5IYDL

Human core-pic in the initial transcribing state (no iis)
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
QPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (14-16)TIV1 (19-22)Updating...
connected with : NaN
molecule tags Transcription, transferase/dna/rna
source organism Homo sapiens
publication title Near-atomic resolution visualization of human transcription promoter opening.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5iydL00
2JA6L 3H0GL 1WCML 3I4ML 3GTKL 3K7AL 5IP7L 2NVQL 4A93L 4A3LL 3RZDL 5FLML 2B63L 1TWAL 1Y1VL 3GTOL 3GTGL 3S2DL 3S14L 3M4OL 3S15L 3GTLL 3PO2L 4A3FL 1I50L 4BY7L 3HKZP 2NVTL 4BXXL 5FJ8L 5IYCL 4A3KL 4C2M1 3HOXL 1TWFL 4A3BL 3FKIL 5IYBL 1SFOL 1Y1WL 4BBSL 1TWGL 2YU9L 2PMZP 2R92L 3CQZL 5C3EL 5C4JL 3GTQL 1I6HL 4QIWP 5C4XL 3HOYL 1TWCL 3M3YL 4C3HL 3RZOL 1TWHL 5C44L 3GTJL 3S1NL 3GTPL 2E2IL 4X6AL 5IP9L 4AYBP 4C3JL 2R93L 1R9TL 4A3DL 3PO3L 3HOVL 3GTML 5M3FL 2WAQP 4BBRL 5IYDL 4A3JL 3S16L 5M3ML 4A3ML 2JA8L 5M5WL 4Y7NL 3HOUL 4BY1L 2JA5L 2NVYL 3S1RL 4C3IL 3H3VM 3S1QL 2E2HL 2NVXL 1I3QL 4A3EL 2JA7L 5M5YL 1K83L 4A3GL 2E2JL 4A3CL 3HOZL 3S2HL 4A3IL 2Y0SP 3HOWL 2VUML 5M5XL 3S17L 3I4NL 3S1ML 4Y52L 2WB1P 2R7ZL
chains in the Genus database with same CATH superfamily
4AI1A 3GTKL 1PFYA 1DX8A 4YWMA 3QQCE 2NVQL 2JI2A 1YK5A 4AHZA 3RZDL 2B63L 3PIO1 3B08B 1I50L 3HJWB 3KYWA 2HVYC 5IYCL 4C2M1 2M6OA 1YUXA 3FKIL 1SFOL 4UY81 1Y1WL 2KN9A 3LWQB 2YU9L 1OWBA 2AYJA 1BQ9A 5C3EL 2APOB 5AI2A 3SS2A 6RXNA 3RZTA 1IW7D 1R0FA 4C3HL 3A44A 3WWNB 3S1NL 2V0FA 5RXNA 5EIOC 1SMWA 4BBRL 1QYBA 5IYDL 2KKDA 2JA8L 2XJVA 5MFPA 1H7VA 2Z3RB 5K2ME 5M5YL 1K83L 4JADA 5MLC3 2E2JL 4A3CL 3LPEB 4A3IL 2Y0SP 1ODHA 5DM71 3IU3I 5EINC 2C6AA 3S17L 1S2ZA 3PIP1 2XJPA 4JAGA 1WJVA 2JA6L 4B8CD 1WCML 3I4ML 2MS3A 5IY0A 3KYUA 4A93L 1PZXA 1SMUA 1TWAL 4JAFA 3GTOL 3GTGL 3S14L 2B5ID 3GTLL 3PO2L 4A3FL 2HR5A 1RDGA 1B2JA 3J7Z1 2NVTL 4BY7L 4BXXL 1B2OA 4A3KL 4LHNA 2M6PA 1BE7A 4POGA 4AR6A 1R0GA 5H1Sc 5C4JL 3LWPB 2DSXA 1YUZA 2M4YA 