4ORA A;  4KBP A;  2A22 A;  4JA9 A;  3K7W C;  3KBP A;  1HPU A;  4I5L C;  4B2O A;  4H2F A;  3E0J A;  3QFK A;  1S8E A;  4TUI A;  5JJT A;  3H66 A;  2WDD A;  1S95 A;  3PSO A;  4OR9 A;  3THN A;  1HP1 A;  2IAE C;  3ICF A;  2ZOA A;  2DXN A;  1SU1 A;  5EQV A;  3E7B A;  4ORB A;  3H64 A;  5J28 A;  3QFN A;  3RL5 A;  1OIE A;  1WAO 1;  3GVE A;  2NXF A;  2ZBM A;  3QFO A;  3DSD A;  3K7V C;  4IL1 A;  1MF8 A;  3DSC A;  3N5U A;  1OID A;  3QG5 C;  4FBK A;  4TUG A;  4V0X A;  3PSN A;  3FGA C;  4WWL A;  4O24 A;  3THO B;  4UT2 A;  1S3N A;  4DHL A;  2R17 A;  2YEQ A;  1V73 A;  1UTE A;  3E7A A;  2Z72 A;  2QFP A;  1T70 A;  1USH A;  2Q8U A;  3CK2 A;  4Q7F A;  2P6B A;  5F3W A;  3IB8 A;  1U32 A;  5HPE A;  2DFJ A;  2HY1 A;  2WDC A;  2YVT A;  4DSY A;  5IOH A;  1IT6 A;  3C5W C;  3HVQ A;  2DXL A;  4I5N C;  1TCO A;  4FCX A;  1UF3 A;  1S3L A;  2Z06 A;  3H67 A;  2BCD A;  1T71 A;  3H69 A;  4UT3 B;  3LL8 A;  4M0V A;  4F0Z A;  4JA7 A;  4XPN A;  2NYL C;  4V0V A;  2KKN A;  2AHD A;  4HD0 A;  1WAR A;  1QFC A;  2CV9 A;  3QFM A;  4ZX2 A;  3IVD A;  4UWQ A;  3H62 B;  4G9J A;  4V0W A;  2NPP C;  4LAC C;  5B8I A;  3C9F A;  1M63 A;  5INB A;  4MOV A;  4MP0 A;  1S3M A;  2O8G A;  2XMO A;  2USH A;  2ZO9 B;  4H1S A;  4H2I A;  3T1I A;  3ZTV A;  1NNW A;  2QFR A;  2WDE A;  2HYP A;  3V4Y A;  2WDF A;  1OI8 A;  3AV0 A;  5JPF A;  4O4K A;  1KBP A;  2NYM C;  3H60 A;  4FBW A;  3DW8 C;  1W24 A;  1JK7 A;  3IB7 A;  4KKZ A;  4UT3 A;  2HYO A;  1XM7 A;  3IVE A;  3TGH A;  3H61 A;  3EGG A;  1AUI A;  2IE4 C;  3D03 A;  3AUZ A;  2JOG A;  4O5G A;  5C1V A;  1Z2W A;  3H68 A;  5DNY A;  5GTU A;  4IYP C;  3FLO A;  1Z2X A;  2BDX A;  2IE3 C;  3EGH A;  3P71 C;  4ZVZ A;  2Z1A A;  4MOY A;  4NZV A;  2BQ8 X;  2GJU A;  3RL4 A;  1II7 A; 
#chains in the Genus database with same CATH homology
 4O43 A;  4J6O A;  3RQZ A;  1S70 A;  3JYF A;  4YKE A;  3ZU0 A;  1XZW A;  4LTY A;  3RL3 A;  4DT2 A;  1QHW A;  4H2B A;  4LU9 A;  1HO5 A;  2QJC A;  1G5B A;  4H2G A;  4FBQ A;  5JPE A;  3H63 A;  1FJM A;  2O8A A;  4H1Y P;  4ORC A;  4ORA A;  4KBP A;  2A22 A;  4JA9 A;  3K7W C;  3KBP A;  1HPU A;  4I5L C;  4B2O A;  4H2F A;  3E0J A;  3QFK A;  1S8E A;  4TUI A;  5JJT A;  3H66 A;  2WDD A;  1S95 A;  3PSO A;  4OR9 A;  3THN A;  1HP1 A;  2IAE C;  3ICF A;  2ZOA A;  2DXN A;  1SU1 A;  5EQV A;  3E7B A;  4ORB A;  3H64 A;  5J28 A;  3QFN A;  3RL5 A;  1OIE A;  1WAO 1;  3GVE A;  2NXF A;  2ZBM A;  3QFO A;  3DSD A;  3K7V C;  4IL1 A;  1MF8 A;  3DSC A;  3N5U A;  1OID A;  3QG5 C;  4FBK A;  4TUG A;  4V0X A;  3PSN A;  3FGA C;  4WWL A;  4O24 A;  3THO B;  4UT2 A;  1S3N A;  4DHL A;  2R17 A;  2YEQ A;  1V73 A;  1UTE A;  3E7A A;  2Z72 A;  2QFP A;  1T70 A;  1USH A;  2Q8U A;  3CK2 A;  4Q7F A;  2P6B A;  5F3W A;  3IB8 A;  1U32 A;  5HPE A;  2DFJ A;  2HY1 A;  2WDC A;  2YVT A;  4DSY A;  5IOH A;  1IT6 A;  3C5W C;  3HVQ A;  2DXL A;  4I5N C;  1TCO A;  4FCX A;  1UF3 A;  1S3L A;  2Z06 A;  3H67 A;  2BCD A;  1T71 A;  3H69 A;  4UT3 B;  3LL8 A;  4M0V A;  4F0Z A;  4JA7 A;  4XPN A;  2NYL C;  4V0V A;  2KKN A;  2AHD A;  4HD0 A;  1WAR A;  1QFC A;  2CV9 A;  3QFM A;  4ZX2 A;  3IVD A;  4UWQ A;  3H62 B;  4G9J A;  4V0W A;  2NPP C;  4LAC C;  5B8I A;  3C9F A;  1M63 A;  5INB A;  4MOV A;  4MP0 A;  1S3M A;  2O8G A;  2XMO A;  2USH A;  2ZO9 B;  4H1S A;  4H2I A;  3T1I A;  3ZTV A;  1NNW A;  2QFR A;  2WDE A;  2HYP A;  3V4Y A;  2WDF A;  1OI8 A;  3AV0 A;  5JPF A;  4O4K A;  1KBP A;  2NYM C;  3H60 A;  4FBW A;  3DW8 C;  1W24 A;  1JK7 A;  3IB7 A;  4KKZ A;  4UT3 A;  2HYO A;  1XM7 A;  3IVE A;  3TGH A;  3H61 A;  3EGG A;  1AUI A;  2IE4 C;  3D03 A;  3AUZ A;  2JOG A;  4O5G A;  5C1V A;  1Z2W A;  3H68 A;  5DNY A;  5GTU A;  4IYP C;  3FLO A;  1Z2X A;  2BDX A;  2IE3 C;  3EGH A;  3P71 C;  4ZVZ A;  2Z1A A;  4MOY A;  4NZV A;  2BQ8 X;  2GJU A;  3RL4 A;  1II7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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