1DX8A

Rubredoxin from guillardia theta
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
70
structure length
70
Chain Sequence
MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta.
pubmed doi rcsb
molecule tags Electron transport
source organism Guillardia theta
molecule keywords RUBREDOXIN
total genus 6
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 1999-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1dx8A00
1IU6A 4AR4A 2RDVA 4RXNA 3KYXA 1VCXA 3QVDA 2LCQA 1T9OA 1QYBA 2M4YA 2KKDA 4TPUA 1T9PA 1LKPA 1YUZA 1BQ8A 1B2OA 2HR5A 1IROA 4AR6A 3KYVA 1B71A 1RWDA 3RYGA 1FHHA 1FHMA 1DX8A 5RXNA 2PVXA 1RDGA 4AR5A 1LKMA 1T9QA 1R0FA 2QL0A 4YWLA 5AI2A 1ZRPA 1C09A 3SS2A 1S2ZA 1R0GA 1CAAA 4POFA 2V3BB 4YWMA 3KYWA 1SMUA 1BFYA 1LTLA 3RZTA 1DVBA 4AR3A 2KN9A 2K2DA 1B13A 1RB9A 1H7VA 3KYYA 6RXNA 1CADA 2MS3A 7RXNA 1BQ9A 1IRNA 1R0HA 1YK4A 1IU5A 1S24A 3MPSA 3A44A 1SMWA 4POGA 1E8JA 1BRFA 1QCVA 1R0JA 2PVEA 3PWFA 2PYAA 4ME3A 2VL6A 1LKOA 1JYBA 5AI3A 1BE7A 2DSXA 1RDVA 3RZ6A 1SMMA 5IY0A 1RYTA 1NNQA 1YV1A 8RXNA 1S30A 4K9FA 1R0IA 1YK5A 2GMGA 1B2JA 3PZAA 3KYUA 1YUXA
chains in the Genus database with same CATH superfamily
3GTOL 3PKIA 5DM71 1NXGA 5GAHc 1SFOL 1ODHA 2LCQA 5C44L 2M4YA 3H9CA 2A6HD 5FLML 1R9TL 1I50L 1Z92B 4XGHA 3S1RL 2NYDA 2JI1A 5FJ8L 4A3KL 1FHHA 1NXEA 1DX8A 3FDJA 5RXNA 4UY81 3K35A 4AYBP 4AR5A 1WJVA 1PFUA 2WAQP 1R0FA 5M5XL 1ZRPA 3LWRB 1C09A 2HVYC 1VZGA 2XJSA 1R0GA 4POFA 2V3BB 4YWMA 4LHLA 1QQTA 3KYWA 4BY1L 1BFYA 1TWFL 2JI2A 2B63L 2VUML 2A6ED 3JR7A 1DVBA 2K2DA 5DM61 2JI3A 2CKAA 4A93L 1BQ9A 1IRNA 2ZIXA 3I4NL 4A3DL 4JAFA 3S16L 3M4OL 1S24A 4BY7L 3NFPI 3A44A 3PIO1 3I4ML 1SMWA 4BBRL 1BRFA 4GS7D 3GTPL 4JAEA 3S15L 2C6BA 5IYDL 1JYBA 5H1Sc 3GTKL 4ZN1B 1RDVA 3FKIL 3S1ML 1Y1WL 3J7Y1 2XJUA 1YK5A 1B2JA 4WFN1 4ZN3B 4JADA 2RDVA 3KYXA 2JA5L 1VCXA 1T9OA 2KKDA 4TPUA 2NVXL 1YUZA 2HR5A 2A69D 3LWOB 4AR6A 5EINC 1TWHL 4A3LL 2V0FA 1FHMA 1RDGA 1PFYA 1I3QL 2EY4E 4AHWA 3PKJA 3RZOL 2M6PA 3B0AB 2JA7L 1F4LA 5IYCL 1WCML 1CAAA 1K83L 3HJWB 4QIWP 3HJYB 4Y52L 2AUSB 3GTJL 4A3CL 4JAGA 1LTLA 3RZTA 3QQCE 3S17L 3S1QL 2PPTA 1VZIA 4C2M1 5MGNA 3KYYA 6RXNA 2B5ID 2MS3A 4E6YA 7RXNA 4A3BL 2BE5D 2NVTL 1PFVA 2A68D 2ERSA 3HOVL 3MPSA 5MF6A 4POGA 3RZDL 3GTGL 5JVH1 2RFKB 3CQZL 3M3YL 2PVEA 3H0GL 5M3FL 4AHZA 3H9BA 2V0EA 4BBSL 3PO3L 1BE7A 2DSXA 2AQCA 5IYBL 3B08B 5IY0A 1S30A 4U671 2GMGA 2WB1P 4A3GL 3PZAA 3HOWL 3HOZL 3KYUA 1IU6A 5K2ME 3S14L 2YU9L 3LWPB 4BXXL 1QYBA 4AHXA 1T9PA 1LKPA 2H12A 3LNLA 4AI0A 2R93L 3H97A 2XJVA 3IU3I 1I6HL 3KYVA 1B71A 5IP7L 3RYGA 5AN9H 4A3FL 5C3EL 5GAGc 2Z3RB 1LKMA 1T9QA 2PMZP 4YWLA 5AI2A 3GTLL 1PFWA 3LWVB 3WWLA 4AI2A 4Y7NL 1S2ZA 3HAXC 3H3VM 3MSUA 2PSMC 3VPBE 1P7PA 2M4VA 5EIOC 4AR3A 2KN9A 1RB9A 1H7VA 3P8BA 2M6OA 1CADA 2R92L 2Y0SP 3PO2L 1QCVA 2R7ZL 1Y1VL 3PWFA 3HOXL 3WWNB 1LKOA 2XJQA 4G6BA 3ZG6A 2O5JD 3K7AL 3RZ6A 2E2HL 1SMMA 4A3ML 2CR8A 2AYJA 2L0ZA 4C3IL 4TVMA 1TWCL 2XJRA 4K9FA 3HKZP 5IP9L 1YUXA 4AI1A 5GAEc 4AR4A 2NVQL 4RXNA 4A3IL 3GTML 1IW7D 3QVDA 5MFZA 1BQ8A 3S1NL 1B2OA 1IROA 2E2IL 1RWDA 4C3HL 2PVXA 4C3JL 2ERJA 2XJTA 5MLC3 3H99A 5M5WL 2QL0A 3HOUL 3MQKB 3SS2A 1TWAL 2E2JL 1SMUA 4X6AL 1RYQA 2XJPA 1B13A 5C4JL 2C6AA 1VZHA 2CKCA 2J9UB 3P2AA 1R0HA 1YK4A 1IU5A 5M5YL 4XXBB 3J7Z1 4AHYA 1E8JA 5GADc 2NVYL 2APOB 4AI3A 4A3JL 1R0JA 1OWCA 3S2HL 1OWBA 2PYAA 1PZXA 4ME3A 3LWQB 2VL6A 3LPEB 5M3ML 5AI3A 3S2DL 4B8CD 5MFPA 4V196 5JVG1 5C4XL 2Z3QB 4LHNA 1RYTA 4A3EL 1TWGL 1NNQA 1YV1A 8RXNA 3GTQL 1R0IA 3HOYL 3PL5A 2JA8L 2JA6L 3PIP1
chains in the Genus database with same CATH topology
4ZN3B 3PKIA 1IU6A 4JADA 5DM71 4AR4A 5K2ME 1NXGA 2RDVA 4RXNA 3KYXA 5GAHc 1VCXA 1IW7D 1ODHA 3QVDA 2LCQA 1T9OA 1QYBA 2M4YA 5MFZA 2KKDA 4TPUA 1T9PA 4AHXA 2A6HD 3PIP1 1LKPA 1YUZA 2H12A 1BQ8A 1B2OA 2HR5A 1IROA 3LNLA 4AI0A 1Z92B 2A69D 4XGHA 2XJVA 3IU3I 2NYDA 2JI1A 4AR6A 3KYVA 5EINC 1B71A 1RWDA 3RYGA 2V0FA 5AN9H 1FHHA 1FHMA 1NXEA 1DX8A 5GAGc 5RXNA 4UY81 2PVXA 1RDGA 3K35A 2ERJA 2Z3RB 4AR5A 1WJVA 2XJTA 5MLC3 1LKMA 1T9QA 1R0FA 2QL0A 4YWLA 4AHWA 5AI2A 3PKJA 1ZRPA 2M6PA 1C09A 3WWLA 4AI2A 3B0AB 3SS2A 1VZGA 2XJSA 1S2ZA 1R0GA 1CAAA 4POFA 2V3BB 4YWMA 4LHLA 3MSUA 3KYWA 1SMUA 1BFYA 2PSMC 2JI2A 4JAGA 3VPBE 1LTLA 3RZTA 3QQCE 1RYQA 2A6ED 2M4VA 2XJPA 2PPTA 1VZIA 1DVBA 5EIOC 5MGNA 4AR3A 2KN9A 2K2DA 1B13A 1RB9A 1H7VA 5DM61 2C6AA 3P8BA 2JI3A 2M6OA 1VZHA 3KYYA 2CKCA 6RXNA 2CKAA 1CADA 2B5ID 2MS3A 4E6YA 7RXNA 1BQ9A 1IRNA 2J9UB 2ZIXA 2BE5D 1YK4A 3P2AA 1R0HA 4JAFA 1IU5A 2A68D 2ERSA 4XXBB 3J7Z1 1S24A 3MPSA 3NFPI 4AHYA 3A44A 3PIO1 1SMWA 5MF6A 4POGA 1E8JA 5GADc 1BRFA 4AI3A 5JVH1 1QCVA 1R0JA 1OWCA 2PVEA 3PWFA 1OWBA 3WWNB 2PYAA 4JAEA 4ME3A 4AHZA 2C6BA 2VL6A 1LKOA 3LPEB 2V0EA 1JYBA 5H1Sc 5AI3A 2XJQA 4B8CD 5MFPA 4G6BA 3ZG6A 4ZN1B 1BE7A 2DSXA 5JVG1 1RDVA 4V196 2O5JD 2Z3QB 3RZ6A 1SMMA 3B08B 4LHNA 5IY0A 1RYTA 2CR8A 1NNQA 1YV1A 2AYJA 8RXNA 1S30A 2L0ZA 3J7Y1 4TVMA 2XJUA 2XJRA 4K9FA 4U671 1R0IA 1YK5A 2GMGA 1B2JA 3PZAA 3KYUA 1YUXA 4WFN1 4AI1A 5GAEc 4GS7D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IU6 A;  4AR4 A;  2RDV A;  4RXN A;  3KYX A;  1VCX A;  3QVD A;  2LCQ A;  1T9O A;  1QYB A;  2M4Y A;  2KKD A;  4TPU A;  1T9P A;  1LKP A;  1YUZ A;  1BQ8 A;  1B2O A;  2HR5 A;  1IRO A;  4AR6 A;  3KYV A;  1B71 A;  1RWD A;  3RYG A;  1FHH A;  1FHM A;  1DX8 A;  5RXN A;  2PVX A;  1RDG A;  4AR5 A;  1LKM A;  1T9Q A;  1R0F A;  2QL0 A;  4YWL A;  5AI2 A;  1ZRP A;  1C09 A;  3SS2 A;  1S2Z A;  1R0G A;  1CAA A;  4POF A;  2V3B B;  4YWM A;  3KYW A;  1SMU A;  1BFY A;  1LTL A;  3RZT A;  1DVB A;  4AR3 A;  2KN9 A;  2K2D A;  1B13 A;  1RB9 A;  1H7V A;  3KYY A;  6RXN A;  1CAD A;  2MS3 A;  7RXN A;  1BQ9 A;  1IRN A;  1R0H A;  1YK4 A;  1IU5 A;  1S24 A;  3MPS A;  3A44 A;  1SMW A;  4POG A;  1E8J A;  1BRF A;  1QCV A;  1R0J A;  2PVE A;  3PWF A;  2PYA A;  4ME3 A;  2VL6 A;  1LKO A;  1JYB A;  5AI3 A;  1BE7 A;  2DSX A;  1RDV A;  3RZ6 A;  1SMM A;  5IY0 A;  1RYT A;  1NNQ A;  1YV1 A;  8RXN A;  1S30 A;  4K9F A;  1R0I A;  1YK5 A;  2GMG A;  1B2J A;  3PZA A;  3KYU A;  1YUX A; 
#chains in the Genus database with same CATH topology
 3GTO L;  3PKI A;  5DM7 1;  1NXG A;  5GAH c;  1SFO L;  1ODH A;  2LCQ A;  5C44 L;  2M4Y A;  3H9C A;  2A6H D;  5FLM L;  1R9T L;  1I50 L;  1Z92 B;  4XGH A;  3S1R L;  2NYD A;  2JI1 A;  5FJ8 L;  4A3K L;  1FHH A;  1NXE A;  1DX8 A;  3FDJ A;  5RXN A;  4UY8 1;  3K35 A;  4AYB P;  4AR5 A;  1WJV A;  1PFU A;  2WAQ P;  1R0F A;  5M5X L;  1ZRP A;  3LWR B;  1C09 A;  2HVY C;  1VZG A;  2XJS A;  1R0G A;  4POF A;  2V3B B;  4YWM A;  4LHL A;  1QQT A;  3KYW A;  4BY1 L;  1BFY A;  1TWF L;  2JI2 A;  2B63 L;  2VUM L;  2A6E D;  3JR7 A;  1DVB A;  2K2D A;  5DM6 1;  2JI3 A;  2CKA A;  4A93 L;  1BQ9 A;  1IRN A;  2ZIX A;  3I4N L;  4A3D L;  4JAF A;  3S16 L;  3M4O L;  1S24 A;  4BY7 L;  3NFP I;  3A44 A;  3PIO 1;  3I4M L;  1SMW A;  4BBR L;  1BRF A;  4GS7 D;  3GTP L;  4JAE A;  3S15 L;  2C6B A;  5IYD L;  1JYB A;  5H1S c;  3GTK L;  4ZN1 B;  1RDV A;  3FKI L;  3S1M L;  1Y1W L;  3J7Y 1;  2XJU A;  1YK5 A;  1B2J A;  4WFN 1;  4ZN3 B;  4JAD A;  2RDV A;  3KYX A;  2JA5 L;  1VCX A;  1T9O A;  2KKD A;  4TPU A;  2NVX L;  1YUZ A;  2HR5 A;  2A69 D;  3LWO B;  4AR6 A;  5EIN C;  1TWH L;  4A3L L;  2V0F A;  1FHM A;  1RDG A;  1PFY A;  1I3Q L;  2EY4 E;  4AHW A;  3PKJ A;  3RZO L;  2M6P A;  3B0A B;  2JA7 L;  1F4L A;  5IYC L;  1WCM L;  1CAA A;  1K83 L;  3HJW B;  4QIW P;  3HJY B;  4Y52 L;  2AUS B;  3GTJ L;  4A3C L;  4JAG A;  1LTL A;  3RZT A;  3QQC E;  3S17 L;  3S1Q L;  2PPT A;  1VZI A;  4C2M 1;  5MGN A;  3KYY A;  6RXN A;  2B5I D;  2MS3 A;  4E6Y A;  7RXN A;  4A3B L;  2BE5 D;  2NVT L;  1PFV A;  2A68 D;  2ERS A;  3HOV L;  3MPS A;  5MF6 A;  4POG A;  3RZD L;  3GTG L;  5JVH 1;  2RFK B;  3CQZ L;  3M3Y L;  2PVE A;  3H0G L;  5M3F L;  4AHZ A;  3H9B A;  2V0E A;  4BBS L;  3PO3 L;  1BE7 A;  2DSX A;  2AQC A;  5IYB L;  3B08 B;  5IY0 A;  1S30 A;  4U67 1;  2GMG A;  2WB1 P;  4A3G L;  3PZA A;  3HOW L;  3HOZ L;  3KYU A;  1IU6 A;  5K2M E;  3S14 L;  2YU9 L;  3LWP B;  4BXX L;  1QYB A;  4AHX A;  1T9P A;  1LKP A;  2H12 A;  3LNL A;  4AI0 A;  2R93 L;  3H97 A;  2XJV A;  3IU3 I;  1I6H L;  3KYV A;  1B71 A;  5IP7 L;  3RYG A;  5AN9 H;  4A3F L;  5C3E L;  5GAG c;  2Z3R B;  1LKM A;  1T9Q A;  2PMZ P;  4YWL A;  5AI2 A;  3GTL L;  1PFW A;  3LWV B;  3WWL A;  4AI2 A;  4Y7N L;  1S2Z A;  3HAX C;  3H3V M;  3MSU A;  2PSM C;  3VPB E;  1P7P A;  2M4V A;  5EIO C;  4AR3 A;  2KN9 A;  1RB9 A;  1H7V A;  3P8B A;  2M6O A;  1CAD A;  2R92 L;  2Y0S P;  3PO2 L;  1QCV A;  2R7Z L;  1Y1V L;  3PWF A;  3HOX L;  3WWN B;  1LKO A;  2XJQ A;  4G6B A;  3ZG6 A;  2O5J D;  3K7A L;  3RZ6 A;  2E2H L;  1SMM A;  4A3M L;  2CR8 A;  2AYJ A;  2L0Z A;  4C3I L;  4TVM A;  1TWC L;  2XJR A;  4K9F A;  3HKZ P;  5IP9 L;  1YUX A;  4AI1 A;  5GAE c;  4AR4 A;  2NVQ L;  4RXN A;  4A3I L;  3GTM L;  1IW7 D;  3QVD A;  5MFZ A;  1BQ8 A;  3S1N L;  1B2O A;  1IRO A;  2E2I L;  1RWD A;  4C3H L;  2PVX A;  4C3J L;  2ERJ A;  2XJT A;  5MLC 3;  3H99 A;  5M5W L;  2QL0 A;  3HOU L;  3MQK B;  3SS2 A;  1TWA L;  2E2J L;  1SMU A;  4X6A L;  1RYQ A;  2XJP A;  1B13 A;  5C4J L;  2C6A A;  1VZH A;  2CKC A;  2J9U B;  3P2A A;  1R0H A;  1YK4 A;  1IU5 A;  5M5Y L;  4XXB B;  3J7Z 1;  4AHY A;  1E8J A;  5GAD c;  2NVY L;  2APO B;  4AI3 A;  4A3J L;  1R0J A;  1OWC A;  3S2H L;  1OWB A;  2PYA A;  1PZX A;  4ME3 A;  3LWQ B;  2VL6 A;  3LPE B;  5M3M L;  5AI3 A;  3S2D L;  4B8C D;  5MFP A;  4V19 6;  5JVG 1;  5C4X L;  2Z3Q B;  4LHN A;  1RYT A;  4A3E L;  1TWG L;  1NNQ A;  1YV1 A;  8RXN A;  3GTQ L;  1R0I A;  3HOY L;  3PL5 A;  2JA8 L;  2JA6 L;  3PIP 1; 
#chains in the Genus database with same CATH homology
 4ZN3 B;  3PKI A;  1IU6 A;  4JAD A;  5DM7 1;  4AR4 A;  5K2M E;  1NXG A;  2RDV A;  4RXN A;  3KYX A;  5GAH c;  1VCX A;  1IW7 D;  1ODH A;  3QVD A;  2LCQ A;  1T9O A;  1QYB A;  2M4Y A;  5MFZ A;  2KKD A;  4TPU A;  1T9P A;  4AHX A;  2A6H D;  3PIP 1;  1LKP A;  1YUZ A;  2H12 A;  1BQ8 A;  1B2O A;  2HR5 A;  1IRO A;  3LNL A;  4AI0 A;  1Z92 B;  2A69 D;  4XGH A;  2XJV A;  3IU3 I;  2NYD A;  2JI1 A;  4AR6 A;  3KYV A;  5EIN C;  1B71 A;  1RWD A;  3RYG A;  2V0F A;  5AN9 H;  1FHH A;  1FHM A;  1NXE A;  1DX8 A;  5GAG c;  5RXN A;  4UY8 1;  2PVX A;  1RDG A;  3K35 A;  2ERJ A;  2Z3R B;  4AR5 A;  1WJV A;  2XJT A;  5MLC 3;  1LKM A;  1T9Q A;  1R0F A;  2QL0 A;  4YWL A;  4AHW A;  5AI2 A;  3PKJ A;  1ZRP A;  2M6P A;  1C09 A;  3WWL A;  4AI2 A;  3B0A B;  3SS2 A;  1VZG A;  2XJS A;  1S2Z A;  1R0G A;  1CAA A;  4POF A;  2V3B B;  4YWM A;  4LHL A;  3MSU A;  3KYW A;  1SMU A;  1BFY A;  2PSM C;  2JI2 A;  4JAG A;  3VPB E;  1LTL A;  3RZT A;  3QQC E;  1RYQ A;  2A6E D;  2M4V A;  2XJP A;  2PPT A;  1VZI A;  1DVB A;  5EIO C;  5MGN A;  4AR3 A;  2KN9 A;  2K2D A;  1B13 A;  1RB9 A;  1H7V A;  5DM6 1;  2C6A A;  3P8B A;  2JI3 A;  2M6O A;  1VZH A;  3KYY A;  2CKC A;  6RXN A;  2CKA A;  1CAD A;  2B5I D;  2MS3 A;  4E6Y A;  7RXN A;  1BQ9 A;  1IRN A;  2J9U B;  2ZIX A;  2BE5 D;  1YK4 A;  3P2A A;  1R0H A;  4JAF A;  1IU5 A;  2A68 D;  2ERS A;  4XXB B;  3J7Z 1;  1S24 A;  3MPS A;  3NFP I;  4AHY A;  3A44 A;  3PIO 1;  1SMW A;  5MF6 A;  4POG A;  1E8J A;  5GAD c;  1BRF A;  4AI3 A;  5JVH 1;  1QCV A;  1R0J A;  1OWC A;  2PVE A;  3PWF A;  1OWB A;  3WWN B;  2PYA A;  4JAE A;  4ME3 A;  4AHZ A;  2C6B A;  2VL6 A;  1LKO A;  3LPE B;  2V0E A;  1JYB A;  5H1S c;  5AI3 A;  2XJQ A;  4B8C D;  5MFP A;  4G6B A;  3ZG6 A;  4ZN1 B;  1BE7 A;  2DSX A;  5JVG 1;  1RDV A;  4V19 6;  2O5J D;  2Z3Q B;  3RZ6 A;  1SMM A;  3B08 B;  4LHN A;  5IY0 A;  1RYT A;  2CR8 A;  1NNQ A;  1YV1 A;  2AYJ A;  8RXN A;  1S30 A;  2L0Z A;  3J7Y 1;  4TVM A;  2XJU A;  2XJR A;  4K9F A;  4U67 1;  1R0I A;  1YK5 A;  2GMG A;  1B2J A;  3PZA A;  3KYU A;  1YUX A;  4WFN 1;  4AI1 A;  5GAE c;  4GS7 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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