3PO3L

Arrested rna polymerase ii reactivation intermediate
Total Genus 2
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis of RNA polymerase II backtracking, arrest and reactivation.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
molecule tags Transferase/dna/rna
source organism Saccharomyces cerevisiae
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2010-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3po3L00
4Y7NL 3S1QL 3RZOL 1WCML 3S2HL 4C3IL 3GTOL 4A3EL 1SFOL 3FKIL 5IYDL 5IYCL 4AYBP 3HOWL 3CQZL 3M4OL 2JA6L 3HOXL 2B63L 2NVQL 5C4JL 4BY7L 2PMZP 5FJ8L 4Y52L 3S15L 4A3DL 5IYBL 5M3FL 4QIWP 5C3EL 4BBRL 2VUML 4C2M1 4A3ML 4C3HL 4A3IL 2NVTL 3GTGL 4BBSL 3GTJL 5M5XL 2E2HL 1TWGL 2Y0SP 3M3YL 3GTQL 3K7AL 3S17L 2E2IL 3GTLL 3S1ML 3S16L 3I4NL 2JA5L 3GTKL 4A3LL 1TWCL 1TWFL 3PO2L 3HOZL 3I4ML 3HKZP 1TWAL 5C4XL 4A3BL 1I3QL 1I6HL 2R7ZL 1I50L 1TWHL 3S14L 3S1NL 3S2DL 3PO3L 5C44L 2WB1P 2R92L 4BXXL 4X6AL 4A3CL 3GTML 3HOVL 5IP7L 4A93L 2JA8L 2JA7L 3HOYL 3H0GL 2R93L 1Y1WL 2NVYL 1R9TL 2E2JL 1Y1VL 3RZDL 2NVXL 2YU9L 5M5WL 3S1RL 3HOUL 1K83L 5IP9L 4A3JL 3GTPL 5FLML 2WAQP 4A3KL 4A3FL 4C3JL 5M5YL 4A3GL 5M3ML 3H3VM 4BY1L
chains in the Genus database with same CATH superfamily
1CADA 4Y7NL 2JI2A 1ODHA 4A3EL 1SFOL 3HOWL 4AYBP 2A69D 1FHMA 2JA6L 2DSXA 4ME3A 1OWCA 4AI3A 3LWRB 5C4JL 4Y52L 1NXEA 3LWOB 5M3FL 3KYXA 4POGA 3RZTA 2AUSB 2XJVA 2L0ZA 2M4YA 2HVYC 3LWQB 3GTGL 5M5XL 4YWLA 2E2HL 2JI1A 1LKMA 1YK5A 2Y0SP 3B0AB 3M3YL 2PPTA 2XJTA 4ZN3B 2V3BB 1DX8A 2VL6A 1RDGA 2Z3QB 1LKPA 3GTKL 4RXNA 3A44A 4JADA 1T9QA 1TWFL 4UY81 1DVBA 4JAEA 2K2DA 4POFA 3P8BA 1LKOA 1VZIA 3S2DL 3PO3L 2WB1P 2R92L 1S2ZA 4BXXL 4A3CL 3GTML 1PFUA 3HOVL 2JA8L 5JVH1 2JA7L 1Y1WL 1IW7D 4TVMA 1R9TL 3KYVA 1Y1VL 2XJSA 4E6YA 4AHYA 5DM71 2PVXA 3HOUL 5IY0A 2A6ED 3LPEB 5IP9L 1F4LA 2ZIXA 2PYAA 4C3JL 3JR7A 5M5YL 2GMGA 3HJYB 1R0IA 4ZN1B 3PZAA 2CR8A 4BY1L 1VCXA 5FJ8L 1JYBA 1YK4A 2XJPA 2CKAA 4AR6A 5K2ME 3FKIL 3LWVB 3P2AA 1IROA 3PWFA 5IYCL 3CQZL 3M4OL 1RB9A 2Z3RB 2B63L 1RYQA 4YWMA 5DM61 