4AI0A 1PFWA 3RZOL 1TWHL 5MFZA 3K35A 5C44L 2A6ED 7RXNA 3GTPL 3MQKB 1LTLA 2AUSB 1VCXA 3RYGA 1VZGA 4AYBP 4A3DL 1FHHA 2XJQA 1IROA 2C6BA 5M3FL 3HOVL 4AI2A 4Y7NL 3S1QL 4C3IL 3H3VM 2VL6A 2E2HL 2NVXL 1Z92B 2A6HD 2JA7L 3ZG6A 4V196 2A69D 4E6YA 3B0AB 1VZHA 2BE5D 3I4NL 3H9BA 5GAEc 4Y52L 5MF6A 2CR8A 2K2DA 3HAXC 2WB1P 1VZIA 3H0GL 1P7PA 2LCQA 5AI3A 1ZRPA 2XJSA 1F4LA 2PVXA 1R0JA 1T9OA 3JR7A 1T9PA 1Y1VL 4ME3A 3S2DL 3HJYB 5GADc 2AQCA 1SMMA 8RXNA 1OWCA 5FJ8L 1CADA 3FDJA 4XGHA 1RWDA 5IYBL 1RYQA 4JAEA 4TPUA 2GMGA 1PFVA 2CKCA 1TWGL 4ZN3B 2RDVA 5JVG1 2PMZP 1B71A 3GTQL 2QL0A 1YK4A 3HOYL 2ERSA 1TWCL 2ERJA 3M3YL 1JYBA 3P8BA 3GTJL 3KYVA 3P2AA 4X6AL 3MSUA 1IU5A 4ZN1B 5IP9L 2R93L 1R9TL 2J9UB 2WAQP 4A3JL 5M3ML 1PFUA 3PWFA 2PPTA 4BY1L 1CAAA 2JA5L 3S1RL 3QVDA 4A3EL 1BFYA 5MGNA 4XXBB 1BRFA 1RYTA 4AHWA 3LNLA 3S2HL 1LKMA 4K9FA 3HOWL 2VUML 1NXGA 4G6BA 2H12A 4AHYA 3KYXA 2CKAA 1R0IA 2V0EA 3J7Y1 1NXEA 5GAGc 3S1ML 4AR4A 2RFKB 1B13A 2R7ZL 2PYAA 4AR5A 5JVH1 1S30A 1YV1A 2JI1A 2L0ZA 1IRNA 3K7AL 5IP7L 2XJUA 1C09A 4TVMA 1IU6A 4A3LL 4GS7D 2O5JD 3MPSA 5FLML 4RXNA 1BQ8A 1T9QA 3M4OL 4LHLA 3S15L 1DVBA 2NYDA 1S24A 2V3BB 2PSMC 3HKZP 3WWLA 3HOXL 1TWFL 4A3BL 1RB9A 3VPBE 1NNQA 3LWOB 1E8JA 2M4VA 4BBSL 2R92L 3CQZL 4YWLA 1I6HL 3PZAA 4QIWP 3PKJA 5C4XL 1FHMA 3PKIA 5DM61 2PVEA 3PL5A 2Z3QB 1R0HA 2E2IL 3H97A 3LWVB 4C3JL 2EY4E 4U671 3PO3L 2ZIXA 3GTML 1RDVA 4AHXA 4A3ML 5M5WL 3HOUL 2XJTA 2NVYL 1I3QL 3RZ6A 4A3GL 2XJRA 3KYYA 1LKPA 3NFPI 3HOZL 3H99A 3H9CA 2JI3A 1LKOA 3LWRB 5AN9H 4POFA 4AR3A 5M5XL 1QCVA 4AI3A 5GAHc 4WFN1 1QQTA 2A68D 3S16L
chains in the Genus database with same CATH topology
2JA6L 3H0GL 1WCML 3I4ML 3GTKL 3K7AL 5IP7L 2NVQL 4A93L 4A3LL 3RZDL 5FLML 2B63L 1TWAL 1Y1VL 3GTOL 3GTGL 3S2DL 3S14L 3M4OL 3S15L 3GTLL 3PO2L 4A3FL 1I50L 4BY7L 3HKZP 2NVTL 4BXXL 5FJ8L 5IYCL 4A3KL 4C2M1 3HOXL 1TWFL 4A3BL 3FKIL 5IYBL 1SFOL 1Y1WL 4BBSL 1TWGL 2YU9L 2PMZP 2R92L 3CQZL 5C3EL 5C4JL 3GTQL 1I6HL 4QIWP 5C4XL 3HOYL 1TWCL 3M3YL 4C3HL 3RZOL 1TWHL 5C44L 3GTJL 3S1NL 