2PMZP

Archaeal rna polymerase from sulfolobus solfataricus
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
43
structure length
43
Chain Sequence
CGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO8 (10-45)S1 (7-9)S2 (12-16)TIV3 (20-23)O2 (39-41)TII'1 (9-12)Updating...
connected with : NaN
molecule tags Translation, transferase
publication title The X-ray crystal structure of RNA polymerase from Archaea
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit A
total genus 1
structure length 43
sequence length 43
chains with identical sequence Z
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2pmzP00
1Y1WL 5M5YL 5IP9L 4A3ML 1SFOL 1TWHL 4C3JL 5C4JL 5IYCL 1I3QL 5M5WL 3H3VM 3HOUL 3S1RL 3I4NL 4X6AL 2PMZP 5M5XL 3GTJL 1TWFL 3M4OL 1TWGL 2JA5L 3HOZL 2WB1P 3GTQL 4AYBP 4C3HL 2NVYL 2YU9L 2NVTL 2B63L 3K7AL 3PO3L 3HOXL 5IYDL 3PO2L 4QIWP 4A3FL 3RZOL 4BY7L 2NVXL 5M3ML 2JA6L 1TWAL 3GTPL 2E2JL 4A3IL 4A93L 3FKIL 3S14L 2E2IL 2JA7L 5C4XL 4A3CL 2R93L 4BXXL 3S2HL 3HOYL 3CQZL 3I4ML 3S17L 4A3GL 4A3EL 4A3LL 4Y7NL 4A3KL 2WAQP 4C3IL 5M3FL 2R7ZL 4BY1L 2VUML 3GTOL 5FLML 4A3BL 3GTKL 5C3EL 3S16L 3S15L 3H0GL 3RZDL 4Y52L 1WCML 3HOVL 1K83L 1Y1VL 2JA8L 3HKZP 3S1NL 4BBRL 3GTML 1I6HL 2R92L 1R9TL 1I50L 2E2HL 2NVQL 4A3JL 3HOWL 3S1QL 4A3DL 5IP7L 2Y0SP 1TWCL 4C2M1 5FJ8L 3GTGL 3GTLL 3S2DL 5C44L 3S1ML 5IYBL 4BBSL 3M3YL
chains in the Genus database with same CATH superfamily
4K9FA 3MPSA 1YK4A 4LHNA 1RDVA 1I3QL 1PFVA 1QYBA 3S1RL 4G6BA 1NNQA 2PMZP 1PFWA 2M4VA 4B8CD 4C3HL 1S2ZA 2L0ZA 3H97A 3HJWB 2JI2A 4AR6A 3K35A 1R0JA 3H99A 3RYGA 5H1Sc 4TVMA 2CKAA 3MQKB 3GTPL 2E2JL 4A3IL 2PVEA 3LWPB 3FKIL 2J9UB 3S14L 4AR5A 1IROA 3P8BA 2A6HD 2M6OA 5GAEc 4A3KL 3ZG6A 2DSXA 2WAQP 1P7PA 4AR3A 2VUML 3H9BA 1IU6A 2VL6A 5AI3A 3LWVB 5JVG1 2CR8A 5MF6A 3S1NL 4YWLA 2E2HL 2NVQL 4LHLA 5IP7L 3QQCE 1TWCL 4C2M1 3WWNB 4XGHA 1BFYA 5IYBL 1B13A 2V3BB 1QCVA 1Y1WL 3SS2A 1DX8A 4C3JL 3HOUL 5JVH1 1OWBA 3I4NL 8RXNA 3GTJL 4JAEA 1T9PA 2HR5A 2JA5L 2ZIXA 2WB1P 3LWQB 5RXNA 5DM71 4V196 6RXNA 4E6YA 1IW7D 2NVTL 2AUSB 1B71A 1YUXA 