3PIO1 2VUML 3VPBE 2XJUA 3B08B 1BE7A 2PVEA 1TWGL 3WWLA 3GTQL 3S17L 2E2IL 3S1ML 5MGNA 2KN9A 5MF6A 2EY4E 3QVDA 1QCVA 1RYTA 3IU3I 1PFYA 2J9UB 1LTLA 2XJQA 1WJVA 4AHZA 1TWAL 4A3BL 1I6HL 3SS2A 2NYDA 3S1NL 5MFZA 3LWPB 3PKIA 4AHWA 1ZRPA 3PL5A 8RXNA 2AQCA 4U671 3HOYL 1RWDA 3H0GL 2NVYL 3WWNB 2BE5D 4AR4A 3J7Y1 1RDVA 5AI2A 1S24A 1PZXA 2YU9L 5M5WL 2ERSA 4TPUA 3K35A 1R0HA 4A3FL 3H9CA 1IU5A 3FDJA 1BQ8A 3RYGA 6RXNA 4AI0A 3S1QL 3RZOL 1WCML 1SMUA 3S2HL 2ERJA 1B13A 3H99A 1VZHA 1VZGA 1QQTA 3MPSA 1YUZA 3RZ6A 2RFKB 2M6PA 3HOXL 5RXNA 1NNQA 2B5ID 4BY7L 1QYBA 4A3DL 5IYBL 4AI2A 3KYWA 4QIWP 3PKJA 4C2M1 2H12A 3H97A 4A3ML 1B2JA 1FHHA 2AYJA 4A3IL 1T9OA 1B71A 3K7AL 3S16L 3I4NL 2JA5L 1P7PA 1R0FA 4AR3A 1NXGA 3PO2L 1Z92B 1PFVA 3HOZL 3I4ML 2JI3A 1I50L 2QL0A 3QQCE 1TWHL 4GS7D 3S14L 4AHXA 1IRNA 5C44L 2C6BA 4XGHA 2PSMC 7RXNA 4A93L 4AR5A 5GAGc 4JAFA 3HAXC 2HR5A 1IU6A 2A6HD 2M6OA 1BFYA 4A3JL 5FLML 4A3KL 5GAEc 2CKCA 3ZG6A 4JAGA 2C6AA 2APOB 5AN9H 4AI1A 5M3ML 3KYYA 3H3VM 4C3IL 3MQKB 4K9FA 3J7Z1 3GTOL 1YV1A 1S30A 2V0EA 5IYDL 5EIOC 5EINC 2A68D 1CAAA 2NVQL 4G6BA 1R0GA 2PMZP 3MSUA 1BRFA 3S15L 5GADc 5H1Sc 3HJWB 5MFPA 5GAHc 5C3EL 3H9BA 4BBRL 2O5JD 1OWBA 1E8JA 3NFPI 5AI3A 4C3HL 2XJRA 2NVTL 2V0FA 4V196 4BBSL 1PFWA 3GTJL 1YUXA 3GTLL 4A3LL 1TWCL 1SMWA 1BQ9A 3HKZP 5C4XL 2LCQA 3PIP1 1I3QL 2RDVA 2R7ZL 3LNLA 3KYUA 1T9PA 5JVG1 2KKDA 4LHNA 4X6AL 4WFN1 1SMMA 1H7VA 5IP7L 2R93L 2E2JL 3RZDL 2NVXL 1C09A 3S1RL 1K83L 4LHLA 4XXBB 1B2OA 4B8CD 3GTPL 2WAQP 2MS3A 1R0JA 4A3GL 2M4VA 5MLC3
chains in the Genus database with same CATH topology
4Y7NL 3S1QL 3RZOL 1WCML 3S2HL 4C3IL 3GTOL 4A3EL 1SFOL 3FKIL 5IYDL 5IYCL 4AYBP 3HOWL 3CQZL 3M4OL 2JA6L 3HOXL 2B63L 2NVQL 5C4JL 4BY7L 2PMZP 5FJ8L 4Y52L 3S15L 4A3DL 5IYBL 5M3FL 4QIWP 5C3EL 4BBRL 2VUML 4C2M1 4A3ML 4C3HL 4A3IL 2NVTL 3GTGL 4BBSL 3GTJL 5M5XL 2E2HL 1TWGL 2Y0SP 3M3YL 3GTQL 3K7AL 3S17L 2E2IL 3GTLL 3S1ML 3S16L 3I4NL 2JA5L 3GTKL 4A3LL 1TWCL 1TWFL 3PO2L 3HOZL 3I4ML 3HKZP 1TWAL 5C4XL 4A3BL 1I3QL 1I6HL 2R7ZL 1I50L 1TWHL 3S14L 3S1NL 3S2DL 3PO3L 