2RFKB

Substrate rna positioning in the archaeal h/aca ribonucleoprotein complex
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
53
structure length
53
Chain Sequence
FRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (28-29)TIV1 (20-23)S1 (6-7)TI1 (8-11)S2 (14-15)TIV2 (36-39)AH1 (41-52)Updating...
connected with : NaN
molecule tags Isomerase/rna
source organism Pyrococcus furiosus
publication title Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex.
pubmed doi rcsb
molecule keywords guide RNA 1
total genus 8
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2007-09-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.40 Mainly Beta Single Sheet Rubrerythrin, domain 2 H/ACA ribonucleoprotein complex, subunit Nop10 2rfkB00
3MQKB 3LWQB 2RFKB 3HJWB 2AUSB 2AQCA 3LWVB 2HVYC 2APOB 3HJYB 3LWOB 3LWRB 3HAXC 3LWPB 2EY4E
chains in the Genus database with same CATH superfamily
3CQZL 1SMMA 5IYCL 1IU6A 4XXBB 3ZG6A 2ERSA 4AI0A 4A3CL 2MS3A 1RDVA 2V0FA 3PWFA 4TPUA 3S1NL 1BQ8A 3S15L 1SMUA 2Y0SP 3KYXA 1S24A 2JA6L 1QYBA 5IY0A 1PFWA 5MFZA 1BE7A 1S2ZA 5RXNA 1R0IA 1Y1WL 4YWLA 1E8JA 2PMZP 2XJRA 3M4OL 3HAXC 1DVBA 3PKJA 3HOWL 4XGHA 1ZRPA 3HOVL 1VZHA 2M6PA 2B5ID 1IW7D 3S1RL 4YWMA 4C3IL 3H99A 1RYTA 3B08B 3HJWB 4A3EL 1RYQA 1YUXA 4AHXA 5EINC 2KN9A 3HOZL 1OWBA 2JA5L 4BY7L 3QVDA 4A3BL 5AI3A 3VPBE 2JA8L 3LWPB 1OWCA 6RXNA 3S1ML 1SFOL 2JI2A 2E2HL 3S1QL 2XJVA 3HOUL 4A3IL 3KYYA 1QCVA 4B8CD 5MF6A 1R0HA 4WFN1 1QQTA 4JAGA 2AQCA 3S16L 3SS2A 5GADc 4BY1L 3GTGL 4UY81 3P8BA 3J7Z1 2R7ZL 1CADA 2A6ED 1VCXA 3MSUA 1I50L 1PFYA 3FKIL 3RYGA 4POFA 1ODHA 3PL5A 2NVQL 5C4JL 4ME3A 2NVTL 2M4YA 4AR5A 4A93L 1VZGA 2HVYC 1B13A 2L0ZA 2Z3QB 3JR7A 4C3HL 4AHYA 1JYBA 1F4LA 2NVXL 4G6BA 5M5YL 1PFVA 2PPTA 1NXGA 3RZDL 3GTPL 3RZOL 4C2M1 4ZN3B 2A69D 1RB9A 3LNLA 2O5JD 1YUZA 5JVH1 2JI3A 5M5WL 4AHZA 2VL6A 5MGNA 4AR6A 1YK5A 1LKOA 1C09A 1PZXA 1CAAA 4A3LL 4Y52L 7RXNA 3P2AA 2XJUA 2XJPA 4RXNA 1B71A 2V0EA 2AYJA 3H97A 3MPSA 2V3BB 5IP7L 3NFPI 2BE5D 2CR8A 1BQ9A 3GTML 5C44L 5GAGc 2ZIXA 2Z3RB 3H9CA 3LPEB 5GAHc 3GTQL 1TWAL 1Z92B 1Y1VL 3PO3L 3H9BA 3GTKL 2A6HD 1PFUA 3H3VM 5M3FL 5M3ML 2LCQA 3S2HL 3PO2L 1TWGL 5DM61 2VUML 3GTJL 1LKPA 3KYVA 4A3FL 2H12A 2DSXA 3K35A 2GMGA 3MQKB 2YU9L 5C3EL 1I6HL 4A3KL 2NYDA 2PVEA 1IRNA 1I3QL 3PZAA 1T9OA 3M3YL 2AUSB 5K2ME 1YK4A 3HOYL 2WB1P 4A3JL 1T9QA 8RXNA 5MLC3 1P7PA 4V196 4POGA 5EIOC 1RDGA 2XJQA 4A3ML 2APOB 4TVMA 1B2OA 1BFYA 3HJYB 1R9TL 1LTLA 3HKZP 3A44A 4LHLA 