2JA6L

Cpd lesion containing rna polymerase ii elongation complex b
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (31-34)Updating...
connected with : NaN
molecule tags Transferase
publication title CPD damage recognition by transcribing RNA polymerase II.
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2ja6L00
1TWFL 5M3FL 1WCML 3GTML 2WB1P 1TWCL 3S1RL 2JA5L 5IP7L 1I6HL 4A3JL 2E2HL 5IYDL 1SFOL 2VUML 3S17L 2R92L 2JA6L 3S1NL 5M3ML 2R93L 3S16L 3S2DL 4A3EL 3M4OL 3FKIL 4Y52L 4A93L 4A3IL 1TWAL 5FLML 1I50L 3I4ML 5IYBL 4C3IL 5C4JL 4BXXL 3RZOL 2E2JL 5M5YL 4C2M1 4A3GL 3S1QL 2JA8L 4QIWP 3GTQL 1TWHL 2WAQP 2R7ZL 3PO2L 2NVXL 3H3VM 3HOZL 3S15L 1I3QL 3K7AL 1TWGL 4BBRL 2E2IL 2Y0SP 1Y1WL 1R9TL 3HOXL 3HOVL 4AYBP 3M3YL 3GTGL 2NVTL 3PO3L 1K83L 4A3FL 4BBSL 4A3KL 4A3DL 1Y1VL 4C3HL 3RZDL 3H0GL 3GTLL 5M5WL 2B63L 2YU9L 5IYCL 4Y7NL 4BY7L 2PMZP 5C4XL 4A3CL 3GTOL 2JA7L 2NVYL 3CQZL 4BY1L 3HOYL 3S1ML 2NVQL 3S2HL 4A3BL 5M5XL 3GTKL 5IP9L 3GTPL 3HOWL 3S14L 5C3EL 5FJ8L 4X6AL 4C3JL 3I4NL 3HKZP 3HOUL 5C44L 4A3LL 3GTJL 4A3ML
chains in the Genus database with same CATH superfamily
2BE5D 4LHNA 5K2ME 3WWNB 3S1RL 2APOB 1I6HL 4A3JL 2KN9A 2JI3A 5IYDL 2VUML 2J9UB 1VZHA 1B13A 3HJWB 5AI2A 1NXEA 2C6BA 2JA6L 3H9CA 5RXNA 1BRFA 3NFPI 1RYQA 1R0FA 2A68D 1VZGA 3RZ6A 2XJSA 2XJQA 3FKIL 3LWOB 5DM71 2ERSA 1S30A 4POGA 1SMMA 2JI2A 4YWMA 5H1Sc 5MLC3 4A3GL 1PZXA 2A69D 3LWPB 4V196 1RDVA 2HR5A 3JR7A 3PO2L 1IROA 5GADc 1BQ9A 2E2IL 2Y0SP 1R9TL 1K83L 4BBSL 1E8JA 4A3DL 1H7VA 1WJVA 2KKDA 1LKMA 1PFUA 5M5WL 3ZG6A 2PSMC 2PPTA 1BQ8A 2AYJA 7RXNA 3CQZL 1QCVA 1IW7D 3HOYL 3S1ML 2XJTA 2A6ED 3QVDA 3PIO1 4A3BL 5MGNA 3GTKL 4XXBB 4AR6A 4TVMA 3LPEB 1CAAA 1P7PA 4AI2A 4C3JL 3I4NL 2CKCA 5C44L 3H99A 4A3LL 1Z92B 1RB9A 2XJVA 5M3FL 1WCML 4GS7D 3GTML 3LNLA 3P8BA 2WB1P 1TWCL 2NYDA 1PFVA 2XJUA 1VCXA 1R0GA 1SFOL 1BE7A 1PFYA 1S2ZA 2AUSB 3J7Y1 3PWFA 4LHLA 3H97A 4A93L 4Y52L 1TWAL 1FHMA 1I50L 8RXNA 4JADA 2A6HD 4C3IL 2L0ZA 4TPUA 1LTLA 3S1QL 2R7ZL 1SMUA 1TWGL 4AHXA 2V0FA 1S24A 