5C44L 2WB1P 2R92L 4BXXL 4X6AL 4A3CL 3GTML 3HOVL 5IP7L 4A93L 2JA8L 2JA7L 3HOYL 3H0GL 2R93L 1Y1WL 2NVYL 1R9TL 2E2JL 1Y1VL 3RZDL 2NVXL 2YU9L 5M5WL 3S1RL 3HOUL 1K83L 5IP9L 4A3JL 3GTPL 5FLML 2WAQP 4A3KL 4A3FL 4C3JL 5M5YL 4A3GL 5M3ML 3H3VM 4BY1L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Y7N L;  3S1Q L;  3RZO L;  1WCM L;  3S2H L;  4C3I L;  3GTO L;  4A3E L;  1SFO L;  3FKI L;  5IYD L;  5IYC L;  4AYB P;  3HOW L;  3CQZ L;  3M4O L;  2JA6 L;  3HOX L;  2B63 L;  2NVQ L;  5C4J L;  4BY7 L;  2PMZ P;  5FJ8 L;  4Y52 L;  3S15 L;  4A3D L;  5IYB L;  5M3F L;  4QIW P;  5C3E L;  4BBR L;  2VUM L;  4C2M 1;  4A3M L;  4C3H L;  4A3I L;  2NVT L;  3GTG L;  4BBS L;  3GTJ L;  5M5X L;  2E2H L;  1TWG L;  2Y0S P;  3M3Y L;  3GTQ L;  3K7A L;  3S17 L;  2E2I L;  3GTL L;  3S1M L;  3S16 L;  3I4N L;  2JA5 L;  3GTK L;  4A3L L;  1TWC L;  1TWF L;  3PO2 L;  3HOZ L;  3I4M L;  3HKZ P;  1TWA L;  5C4X L;  4A3B L;  1I3Q L;  1I6H L;  2R7Z L;  1I50 L;  1TWH L;  3S14 L;  3S1N L;  3S2D L;  3PO3 L;  5C44 L;  2WB1 P;  2R92 L;  4BXX L;  4X6A L;  4A3C L;  3GTM L;  3HOV L;  5IP7 L;  4A93 L;  2JA8 L;  2JA7 L;  3HOY L;  3H0G L;  2R93 L;  1Y1W L;  2NVY L;  1R9T L;  2E2J L;  1Y1V L;  3RZD L;  2NVX L;  2YU9 L;  5M5W L;  3S1R L;  3HOU L;  1K83 L;  5IP9 L;  4A3J L;  3GTP L;  5FLM L;  2WAQ P;  4A3K L;  4A3F L;  4C3J L;  5M5Y L;  4A3G L;  5M3M L;  3H3V M;  4BY1 L; 
#chains in the Genus database with same CATH topology
 1CAD A;  4Y7N L;  2JI2 A;  1ODH A;  4A3E L;  1SFO L;  3HOW L;  4AYB P;  2A69 D;  1FHM A;  2JA6 L;  2DSX A;  4ME3 A;  1OWC A;  4AI3 A;  3LWR B;  5C4J L;  4Y52 L;  1NXE A;  3LWO B;  5M3F L;  3KYX A;  4POG A;  3RZT A;  2AUS B;  2XJV A;  2L0Z A;  2M4Y A;  2HVY C;  3LWQ B;  3GTG L;  5M5X L;  4YWL A;  2E2H L;  2JI1 A;  1LKM A;  1YK5 A;  2Y0S P;  3B0A B;  3M3Y L;  2PPT A;  2XJT A;  4ZN3 B;  2V3B B;  1DX8 A;  2VL6 A;  1RDG A;  2Z3Q B;  1LKP A;  3GTK L;  4RXN A;  3A44 A;  4JAD A;  1T9Q A;  1TWF L;  4UY8 1;  1DVB A;  4JAE A;  2K2D A;  4POF A;  3P8B A;  1LKO A;  