5DM7 | Genus

Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	3
sequence length	54
structure length	54
Chain Sequence	AAAGAAPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAAHVVFAAAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A. pubmed doi rcsb
molecule keywords	50S ribosomal protein L1
total genus	3
structure length	54
sequence length	54
ec nomenclature
pdb deposition date	2015-09-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.28.120	Mainly Beta	Single Sheet	Rubrerythrin, domain 2	Rubrerythrin, domain 2	5dm7100

5JVH1 5JVG1 3J7Z1 3PIO1 5GAEc 4UY81 5GAGc 4V196 5DM61 5DM71 3J7Y1 5GAHc 4U671 5MLC3 3PIP1 4WFN1 5H1Sc 5GADc
chains in the Genus database with same CATH superfamily

3SS2A 1IROA 4AI2A 5FLML 4A3KL 2A6ED 2XJPA 3GTQL 4B8CD 4XXBB 5JVH1 1B2OA 2NVQL 1PFUA 4ZN3B 4A3CL 3PL5A 1LKPA 1I3QL 3FKIL 4YWMA 3LPEB 5MF6A 2JA7L 2LCQA 1SFOL 1R0JA 5DM71 4POFA 1CAAA 4LHNA 2XJSA 4G6BA 5GAHc 2Z3QB 3H9BA 2JA6L 3GTKL 1RDVA 3WWLA 3GTOL 1QCVA 1BE7A 4QIWP 1BRFA 5IYDL 3GTML 4X6AL 1WCML 4JAGA 3H97A 3HOZL 2DSXA 4WFN1 2A68D 2J9UB 2O5JD 2R93L 5AN9H 3H9CA 1DVBA 5IP9L 1SMWA 1IRNA 3HJWB 2K2DA 5IP7L 2WB1P 3PO3L 1TWGL 1E8JA 1T9PA 1QQTA 4LHLA 2L0ZA 5M5XL 2M4VA 3M3YL 1I6HL 1FHMA 4GS7D 6RXNA 3S17L 4RXNA 1IU5A 3B08B 1SMMA 4Y52L 5MGNA 3S16L 4A3LL 1RYTA 5AI2A 2CKCA 3VPBE 3WWNB 5JVG1 4TPUA 1YK5A 2WAQP 2XJTA 2AUSB 1VZIA 3HOVL 3ZG6A 2CR8A 4TVMA 3GTLL 1P7PA 3GTPL 1R9TL 3GTJL 4ZN1B 1TWAL 3LWOB 1ZRPA 3M4OL 1JYBA 3S2DL 4BBSL 1T9OA 3J7Z1 3LWQB 3KYXA 4K9FA 3RYGA 5M5WL 4JAFA 1RWDA 2RDVA 2Y0SP 3MQKB 3PKIA 1T9QA 4A3EL 4BBRL 1C09A 4C2M1 2VL6A 2RFKB 4C3JL 3PWFA 1B13A 2R92L 5M5YL 4AR6A 2MS3A 5GAGc 1B2JA 5C4JL 4A3ML 3PIP1 2NYDA 2AQCA 4UY81 1BQ8A 1R0GA 2ERJA 2NVTL 3HAXC 1Y1VL 1LKMA 3KYYA 2YU9L 4AI1A 2M4YA 4Y7NL 2PVXA 1OWBA 2V0EA 3P8BA 2B63L 3I4NL 5EINC 5GAEc 1IU6A 3J7Y1 2GMGA 2PMZP 4AR3A 3S15L 1I50L 3PIO1 1VZGA 1Y1WL 2EY4E 1B71A 1BQ9A 2HR5A 1TWFL 1K83L 3GTGL 4YWLA 3B0AB 3RZDL 5C3EL 3HOWL 3CQZL 4A3BL 4AR5A 4AR4A 1YUXA 1FHHA 3H99A 4ME3A 3HJYB 2KN9A 3S1QL 3K35A 1S24A 2JI3A 1WJVA 2VUML 3PKJA 3S14L 5IYBL 