5IP9L

Structure of rna polymerase ii-tfiif complex
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (32-35)TIV1 (31-34)S1 (29-31)Updating...
connected with : NaN
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Transcription initiation complex structures elucidate DNA opening.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 3
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2016-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5ip9L00
4AYBP 4A3KL 4BY1L 3M3YL 1TWGL 5M5XL 4A3CL 4A3JL 3GTOL 1R9TL 3S16L 2JA5L 5IYCL 2R92L 2YU9L 3S1ML 5C4JL 2JA8L 4C2M1 4C3JL 2Y0SP 2NVYL 3HOYL 2VUML 2E2IL 5IP9L 3H3VM 3S1RL 1SFOL 3HKZP 4Y7NL 2R7ZL 4A3BL 3I4NL 2NVQL 3I4ML 1TWFL 3S17L 4X6AL 5IYBL 4Y52L 3S1QL 4C3IL 5C3EL 2NVTL 3PO2L 3CQZL 4BBSL 3GTML 3HOZL 5M5WL 3GTJL 2WAQP 3RZDL 2E2JL 5M3ML 1I6HL 1I50L 2NVXL 5IYDL 3HOUL 4A3EL 3HOWL 4A3LL 2R93L 5IP7L 1K83L 4A3IL 4BBRL 3PO3L 3GTLL 3H0GL 4A3ML 3S1NL 4BXXL 3S15L 5C44L 3FKIL 4C3HL 5FJ8L 3M4OL 3S2HL 2PMZP 2E2HL 3HOVL 3S14L 3GTQL 2WB1P 1TWAL 1Y1VL 3S2DL 1Y1WL 2JA7L 5FLML 3GTGL 3GTPL 5M3FL 3GTKL 4BY7L 2B63L 4A3FL 3RZOL 3HOXL 5C4XL 1TWHL 1TWCL 4A3DL 2JA6L 4A93L 4A3GL 3K7AL 5M5YL 4QIWP 1WCML 1I3QL
chains in the Genus database with same CATH superfamily
1SMMA 1VCXA 2L0ZA 2XJSA 5H1Sc 2ERJA 1YK4A 1TWGL 3H97A 3J7Y1 1NNQA 2R92L 1ZRPA 2NYDA 4C2M1 4AI3A 2VUML 1CADA 4U671 5GAEc 3QQCE 2NVQL 3PIP1 4Y52L 5GAHc 8RXNA 3CQZL 4BBSL 3RZDL 1I6HL 1CAAA 2KN9A 3HOUL 4K9FA 2EY4E 3HOWL 2CKAA 1T9QA 1R0FA 1R0HA 5IP7L 3WWNB 2M4YA 1RDGA 2DSXA 3KYUA 1PFYA 5MFZA 5C44L 4B8CD 5FJ8L 1ODHA 2A6HD 3S2HL 3PWFA 3HOVL 3IU3I 4AI1A 3S2DL 1R0GA 2JA7L 2PYAA 2M6OA 2A69D 5MGNA 1LTLA 1YV1A 4POGA 4A3FL 3H9BA 3QVDA 5C4XL 1TWHL 1BFYA 4A93L 2MS3A 2HR5A 5DM71 1VZGA 2B5ID 3K7AL 2PSMC 2RFKB 4A3KL 4BY1L 1SMUA 2V0EA 5M5XL 1Z92B 5EINC 3S16L 1IU5A 3P8BA 1RWDA 2YU9L 3MPSA 7RXNA 2Y0SP 3RZ6A 3HOYL 2V0FA 4YWLA 5IP9L 3KYYA 4Y7NL 4A3BL 2V3BB 1NXEA 2ERSA 1TWFL 2A68D 2JI1A 1RYTA 5IYBL 3S1QL 5GAGc 1BRFA 3PL5A 1F4LA 3HAXC 2AUSB 3GTML 3VPBE 