3PO2L

Arrested rna polymerase ii elongation complex
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (32-35)TIV1 (31-34)TIV2 (41-44)Updating...
connected with : NaN
molecule tags Transferase/dna/rna
publication title Structural basis of RNA polymerase II backtracking, arrest and reactivation.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 3
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2010-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3po2L00
5C4JL 5C4XL 3GTML 2E2HL 4C3IL 3S14L 4A3FL 4A93L 3HOWL 1WCML 3PO3L 3GTOL 5IYBL 2NVXL 5M5XL 5IYCL 2JA5L 2E2IL 4A3ML 5M5WL 1I6HL 1TWCL 3GTPL 4A3BL 4A3GL 5IP7L 1TWAL 4QIWP 2PMZP 5FJ8L 3S2HL 1TWFL 3HOZL 3M3YL 5IYDL 2VUML 3GTQL 4C3HL 4BY7L 4BXXL 4AYBP 2YU9L 2WAQP 2WB1P 5M5YL 1I3QL 3H0GL 3GTJL 3I4NL 3S2DL 3M4OL 4A3DL 2Y0SP 2R7ZL 5M3ML 2R93L 3S1ML 3HKZP 1SFOL 3RZDL 4BY1L 1R9TL 2NVYL 3S17L 1I50L 2B63L 3PO2L 4A3EL 2R92L 4A3KL 3S15L 1Y1WL 3S1QL 5FLML 3HOVL 4A3IL 2E2JL 3RZOL 5C3EL 3S16L 3HOYL 5M3FL 2NVTL 3FKIL 1TWHL 3K7AL 3H3VM 4Y7NL 4A3LL 3GTKL 4X6AL 3HOXL 3CQZL 3S1RL 3HOUL 3S1NL 1TWGL 2JA6L 5IP9L 2JA8L 4BBSL 3GTLL 1Y1VL 2JA7L 3GTGL 4BBRL 4Y52L 5C44L 4C3JL 2NVQL 4A3CL 4A3JL 4C2M1 1K83L 3I4ML
chains in the Genus database with same CATH superfamily
2ERSA 3S14L 4A3FL 3PWFA 3K35A 3H9CA 2XJTA 3MQKB 1WCML 4TVMA 3QQCE 6RXNA 3WWNB 3WWLA 5EINC 2NVXL 1OWCA 2M6OA 2E2IL 2Z3RB 1I6HL 2XJRA 2C6BA 3LPEB 4QIWP 2CKCA 2PMZP 5FJ8L 3HOZL 3S2HL 5IYDL 4WFN1 3QVDA 4BY7L 5RXNA 3P2AA 1P7PA 4AYBP 2YU9L 5M5YL 3M4OL 3LNLA 2Y0SP 3HJYB 2R93L 1B13A 3H9BA 1SFOL 3RZDL 4BY1L 4XGHA 5GAGc 4LHLA 2NVYL 3S17L 1LKPA 1I50L 3PKIA 4A3KL 2XJVA 5AN9H 1NNQA 3KYXA 1VCXA 2KN9A 3HOYL 2M4YA 5IY0A 2DSXA 2PVEA 1JYBA 1R0FA 4RXNA 4AR3A 3H3VM 1LKMA 3CQZL 1BE7A 5GADc 5EIOC 5MFPA 4U671 2JA6L 4AI0A 5IP9L 2JI3A 4POFA 3JR7A 3GTLL 1Y1VL 3GTGL 5C44L 4C3JL 3KYWA 4A3CL 1R0HA 5K2ME 3I4ML 2V3BB 2XJPA 2PYAA 2LCQA 1E8JA 1WJVA 4C3IL 2RFKB 4A93L 2CR8A 1RYQA 3H99A 3P8BA 3LWOB 4ZN3B 3PZAA 3PO3L 4JAEA 5AI3A 2PSMC 5H1Sc 5M5XL 5IYCL 2EY4E 