5IYCL

Human core-pic in the initial transcribing state
Total Genus 0

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
46
structure length
46
Chain Sequence
QPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (16-18)TII1 (19-22)S2 (25-27)EMPTYUpdating...
connected with : NaN
molecule tags Transcription, transferase/dna
source organism Homo sapiens
publication title Near-atomic resolution visualization of human transcription promoter opening.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5iycL00
3HKZP 3S1NL 2PMZP 5IP7L 2JA7L 4A3DL 4C2M1 5M5XL 4A3KL 5IYCL 2JA6L 4C3HL 2R93L 3GTKL 2R7ZL 3GTPL 5C3EL 4A93L 1I50L 4BY1L 3HOUL 3RZDL 2E2IL 3HOWL 5FJ8L 3S1QL 3RZOL 3I4NL 2WB1P 4A3CL 4BXXL 3S1ML 3I4ML 3GTML 3PO3L 3S2HL 4A3JL 4A3GL 4AYBP 4A3LL 4C3JL 1WCML 1TWGL 2VUML 3GTJL 1TWHL 3CQZL 3K7AL 2YU9L 4BBRL 3GTGL 2NVXL 2WAQP 1I6HL 3S2DL 2NVQL 5C4JL 2NVYL 1Y1WL 5M5YL 1TWAL 1SFOL 2NVTL 1TWCL 3S14L 4BY7L 5IP9L 3PO2L 4X6AL 2JA8L 3M4OL 1K83L 5M3FL 5M5WL 2JA5L 3HOZL 3HOYL 5C4XL 3H0GL 3H3VM 5FLML 2E2JL 4QIWP 3HOVL 1TWFL 4C3IL 4Y7NL 3S16L 3GTLL 3GTQL 4A3BL 1Y1VL 3GTOL 2B63L 4Y52L 4A3EL 3S17L 4A3ML 4A3FL 2E2HL 5M3ML 5IYBL 4BBSL 5C44L 3M3YL 3FKIL 3S1RL 1R9TL 3HOXL 2R92L 4A3IL 3S15L 1I3QL 2Y0SP 5IYDL
chains in the Genus database with same CATH superfamily
3S1NL 1VZGA 2PMZP 5MFZA 2JA6L 5IYCL 3PIO1 4B8CD 3GTPL 3MPSA 1R0JA 4AI0A 4BY1L 3HOUL 3HOWL 3LNLA 3HJWB 3S1QL 3RZOL 1BE7A 1B13A 3KYVA 1B2JA 3I4NL 4BXXL 5GAHc 1B71A 4AHWA 1NXEA 1RWDA 2ERSA 1IW7D 3MQKB 4POFA 4A3GL 1PFYA 1ODHA 5MF6A 3GTJL 1TWHL 3CQZL 2YU9L 5GADc 3GTGL 3S2DL 1PFVA 1T9QA 2NVYL 2J9UB 1Y1WL 3H97A 4AHYA 3QQCE 1RDVA 4JADA 3HOZL 3PKJA 2XJSA 1NNQA 1DVBA 5JVH1 4QIWP 2PVEA 3HOVL 1TWFL 2A69D 3S16L 2XJVA 1F4LA 1CAAA 4AR3A 2RDVA 4Y52L 3B0AB 1BFYA 1PZXA 3PL5A 5GAGc 1ZRPA 4U671 4WFN1 3HOXL 2R92L 1FHHA 2CKCA 2RFKB 1YV1A 1YUXA 2Y0SP 1SMMA 7RXNA 2XJRA 3P2AA 1Z92B 3WWNB 1YUZA 4C2M1 4A3KL 1R0GA 2R93L 3GTKL 2R7ZL 5H1Sc 4YWMA 1LKOA 1RB9A 4UY81 3JR7A 4ZN1B 1B2OA 5MFPA 2WB1P 5MGNA 3RZTA 5IY0A 4AYBP 