5MFZA 1ZRPA 3IU3I 2A6ED 3H9CA 2A69D 2H12A 2Z3RB 1TWAL 1WJVA 3KYVA 3LPEB 1PFYA 1LTLA 1NXEA 2M6PA 4AI0A 2JI3A 2M4YA 3S2HL 2LCQA 1JYBA 3NFPI 3S17L 4A3GL 2V0EA 3J7Y1 5M3FL 2C6AA 2QL0A 3HJYB 3GTOL 4A3BL 1QQTA 5MLC3 5C3EL 2APOB 3PKJA 1SMUA 1BQ8A 4JAFA 2CKCA 5AI2A 4YWMA 3RZDL 5MFPA 2XJSA 4BBRL 2JI1A 1PFUA 3GTML 4AI2A 2R92L 4JADA 4AHWA 1R9TL 2RFKB 3S1QL 3JR7A 1PZXA 7RXNA 1T9QA 1VZGA 3KYXA 3GTGL 1IU5A 2Z3QB 1DVBA 3QVDA 4X6AL 1R0GA 1B2OA 1T9OA 2XJUA 1LKPA 3RZ6A 1SMWA 5GADc 4A3ML 5C4JL 1NXGA 4RXNA 4AHZA 5M5XL 1TWGL 5GAGc 3GTQL 2K2DA 1R0HA 3LWRB 2XJVA 1IRNA 5MGNA 2B63L 1CADA 5IYDL 1CAAA 2C6BA 1FHMA 1BQ9A 4A3FL 2NVXL 5GAHc 5M3ML 3J7Z1 2JA6L 2AQCA 4A93L 3P2AA 2E2IL 5C4XL 3B0AB 2PPTA 4A3CL 1RB9A 4BXXL 3CQZL 3PZAA 1FHHA 4C3IL 1BE7A 4XXBB 4ZN1B 3PWFA 1F4LA 2ERSA 1YV1A 2GMGA 3S16L 3H0GL 1E8JA 4AR4A 4Y52L 3PL5A 1WCML 1K83L 2RDVA 1Y1VL 3HKZP 1VCXA 2XJRA 1I50L 1Z92B 4U671 4POGA 4TPUA 2EY4E 1BRFA 4WFN1 2HVYC 2V0FA 2XJPA 2XJQA 1YK5A 3PKIA 5FJ8L 3GTLL 3S1ML 1S24A 2O5JD 4BBSL 5EINC 3M3YL 1VZIA 3PIO1 5M5YL 2PVXA 2AYJA 5IP9L 1H7VA 5K2ME 1SFOL 1TWHL 1LKMA 5IYCL 2NYDA 5M5WL 3H3VM 3B08B 4AI3A 2XJTA 3PIP1 3KYWA 1TWFL 3M4OL 3HOZL 4AYBP 2NVYL 5IY0A 2YU9L 3WWLA 1VZHA 3KYYA 3K7AL 3PO3L 3HOXL 4POFA 3PO2L 4QIWP 1C09A 1RYQA 1S30A 3RZOL 4BY7L 3FDJA 3MSUA 2B5ID 2PSMC 1R0FA 4ME3A 5DM61 2ERJA 3A44A 3LWOB 2JA7L 2R93L 3HOYL 4AI1A 3HAXC 3I4ML 2A68D 4A3EL 4A3LL 4Y7NL 1ODHA 4UY81 2R7ZL 5AN9H 4GS7D 4BY1L 2BE5D 1YUZA 5FLML 3GTKL 3S15L 1RYTA 1SMMA 4AHYA 1OWCA 3HOVL 3VPBE 1B2JA 3LNLA 4JAGA 2JA8L 1R0IA 1I6HL 1RWDA 2PYAA 4A3JL 3HOWL 4A3DL 2Y0SP 3RZTA 1LKOA 1RDGA 4ZN3B 5EIOC 2MS3A 3S2DL 5C44L 4AHXA 2KN9A 3KYUA 2KKDA
chains in the Genus database with same CATH topology
1Y1WL 5M5YL 5IP9L 4A3ML 1SFOL 1TWHL 4C3JL 5C4JL 5IYCL 1I3QL 5M5WL 3H3VM 3HOUL 3S1RL 3I4NL 4X6AL 2PMZP 5M5XL 3GTJL 1TWFL 3M4OL 1TWGL 2JA5L 3HOZL 2WB1P 3GTQL 4AYBP 4C3HL 2NVYL 2YU9L 2NVTL 2B63L 3K7AL 3PO3L 3HOXL 5IYDL 3PO2L 4QIWP 4A3FL 3RZOL 4BY7L 2NVXL 5M3ML 2JA6L 1TWAL 3GTPL 2E2JL 4A3IL 4A93L 3FKIL 3S14L 2E2IL 2JA7L 5C4XL 4A3CL 2R93L 