1VZI A;  3S2D L;  3PO3 L;  2WB1 P;  2R92 L;  1S2Z A;  4BXX L;  4A3C L;  3GTM L;  1PFU A;  3HOV L;  2JA8 L;  5JVH 1;  2JA7 L;  1Y1W L;  1IW7 D;  4TVM A;  1R9T L;  3KYV A;  1Y1V L;  2XJS A;  4E6Y A;  4AHY A;  5DM7 1;  2PVX A;  3HOU L;  5IY0 A;  2A6E D;  3LPE B;  5IP9 L;  1F4L A;  2ZIX A;  2PYA A;  4C3J L;  3JR7 A;  5M5Y L;  2GMG A;  3HJY B;  1R0I A;  4ZN1 B;  3PZA A;  2CR8 A;  4BY1 L;  1VCX A;  5FJ8 L;  1JYB A;  1YK4 A;  2XJP A;  2CKA A;  4AR6 A;  5K2M E;  3FKI L;  3LWV B;  3P2A A;  1IRO A;  3PWF A;  5IYC L;  3CQZ L;  3M4O L;  1RB9 A;  2Z3R B;  2B63 L;  1RYQ A;  4YWM A;  5DM6 1;  3PIO 1;  2VUM L;  3VPB E;  2XJU A;  3B08 B;  1BE7 A;  2PVE A;  1TWG L;  3WWL A;  3GTQ L;  3S17 L;  2E2I L;  3S1M L;  5MGN A;  2KN9 A;  5MF6 A;  2EY4 E;  3QVD A;  1QCV A;  1RYT A;  3IU3 I;  1PFY A;  2J9U B;  1LTL A;  2XJQ A;  1WJV A;  4AHZ A;  1TWA L;  4A3B L;  1I6H L;  3SS2 A;  2NYD A;  3S1N L;  5MFZ A;  3LWP B;  3PKI A;  4AHW A;  1ZRP A;  3PL5 A;  8RXN A;  2AQC A;  4U67 1;  3HOY L;  1RWD A;  3H0G L;  2NVY L;  3WWN B;  2BE5 D;  4AR4 A;  3J7Y 1;  1RDV A;  5AI2 A;  1S24 A;  1PZX A;  2YU9 L;  5M5W L;  2ERS A;  4TPU A;  3K35 A;  1R0H A;  4A3F L;  3H9C A;  1IU5 A;  3FDJ A;  1BQ8 A;  3RYG A;  6RXN A;  4AI0 A;  3S1Q L;  3RZO L;  1WCM L;  1SMU A;  3S2H L;  2ERJ A;  1B13 A;  3H99 A;  1VZH A;  1VZG A;  1QQT A;  3MPS A;  1YUZ A;  3RZ6 A;  2RFK B;  2M6P A;  3HOX L;  5RXN A;  1NNQ A;  2B5I D;  4BY7 L;  1QYB A;  4A3D L;  5IYB L;  4AI2 A;  3KYW A;  4QIW P;  3PKJ A;  4C2M 1;  2H12 A;  3H97 A;  4A3M L;  1B2J A;  1FHH A;  2AYJ A;  4A3I L;  1T9O A;  1B71 A;  3K7A L;  3S16 L;  3I4N L;  2JA5 L;  1P7P A;  1R0F A;  4AR3 A;  1NXG A;  3PO2 L;  1Z92 B;  1PFV A;  3HOZ L;  3I4M L;  2JI3 A;  1I50 L;  2QL0 A;  3QQC E;  1TWH L;  4GS7 D;  3S14 L;  4AHX A;  1IRN A;  5C44 L;  2C6B A;  4XGH A;  2PSM C;  7RXN A;  4A93 L;  4AR5 A;  5GAG c;  4JAF A;  3HAX C;  2HR5 A;  1IU6 A;  2A6H D;  2M6O A;  1BFY A;  4A3J L;  5FLM L;  4A3K L;  5GAE c;  2CKC A;  3ZG6 A;  4JAG A;  2C6A A;  