4BBSL 5M5XL 5JVG1 1LKMA 5FJ8L 4JADA 3LWRB 3PKIA 1VZIA 2K2DA 2PSMC 5C4XL 4AR3A 3S14L 2JI1A 2WAQP 1NNQA 3WWNB 1DX8A 2KKDA 3GTLL 1FHMA 3PIO1 4K9FA 2XJTA 1IU5A 3PIP1 3S17L 2CKAA 1TWHL 1IROA 4A3DL 2M4VA 1NXEA 3S2DL 5FLML 1TWCL 4AYBP 1B2JA 3LWVB 1K83L 5IYDL 4JAEA 2E2JL 4U671 1S30A 5GAEc 1SMWA 2C6BA 4BBRL 3J7Y1 2M6OA 4A3GL 3FDJA 4LHNA 3IU3I 2EY4E 2HR5A 2A68D 5IP9L 2RDVA 5IYBL 4AHWA 3GTOL 2R93L 2JA7L 2RFKB 1RWDA 2PVXA 4C3JL 3I4NL 2NVYL 4AI2A 2E2IL 4GS7D 4BXXL 1H7VA 1R0GA 4JAFA 5AN9H 1R0FA 5AI2A 3H0GL 3LWOB 1YV1A 2B63L 4QIWP 1TWFL 3HOXL 5DM71 1WCML 2XJSA 2PYAA 4ZN1B 4Y7NL 4E6YA 2C6AA 1BRFA 2R92L 4X6AL 1R0JA 2QL0A 4AR4A 2ERJA 2J9UB 2CKCA 1WJVA 3K7AL 4AI1A 3KYWA 3RZTA 3B0AB 3KYUA 1T9PA 5MFPA 3WWLA 3RZ6A 1FHHA 4AI3A 3I4ML 3QQCE 3LWQB 5H1Sc
chains in the Genus database with same CATH topology
3MQKB 3LWQB 2RFKB 3HJWB 2AUSB 2AQCA 3LWVB 2HVYC 2APOB 3HJYB 3LWOB 3LWRB 3HAXC 3LWPB 2EY4E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MQK B;  3LWQ B;  2RFK B;  3HJW B;  2AUS B;  2AQC A;  3LWV B;  2HVY C;  2APO B;  3HJY B;  3LWO B;  3LWR B;  3HAX C;  3LWP B;  2EY4 E; 
#chains in the Genus database with same CATH topology
 3CQZ L;  1SMM A;  5IYC L;  1IU6 A;  4XXB B;  3ZG6 A;  2ERS A;  4AI0 A;  4A3C L;  2MS3 A;  1RDV A;  2V0F A;  3PWF A;  4TPU A;  3S1N L;  1BQ8 A;  3S15 L;  1SMU A;  2Y0S P;  3KYX A;  1S24 A;  2JA6 L;  1QYB A;  5IY0 A;  1PFW A;  5MFZ A;  1BE7 A;  1S2Z A;  5RXN A;  1R0I A;  1Y1W L;  4YWL A;  1E8J A;  2PMZ P;  2XJR A;  3M4O L;  3HAX C;  1DVB A;  3PKJ A;  3HOW L;  4XGH A;  1ZRP A;  3HOV L;  1VZH A;  2M6P A;  2B5I D;  1IW7 D;  3S1R L;  4YWM A;  4C3I L;  3H99 A;  1RYT A;  3B08 B;  3HJW B;  4A3E L;  1RYQ A;  1YUX A;  4AHX A;  5EIN C;  2KN9 A;  3HOZ L;  1OWB A;  2JA5 L;  4BY7 L;  3QVD A;  4A3B L;  5AI3 A;  3VPB E;  2JA8 L;  3LWP B;  1OWC A;  6RXN A;  3S1M L;  1SFO L;  2JI2 A;  2E2H L;  3S1Q L;  2XJV A;  3HOU L;  4A3I L;  3KYY A;  1QCV A;  4B8C D;  5MF6 A;  1R0H A;  4WFN 1;  1QQT A;  4JAG A;  2AQC A;  3S16 L;  3SS2 A;  5GAD c;  4BY1 L;  3GTG L;  4UY8 1;  3P8B A;  3J7Z 1;  2R7Z L;  1CAD A;  2A6E D;  1VCX A;  3MSU A;  1I50 L;  1PFY A;  3FKI L;  3RYG A;  4POF A;  1ODH A;  3PL5 A;  2NVQ L;  5C4J L;  4ME3 A;  2NVT L;  2M4Y A;  4AR5 A;  4A93 L;  1VZG A;  2HVY C;  1B13 A;  2L0Z A;  2Z3Q B;  3JR7 A;  4C3H L;  4AHY A;  1JYB A;  1F4L A;  2NVX L;  4G6B A;  5M5Y L;  1PFV A;  2PPT A;  1NXG A;  3RZD L;  3GTP L;  3RZO L;  4C2M 1;  4ZN3 B;  2A69 