4AR4A

Neutron crystallographic structure of the reduced form perdeuterated pyrococcus furiosus rubredoxin to 1.38 angstrom resolution.
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
54
structure length
54
Chain Sequence
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S2 (11-13)S3 (48-51)TIV1 (5-8)TI2 (13-16)TI3 (14-17)TII1 (24-27)3H2 (29-31)3H1 (19-21)TI4 (33-36)3H3 (45-47)TIV2 (38-41)Updating...
connected with : NaN
molecule tags Electron transport
source organism Pyrococcus furiosus
publication title Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes.
pubmed doi rcsb
molecule keywords RUBREDOXIN
total genus 10
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2012-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 4ar4A00
1RWDA 2K2DA 1RDVA 1B71A 2GMGA 2QL0A 3RYGA 1YV1A 1SMWA 1NNQA 3SS2A 2PVEA 6RXNA 2KKDA 1R0HA 1R0GA 1QCVA 1YUXA 1BQ9A 2M4YA 4TPUA 1YUZA 1S2ZA 2VL6A 1IROA 1BE7A 2HR5A 1BFYA 1R0IA 4POGA 1H7VA 2PVXA 3PZAA 1FHMA 4RXNA 1VCXA 1B2JA 7RXNA 1DX8A 1SMUA 1B2OA 1T9OA 3A44A 1C09A 1YK4A 1CAAA 8RXNA 3KYUA 5RXNA 2KN9A 1S24A 2LCQA 4AR3A 1LKPA 4YWLA 1BQ8A 5AI2A 1LKMA 3MPSA 3PWFA 1YK5A 1IRNA 1LKOA 2PYAA 1S30A 1T9QA 3QVDA 3KYYA 4K9FA 1FHHA 3KYXA 1IU6A 2DSXA 5AI3A 3RZ6A 1DVBA 1T9PA 1JYBA 2MS3A 1BRFA 1CADA 1QYBA 1RYTA 1SMMA 1B13A 5IY0A 4ME3A 1ZRPA 4AR5A 3KYVA 1R0FA 1E8JA 3RZTA 2RDVA 4YWMA 1IU5A 2V3BB 3KYWA 4AR4A 4POFA 4AR6A 1RDGA 1R0JA 1RB9A 1LTLA
chains in the Genus database with same CATH superfamily
3M4OL 2GMGA 3I4ML 2CR8A 3RYGA 1TWGL 4AHXA 4E6YA 3HOWL 5M3FL 2WB1P 3PKIA 3GTLL 4TPUA 2AYJA 3HOVL 5MGNA 2XJTA 3HOXL 2YU9L 2JI3A 3K35A 3J7Z1 1H7VA 5M5XL 3PZAA 2ERSA 2VUML 1NXEA 1SMUA 4A3ML 4LHNA 3HOUL 3PL5A 4A3DL 1C09A 5MF6A 1CAAA 4AI3A 8RXNA 4Y7NL 2NVQL 2C6AA 3H9CA 2HVYC 5MFZA 2KN9A 4A3JL 2R92L 1K83L 1PFWA 5EIOC 4C3JL 1BQ8A 1PFVA 2ERJA 5IP9L 2E2HL 2AUSB 2R93L 1TWAL 3KYYA 3LWRB 3J7Y1 3GTGL 1PZXA 1DVBA 5M5YL 3H3VM 1SMMA 1Z92B 1WJVA 1E8JA 4AI2A 3HOZL 3S1NL 4AHYA 2A69D 1WCML 2JI2A 