3PO3L

Arrested rna polymerase ii reactivation intermediate
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (32-35)TIV1 (31-34)S1 (29-30)Updating...
connected with : NaN
molecule tags Transferase/dna/rna
source organism Saccharomyces cerevisiae
publication title Structural basis of RNA polymerase II backtracking, arrest and reactivation.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2010-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3po3L00
2JA6L 3RZOL 4BXXL 4A3LL 3GTPL 3GTKL 3S17L 3PO2L 5C4JL 3HOZL 4A3EL 3S15L 4BY1L 3GTQL 3S16L 3HOVL 3PO3L 1I3QL 3S2DL 1I50L 4C3JL 2YU9L 3S14L 4A3DL 5C3EL 1I6HL 1TWHL 3H3VM 5M5YL 1WCML 5IYCL 5M5XL 1Y1WL 2NVQL 4BBSL 2PMZP 4Y52L 3M3YL 3S1ML 2R93L 2Y0SP 3I4ML 3HOWL 3GTGL 3HOXL 3H0GL 2R92L 5C4XL 5IYBL 2WAQP 2JA7L 2NVXL 3GTLL 1SFOL 4BBRL 3HKZP 1K83L 2R7ZL 5IP7L 3FKIL 5FLML 4AYBP 4A93L 1TWGL 3HOYL 3M4OL 4A3ML 5M5WL 2JA5L 3S1RL 4BY7L 4X6AL 2E2HL 1TWFL 3GTOL 2VUML 2E2IL 2NVYL 4C2M1 1TWCL 4Y7NL 1R9TL 3S1NL 3CQZL 2E2JL 3S1QL 5IYDL 3S2HL 3K7AL 5IP9L 4A3BL 4A3GL 2WB1P 1TWAL 4A3FL 4A3CL 3GTJL 3HOUL 3I4NL 5FJ8L 4C3IL 3GTML 4A3IL 2JA8L 5M3ML 4A3JL 2B63L 2NVTL 4QIWP 4C3HL 1Y1VL 5C44L 3RZDL 4A3KL 5M3FL
chains in the Genus database with same CATH superfamily
3RZOL 4BXXL 3B08B 3PO2L 4AI2A 4YWLA 4POFA 3B0AB 2O5JD 5EINC 2AYJA 3S15L 1NXGA 4BY1L 1YUZA 3PO3L 2CKAA 1I3QL 2PVEA 5EIOC 5JVH1 5GAEc 3FDJA 1BQ9A 4A3DL 1VZGA 7RXNA 1TWHL 1H7VA 2M4YA 6RXNA 8RXNA 5GAHc 5M5YL 1WCML 5IYCL 5M5XL 2XJTA 3PKJA 2Z3QB 5MFPA 1WJVA 3S1ML 3NFPI 2XJUA 5MF6A 2Y0SP 3I4ML 1ZRPA 1VZHA 1PFUA 5MGNA 5IYBL 1T9OA 3IU3I 5JVG1 1SFOL 1PFYA 2VL6A 2EY4E 5K2ME 2AQCA 5AN9H 2R7ZL 5IP7L 2C6BA 3WWLA 5FLML 2L0ZA 4AI0A 1TWGL 3M4OL 5M5WL 2JA5L 2E2HL 2VUML 4ME3A 3P2AA 1TWCL 3KYXA 2RFKB 1VZIA 2E2JL 5IYDL 3SS2A 5IP9L 1CADA 5H1Sc 3HOUL 1RB9A 5FJ8L 3P8BA 2B63L 1S24A 1BRFA 4C3HL 1B2OA 1YUXA 1JYBA 2V0FA 1B2JA 4JAEA 2C6AA 1S2ZA 3GTPL 3RZ6A 3S17L 3PWFA 5C4JL 3LWOB 3HOZL 1C09A 4AHYA 3KYUA 2A68D 3GTQL 5DM71 3S2DL 4K9FA 1SMMA 4JADA 2YU9L 3S14L 