4BBRL 2PVEA 1R0IA 2NVTL 4E6YA 1LKOA 3HJYB 3GTLL 2YU9L 5IYCL 4YWLA 1DVBA 4BY7L 2PMZP 5C4XL 4A3CL 1IU5A 4BY1L 5JVH1 4AI0A 3IU3I 4AI3A 4WFN1 1PFWA 5M5XL 2M6PA 3PIP1 4AR5A 4X6AL 2GMGA 4JAGA 3HOUL 4XGHA 2LCQA 1R0JA 4POFA 3K35A 4ZN1B 3MSUA 4U671 2XJRA 3PKIA 4JAFA 2JA5L 2B5ID 1OWBA 5IP7L 3FDJA 2JI1A 3KYXA 5AN9H 3S17L 2O5JD 1T9QA 2Z3QB 1QYBA 4AR4A 3PL5A 5M3ML 2R93L 1B2JA 3S16L 3S2DL 1DX8A 2H12A 4A3EL 3M4OL 1FHHA 4RXNA 1YUXA 4AR3A 3KYWA 5C4JL 4BXXL 1RYTA 1B2OA 3RZOL 1LKPA 4B8CD 5DM61 2JA8L 4QIWP 5EINC 2XJPA 3H9BA 1RWDA 2VL6A 1OWCA 3QQCE 3PZAA 4AHYA 3HOVL 2M4YA 3HOXL 4AI1A 3HAXC 3PO3L 4A3FL 4C3HL 4ZN3B 3RYGA 2ERJA 2ZIXA 5EIOC 3GTOL 3LWVB 2CKAA 5GAEc 2JA7L 1T9OA 3MQKB 1YK4A 2NVQL 5AI3A 5MFPA 1CADA 5IP9L 3GTPL 2DSXA 3S14L 2CR8A 1R0HA 2M6OA 1C09A 5GAHc 3GTJL 4A3ML 5IY0A 1RDGA 1TWFL 1ZRPA 1IRNA 1YV1A 1NXGA 3J7Z1 1SMWA 3LWRB 3VPBE 2E2HL 4ME3A 5MF6A 2R92L 2RDVA 1JYBA 3MPSA 3S1NL 2V3BB 2RFKB 3B0AB 4A3IL 5JVG1 2Z3RB 5FLML 3I4ML 5IYBL 5MFZA 1YK5A 4JAEA 2QL0A 2E2JL 4G6BA 5M5YL 4C2M1 3LWQB 1VZIA 6RXNA 2V0EA 3GTQL 1TWHL 2WAQP 4AHZA 2NVXL 3H3VM 2MS3A 3HOZL 1I3QL 3K7AL 3S15L 3SS2A 1Y1WL 2EY4E 4AYBP 1F4LA 3GTGL 3M3YL 3P2AA 4A3KL 1Y1VL 2PVXA 3RZDL 3H0GL 1T9PA 3KYVA 2B63L 4Y7NL 1BFYA 3RZTA 3A44A 2K2DA 2C6AA 2PYAA 1YUZA 2NVYL 3B08B 3S2HL 3WWLA 1ODHA 5GAGc 3HOWL 2M4VA 5C3EL 3KYUA 5FJ8L 4UY81 3KYYA 4AHWA 2HVYC 1NNQA 4K9FA 3HKZP 3PKJA 1IU6A 1QQTA 2AQCA 1B71A
chains in the Genus database with same CATH topology
1TWFL 5M3FL 1WCML 3GTML 2WB1P 1TWCL 3S1RL 2JA5L 5IP7L 1I6HL 4A3JL 2E2HL 5IYDL 1SFOL 2VUML 3S17L 2R92L 2JA6L 3S1NL 5M3ML 2R93L 3S16L 3S2DL 4A3EL 3M4OL 3FKIL 4Y52L 4A93L 4A3IL 1TWAL 5FLML 1I50L 3I4ML 5IYBL 4C3IL 5C4JL 4BXXL 3RZOL 2E2JL 5M5YL 4C2M1 4A3GL 3S1QL 2JA8L 4QIWP 3GTQL 1TWHL 2WAQP 2R7ZL 3PO2L 2NVXL 3H3VM 3HOZL 3S15L 1I3QL 3K7AL 1TWGL 4BBRL 2E2IL 2Y0SP 1Y1WL 1R9TL 3HOXL 3HOVL 4AYBP 3M3YL 3GTGL 2NVTL 3PO3L 1K83L 4A3FL 4BBSL 4A3KL 4A3DL 1Y1VL 4C3HL 3RZDL 3H0GL 3GTLL 5M5WL 2B63L 2YU9L 5IYCL 4Y7NL 4BY7L 2PMZP 5C4XL 4A3CL 3GTOL 2JA7L 2NVYL 3CQZL 4BY1L 3HOYL 3S1ML 2NVQL 3S2HL 4A3BL 5M5XL 3GTKL 5IP9L 3GTPL 3HOWL 3S14L 5C3EL 5FJ8L 4X6AL 4C3JL 3I4NL 3HKZP 3HOUL 5C44L 4A3LL 3GTJL 4A3ML
