3RZ6A

Neutron structure of perdeuterated rubredoxin using 40 hours 1st pass data
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
51
structure length
51
Chain Sequence
AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Rapid visualization of hydrogen positions in protein neutron crystallographic structures.
pubmed doi rcsb
molecule tags Electron transport
source organism Pyrococcus furiosus
molecule keywords Rubredoxin
total genus 11
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2011-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3rz6A00
1T9PA 3KYWA 5AI3A 8RXNA 1FHMA 1BRFA 4AR5A 1B2JA 2M4YA 3KYUA 1S30A 1C09A 4RXNA 5AI2A 3KYXA 2GMGA 3A44A 1IU5A 2V3BB 1R0JA 1RWDA 4ME3A 1NNQA 2VL6A 1ZRPA 1BFYA 1DVBA 2HR5A 1IROA 2KN9A 3RZTA 1IRNA 3KYYA 1SMWA 1LKOA 1SMMA 1JYBA 1LKMA 1QCVA 1YK5A 2DSXA 4K9FA 3PZAA 2MS3A 1VCXA 1CAAA 1LKPA 2QL0A 6RXNA 2KKDA 1LTLA 2PVXA 1E8JA 1RYTA 1T9QA 1YUXA 5RXNA 2LCQA 1BQ9A 3PWFA 1RDGA 1RB9A 1SMUA 1H7VA 7RXNA 1BQ8A 2PYAA 3MPSA 4POGA 1BE7A 3RYGA 2RDVA 1YK4A 3KYVA 1R0HA 3QVDA 1R0IA 4AR3A 1CADA 1DX8A 1RDVA 1IU6A 4YWMA 4AR6A 4POFA 4AR4A 1YV1A 1QYBA 1R0FA 1YUZA 1B71A 5IY0A 1FHHA 1S24A 1B13A 2K2DA 4YWLA 1R0GA 1S2ZA 4TPUA 1T9OA 3SS2A 1B2OA 2PVEA 3RZ6A
chains in the Genus database with same CATH superfamily
3J7Z1 1T9PA 4C3IL 5AI3A 2APOB 1PZXA 4WFN1 2M4YA 1C09A 2L0ZA 3HAXC 3M4OL 1IW7D 2CKCA 4C3HL 2PPTA 4ME3A 2JI1A 1TWFL 3S1ML 3RZTA 3KYYA 5FJ8L 1LKOA 1SMMA 1JYBA 4AHYA 5DM61 3S1RL 2DSXA 3ZG6A 3M3YL 4K9FA 5MGNA 2WB1P 1RYTA 4V196 2RFKB 4XXBB 1NXEA 3LWVB 2A6HD 1P7PA 1TWHL 4B8CD 5JVG1 3S2DL 2Z3QB 4E6YA 3PWFA 3S1QL 2H12A 1TWAL 2JA5L 4A93L 1K83L 1H7VA 1QQTA 1VZHA 5C44L 2HVYC 2PYAA 4POGA 1BE7A 1OWCA 2XJUA 3HOXL 1R0IA 5M5YL 3HOYL 1DX8A 4AHXA 2R92L 1RDVA 3H3VM 4X6AL 3GTOL 5GAHc 1R0FA 1YUZA 2AQCA 3H9BA 1B13A 2K2DA 1Z92B 3HOVL 1T9OA 1B2OA 2Y0SP 3RZ6A 2EY4E 4JAFA 1NXGA 3KYWA 4A3LL 2YU9L 5MF6A 1B2JA 3P8BA 1S30A 2ERSA 5AI2A 2GMGA 3A44A 4ZN1B 3HOWL 