3WWNB 3GTKL 4ZN1B 4QIWP 4C3HL 1RWDA 2V0FA 1RDVA 3VPBE 3LNLA 4JAGA 3LWOB 1NNQA 2E2JL 3LWQB 2A6HD 6RXNA 2KKDA 4A3CL 5AN9H 2JI1A 5FJ8L 4A3LL 4C3IL 1S2ZA 5IYCL 2VL6A 5MFPA 1I6HL 1BE7A 4G6BA 1R0IA 4V196 3GTPL 2XJRA 3P8BA 5DM71 5M3ML 7RXNA 1TWHL 1Y1VL 2XJSA 5EINC 5GAEc 5MLC3 4U671 1T9OA 3A44A 4BBSL 5C4JL 4JADA 2PMZP 4A3GL 1VZIA 3JR7A 2XJPA 3S15L 4GS7D 3GTJL 1LKPA 5H1Sc 2Y0SP 5AI2A 3MPSA 2M6OA 3RZOL 2EY4E 4AHWA 3PWFA 2APOB 5FLML 3LWPB 5JVH1 4UY81 1YK5A 1ODHA 1LKOA 3S1ML 5JVG1 1S30A 1PFUA 3QVDA 4A3FL 2XJVA 2E2IL 1FHHA 3KYXA 1T9PA 1JYBA 3S2DL 4JAEA 1QYBA 1B13A 2M6PA 2BE5D 2PPTA 4ME3A 2Z3QB 2V0EA 3MSUA 4AR5A 3KYVA 4TVMA 4YWMA 3KYWA 3S1QL 4AR6A 2JA7L 4A93L 2ZIXA 3ZG6A 2K2DA 1B71A 2QL0A 2WAQP 3SS2A 4BY1L 3FKIL 3GTML 4ZN3B 3GTQL 2A68D 1VZHA 4A3EL 1QCVA 1YUXA 1BQ9A 2M4YA 2XJQA 3IU3I 5DM61 1YUZA 5IP7L 3H0GL 4AHZA 3PKJA 4BBRL 1SFOL 3PIO1 4X6AL 1DX8A 2M4VA 1B2OA 5C44L 1IW7D 2Z3RB 3HJWB 3M3YL 1TWFL 3KYUA 2H12A 3K7AL 5RXNA 2CKCA 2LCQA 3PO2L 4XXBB 1RYQA 4Y52L 4JAFA 4AR3A 4YWLA 1I50L 5C3EL 3B08B 4AI1A 3P2AA 3FDJA 2JA5L 2PYAA 2B63L 2AQCA 4A3KL 3B0AB 1IU6A 4WFN1 4LHLA 1BRFA 3S14L 1RYTA 1CADA 5GAHc 3H9BA 5IY0A 2CKAA 1ZRPA 4B8CD 2C6BA 4POFA 2O5JD 1R0JA 1TWCL 1R9TL 2JA6L 2NVXL 1YV1A 1SMWA 2NVYL 3GTOL 3LWVB 3S1RL 2PVEA 4A3IL 1R0HA 1R0GA 2B5ID 3HKZP 2JA8L 2J9UB 3MQKB 1IROA 2HR5A 1BFYA 1OWCA 2NVTL 1NXGA 1PFYA 1OWBA 4POGA 2PVXA 3S16L 1FHMA 4RXNA 4AI0A 1VCXA 1B2JA 1P7PA 3WWLA 3S2HL 2RFKB 2PSMC 1YK4A 3H97A 4C2M1 1QQTA 1F4LA 4BY7L 4A3BL 2XJUA 5GAGc 1S24A 1I3QL 5K2ME 1Y1WL 3LPEB 3HAXC 3PIP1 5IYBL 5M5WL 1LKMA 3RZDL 5C4XL 4AYBP 3S17L 3CQZL 2R7ZL 1IRNA 2A6ED 1T9QA 4K9FA 3HOYL 2NYDA 2DSXA 1VZGA 5AI3A 2L0ZA 4XGHA 3RZ6A 5GADc 3QQCE 2MS3A 3PO3L 3NFPI 3I4NL 4BXXL 1R0FA 3RZTA 2RDVA 1IU5A 2V3BB 4AR4A 3H99A 3HJYB 1RDGA 5IYDL 1RB9A 1LTLA
chains in the Genus database with same CATH topology
2ZIXA 1RWDA 3ZG6A 2V0FA 2K2DA 1RDVA 1B71A 2GMGA 2QL0A 3VPBE 2CR8A 3RYGA 1YV1A 3LNLA 4JAGA 1SMWA 1NNQA 3SS2A 4ZN3B 4AHXA 2A6HD 2PVEA 6RXNA 2KKDA 1R0HA 2A68D 4E6YA 1R0GA 2B5ID 1VZHA 1QCVA 1YUXA 1BQ9A 2M4YA 3PKIA 5AN9H 2XJQA 4TPUA 3IU3I 2AYJA 2JI1A 5DM61 1YUZA 2J9UB 1S2ZA 5MGNA 2VL6A 5MFPA 2XJTA 1IROA 1BE7A 4G6BA 2HR5A 1BFYA 1OWCA 1NXGA 1R0IA 4V196 2JI3A 1OWBA 3K35A 4AHZA 3J7Z1 4POGA 2PVXA 3PKJA 1H7VA 2XJRA 1FHMA 3PZAA 4RXNA 2ERSA 1VCXA 3P8BA 4AI0A 1B2JA 5DM71 3PIO1 1NXEA 7RXNA 3WWLA 2XJSA 1SMUA 1DX8A 4LHNA 2M4VA 1B2OA 5EINC 5GAEc 5MLC3 4U671 1T9OA 1IW7D 2Z3RB 3A44A 2PSMC 1C09A 1YK4A 5MF6A 1CAAA 4AI3A 8RXNA 4JADA 3KYUA 2C6AA 2H12A 1VZIA 5MFZA 2KN9A 5RXNA 2XJUA 2CKCA 5GAGc 1S24A 5K2ME 2LCQA 2XJPA 3LPEB 1RYQA 4GS7D 4XXBB 4JAFA 5EIOC 4AR3A 1LKPA 4YWLA 3PIP1 3B08B 1BQ8A 4AI1A 5AI2A 5H1Sc 1LKMA 2ERJA 3MPSA 2M6OA 3P2AA 4AHWA 3PWFA 5JVH1 4UY81 1YK5A 1IRNA 1ODHA 1LKOA 2PYAA 5JVG1 2A6ED 1S30A 1T9QA 3KYYA 3B0AB 3QVDA 4K9FA 3J7Y1 2XJVA 1FHHA 2NYDA 3KYXA 1IU6A 2DSXA 1VZGA 4WFN1 5AI3A 2L0ZA 4XGHA 1DVBA 3RZ6A 1T9PA 1JYBA 5GADc 3QQCE 2MS3A 4LHLA 4JAEA 1BRFA 3NFPI 1CADA 1QYBA 1RYTA 1SMMA 5GAHc 1B13A 1Z92B 1WJVA 2M6PA 2BE5D 2PPTA 5IY0A 2CKAA 4ME3A 2Z3QB 1ZRPA 2V0EA 3MSUA 3KYVA 1R0FA 4AI2A 4AR5A 1E8JA 3RZTA 4AHYA 2RDVA 4B8CD 2C6BA 4TVMA 2A69D 4YWMA 1IU5A 2V3BB 3KYWA 4AR4A 4POFA 2JI2A 4AR6A 3WWNB 1RDGA 2O5JD 4ZN1B 1R0JA 1RB9A 1LTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RWD A;  2K2D A;  1RDV A;  1B71 A;  2GMG A;  2QL0 A;  3RYG A;  1YV1 A;  1SMW A;  1NNQ A;  3SS2 A;  2PVE A;  6RXN A;  2KKD A;  1R0H A;  1R0G A;  1QCV A;  1YUX A;  1BQ9 A;  2M4Y A;  4TPU A;  1YUZ A;  1S2Z A;  2VL6 A;  1IRO A;  1BE7 A;  2HR5 A;  1BFY A;  1R0I A;  4POG A;  1H7V A;  2PVX A;  3PZA A;  1FHM A;  4RXN A;  1VCX A;  1B2J A;  7RXN A;  1DX8 A;  1SMU A;  1B2O A;  1T9O A;  3A44 A;  1C09 A;  1YK4 A;  1CAA A;  8RXN A;  3KYU A;  5RXN A;  2KN9 A;  1S24 A;  2LCQ A;  4AR3 A;  1LKP A;  4YWL A;  1BQ8 A;  5AI2 A;  1LKM A;  3MPS A;  3PWF A;  1YK5 A;  1IRN A;  1LKO A;  2PYA A;  1S30 A;  1T9Q A;  3QVD A;  3KYY A;  4K9F A;  1FHH A;  3KYX A;  1IU6 A;  2DSX A;  5AI3 A;  3RZ6 A;  1DVB A;  1T9P A;  1JYB A;  2MS3 A;  1BRF A;  1CAD A;  1QYB A;  1RYT A;  1SMM A;  1B13 A;  5IY0 A;  4ME3 A;  1ZRP A;  4AR5 A;  3KYV A;  1R0F A;  1E8J A;  3RZT A;  2RDV A;  4YWM A;  1IU5 A;  2V3B B;  3KYW A;  4AR4 A;  4POF A;  4AR6 A;  1RDG A;  1R0J A;  1RB9 A;  1LTL A; 
