2JA7L

Cpd lesion containing rna polymerase ii elongation complex c
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cpd Damage Recognition by Transcribing RNA Polymerase II.
pubmed doi rcsb
molecule keywords 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3'
molecule tags Transferase
total genus 1
structure length 46
sequence length 46
chains with identical sequence X
ec nomenclature
pdb deposition date 2006-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2ja7L00
5M5YL 2R7ZL 2NVXL 2JA8L 1K83L 2NVQL 4AYBP 2JA6L 1Y1VL 4BY1L 3GTPL 4QIWP 1WCML 4A3EL 2E2JL 2PMZP 3K7AL 3GTOL 3FKIL 4C3JL 5IYCL 5M3FL 1I3QL 4Y7NL 3M4OL 2VUML 3S16L 4A3ML 2E2IL 3S1ML 3GTJL 3I4ML 5M5XL 3S2HL 1TWCL 5C3EL 2JA5L 3GTLL 3I4NL 3PO2L 2YU9L 2WB1P 2WAQP 4A93L 3HOUL 1I6HL 1TWFL 3RZOL 5IYBL 4C2M1 1Y1WL 2Y0SP 5IYDL 3S2DL 3H0GL 1TWGL 4X6AL 5FJ8L 3GTML 3CQZL 2R93L 2B63L 3S14L 3HOVL 4A3KL 4A3GL 4A3FL 1TWHL 2R92L 4A3LL 4Y52L 4BXXL 4A3JL 3HOXL 4C3IL 5M5WL 3RZDL 3GTGL 4A3DL 2NVYL 4A3BL 2E2HL 3HOWL 4BBSL 3PO3L 3S1QL 1SFOL 3H3VM 5C4JL 1TWAL 3HOZL 5M3ML 3S1NL 5C44L 3GTKL 5C4XL 3S1RL 3HOYL 4A3IL 3M3YL 1I50L 1R9TL 4A3CL 3S15L 3S17L 5IP7L 5FLML 5IP9L 3GTQL 4C3HL 2NVTL 4BBRL 3HKZP 2JA7L 4BY7L
chains in the Genus database with same CATH superfamily
3SS2A 1R0GA 5GAGc 4AYBP 4BY1L 3GTPL 2KKDA 4A3EL 1RWDA 4XXBB 4RXNA 5DM61 4K9FA 2A6ED 1NXGA 1T9QA 4JAEA 2E2IL 3S2HL 1TWCL 3H99A 5C3EL 3GTLL 3LWVB 4A93L 1I6HL 6RXNA 3H9BA 2ZIXA 3H97A 5JVH1 3RZOL 1YUZA 3CQZL 5K2ME 4UY81 1PFWA 2PVXA 3S14L 5IY0A 4A3KL 4LHLA 1NXEA 1S2ZA 1TWHL 2R92L 1S24A 5M5WL 5MF6A 3PKJA 3RZDL 2C6BA 1F4LA 3GTGL 2Z3RB 2RFKB 1B71A 1VZHA 3ZG6A 4BBSL 3PZAA 2EY4E 2JI3A 5EIOC 1BRFA 2M6OA 3H3VM 7RXNA 4G6BA 2MS3A 1LKPA 3GTKL 1BE7A 2BE5D 3KYVA 5AN9H 1RDGA 3MPSA 3HOYL 2GMGA 4YWMA 4A3IL 2JI2A 1I50L 1R9TL 3M3YL 4A3CL 3S15L 5GADc 5IP9L 2CR8A 1S30A 4ZN3B 5H1Sc 2AUSB 1VCXA 2AYJA 5AI3A 5M5YL 3LPEB 2JA8L 2HVYC 4AR6A 2V0FA 3VPBE 2NVQL 1Y1VL 4QIWP 2Z3QB 2PMZP 1YV1A 5MGNA 1R0HA 4V196 3KYYA 3FKIL 2M4YA 2HR5A 5IYCL 1OWCA 1RDVA 3JR7A 