2V3BB 1R0JA 2CKAA 4C2M1 3HJWB 3I4NL 5H1Sc 3NFPI 1ZRPA 1DVBA 2HR5A 1IROA 2JA6L 4AI1A 2E2HL 2ERJA 1VZGA 2NVXL 3S16L 1LKMA 3B0AB 1YK5A 3WWNB 1VCXA 3GTLL 1I3QL 2AUSB 1CAAA 2B5ID 1WJVA 6RXNA 2KKDA 1LTLA 2PVXA 4A3FL 4A3DL 4A3ML 3B08B 4Y52L 5IP9L 4AHWA 2NVQL 3H99A 5EINC 1RDGA 3H97A 3PL5A 4C3JL 5M5XL 2C6BA 4JADA 2XJSA 2B63L 2ZIXA 1WCML 2E2IL 3MPSA 3RYGA 5C3EL 2RDVA 3PKJA 1R0HA 4AR3A 5AN9H 1CADA 2C6AA 4G6BA 4BBSL 2JI3A 4AHZA 3GTGL 3S2HL 3S14L 1RYQA 1YV1A 4AI2A 4A3CL 1Y1WL 1FHHA 3IU3I 4YWLA 1S2ZA 2XJTA 5MFZA 3LWRB 3JR7A 3PO2L 1FHMA 3S17L 1BRFA 3LWQB 1SFOL 4Y7NL 1PFWA 3KYXA 5K2ME 2M6PA 2PMZP 3VPBE 4A3GL 2E2JL 3FKIL 1NNQA 3H0GL 2AYJA 1BFYA 1TWGL 4TVMA 2KN9A 1PFVA 1IRNA 2BE5D 5C4XL 4GS7D 5IYCL 2NVYL 2MS3A 2J9UB 5EIOC 5MLC3 1LKPA 5M5WL 3CQZL 1E8JA 3H9CA 1PFUA 1YUXA 2JA7L 3PO3L 2A68D 5RXNA 2JI2A 2LCQA 3HJYB 1BQ9A 2XJPA 4UY81 4A3BL 1RB9A 3LNLA 7RXNA 1ODHA 4XGHA 2CR8A 3GTKL 1I50L 3QVDA 4A3IL 3GTML 3GTQL 4LHNA 5IYBL 1I6HL 1IU6A 4YWMA 3MQKB 1QYBA 5M3FL 3GTPL 1Y1VL 3I4ML 1B71A 3GTJL 2NVTL 2M6OA 1R0GA 2M4VA 2Z3RB 3SS2A 2R7ZL 2PVEA 4JAEA 3HOZL 8RXNA 2PSMC 4AR5A 3KYUA 4LHLA 5FLML 3LPEB 2R93L 4RXNA 1IU5A 5DM71 1RWDA 2VL6A 3MSUA 4AYBP 5GAEc 2XJQA 4AI3A 2A6ED 5IYDL 3RZDL 1SMWA 2XJRA 4BY1L 4A3KL 1QCVA 3PZAA 4BBRL 2WAQP 5C4JL 1TWCL 2V0EA 2QL0A 3P2AA 5GAGc 3LWOB 1T9QA 3QQCE 2A69D 4QIWP 3PKIA 2NYDA 4A3EL 4U671 5JVH1 2V0FA 2JA8L 4ZN3B 4AI0A 3S15L 1SMUA 4JAGA 1BQ8A 2XJVA 4BY7L 3K7AL 1VZIA 1OWBA 2O5JD 1YK4A 1F4LA 3KYVA 1PFYA 3FDJA 3LWPB 5MFPA 3K35A 3RZOL 5M3ML 3WWLA 4AR6A 4POFA 3HKZP 5IP7L 3HOUL 4AR4A 3J7Y1 4BXXL 5IY0A 1R9TL 1S24A 3PIP1 3PIO1 5GADc 4TPUA 2VUML 4A3JL 3S1NL
chains in the Genus database with same CATH topology