2AYJA 4A93L 5DM61 4BY7L 1Z92B 1BFYA 2M6PA 2QL0A 3RZTA 1PZXA 2PVEA 1YV1A 7RXNA 4AHWA 1RDGA 4A3JL 4JAEA 2B5ID 1DX8A 5FJ8L 2NVYL 3I4ML 3LWRB 3LWPB 4AHZA 3MPSA 5EIOC 4POGA 3K7AL 2NVXL 3HOUL 2V3BB 5GADc 3LNLA 1CADA 4JADA 3RZOL 3P2AA 5C4XL 5K2ME 2XJUA 2XJQA 3IU3I 5H1Sc 4AYBP 1ODHA 3HKZP 5MFZA 4A3IL 2E2HL 3S1RL 2E2IL 5MFPA 3MSUA 4U671 2C6AA 3PO2L 1LTLA 1VCXA 2PSMC 2JI2A 2V0FA 3PZAA 2ZIXA 2Z3RB 2XJRA 4XGHA 4AI0A 4BY1L 3H3VM 1F4LA 5M3FL 2JI1A 4AI3A 4C3IL 4BXXL 4E6YA 3A44A 3HOYL 2ERSA 2C6BA 2JA8L 5IYCL 8RXNA 1SMUA 3KYUA 1IW7D 4A3DL 1NNQA 5M3ML 2KKDA 1NXEA 2BE5D 3FDJA 1S30A 1TWCL 1H7VA 5MLC3 1VZHA 1R0FA 1RYQA 2APOB 3RZ6A 1LKOA 2CKAA 5IY0A 1R0HA 3QVDA 5C44L 1QYBA 2A6HD 2XJVA 3QQCE 5RXNA 2JA5L 3H0GL 2H12A 2R7ZL 3KYWA 2E2JL 3HOXL 1YK4A 4V196 3KYVA 2A69D 2HVYC 1YUZA 4AHXA 4A3FL 1PFVA 4C3HL 1OWCA 5AI3A 3S1ML 1TWHL 3JR7A 2PYAA 4A3GL 2M6OA 1S2ZA 3LWVB 3S1NL 2PPTA 3S2HL 1NXGA 1R0IA 1PFWA 1PFYA 3NFPI 1RB9A 4AHYA
chains in the Genus database with same CATH topology

3SS2A 1IROA 4AI2A 5MGNA 2XJRA 4XGHA 4AI0A 4YWLA 1RYTA 3B0AB 5AI2A 2CKCA 3VPBE 3WWNB 5JVG1 2JI1A 2A6ED 4AI3A 4TPUA 1YK5A 4AR5A 2XJTA 4AR4A 1YUXA 1VZIA 1FHHA 3ZG6A 2XJPA 4ME3A 2CR8A 2KN9A 4TVMA 4B8CD 4E6YA 4XXBB 3A44A 3K35A 1S24A 5JVH1 1B2OA 2JI3A 1WJVA 2ERSA 4ZN3B 1LKPA 2C6BA 3PKJA 8RXNA 1SMUA 3KYUA 4ZN1B 2AYJA 1ZRPA 1JYBA 5DM61 1IW7D 1Z92B 1BFYA 2M6PA 2QL0A 3RZTA 1NNQA 2PVEA 7RXNA 1YV1A 1T9OA 3J7Z1 2KKDA 4AHWA 1RDGA 1NXEA 4YWMA 3LPEB 2BE5D 5MF6A 3B08B 2LCQA 3KYXA 4K9FA 3RYGA 4JAEA 1R0JA 4POFA 5DM71 4JAFA 1RWDA 2RDVA 2B5ID 1DX8A 1CAAA 4LHNA 2XJSA 1S30A 3PKIA 4G6BA 1T9QA 1H7VA 5GAHc 5MLC3 1VZHA 1R0FA 2Z3QB 1C09A 1RYQA 3RZ6A 2VL6A 1RDVA 3WWLA 1QCVA 1LKOA 3PWFA 2CKAA 5IY0A 1B13A 1BE7A 1R0HA 3QVDA 1QYBA 4AHZA 1BRFA 3MPSA 5EIOC 4POGA 2A6HD 2V3BB 2XJVA 4AR6A 4JAGA 5GADc 2MS3A 3LNLA 3QQCE 5RXNA 1CADA 5GAGc 2H12A 1B2JA 2DSXA 3KYWA 3PIP1 4JADA 3P2AA 4WFN1 2NYDA 1YK4A 2A68D 4UY81 4V196 1BQ8A 2J9UB 2ERJA 3KYVA 1R0GA 5K2ME 2O5JD 5AN9H 2XJUA 2A69D 2XJQA 3IU3I 5H1Sc 1YUZA 4AHXA 1DVBA 1LKMA 3KYYA 1ODHA 1SMWA 4AI1A 2M4YA 1IRNA 2PVXA 1OWBA 5MFZA 