5M3FL 1I3QL 3PL5A 1IU5A 1T9PA 4Y7NL 2J9UB 3B08B 5GAHc 2XJUA 3S16L 3LWOB 4A3ML 2XJVA 3GTJL 3HAXC 5M5XL 2A68D 1R0JA 2JA5L 2APOB 1FHMA 2YU9L 1WJVA 1BQ9A 3HJYB 2QL0A 3HOUL 2H12A 1DVBA 3LWRB 2ERSA 4AHWA 2Y0SP 1CAAA 4X6AL 3GTML 5EINC 3A44A 1RYQA 4XGHA 1NNQA 4Y52L 4BXXL 3HOXL 2PYAA 4JAFA 3K35A 1R0FA 1IU6A 5JVG1 4A3DL 3S1QL 1PFVA 1ODHA 3HOZL 5MFPA 5M3ML 2JI1A 3S1RL 3RZ6A 4WFN1 3PWFA 5DM71 5IP7L 5FLML 3WWLA 1PFYA 2PSMC 4TPUA 1CADA 3P8BA 1QCVA 4AR5A 4BY7L 2XJSA 3H9CA 2R7ZL 2NVXL 8RXNA 1DX8A 1LKMA 1YK4A 2PPTA 4C3JL 5RXNA 2DSXA 3J7Z1 5MFZA 3QQCE 4AHXA 3M4OL 1BQ8A 4JADA 4TVMA 1YK5A 1Z92B 1SMUA 3I4ML 1B2OA 3I4NL 1T9OA 3PO2L 2WAQP 3LNLA 1OWBA 3PIP1 5IYBL 1Y1WL 2LCQA 3H0GL 1LTLA 2R93L 1IRNA 2CKAA 2AQCA 3FDJA 1FHHA 3PKIA 2B63L 4AI1A 2B5ID 2L0ZA 4A3GL 1BFYA 2V3BB 4A3FL 4A3LL 4A3JL 4C3IL 4POFA 1IROA 1PFUA 2RDVA 1H7VA 2NVYL 4ME3A 4A3BL 2K2DA 5GAEc 1R0IA 3PO3L 3HJWB 1LKOA 1QQTA 1JYBA 5C4JL 4GS7D 1TWAL 5MLC3 4LHNA 5C44L 5C4XL 3PIO1 3LWQB 3S17L 2NVTL 4BBRL 3HKZP 2JA7L 1P7PA 3KYXA 3KYUA 4POGA 1RB9A 3WWNB 4AHYA 1K83L 2VL6A 2JA6L 3RYGA 1WCML 2E2JL 1RYTA 3K7AL 3GTOL 2XJRA 3MSUA 1PZXA 2CKCA 3KYWA 2XJPA 2VUML 4AI0A 2A69D 3S1ML 4JAGA 1IW7D 2WB1P 3LWPB 2NYDA 4AR4A 1TWFL 3J7Y1 2M6PA 3QVDA 1SMMA 4C2M1 3S2DL 5IYDL 2KN9A 3IU3I 1TWGL 1ZRPA 1C09A 1E8JA 2ERJA 5FJ8L 2XJQA 3HOVL 4AI3A 4ZN1B 4E6YA 3RZTA 2PVEA 3B0AB 1QYBA 1YUXA 2M4VA 2E2HL 4AI2A 3HOWL 2C6AA 1SMWA 2A6HD 4AR3A 2V0EA 1VZIA 2XJTA 1SFOL 5AI2A 3S1NL 3P2AA 1VZGA 1B13A 4AHZA 2O5JD 1B2JA 4YWLA 3GTQL 4U671 4C3HL 3NFPI 4B8CD 3MQKB
chains in the Genus database with same CATH topology
5M5YL 2R7ZL 2NVXL 2JA8L 1K83L 2NVQL 4AYBP 2JA6L 1Y1VL 4BY1L 3GTPL 4QIWP 1WCML 4A3EL 2E2JL 2PMZP 3K7AL 3GTOL 3FKIL 4C3JL 5IYCL 5M3FL 1I3QL 4Y7NL 3M4OL 2VUML 3S16L 4A3ML 2E2IL 3S1ML 3GTJL 3I4ML 5M5XL 3S2HL 1TWCL 5C3EL 2JA5L 3GTLL 3I4NL 3PO2L 2YU9L 2WB1P 2WAQP 4A93L 3HOUL 1I6HL 1TWFL 3RZOL 5IYBL 4C2M1 1Y1WL 2Y0SP 5IYDL 3S2DL 3H0GL 1TWGL 4X6AL 5FJ8L 3GTML 3CQZL 2R93L 2B63L 3S14L 3HOVL 4A3KL 4A3GL 4A3FL 1TWHL 2R92L 4A3LL 4Y52L 4BXXL 4A3JL 