4BXXL 3S2HL 3HOYL 3CQZL 3I4ML 3S17L 4A3GL 4A3EL 4A3LL 4Y7NL 4A3KL 2WAQP 4C3IL 5M3FL 2R7ZL 4BY1L 2VUML 3GTOL 5FLML 4A3BL 3GTKL 5C3EL 3S16L 3S15L 3H0GL 3RZDL 4Y52L 1WCML 3HOVL 1K83L 1Y1VL 2JA8L 3HKZP 3S1NL 4BBRL 3GTML 1I6HL 2R92L 1R9TL 1I50L 2E2HL 2NVQL 4A3JL 3HOWL 3S1QL 4A3DL 5IP7L 2Y0SP 1TWCL 4C2M1 5FJ8L 3GTGL 3GTLL 3S2DL 5C44L 3S1ML 5IYBL 4BBSL 3M3YL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1W L;  5M5Y L;  5IP9 L;  4A3M L;  1SFO L;  1TWH L;  4C3J L;  5C4J L;  5IYC L;  1I3Q L;  5M5W L;  3H3V M;  3HOU L;  3S1R L;  3I4N L;  4X6A L;  2PMZ P;  5M5X L;  3GTJ L;  1TWF L;  3M4O L;  1TWG L;  2JA5 L;  3HOZ L;  2WB1 P;  3GTQ L;  4AYB P;  4C3H L;  2NVY L;  2YU9 L;  2NVT L;  2B63 L;  3K7A L;  3PO3 L;  3HOX L;  5IYD L;  3PO2 L;  4QIW P;  4A3F L;  3RZO L;  4BY7 L;  2NVX L;  5M3M L;  2JA6 L;  1TWA L;  3GTP L;  2E2J L;  4A3I L;  4A93 L;  3FKI L;  3S14 L;  2E2I L;  2JA7 L;  5C4X L;  4A3C L;  2R93 L;  4BXX L;  3S2H L;  3HOY L;  3CQZ L;  3I4M L;  3S17 L;  4A3G L;  4A3E L;  4A3L L;  4Y7N L;  4A3K L;  2WAQ P;  4C3I L;  5M3F L;  2R7Z L;  4BY1 L;  2VUM L;  3GTO L;  5FLM L;  4A3B L;  3GTK L;  5C3E L;  3S16 L;  3S15 L;  3H0G L;  3RZD L;  4Y52 L;  1WCM L;  3HOV L;  1K83 L;  1Y1V L;  2JA8 L;  3HKZ P;  3S1N L;  4BBR L;  3GTM L;  1I6H L;  2R92 L;  1R9T L;  1I50 L;  2E2H L;  2NVQ L;  4A3J L;  3HOW L;  3S1Q L;  4A3D L;  5IP7 L;  2Y0S P;  1TWC L;  4C2M 1;  5FJ8 L;  3GTG L;  3GTL L;  3S2D L;  5C44 L;  3S1M L;  5IYB L;  4BBS L;  3M3Y L; 
#chains in the Genus database with same CATH topology
 4K9F A;  3MPS A;  1YK4 A;  4LHN A;  1RDV A;  1I3Q L;  1PFV A;  1QYB A;  3S1R L;  4G6B A;  1NNQ A;  2PMZ P;  1PFW A;  2M4V A;  4B8C D;  4C3H L;  1S2Z A;  2L0Z A;  3H97 A;  3HJW B;  2JI2 A;  4AR6 A;  3K35 A;  1R0J A;  3H99 A;  3RYG A;  5H1S c;  4TVM A;  2CKA A;  3MQK B;  3GTP L;  2E2J L;  4A3I L;  2PVE A;  3LWP B;  3FKI L;  2J9U B;  3S14 L;  4AR5 A;  1IRO A;  3P8B A;  2A6H D;  2M6O A;  5GAE c;  4A3K L;  3ZG6 A;  2DSX A;  2WAQ P;  1P7P A;  4AR3 A;  2VUM L;  3H9B A;  1IU6 A;  2VL6 A;  