2V0EA 2K2DA 1OWCA 3P8BA 5AI3A 4AHYA 5MFPA 1E8JA 3MSUA 4U671 1T9PA 2C6AA 2PYAA 4LHLA 2M6OA 1LTLA 2L0ZA 5EINC 1S2ZA 2M4VA 5GAEc 1IU6A 1VCXA 3J7Y1 1FHMA 2GMGA 2PSMC 2JI2A 2V0FA 4AR3A 2PPTA 4GS7D 6RXNA 1NXGA 1R0IA 3PIO1 1VZGA 4RXNA 3NFPI 3PZAA 2ZIXA 1IU5A 1B71A 2Z3RB 1BQ9A 1RB9A 1SMMA 2HR5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5JVH 1;  5JVG 1;  3J7Z 1;  3PIO 1;  5GAE c;  4UY8 1;  5GAG c;  4V19 6;  5DM6 1;  5DM7 1;  3J7Y 1;  5GAH c;  4U67 1;  5MLC 3;  3PIP 1;  4WFN 1;  5H1S c;  5GAD c; 
#chains in the Genus database with same CATH topology
 3SS2 A;  1IRO A;  4AI2 A;  5FLM L;  4A3K L;  2A6E D;  2XJP A;  3GTQ L;  4B8C D;  4XXB B;  5JVH 1;  1B2O A;  2NVQ L;  1PFU A;  4ZN3 B;  4A3C L;  3PL5 A;  1LKP A;  1I3Q L;  3FKI L;  4YWM A;  3LPE B;  5MF6 A;  2JA7 L;  2LCQ A;  1SFO L;  1R0J A;  5DM7 1;  4POF A;  1CAA A;  4LHN A;  2XJS A;  4G6B A;  5GAH c;  2Z3Q B;  3H9B A;  2JA6 L;  3GTK L;  1RDV A;  3WWL A;  3GTO L;  1QCV A;  1BE7 A;  4QIW P;  1BRF A;  5IYD L;  3GTM L;  4X6A L;  1WCM L;  4JAG A;  3H97 A;  3HOZ L;  2DSX A;  4WFN 1;  2A68 D;  2J9U B;  2O5J D;  2R93 L;  5AN9 H;  3H9C A;  1DVB A;  5IP9 L;  1SMW A;  1IRN A;  3HJW B;  2K2D A;  5IP7 L;  2WB1 P;  3PO3 L;  1TWG L;  1E8J A;  1T9P A;  1QQT A;  4LHL A;  2L0Z A;  5M5X L;  2M4V A;  3M3Y L;  1I6H L;  1FHM A;  4GS7 D;  6RXN A;  3S17 L;  4RXN A;  1IU5 A;  3B08 B;  1SMM A;  4Y52 L;  5MGN A;  3S16 L;  4A3L L;  1RYT A;  5AI2 A;  2CKC A;  3VPB E;  3WWN B;  5JVG 1;  4TPU A;  1YK5 A;  2WAQ P;  2XJT A;  2AUS B;  1VZI A;  3HOV L;  3ZG6 A;  2CR8 A;  4TVM A;  3GTL L;  1P7P A;  3GTP L;  1R9T L;  3GTJ L;  4ZN1 B;  1TWA L;  3LWO B;  1ZRP A;  3M4O L;  1JYB A;  3S2D L;  4BBS L;  1T9O A;  3J7Z 1;  3LWQ B;  3KYX A;  4K9F A;  3RYG A;  5M5W L;  4JAF A;  1RWD A;  2RDV A;  2Y0S P;  3MQK B;  3PKI A;  1T9Q A;  4A3E L;  4BBR L;  1C09 A;  4C2M 1;  2VL6 A;  2RFK B;  4C3J L;  3PWF A;  1B13 A;  2R92 L;  5M5Y L;  4AR6 A;  2MS3 A;  5GAG c;  1B2J A;  5C4J L;  4A3M L;  3PIP 1;  2NYD A;  2AQC A;  4UY8 1;  1BQ8 A;  1R0G A;  2ERJ A;  2NVT L;  3HAX C;  1Y1V L;  1LKM