4GS7D 1I6HL 4AR6A 1S30A 3H3VM 1YK4A 1CAAA 2JI1A 1Y1WL 1LKPA 2NVQL 3MPSA 1SMUA 2R93L 3J7Y1 3GTGL 1LKMA 3J7Z1 5C4XL 2H12A 4AR5A 3GTLL 3PIO1 1F4LA 1T9QA 3RZTA 3FKIL 4AYBP 4AI3A 1LTLA 4YWMA 3HOYL 3S1RL 1SMWA 4BY7L 3LPEB 1TWFL 4AI1A 3LNLA 2NVYL 4UY81 4Y7NL 1RYQA 3S1NL 1OWCA 2GMGA 4LHNA 4AR4A 2B5ID 4AHZA 2DSXA 2HR5A 4XXBB 1FHMA 1DX8A 1TWAL 4A3CL 3ZG6A 3GTJL 1DVBA 3I4NL 2JA8L 5M3ML 2JI3A 1B71A 2XJPA 1IRNA 2NVTL 5C44L 3RZDL 4A3KL 4POGA 2V0EA 2PYAA 3PIP1 4ZN1B 5MFZA 1BFYA 4A3EL 3MQKB 5GAGc 2ERJA 3S16L 4U671 3HAXC 5AI3A 1LKOA 1RYTA 1I50L 1R0HA 4C3JL 5C3EL 3K35A 2XJRA 5AI2A 2A69D 3VPBE 2XJSA 4AHXA 4RXNA 3LWRB 4Y52L 3M3YL 1FHHA 1PFVA 2XJQA 3MSUA 3HOWL 3LWVB 4JAFA 1PZXA 2R92L 3QQCE 2WAQP 2NVXL 2RDVA 5RXNA 4ZN3B 2QL0A 1OWBA 2PVXA 1YK5A 3QVDA 1K83L 1P7PA 4A93L 4AHWA 2JI2A 3WWNB 2LCQA 4X6AL 4E6YA 1E8JA 2E2IL 3LWPB 4C2M1 2ZIXA 1NXEA 3H9CA 3K7AL 2APOB 4A3GL 4B8CD 4LHLA 3KYVA 5MLC3 4C3IL 1VCXA 1IROA 4A3IL 3KYYA 1R0IA 1BE7A 1IU5A 1ODHA 2KKDA 4XGHA 3HJYB 1Y1VL 2JA6L 2PSMC 1QQTA 4A3LL 3GTKL 3A44A 1YV1A 3PZAA 4TVMA 4JAGA 3JR7A 2K2DA 3HOVL 2M4VA 2ERSA 1IW7D 2M6OA 2A6HD 5GADc 1R0FA 1NNQA 2V3BB 4BBSL 2PMZP 2Z3RB 5DM61 2BE5D 1RDVA 2MS3A 3H97A 5IY0A 1BQ8A 3HOXL 3LWQB 2J9UB 3H0GL 2HVYC 3HJWB 2JA7L 1R0JA 1PFWA 1T9PA 2CKCA 4BBRL 3HKZP 4AR3A 2M6PA 1B13A 4TPUA 3H9BA 4A3ML 2A6ED 1IU6A 2XJVA 1RWDA 3GTOL 1RDGA 2PPTA 3PL5A 1QYBA 3PKIA 1Z92B 1R9TL 3CQZL 4WFN1 3S1QL 3S2HL 4A3BL 4V196 2WB1P 3RYGA 4A3FL 2KN9A 1QCVA 4G6BA 3GTML 2AUSB 2CR8A 4A3JL 2NYDA 3KYWA 1R0GA 3H99A 4QIWP 5M3FL
chains in the Genus database with same CATH topology
2JA6L 3RZOL 4BXXL 4A3LL 3GTPL 3GTKL 3S17L 3PO2L 5C4JL 3HOZL 4A3EL 3S15L 4BY1L 3GTQL 3S16L 3HOVL 3PO3L 1I3QL 3S2DL 1I50L 4C3JL 2YU9L 3S14L 4A3DL 5C3EL 1I6HL 1TWHL 3H3VM 5M5YL 1WCML 5IYCL 5M5XL 1Y1WL 2NVQL 4BBSL 2PMZP 4Y52L 3M3YL 3S1ML 2R93L 2Y0SP 3I4ML 3HOWL 3GTGL 3HOXL 3H0GL 2R92L 5C4XL 5IYBL 2WAQP 2JA7L 2NVXL 3GTLL 1SFOL 4BBRL 3HKZP 1K83L 2R7ZL 5IP7L 3FKIL 5FLML 4AYBP 4A93L 1TWGL 3HOYL 3M4OL 4A3ML 5M5WL 2JA5L 3S1RL 4BY7L 4X6AL 