5AI3 A;  3LWV B;  5JVG 1;  2CR8 A;  5MF6 A;  3S1N L;  4YWL A;  2E2H L;  2NVQ L;  4LHL A;  5IP7 L;  3QQC E;  1TWC L;  4C2M 1;  3WWN B;  4XGH A;  1BFY A;  5IYB L;  1B13 A;  2V3B B;  1QCV A;  1Y1W L;  3SS2 A;  1DX8 A;  4C3J L;  3HOU L;  5JVH 1;  1OWB A;  3I4N L;  8RXN A;  3GTJ L;  4JAE A;  1T9P A;  2HR5 A;  2JA5 L;  2ZIX A;  2WB1 P;  3LWQ B;  5RXN A;  5DM7 1;  4V19 6;  6RXN A;  4E6Y A;  1IW7 D;  2NVT L;  2AUS B;  1B71 A;  1YUX A;  5MFZ A;  1ZRP A;  3IU3 I;  2A6E D;  3H9C A;  2A69 D;  2H12 A;  2Z3R B;  1TWA L;  1WJV A;  3KYV A;  3LPE B;  1PFY A;  1LTL A;  1NXE A;  2M6P A;  4AI0 A;  2JI3 A;  2M4Y A;  3S2H L;  2LCQ A;  1JYB A;  3NFP I;  3S17 L;  4A3G L;  2V0E A;  3J7Y 1;  5M3F L;  2C6A A;  2QL0 A;  3HJY B;  3GTO L;  4A3B L;  1QQT A;  5MLC 3;  5C3E L;  2APO B;  3PKJ A;  1SMU A;  1BQ8 A;  4JAF A;  2CKC A;  5AI2 A;  4YWM A;  3RZD L;  5MFP A;  2XJS A;  4BBR L;  2JI1 A;  1PFU A;  3GTM L;  4AI2 A;  2R92 L;  4JAD A;  4AHW A;  1R9T L;  2RFK B;  3S1Q L;  3JR7 A;  1PZX A;  7RXN A;  1T9Q A;  1VZG A;  3KYX A;  3GTG L;  1IU5 A;  2Z3Q B;  1DVB A;  3QVD A;  4X6A L;  1R0G A;  1B2O A;  1T9O A;  2XJU A;  1LKP A;  3RZ6 A;  1SMW A;  5GAD c;  4A3M L;  5C4J L;  1NXG A;  4RXN A;  4AHZ A;  5M5X L;  1TWG L;  5GAG c;  3GTQ L;  2K2D A;  1R0H A;  3LWR B;  2XJV A;  1IRN A;  5MGN A;  2B63 L;  1CAD A;  5IYD L;  1CAA A;  2C6B A;  1FHM A;  1BQ9 A;  4A3F L;  2NVX L;  5GAH c;  5M3M L;  3J7Z 1;  2JA6 L;  2AQC A;  4A93 L;  3P2A A;  2E2I L;  5C4X L;  3B0A B;  2PPT A;  4A3C L;  1RB9 A;  4BXX L;  3CQZ L;  3PZA A;  1FHH A;  4C3I L;  1BE7 A;  4XXB B;  4ZN1 B;  3PWF A;  1F4L A;  2ERS A;  1YV1 A;  2GMG A;  3S16 L;  3H0G L;  1E8J A;  4AR4 A;  4Y52 L;  3PL5 A;  1WCM L;  1K83 L;  2RDV A;  1Y1V L;  3HKZ P;  1VCX A;  2XJR A;  1I50 L;  1Z92 B;  4U67 1;  4POG A;  4TPU A;  2EY4 E;  1BRF A;  4WFN 1;  2HVY C;  2V0F A;  2XJP A;  2XJQ A;  1YK5 A;  3PKI A;  5FJ8 L;  3GTL L;  3S1M L;  1S24 A;  2O5J D;  4BBS L;  5EIN C;  3M3Y L;  1VZI A;  3PIO 1;  5M5Y L;  2PVX A;  2AYJ A;  5IP9 L;  1H7V A;  5K2M E;  1SFO L;  