#chains in the Genus database with same CATH topology
 3M4O L;  2GMG A;  3I4M L;  2CR8 A;  3RYG A;  1TWG L;  4AHX A;  4E6Y A;  3HOW L;  5M3F L;  2WB1 P;  3PKI A;  3GTL L;  4TPU A;  2AYJ A;  3HOV L;  5MGN A;  2XJT A;  3HOX L;  2YU9 L;  2JI3 A;  3K35 A;  3J7Z 1;  1H7V A;  5M5X L;  3PZA A;  2ERS A;  2VUM L;  1NXE A;  1SMU A;  4A3M L;  4LHN A;  3HOU L;  3PL5 A;  4A3D L;  1C09 A;  5MF6 A;  1CAA A;  4AI3 A;  8RXN A;  4Y7N L;  2NVQ L;  2C6A A;  3H9C A;  2HVY C;  5MFZ A;  2KN9 A;  4A3J L;  2R92 L;  1K83 L;  1PFW A;  5EIO C;  4C3J L;  1BQ8 A;  1PFV A;  2ERJ A;  5IP9 L;  2E2H L;  2AUS B;  2R93 L;  1TWA L;  3KYY A;  3LWR B;  3J7Y 1;  3GTG L;  1PZX A;  1DVB A;  5M5Y L;  3H3V M;  1SMM A;  1Z92 B;  1WJV A;  1E8J A;  4AI2 A;  3HOZ L;  3S1N L;  4AHY A;  2A69 D;  1WCM L;  2JI2 A;  3WWN B;  3GTK L;  4ZN1 B;  4QIW P;  4C3H L;  1RWD A;  2V0F A;  1RDV A;  3VPB E;  3LNL A;  4JAG A;  3LWO B;  1NNQ A;  2E2J L;  3LWQ B;  2A6H D;  6RXN A;  2KKD A;  4A3C L;  5AN9 H;  2JI1 A;  5FJ8 L;  4A3L L;  4C3I L;  1S2Z A;  5IYC L;  2VL6 A;  5MFP A;  1I6H L;  1BE7 A;  4G6B A;  1R0I A;  4V19 6;  3GTP L;  2XJR A;  3P8B A;  5DM7 1;  5M3M L;  7RXN A;  1TWH L;  1Y1V L;  2XJS A;  5EIN C;  5GAE c;  5MLC 3;  4U67 1;  1T9O A;  3A44 A;  4BBS L;  5C4J L;  4JAD A;  2PMZ P;  4A3G L;  1VZI A;  3JR7 A;  2XJP A;  3S15 L;  4GS7 D;  3GTJ L;  1LKP A;  5H1S c;  2Y0S P;  5AI2 A;  3MPS A;  2M6O A;  3RZO L;  2EY4 E;  4AHW A;  3PWF A;  2APO B;  5FLM L;  3LWP B;  5JVH 1;  4UY8 1;  1YK5 A;  1ODH A;  1LKO A;  3S1M L;  5JVG 1;  1S30 A;  1PFU A;  3QVD A;  4A3F L;  2XJV A;  2E2I L;  1FHH A;  3KYX A;  1T9P A;  1JYB A;  3S2D L;  4JAE A;  1QYB A;  1B13 A;  2M6P A;  2BE5 D;  2PPT A;  4ME3 A;  2Z3Q B;  2V0E A;  