2E2HL 1TWFL 3GTOL 2VUML 2E2IL 2NVYL 4C2M1 1TWCL 4Y7NL 1R9TL 3S1NL 3CQZL 2E2JL 3S1QL 5IYDL 3S2HL 3K7AL 5IP9L 4A3BL 4A3GL 2WB1P 1TWAL 4A3FL 4A3CL 3GTJL 3HOUL 3I4NL 5FJ8L 4C3IL 3GTML 4A3IL 2JA8L 5M3ML 4A3JL 2B63L 2NVTL 4QIWP 4C3HL 1Y1VL 5C44L 3RZDL 4A3KL 5M3FL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA6 L;  3RZO L;  4BXX L;  4A3L L;  3GTP L;  3GTK L;  3S17 L;  3PO2 L;  5C4J L;  3HOZ L;  4A3E L;  3S15 L;  4BY1 L;  3GTQ L;  3S16 L;  3HOV L;  3PO3 L;  1I3Q L;  3S2D L;  1I50 L;  4C3J L;  2YU9 L;  3S14 L;  4A3D L;  5C3E L;  1I6H L;  1TWH L;  3H3V M;  5M5Y L;  1WCM L;  5IYC L;  5M5X L;  1Y1W L;  2NVQ L;  4BBS L;  2PMZ P;  4Y52 L;  3M3Y L;  3S1M L;  2R93 L;  2Y0S P;  3I4M L;  3HOW L;  3GTG L;  3HOX L;  3H0G L;  2R92 L;  5C4X L;  5IYB L;  2WAQ P;  2JA7 L;  2NVX L;  3GTL L;  1SFO L;  4BBR L;  3HKZ P;  1K83 L;  2R7Z L;  5IP7 L;  3FKI L;  5FLM L;  4AYB P;  4A93 L;  1TWG L;  3HOY L;  3M4O L;  4A3M L;  5M5W L;  2JA5 L;  3S1R L;  4BY7 L;  4X6A L;  2E2H L;  1TWF L;  3GTO L;  2VUM L;  2E2I L;  2NVY L;  4C2M 1;  1TWC L;  4Y7N L;  1R9T L;  3S1N L;  3CQZ L;  2E2J L;  3S1Q L;  5IYD L;  3S2H L;  3K7A L;  5IP9 L;  4A3B L;  4A3G L;  2WB1 P;  1TWA L;  4A3F L;  4A3C L;  3GTJ L;  3HOU L;  3I4N L;  5FJ8 L;  4C3I L;  3GTM L;  4A3I L;  2JA8 L;  5M3M L;  4A3J L;  2B63 L;  2NVT L;  4QIW P;  4C3H L;  1Y1V L;  5C44 L;  3RZD L;  4A3K L;  5M3F L; 
#chains in the Genus database with same CATH topology
 3RZO L;  4BXX L;  3B08 B;  3PO2 L;  4AI2 A;  4YWL A;  4POF A;  3B0A B;  2O5J D;  5EIN C;  2AYJ A;  3S15 L;  1NXG A;  4BY1 L;  1YUZ A;  3PO3 L;  2CKA A;  1I3Q L;  2PVE A;  5EIO C;  5JVH 1;  5GAE c;  3FDJ A;  1BQ9 A;  4A3D L;  1VZG A;  7RXN A;  1TWH L;  1H7V A;  2M4Y A;  6RXN A;  8RXN A;  5GAH c;  5M5Y L;  1WCM L;  5IYC L;  5M5X L;  2XJT A;  3PKJ A;  2Z3Q B;  5MFP A;  1WJV A;  3S1M L;  3NFP I;  2XJU A;  5MF6 A;  2Y0S P;  3I4M L;  1ZRP A;  1VZH A;  1PFU A;  5MGN A;  5IYB L;  1T9O A;  3IU3 I;  5JVG 1;  1SFO L;  1PFY A;  2VL6 A;  2EY4 E;  5K2M E;  2AQC A;  5AN9 H;  2R7Z L;  5IP7 L;  2C6B A;  3WWL A;  5FLM L;  2L0Z A;  4AI0 A;  1TWG L;  3M4O L;  5M5W L;  2JA5 L;  2E2H L;  2VUM L;  4ME3 A;  3P2A A;  1TWC L;  3KYX A;  2RFK B;  1VZI A;  2E2J L;  5IYD L;  3SS2 A;  5IP9 L;  1CAD A;  5H1S c;  3HOU L;  1RB9 A;  5FJ8 L;  3P8B A;  2B63 L;  1S24 A;  1BRF A;  4C3H L;  1B2O A;  1YUX A;  1JYB A;  2V0F A;  1B2J A;  4JAE A;  2C6A A;  1S2Z A;  3GTP L;  3RZ6 A;  3S17 L;  3PWF A;  5C4J L;  3LWO B;  3HOZ L;  1C09 A;  4AHY A;  3KYU A;  2A68 D;  3GTQ L;  5DM7 1;  3S2D L;  4K9F A;  1SMM A;  4JAD A;  2YU9 L;  3S14 L;  4GS7 D;  1I6H L;  4AR6 A;  1S30 A;  3H3V M;  1YK4 A;  1CAA A;  2JI1 A;  1Y1W L;  1LKP A;  2NVQ L;  3MPS A;  1SMU A;  2R93 L;  3J7Y 1;  3GTG L;  1LKM A;  3J7Z 1;  5C4X L;  2H12 A;  4AR5 A;  3GTL L;  3PIO 1;  1F4L A;  1T9Q A;  3RZT A;  3FKI L;  4AYB P;  4AI3 A;  1LTL A;  4YWM A;  3HOY L;  3S1R L;  1SMW A;  4BY7 L;  3LPE B;  1TWF L;  4AI1 A;  3LNL A;  2NVY L;  4UY8 1;  4Y7N L;  1RYQ A;  3S1N L;  1OWC A;  2GMG A;  4LHN A;  4AR4 A;  2B5I D;  4AHZ A;  2DSX A;  2HR5 A;  4XXB B;  1FHM A;  1DX8 A;  1TWA L;  4A3C L;  3ZG6 A;  3GTJ L;  1DVB A;  3I4N L;  2JA8 L;  5M3M L;  2JI3 A;  1B71 A;  2XJP A;  1IRN A;  2NVT L;  5C44 L;  3RZD L;  4A3K L;  4POG A;  2V0E A;  2PYA A;  3PIP 1;  4ZN1 B;  5MFZ A;  1BFY A;  4A3E L;  3MQK B;  5GAG c;  2ERJ A;  3S16 L;  4U67 1;  3HAX C;  5AI3 A;  1LKO A;  1RYT A;  1I50 L;  1R0H A;  4C3J L;  5C3E L;  3K35 A;  2XJR A;  5AI2 A;  2A69 D;  3VPB E;  2XJS A;  4AHX A;  4RXN A;  3LWR B;  4Y52 L;  3M3Y L;  1FHH A;  1PFV A;  2XJQ A;  3MSU A;  3HOW L;  3LWV B;  4JAF A;  1PZX A;  2R92 L;  3QQC E;  2WAQ P;  2NVX L;  2RDV A;  5RXN A;  4ZN3 B;  2QL0 A;  1OWB A;  2PVX A;  1YK5 A;  3QVD A;  1K83 L;  1P7P A;  4A93 L;  4AHW A;  2JI2 A;  3WWN B;  2LCQ A;  4X6A L;  4E6Y A;  1E8J A;  2E2I L;  3LWP B;  4C2M 1;  2ZIX A;  1NXE A;  3H9C A;  3K7A L;  2APO B;  4A3G L;  4B8C D;  4LHL A;  3KYV A;  5MLC 3;  4C3I L;  1VCX A;  1IRO A;  4A3I L;  3KYY A;  1R0I A;  1BE7 A;  1IU5 A;  1ODH