4JAFA 3J7Z1 1NXGA 1T9PA 3KYWA 5AI3A 8RXNA 1FHMA 5MF6A 1BRFA 2PSMC 4AR5A 4WFN1 1B2JA 2M4YA 3KYUA 1S30A 3P8BA 4LHLA 1C09A 2ERSA 2L0ZA 3LPEB 4RXNA 5AI2A 3KYXA 2GMGA 3A44A 1IU5A 4ZN1B 5K2ME 2M6PA 2V3BB 1R0JA 3VPBE 1IW7D 2CKAA 5DM71 2CKCA 1RWDA 2PPTA 4ME3A 5H1Sc 1NNQA 3NFPI 2VL6A 2JI1A 3MSUA 1ZRPA 2AYJA 3PIO1 1BFYA 1DVBA 5GAEc 2HR5A 1IROA 2XJQA 4TVMA 2KN9A 4AI1A 3RZTA 1IRNA 2ERJA 1VZGA 2A6ED 4AI3A 3KYYA 1SMWA 1LKOA 1SMMA 2XJRA 1JYBA 2BE5D 1LKMA 3B0AB 4AHYA 1QCVA 1YK5A 5DM61 4GS7D 2DSXA 3WWNB 3ZG6A 4K9FA 3PZAA 2MS3A 1VCXA 5MGNA 2J9UB 5EIOC 2V0EA 5MLC3 1CAAA 1LKPA 2B5ID 2QL0A 1WJVA 6RXNA 2KKDA 1LTLA 2PVXA 3P2AA 1E8JA 5GAGc 1RYTA 1T9QA 1YUXA 3QQCE 4V196 4XXBB 2A69D 3B08B 1NXEA 2A6HD 3PKIA 2NYDA 4U671 2A68D 4AHWA 5RXNA 4B8CD 5JVG1 2JI2A 5JVH1 2V0FA 2LCQA 2Z3QB 4E6YA 1BQ9A 3PWFA 5EINC 2XJPA 2H12A 4UY81 1RDGA 4ZN3B 4AI0A 1RB9A 1SMUA 3LNLA 7RXNA 1H7VA 2C6BA 4JADA 1VZHA 1ODHA 2XJSA 2CR8A 4XGHA 2ZIXA 4JAGA 1BQ8A 2XJVA 2PYAA 3MPSA 1VZIA 4POGA 1BE7A 3RYGA 1OWCA 1OWBA 2O5JD 2RDVA 2XJUA 1YK4A 3KYVA 3PKJA 1R0HA 3QVDA 1R0IA 4AR3A 5AN9H 1CADA 2C6AA 4G6BA 1DX8A 5MFPA 4AHXA 3K35A 4LHNA 1RDVA 2JI3A 4AHZA 3WWLA 1IU6A 4YWMA 4AR6A 4POFA 1RYQA 4AR4A 1YV1A 5GAHc 4AI2A 3J7Y1 1QYBA 1R0FA 1YUZA 1B71A 5IY0A 1FHHA 1S24A 1B13A 2K2DA 3IU3I 2M6OA 4YWLA 3PIP1 1R0GA 1Z92B 2M4VA 1S2ZA 2Z3RB 4TPUA 1T9OA 3SS2A 5GADc 1B2OA 2XJTA 5MFZA 2PVEA 4JAEA 3RZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T9P A;  3KYW A;  5AI3 A;  8RXN A;  1FHM A;  1BRF A;  4AR5 A;  1B2J A;  2M4Y A;  3KYU A;  1S30 A;  1C09 A;  4RXN A;  5AI2 A;  3KYX A;  2GMG A;  3A44 A;  1IU5 A;  2V3B B;  1R0J A;  1RWD A;  4ME3 A;  1NNQ A;  2VL6 A;  1ZRP A;  1BFY A;  1DVB A;  2HR5 A;  1IRO A;  2KN9 A;  3RZT A;  1IRN A;  3KYY A;  1SMW A;  1LKO A;  1SMM A;  1JYB A;  1LKM A;  1QCV A;  1YK5 A;  2DSX A;  4K9F A;  3PZA A;  2MS3 A;  1VCX A;  1CAA A;  1LKP A;  2QL0 A;  6RXN A;  2KKD A;  1LTL A;  2PVX A;  1E8J A;  1RYT A;  1T9Q A;  1YUX A;  5RXN A;  2LCQ A;  1BQ9 A;  3PWF A;  1RDG A;  1RB9 A;  1SMU A;  1H7V A;  7RXN A;  1BQ8 A;  2PYA A;  3MPS A;  4POG A;  1BE7 A;  3RYG A;  2RDV A;  1YK4 A;  3KYV A;  1R0H A;  3QVD A;  1R0I A;  4AR3 A;  1CAD A;  1DX8 A;  1RDV A;  1IU6 A;  4YWM A;  4AR6 A;  4POF A;  4AR4 A;  1YV1 A;  1QYB A;  1R0F A;  1YUZ A;  1B71 A;  5IY0 A;  1FHH A;  1S24 A;  1B13 A;  2K2D A;  4YWL A;  1R0G A;  1S2Z A;  4TPU A;  1T9O A;  3SS2 A;  1B2O A;  2PVE A;  3RZ6 A; 