A;  3KYY A;  2YU9 L;  4AI1 A;  2M4Y A;  4Y7N L;  2PVX A;  1OWB A;  2V0E A;  3P8B A;  2B63 L;  3I4N L;  5EIN C;  5GAE c;  1IU6 A;  3J7Y 1;  2GMG A;  2PMZ P;  4AR3 A;  3S15 L;  1I50 L;  3PIO 1;  1VZG A;  1Y1W L;  2EY4 E;  1B71 A;  1BQ9 A;  2HR5 A;  1TWF L;  1K83 L;  3GTG L;  4YWL A;  3B0A B;  3RZD L;  5C3E L;  3HOW L;  3CQZ L;  4A3B L;  4AR5 A;  4AR4 A;  1YUX A;  1FHH A;  3H99 A;  4ME3 A;  3HJY B;  2KN9 A;  3S1Q L;  3K35 A;  1S24 A;  2JI3 A;  1WJV A;  2VUM L;  3PKJ A;  3S14 L;  5IYB L;  2AYJ A;  4A93 L;  5DM6 1;  4BY7 L;  1Z92 B;  1BFY A;  2M6P A;  2QL0 A;  3RZT A;  1PZX A;  2PVE A;  1YV1 A;  7RXN A;  4AHW A;  1RDG A;  4A3J L;  4JAE A;  2B5I D;  1DX8 A;  5FJ8 L;  2NVY L;  3I4M L;  3LWR B;  3LWP B;  4AHZ A;  3MPS A;  5EIO C;  4POG A;  3K7A L;  2NVX L;  3HOU L;  2V3B B;  5GAD c;  3LNL A;  1CAD A;  4JAD A;  3RZO L;  3P2A A;  5C4X L;  5K2M E;  2XJU A;  2XJQ A;  3IU3 I;  5H1S c;  4AYB P;  1ODH A;  3HKZ P;  5MFZ A;  4A3I L;  2E2H L;  3S1R L;  2E2I L;  5MFP A;  3MSU A;  4U67 1;  2C6A A;  3PO2 L;  1LTL A;  1VCX A;  2PSM C;  2JI2 A;  2V0F A;  3PZA A;  2ZIX A;  2Z3R B;  2XJR A;  4XGH A;  4AI0 A;  4BY1 L;  3H3V M;  1F4L A;  5M3F L;  2JI1 A;  4AI3 A;  4C3I L;  4BXX L;  4E6Y A;  3A44 A;  3HOY L;  2ERS A;  2C6B A;  2JA8 L;  5IYC L;  8RXN A;  1SMU A;  3KYU A;  1IW7 D;  4A3D L;  1NNQ A;  5M3M L;  2KKD A;  1NXE A;  2BE5 D;  3FDJ A;  1S30 A;  1TWC L;  1H7V A;  5MLC 3;  1VZH A;  1R0F A;  1RYQ A;  2APO B;  3RZ6 A;  1LKO A;  2CKA A;  5IY0 A;  1R0H A;  3QVD A;  5C44 L;  1QYB A;  2A6H D;  2XJV A;  3QQC E;  5RXN A;  2JA5 L;  3H0G L;  2H12 A;  2R7Z L;  3KYW A;  2E2J L;  3HOX L;  1YK4 A;  4V19 6;  3KYV A;  2A69 D;  2HVY C;  1YUZ A;  4AHX A;  4A3F L;  1PFV A;  4C3H L;  1OWC A;  5AI3 A;  3S1M L;  1TWH L;  3JR7 A;  2PYA A;  4A3G L;  2M6O A;  1S2Z A;  3LWV B;  3S1N L;  2PPT A;  3S2H L;  1NXG A;  1R0I A;  1PFW A;  1PFY A;  3NFP I;  1RB9 A;  4AHY A; 
#chains in the Genus database with same CATH homology