A;  2KKD A;  4XGH A;  3HJY B;  1Y1V L;  2JA6 L;  2PSM C;  1QQT A;  4A3L L;  3GTK L;  3A44 A;  1YV1 A;  3PZA A;  4TVM A;  4JAG A;  3JR7 A;  2K2D A;  3HOV L;  2M4V A;  2ERS A;  1IW7 D;  2M6O A;  2A6H D;  5GAD c;  1R0F A;  1NNQ A;  2V3B B;  4BBS L;  2PMZ P;  2Z3R B;  5DM6 1;  2BE5 D;  1RDV A;  2MS3 A;  3H97 A;  5IY0 A;  1BQ8 A;  3HOX L;  3LWQ B;  2J9U B;  3H0G L;  2HVY C;  3HJW B;  2JA7 L;  1R0J A;  1PFW A;  1T9P A;  2CKC A;  4BBR L;  3HKZ P;  4AR3 A;  2M6P A;  1B13 A;  4TPU A;  3H9B A;  4A3M L;  2A6E D;  1IU6 A;  2XJV A;  1RWD A;  3GTO L;  1RDG A;  2PPT A;  3PL5 A;  1QYB A;  3PKI A;  1Z92 B;  1R9T L;  3CQZ L;  4WFN 1;  3S1Q L;  3S2H L;  4A3B L;  4V19 6;  2WB1 P;  3RYG A;  4A3F L;  2KN9 A;  1QCV A;  4G6B A;  3GTM L;  2AUS B;  2CR8 A;  4A3J L;  2NYD A;  3KYW A;  1R0G A;  3H99 A;  4QIW P;  5M3F L; 
#chains in the Genus database with same CATH homology
 2JA6 L;  3RZO L;  4BXX L;  4A3L L;  3GTP L;  3GTK L;  3S17 L;  3PO2 L;  5C4J L;  3HOZ L;  4A3E L;  3S15 L;  4BY1 L;  3GTQ L;  3S16 L;  3HOV L;  3PO3 L;  1I3Q L;  3S2D L;  1I50 L;  4C3J L;  2YU9 L;  3S14 L;  4A3D L;  5C3E L;  1I6H L;  1TWH L;  3H3V M;  5M5Y L;  1WCM L;  5IYC L;  5M5X L;  1Y1W L;  2NVQ L;  4BBS L;  2PMZ P;  4Y52 L;  3M3Y L;  3S1M L;  2R93 L;  2Y0S P;  3I4M L;  3HOW L;  3GTG L;  3HOX L;  3H0G L;  2R92 L;  5C4X L;  5IYB L;  2WAQ P;  2JA7 L;  2NVX L;  3GTL L;  1SFO L;  4BBR L;  3HKZ P;  1K83 L;  2R7Z L;  5IP7 L;  3FKI L;  5FLM L;  4AYB P;  4A93 L;  1TWG L;  3HOY L;  3M4O L;  4A3M L;  5M5W L;  2JA5 L;  3S1R L;  4BY7 L;  4X6A L;  2E2H L;  1TWF L;  3GTO L;  2VUM L;  2E2I L;  2NVY L;  4C2M 1;  1TWC L;  4Y7N L;  1R9T L;  3S1N L;  3CQZ L;  2E2J L;  3S1Q L;  5IYD L;  3S2H L;  3K7A L;  5IP9 L;  4A3B L;  4A3G L;  2WB1 P;  1TWA L;  4A3F L;  4A3C L;  3GTJ L;  3HOU L;  3I4N L;  5FJ8 L;  4C3I L;  3GTM L;  4A3I L;  2JA8 L;  5M3M L;  4A3J L;  2B63 L;  2NVT L;  4QIW P;  4C3H L;  1Y1V L;  5C44 L;  3RZD L;  4A3K L;  5M3F L; 
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