D;  1RB9 A;  3LNL A;  2O5J D;  1YUZ A;  5JVH 1;  2JI3 A;  5M5W L;  4AHZ A;  2VL6 A;  5MGN A;  4AR6 A;  1YK5 A;  1LKO A;  1C09 A;  1PZX A;  1CAA A;  4A3L L;  4Y52 L;  7RXN A;  3P2A A;  2XJU A;  2XJP A;  4RXN A;  1B71 A;  2V0E A;  2AYJ A;  3H97 A;  3MPS A;  2V3B B;  5IP7 L;  3NFP I;  2BE5 D;  2CR8 A;  1BQ9 A;  3GTM L;  5C44 L;  5GAG c;  2ZIX A;  2Z3R B;  3H9C A;  3LPE B;  5GAH c;  3GTQ L;  1TWA L;  1Z92 B;  1Y1V L;  3PO3 L;  3H9B A;  3GTK L;  2A6H D;  1PFU A;  3H3V M;  5M3F L;  5M3M L;  2LCQ A;  3S2H L;  3PO2 L;  1TWG L;  5DM6 1;  2VUM L;  3GTJ L;  1LKP A;  3KYV A;  4A3F L;  2H12 A;  2DSX A;  3K35 A;  2GMG A;  3MQK B;  2YU9 L;  5C3E L;  1I6H L;  4A3K L;  2NYD A;  2PVE A;  1IRN A;  1I3Q L;  3PZA A;  1T9O A;  3M3Y L;  2AUS B;  5K2M E;  1YK4 A;  3HOY L;  2WB1 P;  4A3J L;  1T9Q A;  8RXN A;  5MLC 3;  1P7P A;  4V19 6;  4POG A;  5EIO C;  1RDG A;  2XJQ A;  4A3M L;  2APO B;  4TVM A;  1B2O A;  1BFY A;  3HJY B;  1R9T L;  1LTL A;  3HKZ P;  3A44 A;  4LHL A;  4BBS L;  5M5X L;  5JVG 1;  1LKM A;  5FJ8 L;  4JAD A;  3LWR B;  3PKI A;  1VZI A;  2K2D A;  2PSM C;  5C4X L;  4AR3 A;  3S14 L;  2JI1 A;  2WAQ P;  1NNQ A;  3WWN B;  1DX8 A;  2KKD A;  3GTL L;  1FHM A;  3PIO 1;  4K9F A;  2XJT A;  1IU5 A;  3PIP 1;  3S17 L;  2CKA A;  1TWH L;  1IRO A;  4A3D L;  2M4V A;  1NXE A;  3S2D L;  5FLM L;  1TWC L;  4AYB P;  1B2J A;  3LWV B;  1K83 L;  5IYD L;  4JAE A;  2E2J L;  4U67 1;  1S30 A;  5GAE c;  1SMW A;  2C6B A;  4BBR L;  3J7Y 1;  2M6O A;  4A3G L;  3FDJ A;  4LHN A;  3IU3 I;  2EY4 E;  2HR5 A;  2A68 D;  5IP9 L;  2RDV A;  5IYB L;  4AHW A;  3GTO L;  2R93 L;  2JA7 L;  2RFK B;  1RWD A;  2PVX A;  4C3J L;  3I4N L;  2NVY L;  4AI2 A;  2E2I L;  4GS7 D;  4BXX L;  1H7V A;  1R0G A;  4JAF A;  5AN9 H;  1R0F A;  5AI2 A;  3H0G L;  3LWO B;  1YV1 A;  2B63 L;  4QIW P;  1TWF L;  3HOX L;  5DM7 1;  1WCM L;  2XJS A;  2PYA A;  4ZN1 B;  4Y7N L;  4E6Y A;  2C6A A;  1BRF A;  2R92 L;  4X6A L;  1R0J A;  2QL0 A;  4AR4 A;  2ERJ A;  2J9U B;  2CKC A;  1WJV A;  3K7A L;  4AI1 A;  3KYW A;  3RZT A;  3B0A B;  3KYU A;  1T9P A;  5MFP A;  3WWL A;  3RZ6 A;  1FHH A;  4AI3 A;  3I4M L;  3QQC E;  3LWQ B;  5H1S c; 
#chains in the Genus database with same CATH homology
 3MQK B;  3LWQ B;  2RFK B;  3HJW B;  2AUS B;  2AQC A;  3LWV B;  2HVY C;  2APO B;  3HJY B;  3LWO B;  3LWR B;  3HAX C;  3LWP B;  2EY4 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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