2JA5L 4A3ML 4ME3A 3SS2A 3A44A 4A3GL 1TWAL 4C3HL 2V0FA 1CADA 3MSUA 4ZN1B 1IW7D 4BXXL 2K2DA 1IU5A 1PFUA 3I4NL 4POGA 4A3DL 2V0EA 5M3ML 3S1ML 2H12A 3FDJA 1RB9A 5MF6A 3PIP1 2HVYC 1R0IA 2J9UB 1YK4A 3H97A 3HOVL 3NFPI 1FHMA 5C3EL 3S16L 2NVTL 1RWDA 3K7AL 1R0JA 4Y7NL 4A3LL 3MPSA 8RXNA 4X6AL 2PPTA 5GAEc 1DVBA 1YUZA 1BRFA 5DM71 3S1NL 2JA7L 2ERJA 4Y52L 1Z92B 5DM61 2NVQL 3RZ6A 4A3JL 3HAXC 5JVG1 5C4XL 4AHZA 2AQCA 4YWLA 3HOWL 2Z3QB 3GTOL 3PKJA 5IYBL 1B71A 2GMGA 1S24A 1T9OA 5M5WL 2ZIXA 1TWCL 3PIO1 2B5ID 3GTPL 2MS3A 5IP7L 3LWRB 1TWFL 1YUXA 3M3YL 3GTQL 3KYUA 3KYYA 1IROA 4AHYA 3LWVB 4AR5A 1SMUA 3KYVA 4AI2A 4AHXA 1BFYA 2WB1P 5JVH1 1PFYA 3H0GL 1IU6A 1OWBA 2VL6A 3S2DL 1BQ8A 1YV1A 2C6AA 1B2JA 3HKZP 2PVXA 5AI2A 3VPBE 1ODHA 2B63L 4XXBB 2A6HD 2APOB 2R92L 3B0AB 3LWQB 2NYDA 4GS7D 3S1QL 1S30A 4A3IL 2O5JD 4AI1A 2E2JL 3RZOL 1DX8A 1PFWA 4V196 1BQ9A 3ZG6A 3HOXL 1CAAA 2HR5A 1B2OA 1NXGA 2JI2A 3S1RL 3RYGA 3HOUL 1TWGL 4B8CD 4K9FA 4BBRL 4AHWA 1C09A 1R0GA 2BE5D 5GAHc 2AYJA 2CKAA 1K83L 5C4JL 3GTML 2E2HL 2L0ZA 1IRNA 1QCVA 1PFVA 4E6YA 3B08B 4AR6A 3J7Y1 5MGNA 1T9PA 2A69D 5MLC3 1FHHA 1LKOA 4JADA 4TPUA 1SMMA 1T9QA 4A3BL 5MFZA 1RDGA 2XJSA 2VUML 3IU3I 1ZRPA 3J7Z1 2WAQP 4LHNA 1I3QL 4G6BA 1H7VA 3GTJL 1F4LA 2A6ED 1QYBA 7RXNA 2R7ZL 2A68D 2JI1A 1RYTA 2M6PA 4AR4A 2QL0A 1PZXA 1R9TL 1YK5A 3PO2L 4A3EL 3S15L 1Y1WL 5FLML 4JAFA 1S2ZA 4AI3A 1VZGA 5M3FL 3FKIL 1TWHL 3RZTA 1VZHA 2M4VA 3GTKL 1SMWA 4UY81 2AUSB 1VZIA 3PL5A 2JA8L 2XJQA 4BBSL 3LWPB 4YWMA 1RDVA 4JAGA 2KKDA 1NXEA 1QQTA 3HJWB 4C2M1 1LTLA 2XJUA 2RDVA
chains in the Genus database with same CATH topology
5C4JL 5C4XL 3GTML 2E2HL 4C3IL 3S14L 4A3FL 4A93L 3HOWL 1WCML 3PO3L 3GTOL 5IYBL 2NVXL 5M5XL 5IYCL 2JA5L 2E2IL 4A3ML 5M5WL 1I6HL 1TWCL 3GTPL 4A3BL 4A3GL 5IP7L 1TWAL 4QIWP 2PMZP 5FJ8L 3S2HL 1TWFL 3HOZL 3M3YL 5IYDL 2VUML 3GTQL 4C3HL 4BY7L 4BXXL 4AYBP 2YU9L 2WAQP 2WB1P 5M5YL 1I3QL 3H0GL 3GTJL 3I4NL 3S2DL 3M4OL 4A3DL 2Y0SP 2R7ZL 5M3ML 2R93L 3S1ML 3HKZP 1SFOL 3RZDL 4BY1L 1R9TL 2NVYL 3S17L 1I50L 2B63L 3PO2L 4A3EL 2R92L 4A3KL 3S15L 1Y1WL 3S1QL 5FLML 3HOVL 4A3IL 2E2JL 3RZOL 5C3EL 3S16L 3HOYL 5M3FL 2NVTL 3FKIL 1TWHL 3K7AL 3H3VM 4Y7NL 4A3LL 3GTKL 4X6AL 3HOXL 3CQZL 3S1RL 3HOUL 3S1NL 1TWGL 2JA6L 5IP9L 2JA8L 4BBSL 3GTLL 1Y1VL 2JA7L 3GTGL 4BBRL 4Y52L 5C44L 4C3JL 2NVQL 4A3CL 4A3JL 4C2M1 1K83L 3I4ML
