3GTML

Co-complex of backtracked rna polymerase ii with tfiis
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (31-34)Updating...
connected with : NaN
molecule tags Transcription, transferase/dna-rna hybrid
source organism Saccharomyces cerevisiae
publication title Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2009-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3gtmL00
3S16L 5IYBL 3GTOL 1SFOL 4Y52L 3GTKL 3I4NL 4AYBP 1I3QL 4A3DL 5IYDL 2YU9L 4QIWP 3PO3L 4A3ML 2WAQP 2JA5L 3GTPL 2VUML 3S1ML 2E2HL 5M5YL 5M3FL 4A3IL 3GTML 3S17L 2E2JL 2R7ZL 3S14L 4A3EL 3S1RL 3GTQL 4A93L 1TWFL 3M3YL 4A3FL 2WB1P 5M5XL 4Y7NL 4A3KL 2R93L 3HOZL 1TWCL 5M5WL 5C3EL 1Y1VL 3PO2L 1Y1WL 5IP9L 3GTLL 2E2IL 2JA7L 1K83L 3HOYL 3H3VM 2NVYL 2B63L 4C3IL 4C2M1 2R92L 5FLML 1I50L 5C44L 3K7AL 3S2DL 3GTGL 1TWGL 1R9TL 5C4JL 3S1NL 5IP7L 4A3BL 4BBRL 3RZDL 3HKZP 5M3ML 3M4OL 3S2HL 5FJ8L 3HOWL 4BBSL 3HOXL 3FKIL 3GTJL 4BY1L 4C3JL 4A3LL 2PMZP 5IYCL 4C3HL 2JA8L 2JA6L 4A3GL 4A3CL 5C4XL 1TWHL 1I6HL 1WCML 2Y0SP 1TWAL 4BXXL 4BY7L 3HOVL 3H0GL 3HOUL 4X6AL 3S1QL 4A3JL 3I4ML 2NVQL 3S15L 2NVXL 3CQZL 2NVTL 3RZOL
chains in the Genus database with same CATH superfamily
5IYBL 1NXGA 1SFOL 3PKIA 4AYBP 1R0HA 1T9QA 2CKCA 3P2AA 5IYDL 5EIOC 2QL0A 3LNLA 2JI3A 4A3ML 2JA5L 1LKOA 2VUML 3S1ML 2E2HL 5M5YL 1RYQA 4JAFA 3S1RL 2B5ID 1VZGA 3HJYB 2KN9A 3HOZL 1RB9A 3IU3I 1BQ9A 2PPTA 3GTLL 2JA7L 2PVXA 2Z3RB 5MGNA 5JVG1 2A68D 3PL5A 1CAAA 4V196 3KYVA 5C4JL 2LCQA 1RWDA 2M6OA 4BBRL 1YK4A 5M3ML 2J9UB 1BE7A 4BY1L 3LWRB 5IYCL 2RDVA 2C6BA 3H99A 1LTLA 1SMUA 2ERSA 1T9OA 1R0GA 5MLC3 2PVEA 1B2OA 3H0GL 3HOUL 4X6AL 2V3BB 1B2JA 3P8BA 1R0FA 5IY0A 1YV1A 1PFVA 3J7Z1 2M4YA 3CQZL 2M4VA 5GAHc 4YWMA 3GTOL 4Y52L 3I4NL 3RZTA 4UY81 1I3QL 1BFYA 2YU9L 1T9PA 2WAQP 5GAEc 4ZN3B 4JAEA 2XJRA 4A3IL 3GTML 3S17L 1VZHA 1RDGA 1BRFA 2E2JL 2R7ZL 1R0IA 5JVH1 1LKMA 3WWNB 1ZRPA 1PZXA 4GS7D 2WB1P 4A3KL 5C3EL 1Y1VL 2C6AA 4ZN1B 2K2DA 1LKPA 4AI3A 2NVYL 1R0JA 2B63L 4C3IL 4G6BA 4C2M1 4XXBB 1CADA 5FLML 3RYGA 4AR5A 2AUSB 