5DM71 1IU5A 2XJQA 2XJTA 4C3JL 1BRFA 2VUML 3K7AL 5MLC3 4AR6A 1E8JA 4JAFA 4ZN3B 3RZ6A 1R0IA 3PZAA 1TWAL 2L0ZA 4GS7D 3S14L 4BY7L 5IP9L 5K2ME 4X6AL 4LHLA 1IRNA 1S24A 4AR5A 1CADA 2ZIXA 2NYDA 4JAEA 3HOYL 1LKMA 2E2JL 1BQ8A 2H12A 1C09A 2LCQA 3WWLA 3VPBE 2V3BB 4XGHA 1OWBA 1VCXA 4A3BL 2B63L 4A3EL 3P8BA 4A3ML 4XXBB 2E2HL 5M3ML 5IYBL 3FKIL 3LWVB 3PWFA 1R9TL 4A3IL 5AI2A 1I3QL 1T9OA 3H9CA 3HKZP 4YWLA 2JA7L 4A3DL 5M5XL 3LWQB 1RYTA 2K2DA 5GAEc 3H9BA 5C3EL 2MS3A 4A93L 2XJUA 2E2IL 2JI3A 3IU3I 3RYGA 1DX8A 4A3CL 3NFPI 4RXNA 3I4ML 3GTML 1FHMA 2CKAA 2C6BA 1S30A 1YK4A 2VL6A 1WCML 1TWGL 2A6HD 2AUSB 4BBRL 2WAQP 4LHNA 2M4VA 4TPUA 3LWPB 4AI3A 4JAGA 2BE5D 5JVG1 3KYUA 5DM61 2GMGA 5M5YL 3HAXC 1RDGA 2NVTL 2ERJA 3PO2L 1VZIA 1H7VA 1R0FA 1K83L 5M3FL 2V0FA 3PKIA 5M5WL 1LKPA 2PSMC 5AN9H 1NXGA 2AYJA 5C4XL 3H0GL 4AR4A 1QYBA 2Z3QB 3H3VM 4E6YA 2V0EA 1SMUA 4C3IL 5EIOC 4Y7NL 3KYWA 2DSXA 3GTLL 3GTQL 1OWCA 1P7PA 3GTOL 4AI2A 4TVMA 3S17L 3FDJA 4K9FA 4A3FL 5C44L 2PVXA 3PIP1 2HVYC 3J7Y1 1T9PA 4AI1A 2EY4E 2AQCA 5IYDL 2M6OA 3MSUA 5IP7L 1JYBA 2HR5A 3ZG6A 1VZHA 4C3HL 2PPTA 3K35A 1I50L 3J7Z1 3RZDL 5FJ8L 3SS2A 1RYQA 1SMWA 2QL0A 3S1ML 1IROA 3PO3L 3S2HL 5EINC 4POGA 4A3JL 2M6PA 1R0HA 4AHZA 4ME3A 4A3LL 1PFUA 2B5ID 3LPEB 4G6BA 4AHXA 2NVXL 5RXNA 1I6HL 2NVQL 5C4JL 2JI2A 2Z3RB 3A44A 1LTLA 1SFOL 8RXNA 1TWCL 2M4YA 3KYYA 2XJPA 1QCVA 2A6ED 3KYXA 4V196 2JA8L 3M4OL 1QQTA 2JA5L 2C6AA 5FLML 2CR8A 2APOB 3LWOB 3B08B 1S2ZA 1WJVA 1YK5A 5AI3A 1Y1VL 2KKDA 3H99A 2O5JD 3LWRB 3QVDA 3HJYB 1BQ9A 2KN9A 4BBSL 1PFWA 3M3YL 3S1RL 1IU6A 2JI1A 2PYAA 2A68D 3S15L 6RXNA
chains in the Genus database with same CATH topology
3HKZP 3S1NL 2PMZP 5IP7L 2JA7L 4A3DL 4C2M1 5M5XL 4A3KL 5IYCL 2JA6L 4C3HL 2R93L 3GTKL 2R7ZL 3GTPL 5C3EL 4A93L 1I50L 4BY1L 3HOUL 3RZDL 2E2IL 3HOWL 5FJ8L 3S1QL 3RZOL 3I4NL 2WB1P 4A3CL 4BXXL 3S1ML 3I4ML 3GTML 3PO3L 3S2HL 4A3JL 4A3GL 4AYBP 4A3LL 4C3JL 1WCML 1TWGL 2VUML 3GTJL 1TWHL 3CQZL 3K7AL 2YU9L 4BBRL 3GTGL 2NVXL 2WAQP 1I6HL 3S2DL 2NVQL 5C4JL 2NVYL 1Y1WL 5M5YL 1TWAL 1SFOL 2NVTL 1TWCL 3S14L 4BY7L 5IP9L 