#chains in the Genus database with same CATH topology
 3J7Z 1;  1T9P A;  4C3I L;  5AI3 A;  2APO B;  1PZX A;  4WFN 1;  2M4Y A;  1C09 A;  2L0Z A;  3HAX C;  3M4O L;  1IW7 D;  2CKC A;  4C3H L;  2PPT A;  4ME3 A;  2JI1 A;  1TWF L;  3S1M L;  3RZT A;  3KYY A;  5FJ8 L;  1LKO A;  1SMM A;  1JYB A;  4AHY A;  5DM6 1;  3S1R L;  2DSX A;  3ZG6 A;  3M3Y L;  4K9F A;  5MGN A;  2WB1 P;  1RYT A;  4V19 6;  2RFK B;  4XXB B;  1NXE A;  3LWV B;  2A6H D;  1P7P A;  1TWH L;  4B8C D;  5JVG 1;  3S2D L;  2Z3Q B;  4E6Y A;  3PWF A;  3S1Q L;  2H12 A;  1TWA L;  2JA5 L;  4A93 L;  1K83 L;  1H7V A;  1QQT A;  1VZH A;  5C44 L;  2HVY C;  2PYA A;  4POG A;  1BE7 A;  1OWC A;  2XJU A;  3HOX L;  1R0I A;  5M5Y L;  3HOY L;  1DX8 A;  4AHX A;  2R92 L;  1RDV A;  3H3V M;  4X6A L;  3GTO L;  5GAH c;  1R0F A;  1YUZ A;  2AQC A;  3H9B A;  1B13 A;  2K2D A;  1Z92 B;  3HOV L;  1T9O A;  1B2O A;  2Y0S P;  3RZ6 A;  2EY4 E;  4JAF A;  1NXG A;  3KYW A;  4A3L L;  2YU9 L;  5MF6 A;  1B2J A;  3P8B A;  1S30 A;  2ERS A;  5AI2 A;  2GMG A;  3A44 A;  4ZN1 B;  3HOW L;  2V3B B;  1R0J A;  2CKA A;  4C2M 1;  3HJW B;  3I4N L;  5H1S c;  3NFP I;  1ZRP A;  1DVB A;  2HR5 A;  1IRO A;  2JA6 L;  4AI1 A;  2E2H L;  2ERJ A;  1VZG A;  2NVX L;  3S16 L;  1LKM A;  3B0A B;  1YK5 A;  3WWN B;  1VCX A;  3GTL L;  1I3Q L;  2AUS B;  1CAA A;  2B5I D;  1WJV A;  6RXN A;  2KKD A;  1LTL A;  2PVX A;  4A3F L;  4A3D L;  4A3M L;  3B08 B;  4Y52 L;  5IP9 L;  4AHW A;  2NVQ L;  3H99 A;  5EIN C;  1RDG A;  3H97 A;  3PL5 A;  4C3J L;  5M5X L;  2C6B A;  4JAD A;  2XJS A;  2B63 L;  2ZIX A;  1WCM L;  2E2I L;  3MPS A;  3RYG A;  5C3E L;  2RDV A;  3PKJ A;  1R0H A;  4AR3 A;  5AN9 H;  1CAD A;  2C6A A;  4G6B A;  4BBS L;  2JI3 A;  4AHZ A;  3GTG L;  3S2H L;  3S14 L;  1RYQ A;  1YV1 A;  4AI2 A;  4A3C L;  1Y1W L;  1FHH A;  3IU3 I;  