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TWF L;  5M3F L;  1WCM L;  3GTM L;  2WB1 P;  1TWC L;  3S1R L;  2JA5 L;  5IP7 L;  1I6H L;  4A3J L;  2E2H L;  5IYD L;  1SFO L;  2VUM L;  3S17 L;  2R92 L;  2JA6 L;  3S1N L;  5M3M L;  2R93 L;  3S16 L;  3S2D L;  4A3E L;  3M4O L;  3FKI L;  4Y52 L;  4A93 L;  4A3I L;  1TWA L;  5FLM L;  1I50 L;  3I4M L;  5IYB L;  4C3I L;  5C4J L;  4BXX L;  3RZO L;  2E2J L;  5M5Y L;  4C2M 1;  4A3G L;  3S1Q L;  2JA8 L;  4QIW P;  3GTQ L;  1TWH L;  2WAQ P;  2R7Z L;  3PO2 L;  2NVX L;  3H3V M;  3HOZ L;  3S15 L;  1I3Q L;  3K7A L;  1TWG L;  4BBR L;  2E2I L;  2Y0S P;  1Y1W L;  1R9T L;  3HOX L;  3HOV L;  4AYB P;  3M3Y L;  3GTG L;  2NVT L;  3PO3 L;  1K83 L;  4A3F L;  4BBS L;  4A3K L;  4A3D L;  1Y1V L;  4C3H L;  3RZD L;  3H0G L;  3GTL L;  5M5W L;  2B63 L;  2YU9 L;  5IYC L;  4Y7N L;  4BY7 L;  2PMZ P;  5C4X L;  4A3C L;  3GTO L;  2JA7 L;  2NVY L;  3CQZ L;  4BY1 L;  3HOY L;  3S1M L;  2NVQ L;  3S2H L;  4A3B L;  5M5X L;  3GTK L;  5IP9 L;  3GTP L;  3HOW L;  3S14 L;  5C3E L;  5FJ8 L;  4X6A L;  4C3J L;  3I4N L;  3HKZ P;  3HOU L;  5C44 L;  4A3L L;  3GTJ L;  4A3M L; 
#chains in the Genus database with same CATH topology
 2BE5 D;  4LHN A;  5K2M E;  3WWN B;  3S1R L;  2APO B;  1I6H L;  4A3J L;  2KN9 A;  2JI3 A;  5IYD L;  2VUM L;  2J9U B;  1VZH A;  1B13 A;  3HJW B;  5AI2 A;  1NXE A;  2C6B A;  2JA6 L;  3H9C A;  5RXN A;  1BRF A;  3NFP I;  1RYQ A;  1R0F A;  2A68 D;  1VZG A;  3RZ6 A;  2XJS A;  2XJQ A;  3FKI L;  3LWO B;  5DM7 1;  2ERS A;  1S30 A;  4POG A;  1SMM A;  2JI2 A;  4YWM A;  5H1S c;  5MLC 3;  4A3G L;  1PZX A;  2A69 D;  3LWP B;  4V19 6;  1RDV A;  2HR5 A;  3JR7 A;  3PO2 L;  1IRO A;  5GAD c;  1BQ9 A;  2E2I L;  2Y0S P;  1R9T L;  1K83 L;  4BBS L;  1E8J A;  4A3D L;  1H7V A;  1WJV A;  2KKD A;  1LKM A;  1PFU A;  5M5W L;  3ZG6 A;  2PSM C;  2PPT A;  1BQ8 A;  2AYJ A;  7RXN A;  3CQZ L;  1QCV A;  1IW7 D;  3HOY L;  3S1M L;  2XJT A;  2A6E D;  3QVD A;  3PIO 1;  4A3B L;  5MGN A;  3GTK L;  4XXB B;  4AR6 A;  4TVM A;  3LPE B;  1CAA A;  1P7P A;  4AI2 A;  4C3J L;  3I4N L;  2CKC A;  5C44 L;  3H99 A;  4A3L L;  1Z92 B;  1RB9 A;  2XJV A;  5M3F L;  1WCM L;  4GS7 D;  3GTM L;  3LNL A;  3P8B A;  2WB1 P;  1TWC L;  2NYD A;  1PFV A;  2XJU A;  1VCX A;  1R0G A;  1SFO L;  1BE7 A;  1PFY A;  1S2Z A;  2AUS B;  3J7Y 1;  3PWF A;  4LHL A;  3H97 A;  4A93 L;  4Y52 L;  1TWA L;  1FHM A;  1I50 L;  8RXN A;  4JAD A;  2A6H D;  4C3I L;  2L0Z A;  4TPU A;  1LTL A;  3S1Q L;  2R7Z L;  1SMU A;  1TWG L;  4AHX A;  2V0F A;  1S24 A;  4BBR L;  2PVE A;  1R0I A;  2NVT L;  4E6Y A;  1LKO A;  3HJY B;  3GTL L;  2YU9 L;  5IYC L;  4YWL A;  1DVB A;  4BY7 L;  2PMZ P;  5C4X L;  4A3C L;  1IU5 A;  4BY1 L;  5JVH 1;  4AI0 A;  3IU3 I;  4AI3 A;  4WFN 1;  1PFW A;  5M5X L;  2M6P A;  3PIP 1;  4AR5 A;  4X6A L;  2GMG A;  4JAG A;  3HOU L;  4XGH A;  2LCQ A;  1R0J A;  4POF A;  3K35 A;  4ZN1 B;  3MSU A;  4U67 1;  2XJR A;  3PKI A;  4JAF A;  2JA5 L;  2B5I D;  1OWB A;  5IP7 L;  3FDJ A;  2JI1 A;  3KYX A;  5AN9 H;  3S17 L;  2O5J D;  1T9Q A;  2Z3Q B;  1QYB A;  4AR4 A;  3PL5 A;  5M3M L;  2R93 L;  1B2J A;  3S16 L;  3S2D L;  1DX8 A;  2H12 A;  4A3E L;  3M4O L;  1FHH A;  4RXN A;  1YUX A;  4AR3 A;  3KYW A;  5C4J L;  4BXX L;  1RYT A;  1B2O A;  3RZO L;  1LKP A;  4B8C D;  5DM6 1;  2JA8 L;  4QIW P;  5EIN C;  2XJP A;  3H9B A;  1RWD A;  2VL6 A;  1OWC A;  3QQC E;  3PZA A;  4AHY A;  3HOV L;  2M4Y A;  3HOX L;  4AI1 A;  3HAX C;  3PO3 L;  4A3F L;  4C3H L;  4ZN3 B;  3RYG A;  2ERJ A;  2ZIX A;  5EIO C;  3GTO L;  3LWV B;  2CKA A;  5GAE c;  2JA7 L;  1T9O A;  3MQK B;  1YK4 A;  2NVQ L;  5AI3 A;  5MFP A;  1CAD A;  5IP9 L;  3GTP L;  2DSX A;  3S14 L;  2CR8 A;  1R0H A;  2M6O A;  1C09 A;  5GAH c;  3GTJ L;  4A3M L;  5IY0 A;  1RDG A;  1TWF L;  1ZRP A;  1IRN A;  1YV1 A;  1NXG A;  3J7Z 1;  1SMW A;  3LWR B;  3VPB E;  2E2H L;  4ME3 A;  5MF6 A;  2R92 L;  2RDV A;  1JYB A;  3MPS A;  3S1N L;  2V3B B;  2RFK B;  3B0A B;  4A3I L;  5JVG 1;  2Z3R B;  5FLM L;  3I4M L;  5IYB L;  5MFZ A;  1YK5 A;  4JAE A;  2QL0 A;  2E2J L;  4G6B A;  5M5Y L;  4C2M 1;  3LWQ B;  1VZI A;  6RXN A;  2V0E A;  3GTQ L;  1TWH L;  2WAQ P;  4AHZ A;  2NVX L;  3H3V M;  2MS3 A;  3HOZ L;  1I3Q L;  3K7A L;  3S15 L;  3SS2 A;  1Y1W L;  2EY4 E;  4AYB P;  1F4L A;  3GTG L;  3M3Y L;  3P2A A;  4A3K L;  1Y1V L;  2PVX A;  3RZD L;  3H0G L;  1T9P A;  3KYV A;  2B63 L;  4Y7N L;  1BFY A;  3RZT A;  3A44 A;  2K2D A;  2C6A A;  2PYA A;  1YUZ A;  2NVY L;  3B08 B;  3S2H L;  3WWL A;  1ODH A;  5GAG c;  3HOW L;  2M4V A;  5C3E L;  3KYU A;  5FJ8 L;  4UY8 1;  3KYY A;  4AHW A;  2HVY C;  1NNQ A;  4K9F A;  3HKZ P;  3PKJ A;  1IU6 A;  1QQT A;  2AQC A;  1B71 A; 
#chains in the Genus database with same CATH homology
 1TWF L;  5M3F L;  1WCM L;  3GTM L;  2WB1 P;  1TWC L;  3S1R L;  2JA5 L;  5IP7 L;  1I6H L;  4A3J L;  2E2H L;  5IYD L;  1SFO L;  2VUM L;  3S17 L;  2R92 L;  2JA6 L;  3S1N L;  5M3M L;  2R93 L;  3S16 L;  3S2D L;  4A3E L;  3M4O L;  3FKI L;  4Y52 L;  4A93 L;  4A3I L;  1TWA L;  5FLM L;  1I50 L;  3I4M L;  5IYB L;  4C3I L;  5C4J L;  4BXX L;  3RZO L;  2E2J L;  5M5Y L;  4C2M 1;  4A3G L;  3S1Q L;  2JA8 L;  4QIW P;  3GTQ L;  1TWH L;  2WAQ P;  2R7Z L;  3PO2 L;  2NVX L;  3H3V M;  3HOZ L;  3S15 L;  1I3Q L;  3K7A L;  1TWG L;  4BBR L;  2E2I L;  2Y0S P;  1Y1W L;  1R9T L;  3HOX L;  3HOV L;  4AYB P;  3M3Y L;  3GTG L;  2NVT L;  3PO3 L;  1K83 L;  4A3F L;  4BBS L;  4A3K L;  4A3D L;  1Y1V L;  4C3H L;  3RZD L;  3H0G L;  3GTL L;  5M5W L;  2B63 L;  2YU9 L;  5IYC L;  4Y7N L;  4BY7 L;  2PMZ P;  5C4X L;  4A3C L;  3GTO L;  2JA7 L;  2NVY L;  3CQZ L;  4BY1 L;  3HOY L;  3S1M L;  2NVQ L;  3S2H L;  4A3B L;  5M5X L;  3GTK L;  5IP9 L;  3GTP L;  3HOW L;  3S14 L;  5C3E L;  5FJ8 L;  4X6A L;  4C3J L;  3I4N L;  3HKZ P;  3HOU L;  5C44 L;  4A3L L;  3GTJ L;  4A3M L; 
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