3PO2L 4X6AL 2JA8L 3M4OL 1K83L 5M3FL 5M5WL 2JA5L 3HOZL 3HOYL 5C4XL 3H0GL 3H3VM 5FLML 2E2JL 4QIWP 3HOVL 1TWFL 4C3IL 4Y7NL 3S16L 3GTLL 3GTQL 4A3BL 1Y1VL 3GTOL 2B63L 4Y52L 4A3EL 3S17L 4A3ML 4A3FL 2E2HL 5M3ML 5IYBL 4BBSL 5C44L 3M3YL 3FKIL 3S1RL 1R9TL 3HOXL 2R92L 4A3IL 3S15L 1I3QL 2Y0SP 5IYDL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HKZ P;  3S1N L;  2PMZ P;  5IP7 L;  2JA7 L;  4A3D L;  4C2M 1;  5M5X L;  4A3K L;  5IYC L;  2JA6 L;  4C3H L;  2R93 L;  3GTK L;  2R7Z L;  3GTP L;  5C3E L;  4A93 L;  1I50 L;  4BY1 L;  3HOU L;  3RZD L;  2E2I L;  3HOW L;  5FJ8 L;  3S1Q L;  3RZO L;  3I4N L;  2WB1 P;  4A3C L;  4BXX L;  3S1M L;  3I4M L;  3GTM L;  3PO3 L;  3S2H L;  4A3J L;  4A3G L;  4AYB P;  4A3L L;  4C3J L;  1WCM L;  1TWG L;  2VUM L;  3GTJ L;  1TWH L;  3CQZ L;  3K7A L;  2YU9 L;  4BBR L;  3GTG L;  2NVX L;  2WAQ P;  1I6H L;  3S2D L;  2NVQ L;  5C4J L;  2NVY L;  1Y1W L;  5M5Y L;  1TWA L;  1SFO L;  2NVT L;  1TWC L;  3S14 L;  4BY7 L;  5IP9 L;  3PO2 L;  4X6A L;  2JA8 L;  3M4O L;  1K83 L;  5M3F L;  5M5W L;  2JA5 L;  3HOZ L;  3HOY L;  5C4X L;  3H0G L;  3H3V M;  5FLM L;  2E2J L;  4QIW P;  3HOV L;  1TWF L;  4C3I L;  4Y7N L;  3S16 L;  3GTL L;  3GTQ L;  4A3B L;  1Y1V L;  3GTO L;  2B63 L;  4Y52 L;  4A3E L;  3S17 L;  4A3M L;  4A3F L;  2E2H L;  5M3M L;  5IYB L;  4BBS L;  5C44 L;  3M3Y L;  3FKI L;  3S1R L;  1R9T L;  3HOX L;  2R92 L;  4A3I L;  3S15 L;  1I3Q L;  2Y0S P;  5IYD L; 
#chains in the Genus database with same CATH topology
 3S1N L;  1VZG A;  2PMZ P;  5MFZ A;  2JA6 L;  5IYC L;  3PIO 1;  4B8C D;  3GTP L;  3MPS A;  1R0J A;  4AI0 A;  4BY1 L;  3HOU L;  3HOW L;  3LNL A;  3HJW B;  3S1Q L;  3RZO L;  1BE7 A;  1B13 A;  3KYV A;  1B2J A;  3I4N L;  4BXX L;  5GAH c;  1B71 A;  4AHW A;  1NXE A;  1RWD A;  2ERS A;  1IW7 D;  3MQK B;  4POF A;  4A3G L;  1PFY A;  1ODH A;  5MF6 A;  3GTJ L;  1TWH L;  3CQZ L;  2YU9 L;  5GAD c;  3GTG L;  3S2D L;  1PFV A;  1T9Q A;  2NVY L;  2J9U B;  1Y1W L;  3H97 A;  4AHY A;  3QQC E;  1RDV A;  4JAD A;  3HOZ L;  3PKJ A;  2XJS A;  1NNQ A;  1DVB A;  5JVH 1;  4QIW P;  2PVE A;  3HOV L;  1TWF L;  2A69 D;  3S16 L;  2XJV A;  1F4L A;  1CAA A;  4AR3 A;  2RDV A;  4Y52 L;  3B0A B;  1BFY A;  1PZX A;  3PL5 A;  5GAG c;  1ZRP A;  4U67 1;  4WFN 1;  3HOX L;  2R92 L;  1FHH A;  2CKC A;  2RFK B;  1YV1 A;  1YUX A;  2Y0S P;  1SMM A;  7RXN A;  2XJR A;  3P2A A;  1Z92 B;  3WWN B;  1YUZ A;  4C2M 1;  4A3K L;  1R0G A;  2R93 L;  3GTK L;  2R7Z L;  5H1S c;  4YWM A;  1LKO A;  1RB9 A;  4UY8 1;  3JR7 A;  4ZN1 B;  1B2O A;  5MFP A;  2WB1 P;  5MGN A;  3RZT A;  5IY0 A;  4AYB P;  5DM7 1;  1IU5 A;  2XJQ A;  2XJT A;  4C3J L;  1BRF A;  2VUM L;  3K7A L;  5MLC 3;  4AR6 A;  1E8J A;  4JAF A;  4ZN3 B;  3RZ6 A;  1R0I A;  3PZA A;  1TWA L;  2L0Z A;  4GS7 D;  3S14 L;  4BY7 L;  5IP9 L;  5K2M E;  4X6A L;  4LHL A;  1IRN A;  1S24 A;  4AR5 A;  1CAD A;  2ZIX A;  2NYD A;  4JAE A;  3HOY L;  1LKM A;  2E2J L;  1BQ8 A;  2H12 A;  1C09 A;  2LCQ A;  3WWL A;  3VPB E;  2V3B B;  4XGH A;  1OWB A;  1VCX A;  4A3B L;  2B63 L;  4A3E L;  3P8B A;  4A3M L;  4XXB B;  2E2H L;  5M3M L;  5IYB L;  3FKI L;  3LWV B;  3PWF A;  1R9T L;  4A3I L;  5AI2 A;  1I3Q L;  1T9O A;  3H9C A;  3HKZ P;  4YWL A;  2JA7 L;  4A3D L;  5M5X L;  3LWQ B;  1RYT A;  2K2D A;  5GAE c;  3H9B A;  5C3E L;  2MS3 A;  4A93 L;  2XJU A;  2E2I L;  2JI3 A;  3IU3 I;  3RYG A;  1DX8 A;  4A3C L;  3NFP I;  4RXN A;  3I4M L;  3GTM L;  1FHM A;  2CKA A;  2C6B A;  1S30 A;  1YK4 A;  2VL6 A;  1WCM L;  1TWG L;  2A6H D;  2AUS B;  4BBR L;  2WAQ P;  4LHN A;  2M4V A;  4TPU A;  3LWP B;  4AI3 A;  4JAG A;  2BE5 D;  5JVG 1;  3KYU A;  5DM6 1;  2GMG A;  5M5Y L;  3HAX C;  1RDG A;  2NVT L;  2ERJ A;  3PO2 L;  1VZI A;  1H7V A;  1R0F A;  1K83 L;  5M3F L;  2V0F A;  3PKI A;  5M5W L;  1LKP A;  2PSM C;  5AN9 H;  1NXG A;  2AYJ A;  5C4X L;  3H0G L;  4AR4 A;  1QYB A;  2Z3Q B;  3H3V M;  4E6Y A;  2V0E A;  1SMU A;  4C3I L;  5EIO C;  4Y7N L;  3KYW A;  2DSX A;  3GTL L;  3GTQ L;  1OWC A;  1P7P A;  3GTO L;  4AI2 A;  4TVM A;  3S17 L;  3FDJ A;  4K9F A;  4A3F L;  5C44 L;  2PVX A;  3PIP 1;  2HVY C;  3J7Y 1;  1T9P A;  4AI1 