2LCQA 5M3ML 4AR6A 2BE5D 3MQKB 1I50L 2NVXL 5IYDL 1QQTA 2XJVA 2AQCA 5EIOC 1PZXA 4A3LL 2M6PA 4POFA 2R93L 2VL6A 4JAGA 2KKDA 1RB9A 1IW7D 1B13A 1B2JA 4A3ML 5IY0A 3S1NL 4BXXL 3PKJA 2JI3A 4C3HL 1DVBA 5AI2A 3K35A 3RYGA 5RXNA 2PMZP 3S14L 3GTQL 3FDJA 1TWAL 3H99A 1FHMA 1Y1WL 5FLML 3GTPL 3GTKL 1S30A 1R0IA 1IROA 3KYWA 1SMWA 1VZHA 2B63L 2Z3QB 3RZOL 3HOXL 1QYBA 4A3GL 1C09A 5M5YL 1I3QL 4AHWA 4ZN3B 3M3YL 1YUXA 3GTOL 1R9TL 2C6BA 5IYCL 1B71A 3LPEB 1QCVA 1IU6A 4AHXA 3S1ML 2NVYL 2XJQA 3PKIA 3JR7A 3S1RL 5AI3A 4LHLA 3HKZP 2QL0A 1DX8A 2PVXA 3I4NL 4JAEA 3ZG6A 3S17L 4JADA 1E8JA 1T9PA 1BQ8A 3MSUA 2XJUA 1FHHA 3PO2L 2XJPA 2PVEA 3HOZL 5M5WL 3HJWB 2M4VA 3GTJL 2E2JL 2APOB 4TPUA 4JAFA 4AI2A 3P2AA 4V196 2J9UB 2Z3RB 1IRNA 4RXNA 3HJYB 3KYXA 2RDVA 2JI2A 2XJRA 3GTLL 3H0GL 1JYBA 4UY81 3FKIL 3A44A 2XJTA 2GMGA 3M4OL 2PPTA 2E2HL 2WB1P 1T9OA 4G6BA 1Y1VL 3H9CA 4YWMA 1BE7A 1R0JA 1H7VA 2ZIXA 3LWPB 3PZAA 4XGHA 5JVH1 4ZN1B 4AR4A 1LKOA 5MF6A 4AR3A 4ME3A 4AYBP 5K2ME 3B08B 1RYQA 3PIO1 4A3CL 4A3JL 1RDVA 3SS2A 1PFVA 4WFN1 2JA5L 1P7PA 4E6YA 5AN9H 1OWCA 3LNLA 5C4JL 2JA8L 4C3JL 5GADc 2E2IL 3KYVA 1B2OA 3H3VM 1SFOL 2R7ZL 3I4ML 4XXBB 4X6AL 5JVG1 1PFWA 2CKCA 4C3IL 1LKMA 5C3EL 2NVTL 2WAQP 2HVYC 5DM61 3RZTA 1WJVA 4A3EL 1YUZA 3NFPI 1VZIA 2C6AA 4GS7D 4AI0A 1K83L 4A3IL 4BBRL 3J7Z1 4AHZA 3B0AB 3LWVB 3PO3L 5MLC3 2A6ED 4AR5A 1S2ZA 1OWBA 3S15L 3LWRB 1S24A 2AYJA 4LHNA 3WWLA 1PFUA 4TVMA 4AHYA 1NXGA 2K2DA 1YK5A 6RXNA 3GTGL 5MFPA 5M3FL 4BY7L 1BQ9A 1LKPA 2O5JD 3LWQB 1TWCL 4A3DL 2JA6L 3LWOB 2CR8A 2H12A 4QIWP 1WCML
chains in the Genus database with same CATH topology
4AYBP 4A3KL 4BY1L 3M3YL 1TWGL 5M5XL 4A3CL 4A3JL 3GTOL 1R9TL 3S16L 2JA5L 5IYCL 2R92L 2YU9L 3S1ML 5C4JL 2JA8L 4C2M1 4C3JL 2Y0SP 2NVYL 3HOYL 2VUML 2E2IL 5IP9L 3H3VM 3S1RL 1SFOL 3HKZP 4Y7NL 2R7ZL 4A3BL 3I4NL 2NVQL 3I4ML 1TWFL 3S17L 4X6AL 5IYBL 4Y52L 3S1QL 4C3IL 5C3EL 2NVTL 3PO2L 3CQZL 4BBSL 3GTML 3HOZL 5M5WL 3GTJL 2WAQP 3RZDL 2E2JL 5M3ML 1I6HL 1I50L 2NVXL 5IYDL 3HOUL 4A3EL 3HOWL 4A3LL 2R93L 5IP7L 1K83L 4A3IL 4BBRL 3PO3L 3GTLL 3H0GL 