3HOXL 4C3IL 5M5WL 3RZDL 3GTGL 4A3DL 2NVYL 4A3BL 2E2HL 3HOWL 4BBSL 3PO3L 3S1QL 1SFOL 3H3VM 5C4JL 1TWAL 3HOZL 5M3ML 3S1NL 5C44L 3GTKL 5C4XL 3S1RL 3HOYL 4A3IL 3M3YL 1I50L 1R9TL 4A3CL 3S15L 3S17L 5IP7L 5FLML 5IP9L 3GTQL 4C3HL 2NVTL 4BBRL 3HKZP 2JA7L 4BY7L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M5Y L;  2R7Z L;  2NVX L;  2JA8 L;  1K83 L;  2NVQ L;  4AYB P;  2JA6 L;  1Y1V L;  4BY1 L;  3GTP L;  4QIW P;  1WCM L;  4A3E L;  2E2J L;  2PMZ P;  3K7A L;  3GTO L;  3FKI L;  4C3J L;  5IYC L;  5M3F L;  1I3Q L;  4Y7N L;  3M4O L;  2VUM L;  3S16 L;  4A3M L;  2E2I L;  3S1M L;  3GTJ L;  3I4M L;  5M5X L;  3S2H L;  1TWC L;  5C3E L;  2JA5 L;  3GTL L;  3I4N L;  3PO2 L;  2YU9 L;  2WB1 P;  2WAQ P;  4A93 L;  3HOU L;  1I6H L;  1TWF L;  3RZO L;  5IYB L;  4C2M 1;  1Y1W L;  2Y0S P;  5IYD L;  3S2D L;  3H0G L;  1TWG L;  4X6A L;  5FJ8 L;  3GTM L;  3CQZ L;  2R93 L;  2B63 L;  3S14 L;  3HOV L;  4A3K L;  4A3G L;  4A3F L;  1TWH L;  2R92 L;  4A3L L;  4Y52 L;  4BXX L;  4A3J L;  3HOX L;  4C3I L;  5M5W L;  3RZD L;  3GTG L;  4A3D L;  2NVY L;  4A3B L;  2E2H L;  3HOW L;  4BBS L;  3PO3 L;  3S1Q L;  1SFO L;  3H3V M;  5C4J L;  1TWA L;  3HOZ L;  5M3M L;  3S1N L;  5C44 L;  3GTK L;  5C4X L;  3S1R L;  3HOY L;  4A3I L;  3M3Y L;  1I50 L;  1R9T L;  4A3C L;  3S15 L;  3S17 L;  5IP7 L;  5FLM L;  5IP9 L;  3GTQ L;  4C3H L;  2NVT L;  4BBR L;  3HKZ P;  2JA7 L;  4BY7 L; 
#chains in the Genus database with same CATH topology
 3SS2 A;  1R0G A;  5GAG c;  4AYB P;  4BY1 L;  3GTP L;  2KKD A;  4A3E L;  1RWD A;  4XXB B;  4RXN A;  5DM6 1;  4K9F A;  2A6E D;  1NXG A;  1T9Q A;  4JAE A;  2E2I L;  3S2H L;  1TWC L;  3H99 A;  5C3E L;  3GTL L;  3LWV B;  4A93 L;  1I6H L;  6RXN A;  3H9B A;  2ZIX A;  3H97 A;  5JVH 1;  3RZO L;  1YUZ A;  3CQZ L;  5K2M E;  4UY8 1;  1PFW A;  2PVX A;  3S14 L;  5IY0 A;  4A3K L;  4LHL A;  1NXE A;  1S2Z A;  1TWH L;  2R92 L;  1S24 A;  5M5W L;  5MF6 A;  3PKJ A;  3RZD L;  2C6B A;  1F4L A;  3GTG L;  2Z3R B;  2RFK B;  1B71 A;  1VZH A;  3ZG6 A;  4BBS L;  3PZA A;  2EY4 E;  2JI3 A;  5EIO