4YWL A;  1S2Z A;  2XJT A;  5MFZ A;  3LWR B;  3JR7 A;  3PO2 L;  1FHM A;  3S17 L;  1BRF A;  3LWQ B;  1SFO L;  4Y7N L;  1PFW A;  3KYX A;  5K2M E;  2M6P A;  2PMZ P;  3VPB E;  4A3G L;  2E2J L;  3FKI L;  1NNQ A;  3H0G L;  2AYJ A;  1BFY A;  1TWG L;  4TVM A;  2KN9 A;  1PFV A;  1IRN A;  2BE5 D;  5C4X L;  4GS7 D;  5IYC L;  2NVY L;  2MS3 A;  2J9U B;  5EIO C;  5MLC 3;  1LKP A;  5M5W L;  3CQZ L;  1E8J A;  3H9C A;  1PFU A;  1YUX A;  2JA7 L;  3PO3 L;  2A68 D;  5RXN A;  2JI2 A;  2LCQ A;  3HJY B;  1BQ9 A;  2XJP A;  4UY8 1;  4A3B L;  1RB9 A;  3LNL A;  7RXN A;  1ODH A;  4XGH A;  2CR8 A;  3GTK L;  1I50 L;  3QVD A;  4A3I L;  3GTM L;  3GTQ L;  4LHN A;  5IYB L;  1I6H L;  1IU6 A;  4YWM A;  3MQK B;  1QYB A;  5M3F L;  3GTP L;  1Y1V L;  3I4M L;  1B71 A;  3GTJ L;  2NVT L;  2M6O A;  1R0G A;  2M4V A;  2Z3R B;  3SS2 A;  2R7Z L;  2PVE A;  4JAE A;  3HOZ L;  8RXN A;  2PSM C;  4AR5 A;  3KYU A;  4LHL A;  5FLM L;  3LPE B;  2R93 L;  4RXN A;  1IU5 A;  5DM7 1;  1RWD A;  2VL6 A;  3MSU A;  4AYB P;  5GAE c;  2XJQ A;  4AI3 A;  2A6E D;  5IYD L;  3RZD L;  1SMW A;  2XJR A;  4BY1 L;  4A3K L;  1QCV A;  3PZA A;  4BBR L;  2WAQ P;  5C4J L;  1TWC L;  2V0E A;  2QL0 A;  3P2A A;  5GAG c;  3LWO B;  1T9Q A;  3QQC E;  2A69 D;  4QIW P;  3PKI A;  2NYD A;  4A3E L;  4U67 1;  5JVH 1;  2V0F A;  2JA8 L;  4ZN3 B;  4AI0 A;  3S15 L;  1SMU A;  4JAG A;  1BQ8 A;  2XJV A;  4BY7 L;  3K7A L;  1VZI A;  1OWB A;  2O5J D;  1YK4 A;  1F4L A;  3KYV A;  1PFY A;  3FDJ A;  3LWP B;  5MFP A;  3K35 A;  3RZO L;  5M3M L;  3WWL A;  4AR6 A;  4POF A;  3HKZ P;  5IP7 L;  3HOU L;  4AR4 A;  3J7Y 1;  4BXX L;  5IY0 A;  1R9T L;  1S24 A;  3PIP 1;  3PIO 1;  5GAD c;  4TPU A;  2VUM L;  4A3J L;  3S1N L; 
#chains in the Genus database with same CATH homology