3MSU A;  4AR5 A;  3KYV A;  4TVM A;  4YWM A;  3KYW A;  3S1Q L;  4AR6 A;  2JA7 L;  4A93 L;  2ZIX A;  3ZG6 A;  2K2D A;  1B71 A;  2QL0 A;  2WAQ P;  3SS2 A;  4BY1 L;  3FKI L;  3GTM L;  4ZN3 B;  3GTQ L;  2A68 D;  1VZH A;  4A3E L;  1QCV A;  1YUX A;  1BQ9 A;  2M4Y A;  2XJQ A;  3IU3 I;  5DM6 1;  1YUZ A;  5IP7 L;  3H0G L;  4AHZ A;  3PKJ A;  4BBR L;  1SFO L;  3PIO 1;  4X6A L;  1DX8 A;  2M4V A;  1B2O A;  5C44 L;  1IW7 D;  2Z3R B;  3HJW B;  3M3Y L;  1TWF L;  3KYU A;  2H12 A;  3K7A L;  5RXN A;  2CKC A;  2LCQ A;  3PO2 L;  4XXB B;  1RYQ A;  4Y52 L;  4JAF A;  4AR3 A;  4YWL A;  1I50 L;  5C3E L;  3B08 B;  4AI1 A;  3P2A A;  3FDJ A;  2JA5 L;  2PYA A;  2B63 L;  2AQC A;  4A3K L;  3B0A B;  1IU6 A;  4WFN 1;  4LHL A;  1BRF A;  3S14 L;  1RYT A;  1CAD A;  5GAH c;  3H9B A;  5IY0 A;  2CKA A;  1ZRP A;  4B8C D;  2C6B A;  4POF A;  2O5J D;  1R0J A;  1TWC L;  1R9T L;  2JA6 L;  2NVX L;  1YV1 A;  1SMW A;  2NVY L;  3GTO L;  3LWV B;  3S1R L;  2PVE A;  4A3I L;  1R0H A;  1R0G A;  2B5I D;  3HKZ P;  2JA8 L;  2J9U B;  3MQK B;  1IRO A;  2HR5 A;  1BFY A;  1OWC A;  2NVT L;  1NXG A;  1PFY A;  1OWB A;  4POG A;  2PVX A;  3S16 L;  1FHM A;  4RXN A;  4AI0 A;  1VCX A;  1B2J A;  1P7P A;  3WWL A;  3S2H L;  2RFK B;  2PSM C;  1YK4 A;  3H97 A;  4C2M 1;  1QQT A;  1F4L A;  4BY7 L;  4A3B L;  2XJU A;  5GAG c;  1S24 A;  1I3Q L;  5K2M E;  1Y1W L;  3LPE B;  3HAX C;  3PIP 1;  5IYB L;  5M5W L;  1LKM A;  3RZD L;  5C4X L;  4AYB P;  3S17 L;  3CQZ L;  2R7Z L;  1IRN A;  2A6E D;  1T9Q A;  4K9F A;  3HOY L;  2NYD A;  2DSX A;  1VZG A;  5AI3 A;  2L0Z A;  4XGH A;  3RZ6 A;  5GAD c;  3QQC E;  2MS3 A;  3PO3 L;  3NFP I;  3I4N L;  4BXX L;  1R0F A;  3RZT A;  2RDV A;  1IU5 A;  2V3B B;  4AR4 A;  3H99 A;  3HJY B;  1RDG A;  5IYD L;  1RB9 A;  1LTL A; 
#chains in the Genus database with same CATH homology
 2ZIX A;  1RWD A;  3ZG6 A;  2V0F A;  2K2D A;  1RDV A;  1B71 A;  2GMG A;  2QL0 A;  3VPB E;  2CR8 A;  3RYG A;  1YV1 A;  3LNL A;  4JAG A;  1SMW A;  1NNQ A;  3SS2 A;  4ZN3 B;  4AHX A;  2A6H D;  2PVE A;  6RXN A;  2KKD A;  1R0H A;  2A68 D;  4E6Y A;  1R0G A;  2B5I D;  1VZH A;  1QCV A;  1YUX A;  1BQ9 A;  2M4Y A;  3PKI A;  5AN9 H;  2XJQ A;  4TPU A;  3IU3 I;  2AYJ A;  2JI1 A;  5DM6 1;  1YUZ A;  2J9U B;  1S2Z A;  5MGN A;  2VL6 A;  5MFP A;  2XJT A;  1IRO A;  1BE7 A;  4G6B A;  2HR5 A;  1BFY A;  1OWC A;  1NXG A;  1R0I A;  4V19 6;  2JI3 A;  1OWB A;  3K35 A;  4AHZ A;  3J7Z 1;  4POG A;  2PVX A;  3PKJ A;  1H7V A;  2XJR A;  1FHM A;  3PZA A;  4RXN A;  2ERS A;  1VCX A;  3P8B A;  4AI0 A;  1B2J A;  5DM7 1;  3PIO 1;  1NXE A;  7RXN A;  3WWL A;  2XJS A;  1SMU A;  1DX8 A;  4LHN A;  2M4V A;  1B2O A;  5EIN C;  5GAE c;  5MLC 3;  4U67 1;  1T9O A;  1IW7 D;  2Z3R B;  3A44 A;  2PSM C;  1C09 A;  1YK4 A;  5MF6 A;  1CAA A;  4AI3 A;  8RXN A;  4JAD A;  3KYU A;  2C6A A;  2H12 A;  1VZI A;  5MFZ A;  2KN9 A;  5RXN A;  2XJU A;  2CKC A;  5GAG c;  1S24 A;  5K2M E;  2LCQ A;  2XJP A;  3LPE B;  1RYQ A;  4GS7 D;  4XXB B;  4JAF A;  5EIO C;  4AR3 A;  1LKP A;  4YWL A;  3PIP 1;  3B08 B;  1BQ8 A;  4AI1 A;  5AI2 A;  5H1S c;  1LKM A;  2ERJ A;  3MPS A;  2M6O A;  3P2A A;  4AHW A;  3PWF A;  5JVH 1;  4UY8 1;  1YK5 A;  1IRN A;  1ODH A;  1LKO A;  2PYA A;  5JVG 1;  2A6E D;  1S30 A;  1T9Q A;  3KYY A;  3B0A B;  3QVD A;  4K9F A;  3J7Y 1;  2XJV A;  1FHH A;  2NYD A;  3KYX A;  1IU6 A;  2DSX A;  1VZG A;  4WFN 1;  5AI3 A;  2L0Z A;  4XGH A;  1DVB A;  3RZ6 A;  1T9P A;  1JYB A;  5GAD c;  3QQC E;  2MS3 A;  4LHL A;  4JAE A;  1BRF A;  3NFP I;  1CAD A;  1QYB A;  1RYT A;  1SMM A;  5GAH c;  1B13 A;  1Z92 B;  1WJV A;  2M6P A;  2BE5 D;  2PPT A;  5IY0 A;  2CKA A;  4ME3 A;  2Z3Q B;  1ZRP A;  2V0E A;  3MSU A;  3KYV A;  1R0F A;  4AI2 A;  4AR5 A;  1E8J A;  3RZT A;  4AHY A;  2RDV A;  4B8C D;  2C6B A;  4TVM A;  2A69 D;  4YWM A;  1IU5 A;  2V3B B;  3KYW A;  4AR4 A;  4POF A;  2JI2 A;  4AR6 A;  3WWN B;  1RDG A;  2O5J D;  4ZN1 B;  1R0J A;  1RB9 A;  1LTL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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