 3SS2 A;  1IRO A;  4AI2 A;  5MGN A;  2XJR A;  4XGH A;  4AI0 A;  4YWL A;  1RYT A;  3B0A B;  5AI2 A;  2CKC A;  3VPB E;  3WWN B;  5JVG 1;  2JI1 A;  2A6E D;  4AI3 A;  4TPU A;  1YK5 A;  4AR5 A;  2XJT A;  4AR4 A;  1YUX A;  1VZI A;  1FHH A;  3ZG6 A;  2XJP A;  4ME3 A;  2CR8 A;  2KN9 A;  4TVM A;  4B8C D;  4E6Y A;  4XXB B;  3A44 A;  3K35 A;  1S24 A;  5JVH 1;  1B2O A;  2JI3 A;  1WJV A;  2ERS A;  4ZN3 B;  1LKP A;  2C6B A;  3PKJ A;  8RXN A;  1SMU A;  3KYU A;  4ZN1 B;  2AYJ A;  1ZRP A;  1JYB A;  5DM6 1;  1IW7 D;  1Z92 B;  1BFY A;  2M6P A;  2QL0 A;  3RZT A;  1NNQ A;  2PVE A;  7RXN A;  1YV1 A;  1T9O A;  3J7Z 1;  2KKD A;  4AHW A;  1RDG A;  1NXE A;  4YWM A;  3LPE B;  2BE5 D;  5MF6 A;  3B08 B;  2LCQ A;  3KYX A;  4K9F A;  3RYG A;  4JAE A;  1R0J A;  4POF A;  5DM7 1;  4JAF A;  1RWD A;  2RDV A;  2B5I D;  1DX8 A;  1CAA A;  4LHN A;  2XJS A;  1S30 A;  3PKI A;  4G6B A;  1T9Q A;  1H7V A;  5GAH c;  5MLC 3;  1VZH A;  1R0F A;  2Z3Q B;  1C09 A;  1RYQ A;  3RZ6 A;  2VL6 A;  1RDV A;  3WWL A;  1QCV A;  1LKO A;  3PWF A;  2CKA A;  5IY0 A;  1B13 A;  1BE7 A;  1R0H A;  3QVD A;  1QYB A;  4AHZ A;  1BRF A;  3MPS A;  5EIO C;  4POG A;  2A6H D;  2V3B B;  2XJV A;  4AR6 A;  4JAG A;  5GAD c;  2MS3 A;  3LNL A;  3QQC E;  5RXN A;  1CAD A;  5GAG c;  2H12 A;  1B2J A;  2DSX A;  3KYW A;  3PIP 1;  4JAD A;  3P2A A;  4WFN 1;  2NYD A;  1YK4 A;  2A68 D;  4UY8 1;  4V19 6;  1BQ8 A;  2J9U B;  2ERJ A;  3KYV A;  1R0G A;  5K2M E;  2O5J D;  5AN9 H;  2XJU A;  2A69 D;  2XJQ A;  3IU3 I;  5H1S c;  1YUZ A;  4AHX A;  1DVB A;  1LKM A;  3KYY A;  1ODH A;  1SMW A;  4AI1 A;  2M4Y A;  1IRN A;  2PVX A;  1OWB A;  5MFZ A;  2V0E A;  2K2D A;  1OWC A;  3P8B A;  5AI3 A;  4AHY A;  5MFP A;  1E8J A;  3MSU A;  4U67 1;  1T9P A;  2C6A A;  2PYA A;  4LHL A;  2M6O A;  1LTL A;  2L0Z A;  5EIN C;  1S2Z A;  2M4V A;  5GAE c;  1IU6 A;  1VCX A;  3J7Y 1;  1FHM A;  2GMG A;  2PSM C;  2JI2 A;  2V0F A;  4AR3 A;  2PPT A;  4GS7 D;  6RXN A;  1NXG A;  1R0I A;  3PIO 1;  1VZG A;  4RXN A;  3NFP I;  3PZA A;  2ZIX A;  1IU5 A;  1B71 A;  2Z3R B;  1BQ9 A;  1RB9 A;  1SMM A;  2HR5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5DM71

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN