1FHMA

X-ray crystal structure of reduced rubredoxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Leucine 41 is a gate for water entry in the reduction of Clostridium pasteurianum rubredoxin.
pubmed rcsb
molecule tags Electron transport
source organism Clostridium pasteurianum
molecule keywords RUBREDOXIN
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2000-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1fhmA00
1YUZA 1FHHA 4AR3A 3PZAA 1B2JA 3MPSA 1R0HA 2VL6A 6RXNA 5IY0A 1RDGA 1NNQA 2PYAA 1S2ZA 1LKMA 1DX8A 3SS2A 3KYYA 1BRFA 1IU5A 1VCXA 1CAAA 8RXNA 1YK5A 3A44A 1BQ9A 1S30A 5RXNA 1CADA 3KYWA 2KN9A 1RB9A 2HR5A 1E8JA 2LCQA 2GMGA 1LTLA 1BE7A 1SMUA 3KYVA 1LKOA 1T9PA 4YWMA 1B2OA 1IRNA 4YWLA 1T9OA 1IROA 2RDVA 3KYXA 1JYBA 1R0FA 1BFYA 2KKDA 1B13A 2DSXA 1T9QA 3RYGA 2M4YA 4POFA 1R0IA 2PVEA 4K9FA 3RZTA 4AR4A 1BQ8A 1SMWA 1R0GA 4AR5A 1ZRPA 1LKPA 1SMMA 2V3BB 1S24A 4AR6A 1QYBA 5AI2A 4RXNA 1R0JA 2QL0A 4ME3A 3KYUA 1RYTA 1FHMA 1YK4A 1RDVA 3PWFA 7RXNA 4POGA 1C09A 3RZ6A 2MS3A 5AI3A 1H7VA 1IU6A 1QCVA 1YUXA 4TPUA 1RWDA 1B71A 1YV1A 2K2DA 2PVXA 1DVBA 3QVDA
chains in the Genus database with same CATH superfamily
1VZGA 1FHHA 2B5ID 2NVTL 5GAGc 2Z3RB 3K7AL 4AI3A 4V196 2XJPA 2AQCA 3MPSA 5M3FL 2O5JD 2VL6A 5M5WL 2JA6L 4BBSL 4A3EL 4U671 4AHWA 2PYAA 1S2ZA 4AHYA 1LKMA 1IU5A 1WCML 3S2HL 1OWBA 4C3HL 1WJVA 3KYWA 4B8CD 1I6HL 5AN9H 3VPBE 3S1RL 1LTLA 2CKAA 4AYBP 3RZDL 1T9PA 4A93L 4YWMA 3GTGL 2A6ED 1I3QL 3H99A 3WWNB 3GTKL 5M5YL 2KKDA 4AI2A 4POFA 2XJRA 4AI0A 5MFPA 4AHZA 1PZXA 2CKCA 1R0GA 2NVXL 1VZHA 4LHNA 1SMMA 2XJVA 5EINC 3LWQB 1S24A 2VUML 2XJSA 2E2HL 5EIOC 4TVMA 3S1ML 4RXNA 1R0JA 2QL0A 1TWHL 4A3KL 2A6HD 5FJ8L 1RYTA 1YK4A 3J7Z1 4X6AL 4POGA 3LPEB 1F4LA 1I50L 2MS3A 5AI3A 2PSMC 3M4OL 4A3ML 3WWLA 2V0EA 3I4ML 1YV1A 2K2DA 5MF6A 2PVXA 3QVDA 4AR3A 1B2JA 4ZN1B 1PFYA 5M3ML 1R0HA 5C4XL 3PKIA 4A3BL 3PO2L 5IY0A 1RDGA 5GAEc 1DX8A 3SS2A 3H3VM 2M6OA 2JA8L 3KYYA 3HOVL 1BRFA 4JAGA 