4A3ML 3S1NL 4BXXL 3S15L 5C44L 3FKIL 4C3HL 5FJ8L 3M4OL 3S2HL 2PMZP 2E2HL 3HOVL 3S14L 3GTQL 2WB1P 1TWAL 1Y1VL 3S2DL 1Y1WL 2JA7L 5FLML 3GTGL 3GTPL 5M3FL 3GTKL 4BY7L 2B63L 4A3FL 3RZOL 3HOXL 5C4XL 1TWHL 1TWCL 4A3DL 2JA6L 4A93L 4A3GL 3K7AL 5M5YL 4QIWP 1WCML 1I3QL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AYB P;  4A3K L;  4BY1 L;  3M3Y L;  1TWG L;  5M5X L;  4A3C L;  4A3J L;  3GTO L;  1R9T L;  3S16 L;  2JA5 L;  5IYC L;  2R92 L;  2YU9 L;  3S1M L;  5C4J L;  2JA8 L;  4C2M 1;  4C3J L;  2Y0S P;  2NVY L;  3HOY L;  2VUM L;  2E2I L;  5IP9 L;  3H3V M;  3S1R L;  1SFO L;  3HKZ P;  4Y7N L;  2R7Z L;  4A3B L;  3I4N L;  2NVQ L;  3I4M L;  1TWF L;  3S17 L;  4X6A L;  5IYB L;  4Y52 L;  3S1Q L;  4C3I L;  5C3E L;  2NVT L;  3PO2 L;  3CQZ L;  4BBS L;  3GTM L;  3HOZ L;  5M5W L;  3GTJ L;  2WAQ P;  3RZD L;  2E2J L;  5M3M L;  1I6H L;  1I50 L;  2NVX L;  5IYD L;  3HOU L;  4A3E L;  3HOW L;  4A3L L;  2R93 L;  5IP7 L;  1K83 L;  4A3I L;  4BBR L;  3PO3 L;  3GTL L;  3H0G L;  4A3M L;  3S1N L;  4BXX L;  3S15 L;  5C44 L;  3FKI L;  4C3H L;  5FJ8 L;  3M4O L;  3S2H L;  2PMZ P;  2E2H L;  3HOV L;  3S14 L;  3GTQ L;  2WB1 P;  1TWA L;  1Y1V L;  3S2D L;  1Y1W L;  2JA7 L;  5FLM L;  3GTG L;  3GTP L;  5M3F L;  3GTK L;  4BY7 L;  2B63 L;  4A3F L;  3RZO L;  3HOX L;  5C4X L;  1TWH L;  1TWC L;  4A3D L;  2JA6 L;  4A93 L;  4A3G L;  3K7A L;  5M5Y L;  4QIW P;  1WCM L;  1I3Q L; 
#chains in the Genus database with same CATH topology
 1SMM A;  1VCX A;  2L0Z A;  2XJS A;  5H1S c;  2ERJ A;  1YK4 A;  1TWG L;  3H97 A;  3J7Y 1;  1NNQ A;  2R92 L;  1ZRP A;  2NYD A;  4C2M 1;  4AI3 A;  2VUM L;  1CAD A;  4U67 1;  5GAE c;  3QQC E;  2NVQ L;  3PIP 1;  4Y52 L;  5GAH c;  8RXN A;  3CQZ L;  4BBS L;  3RZD L;  1I6H L;  1CAA A;  2KN9 A;  3HOU L;  4K9F A;  2EY4 E;  3HOW L;  2CKA A;  1T9Q A;  1R0F A;  1R0H A;  5IP7 L;  3WWN B;  2M4Y A;  1RDG A;  2DSX A;  3KYU A;  1PFY A;  5MFZ A;  5C44 L;  4B8C D;  5FJ8 L;  1ODH A;  2A6H D;  3S2H L;  3PWF A;  3HOV L;  3IU3 I;  4AI1 A;  3S2D L;  1R0G A;  2JA7 L;  