1I50L 3SS2A 2CKAA 5C44L 2EY4E 3K7AL 3PKJA 1ODHA 1F4LA 1TWGL 1C09A 2HVYC 3S1NL 5IP7L 3H97A 3RZDL 3HKZP 3A44A 3M4OL 3LWPB 5FJ8L 3LWVB 4K9FA 5H1Sc 2XJTA 1PFWA 2O5JD 2A69D 4A3LL 2PMZP 2A6ED 2JA8L 2JA6L 4A3GL 4JAGA 1Z92B 7RXNA 1DX8A 1NNQA 2AQCA 1BQ8A 4AHYA 2A6HD 1S24A 3HOVL 1RDVA 2MS3A 3MSUA 4AHWA 3NFPI 1JYBA 2M6PA 3S15L 2GMGA 2XJUA 4AHZA 1IU6A 5GADc 1DVBA 5MFZA 1PFUA 3GTKL 2AYJA 1QQTA 2PYAA 3PO3L 6RXNA 5DM71 1B71A 3ZG6A 5M3FL 3HAXC 3B0AB 4JADA 1SMWA 3S14L 3FDJA 3KYXA 1YUXA 1YK5A 4A3FL 4Y7NL 1IRNA 2DSXA 1TWCL 3RZ6A 5EINC 1Y1WL 5IP9L 4AI2A 2KKDA 3HOYL 3H3VM 3QVDA 3MQKB 2R92L 4WFN1 4AR3A 2VL6A 3S2DL 1RYTA 3GTGL 4TPUA 1R9TL 2Z3QB 4B8CD 4E6YA 1IROA 3HOXL 3FKIL 3GTJL 4C3JL 5AI3A 4XGHA 2L0ZA 2HR5A 2XJSA 2XJQA 5MFPA 1TWHL 4LHNA 1WCML 4U671 2JI2A 1TWAL 2JI1A 4BXXL 1NXEA 3S1QL 1E8JA 4A3JL 3K35A 4YWLA 3H9CA 2NVQL 5AI2A 3LPEB 3JR7A 2NVTL 3S16L 4AR6A 3KYWA 8RXNA 4LHLA 1WJVA 1FHMA 4A3DL 3B08B 4QIWP 1B13A 1YUZA 3GTPL 2XJPA 1IW7D 3KYYA 1OWCA 1OWBA 2XJVA 4A3EL 2H12A 2V0FA 2BE5D 3GTQL 4A93L 1TWFL 3M3YL 1FHHA 5M5XL 2ERJA 3PIP1 2R93L 5DM61 5GAGc 3PIO1 5M5WL 2NYDA 2V0EA 4POFA 3PO2L 1S2ZA 4TVMA 4RXNA 2E2IL 1K83L 1VCXA 3PZAA 3MPSA 3QQCE 3LWOB 5AN9H 2RFKB 2ZIXA 3HJWB 1H7VA 5K2ME 3VPBE 4A3BL 4AI1A 1IU5A 3S2HL 3HOWL 4BBSL 3PWFA 4AR4A 4C3HL 1SMMA 4A3CL 5C4XL 1S30A 4AHXA 1I6HL 5MF6A 2Y0SP 2PSMC 3LWQB 1QCVA 3J7Y1 4BY7L 1P7PA 4ME3A 3WWLA 2CR8A 1QYBA 5RXNA 3I4ML 2APOB 1VZIA 3H9BA 2NVXL 3KYUA 4AI0A 1PFYA 4POGA 3RZOL
chains in the Genus database with same CATH topology
3S16L 5IYBL 3GTOL 1SFOL 4Y52L 3GTKL 3I4NL 4AYBP 1I3QL 4A3DL 5IYDL 2YU9L 4QIWP 3PO3L 4A3ML 2WAQP 2JA5L 3GTPL 2VUML 3S1ML 2E2HL 5M5YL 5M3FL 4A3IL 3GTML 3S17L 2E2JL 2R7ZL 3S14L 4A3EL 3S1RL 3GTQL 4A93L 1TWFL 3M3YL 4A3FL 2WB1P 5M5XL 4Y7NL 4A3KL 2R93L 3HOZL 1TWCL 5M5WL 5C3EL 1Y1VL 3PO2L 1Y1WL 5IP9L 3GTLL 2E2IL 2JA7L 1K83L 3HOYL 3H3VM 2NVYL 2B63L 4C3IL 4C2M1 2R92L 5FLML 1I50L 5C44L 3K7AL 3S2DL 3GTGL 1TWGL 1R9TL 5C4JL 3S1NL 5IP7L 4A3BL 4BBRL 3RZDL 3HKZP 5M3ML 3M4OL 3S2HL 5FJ8L 3HOWL 4BBSL 3HOXL 3FKIL 3GTJL 4BY1L 4C3JL 4A3LL 2PMZP 5IYCL 4C3HL 2JA8L 2JA6L 4A3GL 4A3CL 5C4XL 1TWHL 1I6HL 1WCML 2Y0SP 1TWAL 4BXXL 4BY7L 3HOVL 3H0GL 3HOUL 4X6AL 3S1QL 4A3JL 3I4ML 2NVQL 3S15L 2NVXL 3CQZL 2NVTL 3RZOL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S16 L;  5IYB L;  3GTO L;  1SFO L;  4Y52 L;  3GTK L;  3I4N L;  4AYB P;  1I3Q L;  4A3D L;  5IYD L;  2YU9 L;  4QIW P;  3PO3 L;  4A3M L;  2WAQ P;  2JA5 L;  3GTP L;  2VUM L;  3S1M L;  2E2H L;  5M5Y L;  5M3F L;  4A3I L;  3GTM L;  3S17 L;  2E2J L;  2R7Z L;  3S14 L;  4A3E L;  3S1R L;  3GTQ L;  4A93 L;  1TWF L;  3M3Y L;  4A3F L;  2WB1 P;  5M5X L;  4Y7N L;  4A3K L;  2R93 L;  3HOZ L;  1TWC L;  5M5W L;  5C3E L;  1Y1V L;  3PO2 L;  1Y1W L;  5IP9 L;  3GTL L;  2E2I L;  2JA7 L;  1K83 L;  3HOY L;  3H3V M;  2NVY L;  2B63 L;  4C3I L;  4C2M 1;  2R92 L;  5FLM L;  1I50 L;  5C44 L;  3K7A L;  3S2D L;  3GTG L;  1TWG L;  1R9T L;  5C4J L;  3S1N L;  5IP7 L;  4A3B L;  4BBR L;  3RZD L;  3HKZ P;  5M3M L;  3M4O L;  3S2H L;  5FJ8 L;  3HOW L;  4BBS L;  3HOX L;  3FKI L;  3GTJ L;  4BY1 L;  4C3J L;  4A3L L;  2PMZ P;  5IYC L;  4C3H L;  2JA8 L;  2JA6 L;  4A3G L;  4A3C L;  5C4X L;  1TWH L;  1I6H L;  1WCM L;  2Y0S P;  1TWA L;  4BXX L;  4BY7 L;  3HOV L;  3H0G L;  3HOU L;  4X6A L;  3S1Q L;  4A3J L;  3I4M L;  2NVQ L;  3S15 L;  2NVX L;  3CQZ L;  2NVT L;  3RZO L; 
#chains in the Genus database with same CATH topology
 5IYB L;  1NXG A;  1SFO L;  3PKI A;  4AYB P;  1R0H A;  1T9Q A;  2CKC A;  3P2A A;  5IYD L;  5EIO C;  2QL0 A;  3LNL A;  2JI3 A;  4A3M L;  2JA5 L;  1LKO A;  2VUM L;  3S1M L;  2E2H L;  5M5Y L;  1RYQ A;  4JAF A;  3S1R L;  2B5I D;  1VZG A;  3HJY B;  2KN9 A;  3HOZ L;  1RB9 A;  3IU3 I;  1BQ9 A;  2PPT A;  3GTL L;  2JA7 L;  2PVX A;  2Z3R B;  5MGN A;  5JVG 1;  2A68 D;  3PL5 A;  1CAA A;  4V19 6;  3KYV A;  5C4J L;  2LCQ A;  1RWD A;  2M6O A;  4BBR L;  1YK4 A;  5M3M L;  2J9U B;  1BE7 A;  4BY1 L;  3LWR B;  5IYC L;  2RDV A;  2C6B A;  3H99 A;  1LTL A;  1SMU A;  2ERS A;  1T9O A;  1R0G A;  5MLC 3;  2PVE A;  1B2O A;  3H0G L;  3HOU L;  4X6A L;  2V3B B;  1B2J A;  3P8B A;  1R0F A;  5IY0 A;  1YV1 A;  1PFV A;  3J7Z 1;  2M4Y A;  3CQZ L;  2M4V A;  5GAH c;  4YWM A;  3GTO L;  4Y52 L;  3I4N L;  3RZT A;  4UY8 1;  1I3Q L;  1BFY A;  2YU9 L;  1T9P A;  2WAQ P;  5GAE c;  4ZN3 B;  4JAE A;  2XJR A;  4A3I L;  3GTM L;  3S17 L;  1VZH A;  1RDG A;  1BRF A;  2E2J L;  2R7Z L;  1R0I A;  5JVH 1;  1LKM A;  3WWN B;  1ZRP A;  1PZX A;  4GS7 D;  2WB1 P;  4A3K L;  5C3E L;  1Y1V L;  2C6A A;  4ZN1 B;  2K2D A;  1LKP A;  4AI3 A;  2NVY L;  1R0J A;  2B63 L;  4C3I L;  4G6B A;  4C2M 1;  4XXB B;  1CAD A;  5FLM L;  3RYG A;  4AR5 A;  2AUS B;  1I50 L;  3SS2 A;  2CKA A;  5C44 L;  2EY4 E;  3K7A L;  3PKJ A;  1ODH A;  1F4L A;  1TWG L;  1C09 A;  2HVY C;  3S1N L;  5IP7 L;  3H97 A;  3RZD L;  3HKZ P;  3A44 A;  3M4O L;  3LWP B;  5FJ8 L;  3LWV B;  4K9F A;  5H1S c;  2XJT A;  1PFW A;  2O5J D;  2A69 D;  4A3L L;  2PMZ P;  2A6E D;  2JA8 L;  2JA6 L;  4A3G L;  4JAG A;  1Z92 B;  7RXN A;  1DX8 A;  1NNQ A;  2AQC A;  1BQ8 A;  4AHY A;  2A6H D;  1S24 A;  3HOV L;  1RDV A;  2MS3 A;  3MSU A;  4AHW A;  3NFP I;  1JYB A;  2M6P A;  3S15 L;  2GMG A;  2XJU A;  4AHZ A;  1IU6 A;  5GAD c;  1DVB A;  5MFZ A;  1PFU A;  3GTK L;  2AYJ A;  1QQT A;  2PYA A;  3PO3 L;  6RXN A;  5DM7 1;  1B71 A;  3ZG6 A;  5M3F L;  3HAX C;  3B0A B;  4JAD A;  1SMW A;  3S14 L;  3FDJ A;  3KYX A;  1YUX A;  1YK5 A;  4A3F L;  4Y7N L;  1IRN A;  2DSX A;  1TWC L;  3RZ6 A;  5EIN C;  1Y1W L;  5IP9 L;  4AI2 A;  2KKD A;  3HOY L;  3H3V M;  3QVD A;  3MQK B;  2R92 L;  4WFN 1;  4AR3 A;  2VL6 A;  3S2D L;  1RYT A;  3GTG L;  4TPU A;  1R9T L;  2Z3Q B;  4B8C D;  4E6Y A;  1IRO A;  3HOX L;  3FKI L;  3GTJ L;  4C3J L;  5AI3 A;  4XGH A;  2L0Z A;  2HR5 A;  2XJS A;  2XJQ A;  5MFP A;  1TWH L;  4LHN A;  1WCM L;  4U67 1;  2JI2 A;  1TWA L;  2JI1 A;  4BXX L;  1NXE A;  3S1Q L;  1E8J A;  4A3J L;  3K35 A;  4YWL A;  3H9C A;  2NVQ L;  5AI2 A;  3LPE B;  3JR7 A;  2NVT L;  3S16 L;  4AR6 A;  3KYW A;  8RXN A;  4LHL A;  1WJV A;  1FHM A;  4A3D L;  3B08 B;  4QIW P;  1B13 A;  1YUZ A;  3GTP L;  2XJP A;  1IW7 D;  3KYY A;  1OWC A;  1OWB A;  2XJV A;  4A3E L;  2H12 A;  2V0F A;  2BE5 D;  3GTQ L;  4A93 L;  1TWF L;  3M3Y L;  1FHH A;  5M5X L;  2ERJ A;  3PIP 1;  2R93 L;  5DM6 1;  5GAG c;  3PIO 1;  5M5W L;  2NYD A;  2V0E A;  4POF A;  3PO2 L;  1S2Z A;  4TVM A;  4RXN A;  2E2I L;  1K83 L;  1VCX A;  3PZA A;  3MPS A;  3QQC E;  3LWO B;  5AN9 H;  2RFK B;  2ZIX A;  3HJW B;  1H7V A;  5K2M E;  3VPB E;  4A3B L;  4AI1 A;  1IU5 A;  3S2H L;  3HOW L;  4BBS L;  3PWF A;  4AR4 A;  4C3H L;  1SMM A;  4A3C L;  5C4X L;  1S30 A;  4AHX A;  1I6H L;  5MF6 A;  2Y0S P;  2PSM C;  3LWQ B;  1QCV A;  3J7Y 1;  4BY7 L;  1P7P A;  4ME3 A;  3WWL A;  2CR8 A;  1QYB A;  5RXN A;  3I4M L;  2APO B;  1VZI A;  3H9B A;  2NVX L;  3KYU A;  4AI0 A;  1PFY A;  4POG A;  3RZO L; 
#chains in the Genus database with same CATH homology
 3S16 L;  5IYB L;  3GTO L;  1SFO L;  4Y52 L;  3GTK L;  3I4N L;  4AYB P;  1I3Q L;  4A3D L;  5IYD L;  2YU9 L;  4QIW P;  3PO3 L;  4A3M L;  2WAQ P;  2JA5 L;  3GTP L;  2VUM L;  3S1M L;  2E2H L;  5M5Y L;  5M3F L;  4A3I L;  3GTM L;  3S17 L;  2E2J L;  2R7Z L;  3S14 L;  4A3E L;  3S1R L;  3GTQ L;  4A93 L;  1TWF L;  3M3Y L;  4A3F L;  2WB1 P;  5M5X L;  4Y7N L;  4A3K L;  2R93 L;  3HOZ L;  1TWC L;  5M5W L;  5C3E L;  1Y1V L;  3PO2 L;  1Y1W L;  5IP9 L;  3GTL L;  2E2I L;  2JA7 L;  1K83 L;  3HOY L;  3H3V M;  2NVY L;  2B63 L;  4C3I L;  4C2M 1;  2R92 L;  5FLM L;  1I50 L;  5C44 L;  3K7A L;  3S2D L;  3GTG L;  1TWG L;  1R9T L;  5C4J L;  3S1N L;  5IP7 L;  4A3B L;  4BBR L;  3RZD L;  3HKZ P;  5M3M L;  3M4O L;  3S2H L;  5FJ8 L;  3HOW L;  4BBS L;  3HOX L;  3FKI L;  3GTJ L;  4BY1 L;  4C3J L;  4A3L L;  2PMZ P;  5IYC L;  4C3H L;  2JA8 L;  2JA6 L;  4A3G L;  4A3C L;  5C4X L;  1TWH L;  1I6H L;  1WCM L;  2Y0S P;  1TWA L;  4BXX L;  4BY7 L;  3HOV L;  3H0G L;  3HOU L;  4X6A L;  3S1Q L;  4A3J L;  3I4M L;  2NVQ L;  3S15 L;  2NVX L;  3CQZ L;  2NVT L;  3RZO L; 
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