1TWH L;  1LKM A;  5IYC L;  2NYD A;  5M5W L;  3H3V M;  3B08 B;  4AI3 A;  2XJT A;  3PIP 1;  3KYW A;  1TWF L;  3M4O L;  3HOZ L;  4AYB P;  2NVY L;  5IY0 A;  2YU9 L;  3WWL A;  1VZH A;  3KYY A;  3K7A L;  3PO3 L;  3HOX L;  4POF A;  3PO2 L;  4QIW P;  1C09 A;  1RYQ A;  1S30 A;  3RZO L;  4BY7 L;  3FDJ A;  3MSU A;  2B5I D;  2PSM C;  1R0F A;  4ME3 A;  5DM6 1;  2ERJ A;  3A44 A;  3LWO B;  2JA7 L;  2R93 L;  3HOY L;  4AI1 A;  3HAX C;  3I4M L;  2A68 D;  4A3E L;  4A3L L;  4Y7N L;  1ODH A;  4UY8 1;  2R7Z L;  5AN9 H;  4GS7 D;  4BY1 L;  2BE5 D;  1YUZ A;  5FLM L;  3GTK L;  3S15 L;  1RYT A;  1SMM A;  4AHY A;  1OWC A;  3HOV L;  3VPB E;  1B2J A;  3LNL A;  4JAG A;  2JA8 L;  1R0I A;  1I6H L;  1RWD A;  2PYA A;  4A3J L;  3HOW L;  4A3D L;  2Y0S P;  3RZT A;  1LKO A;  1RDG A;  4ZN3 B;  5EIO C;  2MS3 A;  3S2D L;  5C44 L;  4AHX A;  2KN9 A;  3KYU A;  2KKD A; 
#chains in the Genus database with same CATH homology
 1Y1W L;  5M5Y L;  5IP9 L;  4A3M L;  1SFO L;  1TWH L;  4C3J L;  5C4J L;  5IYC L;  1I3Q L;  5M5W L;  3H3V M;  3HOU L;  3S1R L;  3I4N L;  4X6A L;  2PMZ P;  5M5X L;  3GTJ L;  1TWF L;  3M4O L;  1TWG L;  2JA5 L;  3HOZ L;  2WB1 P;  3GTQ L;  4AYB P;  4C3H L;  2NVY L;  2YU9 L;  2NVT L;  2B63 L;  3K7A L;  3PO3 L;  3HOX L;  5IYD L;  3PO2 L;  4QIW P;  4A3F L;  3RZO L;  4BY7 L;  2NVX L;  5M3M L;  2JA6 L;  1TWA L;  3GTP L;  2E2J L;  4A3I L;  4A93 L;  3FKI L;  3S14 L;  2E2I L;  2JA7 L;  5C4X L;  4A3C L;  2R93 L;  4BXX L;  3S2H L;  3HOY L;  3CQZ L;  3I4M L;  3S17 L;  4A3G L;  4A3E L;  4A3L L;  4Y7N L;  4A3K L;  2WAQ P;  4C3I L;  5M3F L;  2R7Z L;  4BY1 L;  2VUM L;  3GTO L;  5FLM L;  4A3B L;  3GTK L;  5C3E L;  3S16 L;  3S15 L;  3H0G L;  3RZD L;  4Y52 L;  1WCM L;  3HOV L;  1K83 L;  1Y1V L;  2JA8 L;  3HKZ P;  3S1N L;  4BBR L;  3GTM L;  1I6H L;  2R92 L;  1R9T L;  1I50 L;  2E2H L;  2NVQ L;  4A3J L;  3HOW L;  3S1Q L;  4A3D L;  5IP7 L;  2Y0S P;  1TWC L;  4C2M 1;  5FJ8 L;  3GTG L;  3GTL L;  3S2D L;  5C44 L;  3S1M L;  5IYB L;  4BBS L;  3M3Y L; 
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