2PYA A;  2M6O A;  2A69 D;  5MGN A;  1LTL A;  1YV1 A;  4POG A;  4A3F L;  3H9B A;  3QVD A;  5C4X L;  1TWH L;  1BFY A;  4A93 L;  2MS3 A;  2HR5 A;  5DM7 1;  1VZG A;  2B5I D;  3K7A L;  2PSM C;  2RFK B;  4A3K L;  4BY1 L;  1SMU A;  2V0E A;  5M5X L;  1Z92 B;  5EIN C;  3S16 L;  1IU5 A;  3P8B A;  1RWD A;  2YU9 L;  3MPS A;  7RXN A;  2Y0S P;  3RZ6 A;  3HOY L;  2V0F A;  4YWL A;  5IP9 L;  3KYY A;  4Y7N L;  4A3B L;  2V3B B;  1NXE A;  2ERS A;  1TWF L;  2A68 D;  2JI1 A;  1RYT A;  5IYB L;  3S1Q L;  5GAG c;  1BRF A;  3PL5 A;  1F4L A;  3HAX C;  2AUS B;  3GTM L;  3VPB E;  2LCQ A;  5M3M L;  4AR6 A;  2BE5 D;  3MQK B;  1I50 L;  2NVX L;  5IYD L;  1QQT A;  2XJV A;  2AQC A;  5EIO C;  1PZX A;  4A3L L;  2M6P A;  4POF A;  2R93 L;  2VL6 A;  4JAG A;  2KKD A;  1RB9 A;  1IW7 D;  1B13 A;  1B2J A;  4A3M L;  5IY0 A;  3S1N L;  4BXX L;  3PKJ A;  2JI3 A;  4C3H L;  1DVB A;  5AI2 A;  3K35 A;  3RYG A;  5RXN A;  2PMZ P;  3S14 L;  3GTQ L;  3FDJ A;  1TWA L;  3H99 A;  1FHM A;  1Y1W L;  5FLM L;  3GTP L;  3GTK L;  1S30 A;  1R0I A;  1IRO A;  3KYW A;  1SMW A;  1VZH A;  2B63 L;  2Z3Q B;  3RZO L;  3HOX L;  1QYB A;  4A3G L;  1C09 A;  5M5Y L;  1I3Q L;  4AHW A;  4ZN3 B;  3M3Y L;  1YUX A;  3GTO L;  1R9T L;  2C6B A;  5IYC L;  1B71 A;  3LPE B;  1QCV A;  1IU6 A;  4AHX A;  3S1M L;  2NVY L;  2XJQ A;  3PKI A;  3JR7 A;  3S1R L;  5AI3 A;  4LHL A;  3HKZ P;  2QL0 A;  1DX8 A;  2PVX A;  3I4N L;  4JAE A;  3ZG6 A;  3S17 L;  4JAD A;  1E8J A;  1T9P A;  1BQ8 A;  3MSU A;  2XJU A;  1FHH A;  3PO2 L;  2XJP A;  2PVE A;  3HOZ L;  5M5W L;  3HJW B;  2M4V A;  3GTJ L;  2E2J L;  2APO B;  4TPU A;  4JAF A;  4AI2 A;  3P2A A;  4V19 6;  2J9U B;  2Z3R B;  1IRN A;  4RXN A;  3HJY B;  3KYX A;  2RDV A;  2JI2 A;  2XJR A;  3GTL L;  3H0G L;  1JYB A;  4UY8 1;  3FKI L;  3A44 A;  2XJT A;  2GMG A;  3M4O L;  2PPT A;  2E2H L;  2WB1 P;  1T9O A;  4G6B A;  1Y1V L;  3H9C A;  4YWM A;  1BE7 A;  1R0J A;  1H7V A;  2ZIX A;  3LWP B;  3PZA A;  4XGH A;  5JVH 1;  4ZN1 B;  4AR4 A;  1LKO A;  5MF6 A;  4AR3 A;  4ME3 A;  4AYB P;  5K2M