The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
57
|
structure length |
57
|
Chain Sequence |
MPVGWQCPGCTFINKPTRPGCEMCCRARPETYQIPASYQPDEEERARLAGEEEALRQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein/metal binding protein
|
| source organism |
Homo sapiens
|
| publication title |
Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex
pubmed doi rcsb |
| molecule keywords |
Polyubiquitin-C
|
| total genus |
10
|
| structure length |
57
|
| sequence length |
57
|
| chains with identical sequence |
E
|
| ec nomenclature |
ec
2.3.2.31: RBR-type E3 ubiquitin transferase. |
| pdb deposition date | 2011-06-07 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | Rubrerythrin, domain 2 |
#chains in the Genus database with same CATH superfamily 4XXB B; 3B0A B; 3P2A A; 2PPT A; 3B08 B; 2C6B A; 2C6A A; 2J9U B; #chains in the Genus database with same CATH topology 1PFY A; 3HOW L; 1B71 A; 4A3G L; 2CKA A; 2JI1 A; 6RXN A; 3PO2 L; 2JA7 L; 3NFP I; 8RXN A; 3B08 B; 2GMG A; 2C6B A; 1S2Z A; 4A3J L; 1K83 L; 4V19 6; 1R0H A; 2WB1 P; 1B2O A; 1TWA L; 3PKJ A; 3HOX L; 3GTL L; 3GTP L; 3S1N L; 1JYB A; 3MSU A; 2H12 A; 2HVY C; 2R92 L; 1OWB A; 3LNL A; 1S30 A; 3B0A B; 4E6Y A; 5AI3 A; 5FLM L; 2RFK B; 3PIO 1; 1E8J A; 3LWO B; 2R7Z L; 3KYY A; 5MF6 A; 1T9O A; 2M6O A; 2MS3 A; 5AN9 H; 2A6H D; 3I4N L; 4AHX A; 1S24 A; 2ERS A; 1NXG A; 3JR7 A; 3S1M L; 3GTK L; 2PPT A; 1QQT A; 3LWQ B; 2V0E A; 5MFP A; 3RZD L; 4TPU A; 4Y7N L; 3MPS A; 1BQ8 A; 5M5W L; 3VPB E; 2PVE A; 1R0F A; 2NYD A; 5EIN C; 2ZIX A; 4A93 L; 2XJS A; 3ZG6 A; 5GAG c; 1Y1W L; 1CAA A; 1VZG A; 2M4Y A; 1LTL A; 5H1S c; 3S14 L; 1OWC A; 3PKI A; 2VL6 A; 4JAD A; 3KYW A; 1T9P A; 2WAQ P; 5RXN A; 1B13 A; 2HR5 A; 4YWM A; 2EY4 E; 2DSX A; 2JA5 L; 1RB9 A; 3HOY L; 3S2H L; 3FKI L; 1YUZ A; 1R9T L; 3LWP B; 1RYQ A; 3PIP 1; 1Y1V L; 5IYC L; 1RDV A; 2CKC A; 4AR3 A; 3H3V M; 4ZN3 B; 3IU3 I; 3H9C A; 1DX8 A; 3LWV B; 5GAE c; 3KYX A; 3P2A A; 4AHZ A; 1WCM L; 2E2H L; 1I3Q L; 2E2J L; 1IW7 D; 3GTJ L; 1VZI A; 4JAE A; 2M4V A; 1BE7 A; 5IY0 A; 3M4O L; 5MFZ A; 1T9Q A; 2M6P A; 3GTG L; 1ZRP A; 1R0J A; 2JA8 L; 1I50 L; 3J7Y 1; 1H7V A; 2O5J D; 2V0F A; 2KN9 A; 1LKP A; 1IU6 A; 1YK5 A; 2B5I D; 2A68 D; 2R93 L; 5K2M E; 2PMZ P; 4C3J L; 4A3F L; 3KYU A; 1FHH A; 4A3K L; 3HOU L; 2ERJ A; 4XGH A; 4AHW A; 2E2I L; 2NVY L; 5C44 L; 3MQK B; 2Y0S P; 1SMW A; 3A44 A; 1QCV A; 3HOV L; 3QVD A; 5JVH 1; 3GTM L; 2YU9 L; 5M3M L; 2B63 L; 4QIW P; 3S2D L; 2XJQ A; 5DM6 1; 2KKD A; 4RXN A; 3K35 A; 1TWG L; 5JVG 1; 1QYB A; 4BY7 L; 4A3M L; 4AR5 A; 2VUM L; 4AI3 A; 2JI3 A; 1TWH L; 1IRN A; 2Z3Q B; 5GAD c; 2J9U B; 7RXN A; 4XXB B; 3H99 A; 2A69 D; 2NVX L; 2K2D A; 4BY1 L; 5IYD L; 1I6H L; 3S15 L; 4WFN 1; 3RYG A; 3GTO L; 1R0G A; 3RZ6 A; 2C6A A; 1VZH A; 5C4X L; 3RZT A; 2A6E D; 4GS7 D; 4POF A; 3P8B A; 4A3I L; 1NXE A; 4POG A; 4ZN1 B; 2RDV A; 3PZA A; 3HJY B; 1YUX A; 3HOZ L; 3S1R L; 4AI2 A; 2XJV A; 1Z92 B; 1BFY A; 4U67 1; 1RYT A; 1P7P A; 1BQ9 A; 1TWF L; 4G6B A; 3WWN B; 4C3I L; 4Y52 L; 1R0I A; 2BE5 D; 3H97 A; 5IYB L; 1PZX A; 2XJR A; 1PFU A; 1SMU A; 5GAH c; 5C4J L; 2CR8 A; 3I4M L; 1DVB A; 4C2M 1; 3SS2 A; 4C3H L; 1WJV A; 3HKZ P; 4AI0 A; 2Z3R B; 3HAX C; 4K9F A; 3PL5 A; 1IRO A; 3M3Y L; 2XJP A; 3K7A L; 2AQC A; 3PO3 L; 1YK4 A; 2NVT L; 2XJU A; 2JA6 L; 2QL0 A; 1LKO A; 3S1Q L; 1CAD A; 3S16 L; 1SMM A; 4AR4 A; 1B2J A; 5C3E L; 1ODH A; 4A3E L; 4X6A L; 2PVX A; 4TVM A; 4BBS L; 1TWC L; 4A3L L; 1C09 A; 2V3B B; 1IU5 A; 2PYA A; 4A3C L; 5IP9 L; 3CQZ L; 2APO B; 3HJW B; 1NNQ A; 4JAF A; 4BBR L; 1FHM A; 2NVQ L; 1RDG A; 3LWR B; 3LPE B; 5M5Y L; 3RZO L; 5EIO C; 3FDJ A; 5M5X L; 1SFO L; 3PWF A; 4YWL A; 3GTQ L; 5M3F L; 3S17 L; 5FJ8 L; 1LKM A; 4JAG A; 4BXX L; 4AI1 A; 1RWD A; 4LHN A; 4A3B L; 5MLC 3; 3H0G L; 2PSM C; 4AHY A; 4AR6 A; 4LHL A; 4ME3 A; 4B8C D; 5AI2 A; 2JI2 A; 1YV1 A; 3QQC E; 2AUS B; 4AYB P; 3H9B A; 4A3D L; 3J7Z 1; 1PFV A; 2XJT A; 3WWL A; 1BRF A; 2AYJ A; 2LCQ A; 5IP7 L; 1VCX A; 3KYV A; 2L0Z A; 5MGN A; 5DM7 1; 1PFW