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C4J L;  5C4X L;  3GTM L;  2E2H L;  4C3I L;  3S14 L;  4A3F L;  4A93 L;  3HOW L;  1WCM L;  3PO3 L;  3GTO L;  5IYB L;  2NVX L;  5M5X L;  5IYC L;  2JA5 L;  2E2I L;  4A3M L;  5M5W L;  1I6H L;  1TWC L;  3GTP L;  4A3B L;  4A3G L;  5IP7 L;  1TWA L;  4QIW P;  2PMZ P;  5FJ8 L;  3S2H L;  1TWF L;  3HOZ L;  3M3Y L;  5IYD L;  2VUM L;  3GTQ L;  4C3H L;  4BY7 L;  4BXX L;  4AYB P;  2YU9 L;  2WAQ P;  2WB1 P;  5M5Y L;  1I3Q L;  3H0G L;  3GTJ L;  3I4N L;  3S2D L;  3M4O L;  4A3D L;  2Y0S P;  2R7Z L;  5M3M L;  2R93 L;  3S1M L;  3HKZ P;  1SFO L;  3RZD L;  4BY1 L;  1R9T L;  2NVY L;  3S17 L;  1I50 L;  2B63 L;  3PO2 L;  4A3E L;  2R92 L;  4A3K L;  3S15 L;  1Y1W L;  3S1Q L;  5FLM L;  3HOV L;  4A3I L;  2E2J L;  3RZO L;  5C3E L;  3S16 L;  3HOY L;  5M3F L;  2NVT L;  3FKI L;  1TWH L;  3K7A L;  3H3V M;  4Y7N L;  4A3L L;  3GTK L;  4X6A L;  3HOX L;  3CQZ L;  3S1R L;  3HOU L;  3S1N L;  1TWG L;  2JA6 L;  5IP9 L;  2JA8 L;  4BBS L;  3GTL L;  1Y1V L;  2JA7 L;  3GTG L;  4BBR L;  4Y52 L;  5C44 L;  4C3J L;  2NVQ L;  4A3C L;  4A3J L;  4C2M 1;  1K83 L;  3I4M L; 
#chains in the Genus database with same CATH topology
 2ERS A;  3S14 L;  4A3F L;  3PWF A;  3K35 A;  3H9C A;  2XJT A;  3MQK B;  1WCM L;  4TVM A;  3QQC E;  6RXN A;  3WWN B;  3WWL A;  5EIN C;  2NVX L;  1OWC A;  2M6O A;  2E2I L;  2Z3R B;  1I6H L;  2XJR A;  2C6B A;  3LPE B;  4QIW P;  2CKC A;  2PMZ P;  5FJ8 L;  3HOZ L;  3S2H L;  5IYD L;  4WFN 1;  3QVD A;  4BY7 L;  5RXN A;  3P2A A;  1P7P A;  4AYB P;  2YU9 L;  5M5Y L;  3M4O L;  3LNL A;  2Y0S P;  3HJY B;  2R93 L;  1B13 A;  3H9B A;  1SFO L;  3RZD L;  4BY1 L;  4XGH A;  5GAG c;  4LHL A;  2NVY L;  3S17 L;  1LKP A;  1I50 L;  3PKI A;  4A3K L;  2XJV A;  5AN9 H;  1NNQ A;  3KYX A;  1VCX A;  2KN9 A;  3HOY L;  2M4Y A;  5IY0 A;  2DSX A;  2PVE A;  1JYB A;  1R0F A;  4RXN A;  4AR3 A;  3H3V M;  1LKM A;  3CQZ L;  1BE7 A;  5GAD c;  5EIO C;  5MFP A;  4U67 1;  2JA6 L;  4AI0 A;  5IP9 L;  2JI3 A;  4POF A;  3JR7 A;  3GTL L;  1Y1V L;  3GTG L;  5C44 L;  4C3J L;  3KYW A;  4A3C L;  1R0H A;  5K2M E;  3I4M L;  2V3B B;  2XJP A;  2PYA A;  2LCQ A;  1E8J A;  1WJV A;  4C3I L;  2RFK B;  4A93 L;  2CR8 A;  1RYQ A;  3H99 A;  3P8B A;  3LWO B;  4ZN3 B;  3PZA A;  3PO3 L;  4JAE A;  5AI3 A;  2PSM C;  5H1S c;  5M5X L;  5IYC L;  2EY4 E;  2JA5 L;  4A3M L;  4ME3 A;  3SS2 A;  3A44 A;  4A3G L;  1TWA L;  4C3H L;  2V0F A;  1CAD A;  3MSU A;  4ZN1 B;  1IW7 D;  4BXX L;  2K2D A;  1IU5 A;  1PFU A;  3I4N L;  4POG A;  4A3D L;  2V0E A;  5M3M L;  3S1M L;  2H12 A;  3FDJ A;  1RB9 A;  5MF6 A;  3PIP 1;  2HVY C;  1R0I A;  2J9U B;  1YK4 A;  3H97 A;  3HOV L;  3NFP I;  1FHM A;  5C3E L;  3S16 L;  2NVT L;  1RWD A;  3K7A L;  1R0J A;  4Y7N L;  4A3L L;  3MPS A;  8RXN A;  4X6A L;  2PPT A;  5GAE c;  1DVB A;  1YUZ A;  1BRF A;  5DM7 1;  3S1N L;  2JA7 L;  2ERJ A;  4Y52 L;  1Z92 B;  5DM6 1;  2NVQ L;  3RZ6 A;  4A3J L;  3HAX C;  5JVG 1;  5C4X L;  4AHZ A;  2AQC A;  4YWL A;  3HOW L;  2Z3Q B;  3GTO L;  3PKJ A;  5IYB L;  1B71 A;  2GMG A;  1S24 A;  1T9O A;  5M5W L;  2ZIX A;  1TWC L;  3PIO 1;  2B5I D;  3GTP L;  2MS3 A;  5IP7 L;  3LWR B;  1TWF L;  1YUX A;  3M3Y L;  3GTQ L;  3KYU A;  3KYY A;  1IRO A;  4AHY A;  3LWV B;  4AR5 A;  1SMU A;  3KYV A;  4AI2 A;  4AHX A;  1BFY A;  2WB1 P;  5JVH 1;  1PFY A;  3H0G L;  1IU6 A;  1OWB A;  2VL6 A;  3S2D L;  1BQ8 A;  1YV1 A;  2C6A A;  1B2J A;  3HKZ P;  2PVX A;  5AI2 A;  3VPB E;  1ODH A;  2B63 L;  4XXB B;  2A6H D;  2APO B;  2R92 L;  3B0A B;  3LWQ B;  2NYD A;  4GS7 D;  3S1Q L;  1S30 A;  4A3I L;  2O5J D;  4AI1 A;  2E2J L;  3RZO L;  1DX8 A;  1PFW A;  4V19 6;  1BQ9 A;  3ZG6 A;  3HOX L;  1CAA A;  2HR5 A;  1B2O A;  1NXG A;  2JI2 A;  3S1R L;  3RYG A;  3HOU L;  1TWG L;  4B8C D;  4K9F A;  4BBR L;  4AHW A;  1C09 A;  1R0G A;  2BE5 D;  5GAH c;  2AYJ A;  2CKA A;  1K83 L;  5C4J L;  3GTM L;  2E2H L;  2L0Z A;  1IRN A;  1QCV A;  1PFV A;  4E6Y A;  3B08 B;  4AR6 A;  3J7Y 1;  5MGN A;  1T9P A;  2A69 D;  5MLC 3;  1FHH A;  1LKO A;  4JAD A;  4TPU A;  1SMM A;  1T9Q A;  4A3B L;  5MFZ A;  1RDG A;  2XJS A;  2VUM L;  3IU3 I;  1ZRP A;  3J7Z 1;  2WAQ P;  4LHN A;  1I3Q L;  4G6B A;  1H7V A;  3GTJ L;  1F4L A;  2A6E D;  1QYB A;  7RXN A;  2R7Z L;  2A68 D;  2JI1 A;  1RYT A;  2M6P A;  4AR4 A;  2QL0 A;  1PZX A;  1R9T L;  1YK5 A;  3PO2 L;  4A3E L;  3S15 L;  1Y1W L;  5FLM L;  4JAF A;  1S2Z A;  4AI3 A;  1VZG A;  5M3F L;  3FKI L;  1TWH L;  3RZT A;  1VZH A;  2M4V A;  3GTK L;  1SMW A;  4UY8 1;  2AUS B;  1VZI A;  3PL5 A;  2JA8 L;  2XJQ A;  4BBS L;  3LWP B;  4YWM A;  1RDV A;  4JAG A;  2KKD A;  1NXE A;  1QQT A;  3HJW B;  4C2M 1;  1LTL A;  2XJU A;  2RDV A; 
#chains in the Genus database with same CATH homology
 5C4J L;  5C4X L;  3GTM L;  2E2H L;  4C3I L;  3S14 L;  4A3F L;  4A93 L;  3HOW L;  1WCM L;  3PO3 L;  3GTO L;  5IYB L;  2NVX L;  5M5X L;  5IYC L;  2JA5 L;  2E2I L;  4A3M L;  5M5W L;  1I6H L;  1TWC L;  3GTP L;  4A3B L;  4A3G L;  5IP7 L;  1TWA L;  4QIW P;  2PMZ P;  5FJ8 L;  3S2H L;  1TWF L;  3HOZ L;  3M3Y L;  5IYD L;  2VUM L;  3GTQ L;  4C3H L;  4BY7 L;  4BXX L;  4AYB P;  2YU9 L;  2WAQ P;  2WB1 P;  5M5Y L;  1I3Q L;  3H0G L;  3GTJ L;  3I4N L;  3S2D L;  3M4O L;  4A3D L;  2Y0S P;  2R7Z L;  5M3M L;  2R93 L;  3S1M L;  3HKZ P;  1SFO L;  3RZD L;  4BY1 L;  1R9T L;  2NVY L;  3S17 L;  1I50 L;  2B63 L;  3PO2 L;  4A3E L;  2R92 L;  4A3K L;  3S15 L;  1Y1W L;  3S1Q L;  5FLM L;  3HOV L;  4A3I L;  2E2J L;  3RZO L;  5C3E L;  3S16 L;  3HOY L;  5M3F L;  2NVT L;  3FKI L;  1TWH L;  3K7A L;  3H3V M;  4Y7N L;  4A3L L;  3GTK L;  4X6A L;  3HOX L;  3CQZ L;  3S1R L;  3HOU L;  3S1N L;  1TWG L;  2JA6 L;  5IP9 L;  2JA8 L;  4BBS L;  3GTL L;  1Y1V L;  2JA7 L;  3GTG L;  4BBR L;  4Y52 L;  5C44 L;  4C3J L;  2NVQ L;  4A3C L;  4A3J L;  4C2M 1;  1K83 L;  3I4M L; 
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