1YK5A 3A44A 1Z92B 1CADA 3GTPL 1RYQA 2XJUA 2HR5A 5DM71 2J9UB 2ERJA 4ZN3B 2GMGA 3PO3L 5GADc 1Y1WL 4C3JL 1BE7A 3K35A 4BY1L 5IYBL 2E2JL 2RDVA 3HJYB 3PKJA 4A3DL 1T9QA 3RYGA 1R9TL 4JADA 4K9FA 2XJTA 4UY81 3GTJL 2Z3QB 2WAQP 3PL5A 3HOXL 1ZRPA 1LKPA 2E2IL 1QYBA 2M4VA 5K2ME 5JVG1 3HJWB 3P2AA 5MLC3 5AI2A 3CQZL 4ME3A 2H12A 2C6AA 1FHMA 4BY7L 1RDVA 5DM61 3H9BA 7RXNA 4WFN1 5H1Sc 1YUXA 1B71A 2NVYL 1IW7D 2AUSB 3S1QL 2CR8A 2PPTA 4A3GL 2C6BA 1NXGA 1TWFL 4QIWP 2EY4E 5IP9L 4JAEA 4C3IL 2V0FA 2L0ZA 2YU9L 1CAAA 2BE5D 8RXNA 5IP7L 3MQKB 5RXNA 3S17L 2JI2A 2ZIXA 4XXBB 1E8JA 3J7Y1 2Y0SP 3S14L 2XJQA 3RZOL 1K83L 1SMUA 3I4NL 1LKOA 3LWPB 1B2OA 4YWLA 1IROA 3KYXA 1R0FA 1BFYA 1B13A 3FDJA 2DSXA 1PFVA 5C3EL 4BBRL 2PVEA 4Y52L 1BQ8A 1SMWA 4E6YA 3H9CA 3GTQL 3IU3I 3S16L 2NYDA 3ZG6A 3HKZP 3FKIL 1VZIA 3KYUA 4A3JL 3H97A 3PWFA 1C09A 4AHXA 3RZ6A 3B08B 4AI1A 2ERSA 4C2M1 4TPUA 3H0GL 5M5XL 1ODHA 5GAHc 2A69D 1DVBA 1OWCA 1YUZA 2JA5L 2B63L 3PZAA 3PIP1 2RFKB 3B0AB 2JI3A 3JR7A 1TWGL 4Y7NL 6RXNA 2R92L 3HOWL 3QQCE 1NNQA 2JA7L 3GTML 3LWRB 1NXEA 3M3YL 5FLML 1VCXA 1BQ9A 1S30A 2NVQL 2AYJA 2KN9A 1PFWA 1RB9A 3S1NL 2A68D 2LCQA 3NFPI 3S15L 5MGNA 3KYVA 4A3FL 1PFUA 4GS7D 3PIO1 4A3IL 4A3LL 3S2DL 1IRNA 3HOYL 1T9OA 1JYBA 2HVYC 2WB1P 4LHLA 2M4YA 1R0IA 3LWOB 1QQTA 4JAFA 3RZTA 4AR4A 2R93L 2JI1A 2PMZP 4AR5A 1P7PA 4XGHA 3GTLL 2V3BB 4AR6A 5JVH1 3GTOL 2M6PA 3HAXC 1TWAL 3MSUA 1H7VA 1IU6A 1QCVA 4A3CL 1RWDA 4BXXL 3LNLA 5C4JL 1TWCL 1SFOL 3LWVB 5IYCL 5IYDL 3P8BA 5C44L 2APOB 1Y1VL 3HOZL 2R7ZL 4G6BA 5MFZA 3HOUL
chains in the Genus database with same CATH topology
1OWCA 1VZGA 1YUZA 1FHHA 2B5ID 4AR3A 5GAGc 2Z3RB 3PZAA 3PIP1 2C6BA 1B2JA 1NXGA 3B0AB 4AI3A 4V196 2XJPA 2JI3A 4ZN1B 3MPSA 1R0HA 3PKIA 2O5JD 2VL6A 6RXNA 5IY0A 1RDGA 4JAEA 3QQCE 1NNQA 4AHWA 2PYAA 5GAEc 4U671 1S2ZA 4AHYA 2V0FA 1LKMA 1DX8A 1NXEA 3SS2A 2M6OA 3KYYA 1BRFA 2L0ZA 1IU5A 1VCXA 1CAAA 4JAGA 2BE5D 8RXNA 1YK5A 1OWBA 1Z92B 1BQ9A 1S30A 3A44A 5RXNA 1CADA 1WJVA 2AYJA 1RYQA 2JI2A 2ZIXA 3KYWA 2KN9A 1RB9A 4B8CD 2A68D 2HR5A 2XJUA 4XXBB 5DM71 1E8JA 2J9UB 5AN9H 2LCQA 3J7Y1 2ERJA 3VPBE 4ZN3B 2GMGA 3NFPI 5GADc 1LTLA 2CKAA 2XJQA 1BE7A 3K35A 1SMUA 3KYVA 1LKOA 5MGNA 1T9PA 4GS7D 4YWMA 3PIO1 1B2OA 2A6ED 1IRNA 4YWLA 3WWNB 1T9OA 1IROA 2RDVA 3KYXA 1JYBA 1R0FA 1BFYA 2KKDA 1B13A 3PKJA 2DSXA 1T9QA 4LHLA 3RYGA 2M4YA 4AI2A 4POFA 1R0IA 2PVEA 4JADA 2XJRA 4K9FA 2XJTA 4JAFA 3RZTA 4AI0A 4AR4A 4UY81 2JI1A 2Z3QB 4AHZA 2CKCA 1BQ8A 1SMWA 1R0GA 5MFPA 4E6YA 4AR5A 1ZRPA 4XGHA 1LKPA 1VZHA 3IU3I 1SMMA 2V3BB 2XJVA 4LHNA 1S24A 4AR6A 1QYBA 2M4VA 5EINC 5K2ME 2NYDA 5JVG1 2XJSA 5EIOC 3P2AA 4TVMA 3ZG6A 5JVH1 5MLC3 5AI2A 4RXNA 1R0JA 2QL0A 1VZIA 4ME3A 2A6HD 2M6PA 2H12A 3KYUA 1RYTA 2C6AA 1FHMA 1YK4A 1RDVA 5DM61 3PWFA 3J7Z1 7RXNA 4POGA 4WFN1 3LPEB 1C09A 3MSUA 4AHXA 3RZ6A 2MS3A 5AI3A 1H7VA 2PSMC 3B08B 4AI1A 2ERSA 3WWLA 1IU6A 1QCVA 5H1Sc 1YUXA 4TPUA 1RWDA 3LNLA 2V0EA 1B71A 1IW7D 1YV1A 1ODHA 3P8BA 2K2DA 5GAHc 2A69D 2PVXA 2CR8A 5MF6A 1DVBA 2PPTA 4G6BA 3QVDA 5MFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YUZ A;  1FHH A;  4AR3 A;  3PZA A;  1B2J A;  3MPS A;  1R0H A;  2VL6 A;  6RXN A;  5IY0 A;  1RDG A;  1NNQ A;  2PYA A;  1S2Z A;  1LKM A;  1DX8 A;  3SS2 A;  3KYY A;  1BRF A;  1IU5 A;  1VCX A;  1CAA A;  8RXN A;  1YK5 A;  3A44 A;  1BQ9 A;  1S30 A;  5RXN A;  1CAD A;  3KYW A;  2KN9 A;  1RB9 A;  2HR5 A;  1E8J A;  2LCQ A;  2GMG A;  1LTL A;  1BE7 A;  1SMU A;  3KYV A;  1LKO A;  1T9P A;  4YWM A;  1B2O A;  1IRN A;  4YWL A;  1T9O A;  1IRO A;  2RDV A;  3KYX A;  1JYB A;  1R0F A;  1BFY A;  2KKD A;  1B13 A;  2DSX A;  1T9Q A;  3RYG A;  2M4Y A;  4POF A;  1R0I A;  2PVE A;  4K9F A;  3RZT A;  4AR4 A;  1BQ8 A;  1SMW A;  1R0G A;  4AR5 A;  1ZRP A;  1LKP A;  1SMM A;  2V3B B;  1S24 A;  4AR6 A;  1QYB A;  5AI2 A;  4RXN A;  1R0J A;  2QL0 A;  4ME3 A;  3KYU A;  1RYT A;  1FHM A;  1YK4 A;  1RDV A;  3PWF A;  7RXN A;  4POG A;  1C09 A;  3RZ6 A;  2MS3 A;  5AI3 A;  1H7V A;  1IU6 A;  1QCV A;  1YUX A;  4TPU A;  1RWD A;  1B71 A;  1YV1 A;  2K2D A;  2PVX A;  1DVB A;  3QVD A; 
#chains in the Genus database with same CATH topology
 1VZG A;  1FHH A;  2B5I D;  2NVT L;  5GAG c;  2Z3R B;  3K7A L;  4AI3 A;  4V19 6;  2XJP A;  2AQC A;  3MPS A;  5M3F L;  2O5J D;  2VL6 A;  5M5W L;  2JA6 L;  4BBS L;  4A3E L;  4U67 1;  4AHW A;  2PYA A;  1S2Z A;  4AHY A;  1LKM A;  1IU5 A;  1WCM L;  3S2H L;  1OWB A;  4C3H L;  1WJV A;  3KYW A;  4B8C D;  1I6H L;  5AN9 H;  3VPB E;  3S1R L;  1LTL A;  2CKA A;  4AYB P;  3RZD L;  1T9P A;  4A93 L;  4YWM A;  3GTG L;  2A6E D;  1I3Q L;  3H99 A;  3WWN B;  3GTK L;  5M5Y L;  2KKD A;  4AI2 A;  4POF A;  2XJR A;  4AI0 A;  5MFP A;  4AHZ A;  1PZX A;  2CKC A;  1R0G A;  2NVX L;  1VZH A;  4LHN A;  1SMM A;  2XJV A;  5EIN C;  3LWQ B;  1S24 A;  2VUM L;  2XJS A;  2E2H L;  5EIO C;  4TVM A;  3S1M L;  4RXN A;  1R0J A;  2QL0 A;  1TWH L;  4A3K L;  2A6H D;  5FJ8 L;  1RYT A;  1YK4 A;  3J7Z 1;  4X6A L;  4POG A;  3LPE B;  1F4L A;  1I50 L;  2MS3 A;  5AI3 A;  2PSM C;  3M4O L;  4A3M L;  3WWL A;  2V0E A;  3I4M L;  1YV1 A;  2K2D A;  5MF6 A;  2PVX A;  3QVD A;  4AR3 A;  1B2J A;  4ZN1 B;  1PFY A;  5M3M L;  1R0H A;  5C4X L;  3PKI A;  4A3B L;  3PO2 L;  5IY0 A;  1RDG A;  5GAE c;  1DX8 A;  3SS2 A;  3H3V M;  2M6O A;  2JA8 L;  3KYY A;  3HOV L;  1BRF A;  4JAG A;  1YK5 A;  3A44 A;  1Z92 B;  1CAD A;  3GTP L;  1RYQ A;  2XJU A;  2HR5 A;  5DM7 1;  2J9U B;  2ERJ A;  4ZN3 B;  2GMG A;  3PO3 L;  5GAD c;  1Y1W L;  4C3J L;  1BE7 A;  3K35 A;  4BY1 L;  5IYB L;  2E2J L;  2RDV A;  3HJY B;  3PKJ A;  4A3D L;  1T9Q A;  3RYG A;  1R9T L;  4JAD A;  4K9F A;  2XJT A;  4UY8 1;  3GTJ L;  2Z3Q B;  2WAQ P;  3PL5 A;  3HOX L;  1ZRP A;  1LKP A;  2E2I L;  1QYB A;  2M4V A;  5K2M E;  5JVG 1;  3HJW B;  3P2A A;  5MLC 3;  5AI2 A;  3CQZ L;  4ME3 A;  2H12 A;  2C6A A;  1FHM A;  4BY7 L;  1RDV A;  5DM6 1;  3H9B A;  7RXN A;  4WFN 1;  5H1S c;  1YUX A;  1B71 A;  2NVY L;  1IW7 D;  2AUS B;  3S1Q L;  2CR8 A;  2PPT A;  4A3G L;  2C6B A;  1NXG A;  1TWF L;  4QIW P;  2EY4 E;  5IP9 L;  4JAE A;  4C3I L;  2V0F A;  2L0Z A;  2YU9 L;  1CAA A;  2BE5 D;  8RXN A;  5IP7 L;  3MQK B;  5RXN A;  3S17 L;  2JI2 A;  2ZIX A;  4XXB B;  1E8J A;  3J7Y 1;  2Y0S P;  3S14 L;  2XJQ A;  3RZO L;  1K83 L;  1SMU A;  3I4N L;  1LKO A;  3LWP B;  1B2O A;  4YWL A;  1IRO A;  3KYX A;  1R0F A;  1BFY A;  1B13 A;  3FDJ A;  2DSX A;  1PFV A;  5C3E L;  4BBR L;  2PVE A;  4Y52 L;  1BQ8 A;  1SMW A;  4E6Y A;  3H9C A;  3GTQ L;  3IU3 I;  3S16 L;  2NYD A;  3ZG6 A;  3HKZ P;  3FKI L;  1VZI A;  3KYU A;  4A3J L;  3H97 A;  3PWF A;  1C09 A;  4AHX A;  3RZ6 A;  3B08 B;  4AI1 A;  2ERS A;  4C2M 1;  4TPU A;  3H0G L;  5M5X L;  1ODH A;  5GAH c;  2A69 D;  1DVB A;  1OWC A;  1YUZ A;  2JA5 L;  2B63 L;  3PZA A;  3PIP 1;  2RFK B;  3B0A B;  2JI3 A;  3JR7 A;  1TWG L;  4Y7N L;  6RXN A;  2R92 L;  3HOW L;  3QQC E;  1NNQ A;  2JA7 L;  3GTM L;  3LWR B;  1NXE A;  3M3Y L;  5FLM L;  1VCX A;  1BQ9 A;  1S30 A;  2NVQ L;  2AYJ A;  2KN9 A;  1PFW A;  1RB9 A;  3S1N L;  2A68 D;  2LCQ A;  3NFP I;  3S15 L;  5MGN A;  3KYV A;  4A3F L;  1PFU A;  4GS7 D;  3PIO 1;  4A3I L;  4A3L L;  3S2D L;  1IRN A;  3HOY L;  1T9O A;  1JYB A;  2HVY C;  2WB1 P;  4LHL A;  2M4Y A;  1R0I A;  3LWO B;  1QQT A;  4JAF A;  3RZT A;  4AR4 A;  2R93 L;  2JI1 A;  2PMZ P;  4AR5 A;  1P7P A;  4XGH A;  3GTL L;  2V3B B;  4AR6 A;  5JVH 1;  3GTO L;  2M6P A;  3HAX C;  1TWA L;  3MSU A;  1H7V A;  1IU6 A;  1QCV A;  4A3C L;  1RWD A;  4BXX L;  3LNL A;  5C4J L;  1TWC L;  1SFO L;  3LWV B;  5IYC L;  5IYD L;  3P8B A;  5C44 L;  2APO B;  1Y1V L;  3HOZ L;  2R7Z L;  4G6B A;  5MFZ A;  3HOU L; 
#chains in the Genus database with same CATH homology
 1OWC A;  1VZG A;  1YUZ A;  1FHH A;  2B5I D;  4AR3 A;  5GAG c;  2Z3R B;  3PZA A;  3PIP 1;  2C6B A;  1B2J A;  1NXG A;  3B0A B;  4AI3 A;  4V19 6;  2XJP A;  2JI3 A;  4ZN1 B;  3MPS A;  1R0H A;  3PKI A;  2O5J D;  2VL6 A;  6RXN A;  5IY0 A;  1RDG A;  4JAE A;  3QQC E;  1NNQ A;  4AHW A;  2PYA A;  5GAE c;  4U67 1;  1S2Z A;  4AHY A;  2V0F A;  1LKM A;  1DX8 A;  1NXE A;  3SS2 A;  2M6O A;  3KYY A;  1BRF A;  2L0Z A;  1IU5 A;  1VCX A;  1CAA A;  4JAG A;  2BE5 D;  8RXN A;  1YK5 A;  1OWB A;  1Z92 B;  1BQ9 A;  1S30 A;  3A44 A;  5RXN A;  1CAD A;  1WJV A;  2AYJ A;  1RYQ A;  2JI2 A;  2ZIX A;  3KYW A;  2KN9 A;  1RB9 A;  4B8C D;  2A68 D;  2HR5 A;  2XJU A;  4XXB B;  5DM7 1;  1E8J A;  2J9U B;  5AN9 H;  2LCQ A;  3J7Y 1;  2ERJ A;  3VPB E;  4ZN3 B;  2GMG A;  3NFP I;  5GAD c;  1LTL A;  2CKA A;  2XJQ A;  1BE7 A;  3K35 A;  1SMU A;  3KYV A;  1LKO A;  5MGN A;  1T9P A;  4GS7 D;  4YWM A;  3PIO 1;  1B2O A;  2A6E D;  1IRN A;  4YWL A;  3WWN B;  1T9O A;  1IRO A;  2RDV A;  3KYX A;  1JYB A;  1R0F A;  1BFY A;  2KKD A;  1B13 A;  3PKJ A;  2DSX A;  1T9Q A;  4LHL A;  3RYG A;  2M4Y A;  4AI2 A;  4POF A;  1R0I A;  2PVE A;  4JAD A;  2XJR A;  4K9F A;  2XJT A;  4JAF A;  3RZT A;  4AI0 A;  4AR4 A;  4UY8 1;  2JI1 A;  2Z3Q B;  4AHZ A;  2CKC A;  1BQ8 A;  1SMW A;  1R0G A;  5MFP A;  4E6Y A;  4AR5 A;  1ZRP A;  4XGH A;  1LKP A;  1VZH A;  3IU3 I;  1SMM A;  2V3B B;  2XJV A;  4LHN A;  1S24 A;  4AR6 A;  1QYB A;  2M4V A;  5EIN C;  5K2M E;  2NYD A;  5JVG 1;  2XJS A;  5EIO C;  3P2A A;  4TVM A;  3ZG6 A;  5JVH 1;  5MLC 3;  5AI2 A;  4RXN A;  1R0J A;  2QL0 A;  1VZI A;  4ME3 A;  2A6H D;  2M6P A;  2H12 A;  3KYU A;  1RYT A;  2C6A A;  1FHM A;  1YK4 A;  1RDV A;  5DM6 1;  3PWF A;  3J7Z 1;  7RXN A;  4POG A;  4WFN 1;  3LPE B;  1C09 A;  3MSU A;  4AHX A;  3RZ6 A;  2MS3 A;  5AI3 A;  1H7V A;  2PSM C;  3B08 B;  4AI1 A;  2ERS A;  3WWL A;  1IU6 A;  1QCV A;  5H1S c;  1YUX A;  4TPU A;  1RWD A;  3LNL A;  2V0E A;  1B71 A;  1IW7 D;  1YV1 A;  1ODH A;  3P8B A;  2K2D A;  5GAH c;  2A69 D;  2PVX A;  2CR8 A;  5MF6 A;  1DVB A;  2PPT A;  4G6B A;  3QVD A;  5MFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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