E;  3B08 B;  1RYQ A;  3PIO 1;  4A3C L;  4A3J L;  1RDV A;  3SS2 A;  1PFV A;  4WFN 1;  2JA5 L;  1P7P A;  4E6Y A;  5AN9 H;  1OWC A;  3LNL A;  5C4J L;  2JA8 L;  4C3J L;  5GAD c;  2E2I L;  3KYV A;  1B2O A;  3H3V M;  1SFO L;  2R7Z L;  3I4M L;  4XXB B;  4X6A L;  5JVG 1;  1PFW A;  2CKC A;  4C3I L;  1LKM A;  5C3E L;  2NVT L;  2WAQ P;  2HVY C;  5DM6 1;  3RZT A;  1WJV A;  4A3E L;  1YUZ A;  3NFP I;  1VZI A;  2C6A A;  4GS7 D;  4AI0 A;  1K83 L;  4A3I L;  4BBR L;  3J7Z 1;  4AHZ A;  3B0A B;  3LWV B;  3PO3 L;  5MLC 3;  2A6E D;  4AR5 A;  1S2Z A;  1OWB A;  3S15 L;  3LWR B;  1S24 A;  2AYJ A;  4LHN A;  3WWL A;  1PFU A;  4TVM A;  4AHY A;  1NXG A;  2K2D A;  1YK5 A;  6RXN A;  3GTG L;  5MFP A;  5M3F L;  4BY7 L;  1BQ9 A;  1LKP A;  2O5J D;  3LWQ B;  1TWC L;  4A3D L;  2JA6 L;  3LWO B;  2CR8 A;  2H12 A;  4QIW P;  1WCM L; 
#chains in the Genus database with same CATH homology
 4AYB P;  4A3K L;  4BY1 L;  3M3Y L;  1TWG L;  5M5X L;  4A3C L;  4A3J L;  3GTO L;  1R9T L;  3S16 L;  2JA5 L;  5IYC L;  2R92 L;  2YU9 L;  3S1M L;  5C4J L;  2JA8 L;  4C2M 1;  4C3J L;  2Y0S P;  2NVY L;  3HOY L;  2VUM L;  2E2I L;  5IP9 L;  3H3V M;  3S1R L;  1SFO L;  3HKZ P;  4Y7N L;  2R7Z L;  4A3B L;  3I4N L;  2NVQ L;  3I4M L;  1TWF L;  3S17 L;  4X6A L;  5IYB L;  4Y52 L;  3S1Q L;  4C3I L;  5C3E L;  2NVT L;  3PO2 L;  3CQZ L;  4BBS L;  3GTM L;  3HOZ L;  5M5W L;  3GTJ L;  2WAQ P;  3RZD L;  2E2J L;  5M3M L;  1I6H L;  1I50 L;  2NVX L;  5IYD L;  3HOU L;  4A3E L;  3HOW L;  4A3L L;  2R93 L;  5IP7 L;  1K83 L;  4A3I L;  4BBR L;  3PO3 L;  3GTL L;  3H0G L;  4A3M L;  3S1N L;  4BXX L;  3S15 L;  5C44 L;  3FKI L;  4C3H L;  5FJ8 L;  3M4O L;  3S2H L;  2PMZ P;  2E2H L;  3HOV L;  3S14 L;  3GTQ L;  2WB1 P;  1TWA L;  1Y1V L;  3S2D L;  1Y1W L;  2JA7 L;  5FLM L;  3GTG L;  3GTP L;  5M3F L;  3GTK L;  4BY7 L;  2B63 L;  4A3F L;  3RZO L;  3HOX L;  5C4X L;  1TWH L;  1TWC L;  4A3D L;  2JA6 L;  4A93 L;  4A3G L;  3K7A L;  5M5Y L;  4QIW P;  1WCM L;  1I3Q L; 
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