 4JAF A;  3J7Z 1;  1NXG A;  1T9P A;  3KYW A;  5AI3 A;  8RXN A;  1FHM A;  5MF6 A;  1BRF A;  2PSM C;  4AR5 A;  4WFN 1;  1B2J A;  2M4Y A;  3KYU A;  1S30 A;  3P8B A;  4LHL A;  1C09 A;  2ERS A;  2L0Z A;  3LPE B;  4RXN A;  5AI2 A;  3KYX A;  2GMG A;  3A44 A;  1IU5 A;  4ZN1 B;  5K2M E;  2M6P A;  2V3B B;  1R0J A;  3VPB E;  1IW7 D;  2CKA A;  5DM7 1;  2CKC A;  1RWD A;  2PPT A;  4ME3 A;  5H1S c;  1NNQ A;  3NFP I;  2VL6 A;  2JI1 A;  3MSU A;  1ZRP A;  2AYJ A;  3PIO 1;  1BFY A;  1DVB A;  5GAE c;  2HR5 A;  1IRO A;  2XJQ A;  4TVM A;  2KN9 A;  4AI1 A;  3RZT A;  1IRN A;  2ERJ A;  1VZG A;  2A6E D;  4AI3 A;  3KYY A;  1SMW A;  1LKO A;  1SMM A;  2XJR A;  1JYB A;  2BE5 D;  1LKM A;  3B0A B;  4AHY A;  1QCV A;  1YK5 A;  5DM6 1;  4GS7 D;  2DSX A;  3WWN B;  3ZG6 A;  4K9F A;  3PZA A;  2MS3 A;  1VCX A;  5MGN A;  2J9U B;  5EIO C;  2V0E A;  5MLC 3;  1CAA A;  1LKP A;  2B5I D;  2QL0 A;  1WJV A;  6RXN A;  2KKD A;  1LTL A;  2PVX A;  3P2A A;  1E8J A;  5GAG c;  1RYT A;  1T9Q A;  1YUX A;  3QQC E;  4V19 6;  4XXB B;  2A69 D;  3B08 B;  1NXE A;  2A6H D;  3PKI A;  2NYD A;  4U67 1;  2A68 D;  4AHW A;  5RXN A;  4B8C D;  5JVG 1;  2JI2 A;  5JVH 1;  2V0F A;  2LCQ A;  2Z3Q B;  4E6Y A;  1BQ9 A;  3PWF A;  5EIN C;  2XJP A;  2H12 A;  4UY8 1;  1RDG A;  4ZN3 B;  4AI0 A;  1RB9 A;  1SMU A;  3LNL A;  7RXN A;  1H7V A;  2C6B A;  4JAD A;  1VZH A;  1ODH A;  2XJS A;  2CR8 A;  4XGH A;  2ZIX A;  4JAG A;  1BQ8 A;  2XJV A;  2PYA A;  3MPS A;  1VZI A;  4POG A;  1BE7 A;  3RYG A;  1OWC A;  1OWB A;  2O5J D;  2RDV A;  2XJU A;  1YK4 A;  3KYV A;  3PKJ A;  1R0H A;  3QVD A;  1R0I A;  4AR3 A;  5AN9 H;  1CAD A;  2C6A A;  4G6B A;  1DX8 A;  5MFP A;  4AHX A;  3K35 A;  4LHN A;  1RDV A;  2JI3 A;  4AHZ A;  3WWL A;  1IU6 A;  4YWM A;  4AR6 A;  4POF A;  1RYQ A;  4AR4 A;  1YV1 A;  5GAH c;  4AI2 A;  3J7Y 1;  1QYB A;  1R0F A;  1YUZ A;  1B71 A;  5IY0 A;  1FHH A;  1S24 A;  1B13 A;  2K2D A;  3IU3 I;  2M6O A;  4YWL A;  3PIP 1;  1R0G A;  1Z92 B;  2M4V A;  1S2Z A;  2Z3R B;  4TPU A;  1T9O A;  3SS2 A;  5GAD c;  1B2O A;  2XJT A;  5MFZ A;  2PVE A;  4JAE A;  3RZ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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