A; 4UY8 1; 1F4L A; #chains in the Genus database with same CATH homology 2XJQ A; 1B71 A; 1YUZ A; 5DM6 1; 2XJP A; 2KKD A; 4RXN A; 3K35 A; 2CKA A; 1YK4 A; 2JI1 A; 6RXN A; 2XJU A; 5JVG 1; 1QYB A; 3NFP I; 8RXN A; 1RYQ A; 4AR5 A; 2QL0 A; 3B08 B; 2GMG A; 3PIP 1; 1LKO A; 2C6B A; 2JI3 A; 1S2Z A; 4AI3 A; 1RDV A; 2CKC A; 4V19 6; 1IRN A; 1CAD A; 1R0H A; 2Z3Q B; 4AR3 A; 1SMM A; 5GAD c; 1B2O A; 4ZN3 B; 2J9U B; 3IU3 I; 7RXN A; 4AR4 A; 3PKJ A; 4XXB B; 1B2J A; 1DX8 A; 2A69 D; 1ODH A; 5GAE c; 3KYX A; 1JYB A; 3MSU A; 2H12 A; 3P2A A; 2K2D A; 1OWB A; 3LNL A; 4AHZ A; 2PVX A; 4TVM A; 4WFN 1; 3RYG A; 1S30 A; 1C09 A; 2V3B B; 3B0A B; 1IW7 D; 4E6Y A; 1IU5 A; 5AI3 A; 2PYA A; 1VZI A; 1R0G A; 3RZ6 A; 2C6A A; 1VZH A; 4JAE A; 1NNQ A; 4JAF A; 2M4V A; 3PIO 1; 1FHM A; 3RZT A; 2A6E D; 1BE7 A; 1RDG A; 5IY0 A; 4GS7 D; 1E8J A; 4POF A; 3LPE B; 3P8B A; 1NXE A; 4POG A; 3KYY A; 5MFZ A; 1T9Q A; 5MF6 A; 5EIO C; 1T9O A; 4ZN1 B; 2RDV A; 2M6P A; 3PZA A; 2M6O A; 1ZRP A; 2MS3 A; 1YUX A; 2A6H D; 1R0J A; 5AN9 H; 3PWF A; 4YWL A; 4AHX A; 4AI2 A; 1S24 A; 1Z92 B; 1NXG A; 2ERS A; 2XJV A; 3J7Y 1; 1BFY A; 1H7V A; 2O5J D; 2V0F A; 4U67 1; 1LKM A; 2KN9 A; 1LKP A; 1IU6 A; 1RYT A; 2PPT A; 4JAG A; 1YK5 A; 2B5I D; 2A68 D; 4AI1 A; 1RWD A; 4LHN A; 1BQ9 A; 4G6B A; 5K2M E; 2V0E A; 5MLC 3; 5MFP A; 4TPU A; 3WWN B; 2PSM C; 3MPS A; 1BQ8 A; 4AHY A; 4AR6 A; 4LHL A; 3KYU A; 4ME3 A; 1R0I A; 4B8C D; 2BE5 D; 3VPB E; 1FHH A; 2PVE A; 1R0F A; 5AI2 A; 2JI2 A; 1YV1 A; 2NYD A; 5EIN C; 2XJR A; 2ZIX A; 3QQC E; 2ERJ A; 2XJS A; 1SMU A; 4XGH A; 3ZG6 A; 5GAH c; 5GAG c; 1CAA A; 1VZG A; 2CR8 A; 2M4Y A; 1DVB A; 4AHW A; 1LTL A; 5H1S c; 3J7Z 1; 1OWC A; 2XJT A; 3WWL A; 3SS2 A; 3PKI A; 1WJV A; 1BRF A; 1SMW A; 3A44 A; 2VL6 A; 1QCV A; 4JAD A; 4AI0 A; 2Z3R B; 3KYW A; 1T9P A; 3QVD A; 5JVH 1; 2AYJ A; 2LCQ A; 5RXN A; 1B13 A; 1VCX A; 2HR5 A; 3KYV A; 2L0Z A; 5MGN A; 5DM7 1; 4K9F A; 4YWM A; 1IRO A; 4UY8 1; 2DSX A; 1RB9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
