3M3YL

Rna polymerase ii elongation complex c
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
molecule tags Transferase/dna-rna hybrid
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2010-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3m3yL00
4Y52L 3S2DL 3GTOL 2NVQL 2WB1P 4Y7NL 2VUML 4A3IL 3GTLL 1TWFL 5M5XL 3K7AL 3S1QL 3HOUL 3PO2L 5IYDL 4BY7L 2NVXL 2JA6L 3PO3L 5C3EL 3GTJL 3M4OL 3GTML 3GTPL 4A3FL 3H3VM 2NVYL 3S1RL 3GTGL 3H0GL 4C3IL 4X6AL 3HOVL 3S16L 4A3BL 2JA7L 3RZOL 2R7ZL 5M5YL 4A3GL 2R93L 1TWAL 2B63L 2PMZP 1TWGL 1I6HL 3GTKL 3S17L 3HOZL 5FJ8L 2E2IL 2JA8L 1WCML 4BY1L 3M3YL 3HOYL 1TWHL 1K83L 5IYCL 5M3FL 3S1ML 2E2HL 2Y0SP 4C2M1 4BBRL 5M3ML 5C44L 3I4ML 3HOWL 1R9TL 1I3QL 1SFOL 3CQZL 4C3JL 2YU9L 5C4XL 1I50L 4A3EL 4QIWP 4A3JL 3HKZP 4A3ML 5C4JL 5M5WL 5IYBL 2NVTL 3S15L 1Y1VL 4A93L 3S2HL 4A3CL 5IP7L 3GTQL 4AYBP 4BXXL 5IP9L 2WAQP 2R92L 4C3HL 2JA5L 3S1NL 4BBSL 3S14L 3HOXL 4A3DL 1TWCL 3I4NL 5FLML 4A3LL 2E2JL 3FKIL 3RZDL 1Y1WL 4A3KL
chains in the Genus database with same CATH superfamily
4Y52L 1LKPA 3GTOL 4AR5A 2AUSB 1IRNA 5M5XL 3K7AL 3S1QL 3HOUL 2AYJA 1LKOA 2PSMC 4A3FL 3LWRB 4TPUA 3PZAA 2JI2A 5MF6A 2KN9A 4GS7D 3H0GL 2L0ZA 3HOVL 1JYBA 1R0IA 4A3GL 2R93L 2CR8A 1C09A 2PMZP 3H97A 5K2ME 3LWPB 3A44A 2J9UB 2GMGA 1B2OA 1PFWA 4B8CD 5AN9H 3H9CA 2CKCA 3B0AB 2XJPA 2Y0SP 2V0FA 1BRFA 3SS2A 1I3QL 1SFOL 3CQZL 3RZ6A 4A3ML 5C4JL 3S15L 3MSUA 3S2HL 4AI1A 1QQTA 1VZHA 2A68D 3H99A 2Z3RB 2RDVA 2JA5L 4ME3A 3I4NL 2EY4E 2AQCA 3H9BA 3WWLA 1Y1WL 3PIP1 2ERSA 3S2DL 2VUML 4AI3A 3GTLL 4AHZA 5JVG1 5JVH1 1R0GA 2NVXL 2JA6L 3PO3L 4AI2A 2ERJA 2NVYL 3RYGA 3GTGL 1Z92B 4XXBB 1T9QA 2ZIXA 1PZXA 1S24A 2XJQA 3PIO1 2JI1A 2Z3QB 1BQ8A 4E6YA 5M5YL 1YV1A 5AI2A 1TWAL 2M4VA 4AR6A 4POGA 5MFPA 4G6BA 1B71A 3MPSA 4AHYA 3S17L 3HOZL 3LNLA 3PKJA 2PYAA 2XJSA 2JA8L 1VZGA 4BY1L 5AI3A 1TWHL 1T9OA 5M3FL 5GAGc 2NYDA 2JI3A 2PPTA 4C2M1 2M6PA 4BBRL 1H7VA 1B13A 3HOWL 1R9TL 3HJYB 2YU9L 5C4XL 3KYVA 4QIWP 1PFVA 1LTLA 1RB9A 1RYTA 4JADA 5RXNA 1VCXA 3LPEB 4A3CL 4AYBP 1R0HA 2WAQP 1T9PA 4AHWA 2C6AA 3S1NL 5GAHc 1YK5A 1TWCL 5FLML 3FKIL 3NFPI 3HJWB 1BE7A 3LWVB 2NVQL 2WB1P 4Y7NL 3J7Z1 5GADc 4A3IL 1RDGA 1TWFL 1DX8A 3PO2L 5IYDL 1QYBA 2DSXA 3QQCE 5C3EL 3GTJL 3M4OL 3KYYA 4JAFA 1R0FA 2A6ED 2H12A 1IROA 1IU5A 3S1RL 2PVEA 1B2JA 2B5ID 4X6AL 2BE5D 3S16L 1ZRPA 1NXEA 2JA7L 3RZTA 4AR4A 3PL5A 5EIOC 1TWGL 1P7PA 3GTKL 2A69D 5MGNA 2A6HD 3J7Y1 1YK4A 3P2AA 2XJUA 5FJ8L 2M4YA 2E2IL 1WCML 3M3YL 1BFYA 3PWFA 4AHXA 1CAAA 3KYWA 5MFZA 1VZIA 4ZN3B 2E2HL 7RXNA 5C44L 3WWNB 2K2DA 1I50L 4A3EL 4K9FA 4A3JL 5MLC3 2NVTL 2M6OA 1BQ9A 3GTQL 1IU6A 3FDJA 5EINC 4AI0A 5DM71 3P8BA 2LCQA 4UY81 4BBSL 3S14L 5H1Sc 2CKAA 1CADA 4A3LL 1YUXA 4C3IL 2APOB 3HAXC 1WJVA 1SMWA 1IW7D 1YUZA 4AR3A 4V196 5GAEc 3PKIA 3LWOB 1ODHA 5DM61 4BY7L 4WFN1 2XJVA 4ZN1B 1SMUA 3GTML 3MQKB 3GTPL 4JAGA 1R0JA 2RFKB 1NNQA 2XJTA 1S30A 3H3VM 2V0EA 4POFA 1E8JA 1S2ZA 3ZG6A 1PFUA 2MS3A 2KKDA 4A3BL 3RZOL 2R7ZL 2B63L 4U671 1I6HL 1FHHA 1RDVA 5IY0A 2C6BA 2O5JD 1FHMA 3HOYL 1K83L 1OWCA 4JAEA 5IYCL 1QCVA 3S1ML 6RXNA 2HR5A 3KYXA 2VL6A 4RXNA 5M3ML 3I4ML 2XJRA 1F4LA 3JR7A 4C3JL 1OWBA 2V3BB 3LWQB 3QVDA 1SMMA 3HKZP 4XGHA 5M5WL 2QL0A 5IYBL 1NXGA 1Y1VL 1PFYA 1DVBA 4A93L 4LHLA 5IP7L 1RWDA 3K35A 4BXXL 5IP9L 4TVMA 8RXNA 2R92L 2PVXA 4C3HL 3IU3I 1LKMA 1RYQA 4LHNA 3HOXL 4A3DL 3VPBE 3KYUA 3B08B 2E2JL 4YWMA 2HVYC 4YWLA 3RZDL 4A3KL
chains in the Genus database with same CATH topology
4Y52L 3S2DL 3GTOL 2NVQL 2WB1P 4Y7NL 2VUML 4A3IL 3GTLL 1TWFL 5M5XL 3K7AL 3S1QL 3HOUL 3PO2L 5IYDL 4BY7L 2NVXL 2JA6L 3PO3L 5C3EL 3GTJL 3M4OL 3GTML 3GTPL 4A3FL 3H3VM 2NVYL 3S1RL 3GTGL 3H0GL 4C3IL 4X6AL 3HOVL 3S16L 4A3BL 2JA7L 3RZOL 2R7ZL 5M5YL 4A3GL 2R93L 1TWAL 2B63L 2PMZP 1TWGL 1I6HL 3GTKL 3S17L 3HOZL 5FJ8L 2E2IL 2JA8L 1WCML 4BY1L 3M3YL 3HOYL 1TWHL 1K83L 5IYCL 5M3FL 3S1ML 2E2HL 2Y0SP 4C2M1 4BBRL 5M3ML 5C44L 3I4ML 3HOWL 1R9TL 1I3QL 1SFOL 3CQZL 4C3JL 2YU9L 5C4XL 1I50L 4A3EL 4QIWP 4A3JL 3HKZP 4A3ML 5C4JL 5M5WL 5IYBL 2NVTL 3S15L 1Y1VL 4A93L 3S2HL 4A3CL 5IP7L 3GTQL 4AYBP 4BXXL 5IP9L 2WAQP 2R92L 4C3HL 2JA5L 3S1NL 4BBSL 3S14L 3HOXL 4A3DL 1TWCL 3I4NL 5FLML 4A3LL 2E2JL 3FKIL 3RZDL 1Y1WL 4A3KL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Y52 L;  3S2D L;  3GTO L;  2NVQ L;  2WB1 P;  4Y7N L;  2VUM L;  4A3I L;  3GTL L;  1TWF L;  5M5X L;  3K7A L;  3S1Q L;  3HOU L;  3PO2 L;  5IYD L;  4BY7 L;  2NVX L;  2JA6 L;  3PO3 L;  5C3E L;  3GTJ L;  3M4O L;  3GTM L;  3GTP L;  4A3F L;  3H3V M;  2NVY L;  3S1R L;  3GTG L;  3H0G L;  4C3I L;  4X6A L;  3HOV L;  3S16 L;  4A3B L;  2JA7 L;  3RZO L;  2R7Z L;  5M5Y L;  4A3G L;  2R93 L;  1TWA L;  2B63 L;  2PMZ P;  1TWG L;  1I6H L;  3GTK L;  3S17 L;  3HOZ L;  5FJ8 L;  2E2I L;  2JA8 L;  1WCM L;  4BY1 L;  3M3Y L;  3HOY L;  1TWH L;  1K83 L;  5IYC L;  5M3F L;  3S1M L;  2E2H L;  2Y0S P;  4C2M 1;  4BBR L;  5M3M L;  5C44 L;  3I4M L;  3HOW L;  1R9T L;  1I3Q L;  1SFO L;  3CQZ L;  4C3J L;  2YU9 L;  5C4X L;  1I50 L;  4A3E L;  4QIW P;  4A3J L;  3HKZ P;  4A3M L;  5C4J L;  5M5W L;  5IYB L;  2NVT L;  3S15 L;  1Y1V L;  4A93 L;  3S2H L;  4A3C L;  5IP7 L;  3GTQ L;  4AYB P;  4BXX L;  5IP9 L;  2WAQ P;  2R92 L;  4C3H L;  2JA5 L;  3S1N L;  4BBS L;  3S14 L;  3HOX L;  4A3D L;  1TWC L;  3I4N L;  5FLM L;  4A3L L;  2E2J L;  3FKI L;  3RZD L;  1Y1W L;  4A3K L; 
#chains in the Genus database with same CATH topology
 4Y52 L;  1LKP A;  3GTO L;  4AR5 A;  2AUS B;  1IRN A;  5M5X L;  3K7A L;  3S1Q L;  3HOU L;  2AYJ A;  1LKO A;  2PSM C;  4A3F L;  3LWR B;  4TPU A;  3PZA A;  2JI2 A;  5MF6 A;  2KN9 A;  4GS7 D;  3H0G L;  2L0Z A;  3HOV L;  1JYB A;  1R0I A;  4A3G L;  2R93 L;  2CR8 A;  1C09 A;  2PMZ P;  3H97 A;  5K2M E;  3LWP B;  3A44 A;  2J9U B;  2GMG A;  1B2O A;  1PFW A;  4B8C D;  5AN9 H;  3H9C A;  2CKC A;  3B0A B;  2XJP A;  2Y0S P;  2V0F A;  1BRF A;  3SS2 A;  1I3Q L;  1SFO L;  3CQZ L;  3RZ6 A;  4A3M L;  5C4J L;  3S15 L;  3MSU A;  3S2H L;  4AI1 A;  1QQT A;  1VZH A;  2A68 D;  3H99 A;  2Z3R B;  2RDV A;  2JA5 L;  4ME3 A;  3I4N L;  2EY4 E;  2AQC A;  3H9B A;  3WWL A;  1Y1W L;  3PIP 1;  2ERS A;  3S2D L;  2VUM L;  4AI3 A;  3GTL L;  4AHZ A;  5JVG 1;  5JVH 1;  1R0G A;  2NVX L;  2JA6 L;  3PO3 L;  4AI2 A;  2ERJ A;  2NVY L;  3RYG A;  3GTG L;  1Z92 B;  4XXB B;  1T9Q A;  2ZIX A;  1PZX A;  1S24 A;  2XJQ A;  3PIO 1;  2JI1 A;  2Z3Q B;  1BQ8 A;  4E6Y A;  5M5Y L;  1YV1 A;  5AI2 A;  1TWA L;  2M4V A;  4AR6 A;  4POG A;  5MFP A;  4G6B A;  1B71 A;  3MPS A;  4AHY A;  3S17 L;  3HOZ L;  3LNL A;  3PKJ A;  2PYA A;  2XJS A;  2JA8 L;  1VZG A;  4BY1 L;  5AI3 A;  1TWH L;  1T9O A;  5M3F L;  5GAG c;  2NYD A;  2JI3 A;  2PPT A;  4C2M 1;  2M6P A;  4BBR L;  1H7V A;  1B13 A;  3HOW L;  1R9T L;  3HJY B;  2YU9 L;  5C4X L;  3KYV A;  4QIW P;  1PFV A;  1LTL A;  1RB9 A;  1RYT A;  4JAD A;  5RXN A;  1VCX A;  3LPE B;  4A3C L;  4AYB P;  1R0H A;  2WAQ P;  1T9P A;  4AHW A;  2C6A A;  3S1N L;  5GAH c;  1YK5 A;  1TWC L;  5FLM L;  3FKI L;  3NFP I;  3HJW B;  1BE7 A;  3LWV B;  2NVQ L;  2WB1 P;  4Y7N L;  3J7Z 1;  5GAD c;  4A3I L;  1RDG A;  1TWF L;  1DX8 A;  3PO2 L;  5IYD L;  1QYB A;  2DSX A;  3QQC E;  5C3E L;  3GTJ L;  3M4O L;  3KYY A;  4JAF A;  1R0F A;  2A6E D;  2H12 A;  1IRO A;  1IU5 A;  3S1R L;  2PVE A;  1B2J A;  2B5I D;  4X6A L;  2BE5 D;  3S16 L;  1ZRP A;  1NXE A;  2JA7 L;  3RZT A;  4AR4 A;  3PL5 A;  5EIO C;  1TWG L;  1P7P A;  3GTK L;  2A69 D;  5MGN A;  2A6H D;  3J7Y 1;  1YK4 A;  3P2A A;  2XJU A;  5FJ8 L;  2M4Y A;  2E2I L;  1WCM L;  3M3Y L;  1BFY A;  3PWF A;  4AHX A;  1CAA A;  3KYW A;  5MFZ A;  1VZI A;  4ZN3 B;  2E2H L;  7RXN A;  5C44 L;  3WWN B;  2K2D A;  1I50 L;  4A3E L;  4K9F A;  4A3J L;  5MLC 3;  2NVT L;  2M6O A;  1BQ9 A;  3GTQ L;  1IU6 A;  3FDJ A;  5EIN C;  4AI0 A;  5DM7 1;  3P8B A;  2LCQ A;  4UY8 1;  4BBS L;  3S14 L;  5H1S c;  2CKA A;  1CAD A;  4A3L L;  1YUX A;  4C3I L;  2APO B;  3HAX C;  1WJV A;  1SMW A;  1IW7 D;  1YUZ A;  4AR3 A;  4V19 6;  5GAE c;  3PKI A;  3LWO B;  1ODH A;  5DM6 1;  4BY7 L;  4WFN 1;  2XJV A;  4ZN1 B;  1SMU A;  3GTM L;  3MQK B;  3GTP L;  4JAG A;  1R0J A;  2RFK B;  1NNQ A;  2XJT A;  1S30 A;  3H3V M;  2V0E A;  4POF A;  1E8J A;  1S2Z A;  3ZG6 A;  1PFU A;  2MS3 A;  2KKD A;  4A3B L;  3RZO L;  2R7Z L;  2B63 L;  4U67 1;  1I6H L;  1FHH A;  1RDV A;  5IY0 A;  2C6B A;  2O5J D;  1FHM A;  3HOY L;  1K83 L;  1OWC A;  4JAE A;  5IYC L;  1QCV A;  3S1M L;  6RXN A;  2HR5 A;  3KYX A;  2VL6 A;  4RXN A;  5M3M L;  3I4M L;  2XJR A;  1F4L A;  3JR7 A;  4C3J L;  1OWB A;  2V3B B;  3LWQ B;  3QVD A;  1SMM A;  3HKZ P;  4XGH A;  5M5W L;  2QL0 A;  5IYB L;  1NXG A;  1Y1V L;  1PFY A;  1DVB A;  4A93 L;  4LHL A;  5IP7 L;  1RWD A;  3K35 A;  4BXX L;  5IP9 L;  4TVM A;  8RXN A;  2R92 L;  2PVX A;  4C3H L;  3IU3 I;  1LKM A;  1RYQ A;  4LHN A;  3HOX L;  4A3D L;  3VPB E;  3KYU A;  3B08 B;  2E2J L;  4YWM A;  2HVY C;  4YWL A;  3RZD L;  4A3K L; 
#chains in the Genus database with same CATH homology
 4Y52 L;  3S2D L;  3GTO L;  2NVQ L;  2WB1 P;  4Y7N L;  2VUM L;  4A3I L;  3GTL L;  1TWF L;  5M5X L;  3K7A L;  3S1Q L;  3HOU L;  3PO2 L;  5IYD L;  4BY7 L;  2NVX L;  2JA6 L;  3PO3 L;  5C3E L;  3GTJ L;  3M4O L;  3GTM L;  3GTP L;  4A3F L;  3H3V M;  2NVY L;  3S1R L;  3GTG L;  3H0G L;  4C3I L;  4X6A L;  3HOV L;  3S16 L;  4A3B L;  2JA7 L;  3RZO L;  2R7Z L;  5M5Y L;  4A3G L;  2R93 L;  1TWA L;  2B63 L;  2PMZ P;  1TWG L;  1I6H L;  3GTK L;  3S17 L;  3HOZ L;  5FJ8 L;  2E2I L;  2JA8 L;  1WCM L;  4BY1 L;  3M3Y L;  3HOY L;  1TWH L;  1K83 L;  5IYC L;  5M3F L;  3S1M L;  2E2H L;  2Y0S P;  4C2M 1;  4BBR L;  5M3M L;  5C44 L;  3I4M L;  3HOW L;  1R9T L;  1I3Q L;  1SFO L;  3CQZ L;  4C3J L;  2YU9 L;  5C4X L;  1I50 L;  4A3E L;  4QIW P;  4A3J L;  3HKZ P;  4A3M L;  5C4J L;  5M5W L;  5IYB L;  2NVT L;  3S15 L;  1Y1V L;  4A93 L;  3S2H L;  4A3C L;  5IP7 L;  3GTQ L;  4AYB P;  4BXX L;  5IP9 L;  2WAQ P;  2R92 L;  4C3H L;  2JA5 L;  3S1N L;  4BBS L;  3S14 L;  3HOX L;  4A3D L;  1TWC L;  3I4N L;  5FLM L;  4A3L L;  2E2J L;  3FKI L;  3RZD L;  1Y1W L;  4A3K L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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