A;  2EY4 E;  2AQC A;  5IYD L;  2M6O A;  3MSU A;  5IP7 L;  1JYB A;  2HR5 A;  3ZG6 A;  1VZH A;  4C3H L;  2PPT A;  3K35 A;  1I50 L;  3J7Z 1;  3RZD L;  5FJ8 L;  3SS2 A;  1RYQ A;  1SMW A;  2QL0 A;  3S1M L;  1IRO A;  3PO3 L;  3S2H L;  5EIN C;  4POG A;  4A3J L;  2M6P A;  1R0H A;  4AHZ A;  4ME3 A;  4A3L L;  1PFU A;  2B5I D;  3LPE B;  4G6B A;  4AHX A;  2NVX L;  5RXN A;  1I6H L;  2NVQ L;  5C4J L;  2JI2 A;  2Z3R B;  3A44 A;  1LTL A;  1SFO L;  8RXN A;  1TWC L;  2M4Y A;  3KYY A;  2XJP A;  1QCV A;  2A6E D;  3KYX A;  4V19 6;  2JA8 L;  3M4O L;  1QQT A;  2JA5 L;  2C6A A;  5FLM L;  2CR8 A;  2APO B;  3LWO B;  3B08 B;  1S2Z A;  1WJV A;  1YK5 A;  5AI3 A;  1Y1V L;  2KKD A;  3H99 A;  2O5J D;  3LWR B;  3QVD A;  3HJY B;  1BQ9 A;  2KN9 A;  4BBS L;  1PFW A;  3M3Y L;  3S1R L;  1IU6 A;  2JI1 A;  2PYA A;  2A68 D;  3S15 L;  6RXN A; 
#chains in the Genus database with same CATH homology
 3HKZ P;  3S1N L;  2PMZ P;  5IP7 L;  2JA7 L;  4A3D L;  4C2M 1;  5M5X L;  4A3K L;  5IYC L;  2JA6 L;  4C3H L;  2R93 L;  3GTK L;  2R7Z L;  3GTP L;  5C3E L;  4A93 L;  1I50 L;  4BY1 L;  3HOU L;  3RZD L;  2E2I L;  3HOW L;  5FJ8 L;  3S1Q L;  3RZO L;  3I4N L;  2WB1 P;  4A3C L;  4BXX L;  3S1M L;  3I4M L;  3GTM L;  3PO3 L;  3S2H L;  4A3J L;  4A3G L;  4AYB P;  4A3L L;  4C3J L;  1WCM L;  1TWG L;  2VUM L;  3GTJ L;  1TWH L;  3CQZ L;  3K7A L;  2YU9 L;  4BBR L;  3GTG L;  2NVX L;  2WAQ P;  1I6H L;  3S2D L;  2NVQ L;  5C4J L;  2NVY L;  1Y1W L;  5M5Y L;  1TWA L;  1SFO L;  2NVT L;  1TWC L;  3S14 L;  4BY7 L;  5IP9 L;  3PO2 L;  4X6A L;  2JA8 L;  3M4O L;  1K83 L;  5M3F L;  5M5W L;  2JA5 L;  3HOZ L;  3HOY L;  5C4X L;  3H0G L;  3H3V M;  5FLM L;  2E2J L;  4QIW P;  3HOV L;  1TWF L;  4C3I L;  4Y7N L;  3S16 L;  3GTL L;  3GTQ L;  4A3B L;  1Y1V L;  3GTO L;  2B63 L;  4Y52 L;  4A3E L;  3S17 L;  4A3M L;  4A3F L;  2E2H L;  5M3M L;  5IYB L;  4BBS L;  5C44 L;  3M3Y L;  3FKI L;  3S1R L;  1R9T L;  3HOX L;  2R92 L;  4A3I L;  3S15 L;  1I3Q L;  2Y0S P;  5IYD L; 
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