2APO B;  5AN9 H;  4AI1 A;  5M3M L;  3KYY A;  3H3V M;  4C3I L;  3MQK B;  4K9F A;  3J7Z 1;  3GTO L;  1YV1 A;  1S30 A;  2V0E A;  5IYD L;  5EIO C;  5EIN C;  2A68 D;  1CAA A;  2NVQ L;  4G6B A;  1R0G A;  2PMZ P;  3MSU A;  1BRF A;  3S15 L;  5GAD c;  5H1S c;  3HJW B;  5MFP A;  5GAH c;  5C3E L;  3H9B A;  4BBR L;  2O5J D;  1OWB A;  1E8J A;  3NFP I;  5AI3 A;  4C3H L;  2XJR A;  2NVT L;  2V0F A;  4V19 6;  4BBS L;  1PFW A;  3GTJ L;  1YUX A;  3GTL L;  4A3L L;  1TWC L;  1SMW A;  1BQ9 A;  3HKZ P;  5C4X L;  2LCQ A;  3PIP 1;  1I3Q L;  2RDV A;  2R7Z L;  3LNL A;  3KYU A;  1T9P A;  5JVG 1;  2KKD A;  4LHN A;  4X6A L;  4WFN 1;  1SMM A;  1H7V A;  5IP7 L;  2R93 L;  2E2J L;  3RZD L;  2NVX L;  1C09 A;  3S1R L;  1K83 L;  4LHL A;  4XXB B;  1B2O A;  4B8C D;  3GTP L;  2WAQ P;  2MS3 A;  1R0J A;  4A3G L;  2M4V A;  5MLC 3; 
#chains in the Genus database with same CATH homology
 4Y7N L;  3S1Q L;  3RZO L;  1WCM L;  3S2H L;  4C3I L;  3GTO L;  4A3E L;  1SFO L;  3FKI L;  5IYD L;  5IYC L;  4AYB P;  3HOW L;  3CQZ L;  3M4O L;  2JA6 L;  3HOX L;  2B63 L;  2NVQ L;  5C4J L;  4BY7 L;  2PMZ P;  5FJ8 L;  4Y52 L;  3S15 L;  4A3D L;  5IYB L;  5M3F L;  4QIW P;  5C3E L;  4BBR L;  2VUM L;  4C2M 1;  4A3M L;  4C3H L;  4A3I L;  2NVT L;  3GTG L;  4BBS L;  3GTJ L;  5M5X L;  2E2H L;  1TWG L;  2Y0S P;  3M3Y L;  3GTQ L;  3K7A L;  3S17 L;  2E2I L;  3GTL L;  3S1M L;  3S16 L;  3I4N L;  2JA5 L;  3GTK L;  4A3L L;  1TWC L;  1TWF L;  3PO2 L;  3HOZ L;  3I4M L;  3HKZ P;  1TWA L;  5C4X L;  4A3B L;  1I3Q L;  1I6H L;  2R7Z L;  1I50 L;  1TWH L;  3S14 L;  3S1N L;  3S2D L;  3PO3 L;  5C44 L;  2WB1 P;  2R92 L;  4BXX L;  4X6A L;  4A3C L;  3GTM L;  3HOV L;  5IP7 L;  4A93 L;  2JA8 L;  2JA7 L;  3HOY L;  3H0G L;  2R93 L;  1Y1W L;  2NVY L;  1R9T L;  2E2J L;  1Y1V L;  3RZD L;  2NVX L;  2YU9 L;  5M5W L;  3S1R L;  3HOU L;  1K83 L;  5IP9 L;  4A3J L;  3GTP L;  5FLM L;  2WAQ P;  4A3K L;  4A3F L;  4C3J L;  5M5Y L;  4A3G L;  5M3M L;  3H3V M;  4BY1 L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...