C;  1BRF A;  2M6O A;  3H3V M;  7RXN A;  4G6B A;  2MS3 A;  1LKP A;  3GTK L;  1BE7 A;  2BE5 D;  3KYV A;  5AN9 H;  1RDG A;  3MPS A;  3HOY L;  2GMG A;  4YWM A;  4A3I L;  2JI2 A;  1I50 L;  1R9T L;  3M3Y L;  4A3C L;  3S15 L;  5GAD c;  5IP9 L;  2CR8 A;  1S30 A;  4ZN3 B;  5H1S c;  2AUS B;  1VCX A;  2AYJ A;  5AI3 A;  5M5Y L;  3LPE B;  2JA8 L;  2HVY C;  4AR6 A;  2V0F A;  3VPB E;  2NVQ L;  1Y1V L;  4QIW P;  2Z3Q B;  2PMZ P;  1YV1 A;  5MGN A;  1R0H A;  4V19 6;  3KYY A;  3FKI L;  2M4Y A;  2HR5 A;  5IYC L;  1OWC A;  1RDV A;  3JR7 A;  5M3F L;  1I3Q L;  3PL5 A;  1IU5 A;  1T9P A;  4Y7N L;  2J9U B;  3B08 B;  5GAH c;  2XJU A;  3S16 L;  3LWO B;  4A3M L;  2XJV A;  3GTJ L;  3HAX C;  5M5X L;  2A68 D;  1R0J A;  2JA5 L;  2APO B;  1FHM A;  2YU9 L;  1WJV A;  1BQ9 A;  3HJY B;  2QL0 A;  3HOU L;  2H12 A;  1DVB A;  3LWR B;  2ERS A;  4AHW A;  2Y0S P;  1CAA A;  4X6A L;  3GTM L;  5EIN C;  3A44 A;  1RYQ A;  4XGH A;  1NNQ A;  4Y52 L;  4BXX L;  3HOX L;  2PYA A;  4JAF A;  3K35 A;  1R0F A;  1IU6 A;  5JVG 1;  4A3D L;  3S1Q L;  1PFV A;  1ODH A;  3HOZ L;  5MFP A;  5M3M L;  2JI1 A;  3S1R L;  3RZ6 A;  4WFN 1;  3PWF A;  5DM7 1;  5IP7 L;  5FLM L;  3WWL A;  1PFY A;  2PSM C;  4TPU A;  1CAD A;  3P8B A;  1QCV A;  4AR5 A;  4BY7 L;  2XJS A;  3H9C A;  2R7Z L;  2NVX L;  8RXN A;  1DX8 A;  1LKM A;  1YK4 A;  2PPT A;  4C3J L;  5RXN A;  2DSX A;  3J7Z 1;  5MFZ A;  3QQC E;  4AHX A;  3M4O L;  1BQ8 A;  4JAD A;  4TVM A;  1YK5 A;  1Z92 B;  1SMU A;  3I4M L;  1B2O A;  3I4N L;  1T9O A;  3PO2 L;  2WAQ P;  3LNL A;  1OWB A;  3PIP 1;  5IYB L;  1Y1W L;  2LCQ A;  3H0G L;  1LTL A;  2R93 L;  1IRN A;  2CKA A;  2AQC A;  3FDJ A;  1FHH A;  3PKI A;  2B63 L;  4AI1 A;  2B5I D;  2L0Z A;  4A3G L;  1BFY A;  2V3B B;  4A3F L;  4A3L L;  4A3J L;  4C3I L;  4POF A;  1IRO A;  1PFU A;  2RDV A;  1H7V A;  2NVY L;  4ME3 A;  4A3B L;  2K2D A;  5GAE c;  1R0I A;  3PO3 L;  3HJW B;  1LKO A;  1QQT A;  1JYB A;  5C4J L;  4GS7 D;  1TWA L;  5MLC 3;  4LHN A;  5C44 L;  5C4X L;  3PIO 1;  3LWQ B;  3S17 L;  2NVT L;  4BBR L;  3HKZ P;  2JA7 L;  1P7P A;  3KYX A;  3KYU A;  4POG A;  1RB9 A;  3WWN B;  4AHY A;  1K83 L;  2VL6 A;  2JA6 L;  3RYG A;  1WCM L;  2E2J L;  1RYT A;  3K7A L;  3GTO L;  2XJR A;  3MSU A;  1PZX A;  2CKC A;  3KYW A;  2XJP A;  2VUM L;  4AI0 A;  2A69 D;  3S1M L;  4JAG A;  1IW7 D;  2WB1 P;  3LWP B;  2NYD A;  4AR4 A;  1TWF L;  3J7Y 1;  2M6P A;  3QVD A;  1SMM A;  4C2M 1;  3S2D L;  5IYD L;  2KN9 A;  3IU3 I;  1TWG L;  1ZRP A;  1C09 A;  1E8J A;  2ERJ A;  5FJ8 L;  2XJQ A;  3HOV L;  4AI3 A;  4ZN1 B;  4E6Y A;  3RZT A;  2PVE A;  3B0A B;  1QYB A;  1YUX A;  2M4V A;  2E2H L;  4AI2 A;  3HOW L;  2C6A A;  1SMW A;  2A6H D;  4AR3 A;  2V0E A;  1VZI A;  2XJT A;  1SFO L;  5AI2 A;  3S1N L;  3P2A A;  1VZG A;  1B13 A;  4AHZ A;  2O5J D;  1B2J A;  4YWL A;  3GTQ L;  4U67 1;  4C3H L;  3NFP I;  4B8C D;  3MQK B; 
#chains in the Genus database with same CATH homology
 5M5Y L;  2R7Z L;  2NVX L;  2JA8 L;  1K83 L;  2NVQ L;  4AYB P;  2JA6 L;  1Y1V L;  4BY1 L;  3GTP L;  4QIW P;  1WCM L;  4A3E L;  2E2J L;  2PMZ P;  3K7A L;  3GTO L;  3FKI L;  4C3J L;  5IYC L;  5M3F L;  1I3Q L;  4Y7N L;  3M4O L;  2VUM L;  3S16 L;  4A3M L;  2E2I L;  3S1M L;  3GTJ L;  3I4M L;  5M5X L;  3S2H L;  1TWC L;  5C3E L;  2JA5 L;  3GTL L;  3I4N L;  3PO2 L;  2YU9 L;  2WB1 P;  2WAQ P;  4A93 L;  3HOU L;  1I6H L;  1TWF L;  3RZO L;  5IYB L;  4C2M 1;  1Y1W L;  2Y0S P;  5IYD L;  3S2D L;  3H0G L;  1TWG L;  4X6A L;  5FJ8 L;  3GTM L;  3CQZ L;  2R93 L;  2B63 L;  3S14 L;  3HOV L;  4A3K L;  4A3G L;  4A3F L;  1TWH L;  2R92 L;  4A3L L;  4Y52 L;  4BXX L;  4A3J L;  3HOX L;  4C3I L;  5M5W L;  3RZD L;  3GTG L;  4A3D L;  2NVY L;  4A3B L;  2E2H L;  3HOW L;  4BBS L;  3PO3 L;  3S1Q L;  1SFO L;  3H3V M;  5C4J L;  1TWA L;  3HOZ L;  5M3M L;  3S1N L;  5C44 L;  3GTK L;  5C4X L;  3S1R L;  3HOY L;  4A3I L;  3M3Y L;  1I50 L;  1R9T L;  4A3C L;  3S15 L;  3S17 L;  5IP7 L;  5FLM L;  5IP9 L;  3GTQ L;  4C3H L;  2NVT L;  4BBR L;  3HKZ P;  2JA7 L;  4BY7 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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