3GTPL 2E2IL 4X6AL 5IP9L 4AYBP 4C3JL 2R93L 1R9TL 4A3DL 3PO3L 3HOVL 3GTML 5M3FL 2WAQP 4BBRL 5IYDL 4A3JL 3S16L 5M3ML 4A3ML 2JA8L 5M5WL 4Y7NL 3HOUL 4BY1L 2JA5L 2NVYL 3S1RL 4C3IL 3H3VM 3S1QL 2E2HL 2NVXL 1I3QL 4A3EL 2JA7L 5M5YL 1K83L 4A3GL 2E2JL 4A3CL 3HOZL 3S2HL 4A3IL 2Y0SP 3HOWL 2VUML 5M5XL 3S17L 3I4NL 3S1ML 4Y52L 2WB1P 2R7ZL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA6 L;  3H0G L;  1WCM L;  3I4M L;  3GTK L;  3K7A L;  5IP7 L;  2NVQ L;  4A93 L;  4A3L L;  3RZD L;  5FLM L;  2B63 L;  1TWA L;  1Y1V L;  3GTO L;  3GTG L;  3S2D L;  3S14 L;  3M4O L;  3S15 L;  3GTL L;  3PO2 L;  4A3F L;  1I50 L;  4BY7 L;  3HKZ P;  2NVT L;  4BXX L;  5FJ8 L;  5IYC L;  4A3K L;  4C2M 1;  3HOX L;  1TWF L;  4A3B L;  3FKI L;  5IYB L;  1SFO L;  1Y1W L;  4BBS L;  1TWG L;  2YU9 L;  2PMZ P;  2R92 L;  3CQZ L;  5C3E L;  5C4J L;  3GTQ L;  1I6H L;  4QIW P;  5C4X L;  3HOY L;  1TWC L;  3M3Y L;  4C3H L;  3RZO L;  1TWH L;  5C44 L;  3GTJ L;  3S1N L;  3GTP L;  2E2I L;  4X6A L;  5IP9 L;  4AYB P;  4C3J L;  2R93 L;  1R9T L;  4A3D L;  3PO3 L;  3HOV L;  3GTM L;  5M3F L;  2WAQ P;  4BBR L;  5IYD L;  4A3J L;  3S16 L;  5M3M L;  4A3M L;  2JA8 L;  5M5W L;  4Y7N L;  3HOU L;  4BY1 L;  2JA5 L;  2NVY L;  3S1R L;  4C3I L;  3H3V M;  3S1Q L;  2E2H L;  2NVX L;  1I3Q L;  4A3E L;  2JA7 L;  5M5Y L;  1K83 L;  4A3G L;  2E2J L;  4A3C L;  3HOZ L;  3S2H L;  4A3I L;  2Y0S P;  3HOW L;  2VUM L;  5M5X L;  3S17 L;  3I4N L;  3S1M L;  4Y52 L;  2WB1 P;  2R7Z L; 
#chains in the Genus database with same CATH topology
 4AI1 A;  3GTK L;  1PFY A;  1DX8 A;  4YWM A;  3QQC E;  2NVQ L;  2JI2 A;  1YK5 A;  4AHZ A;  3RZD L;  2B63 L;  3PIO 1;  3B08 B;  1I50 L;  3HJW B;  3KYW A;  2HVY C;  5IYC L;  4C2M 1;  2M6O A;  1YUX A;  3FKI L;  1SFO L;  4UY8 1;  1Y1W L;  2KN9 A;  3LWQ B;  2YU9 L;  1OWB A;  2AYJ A;  1BQ9 A;  5C3E L;  2APO B;  5AI2 A;  3SS2 A;  6RXN A;  3RZT A;  1IW7 D;  1R0F A;  4C3H L;  3A44 A;  3WWN B;  3S1N L;  2V0F A;  5RXN A;  5EIO C;  1SMW A;  4BBR L;  1QYB A;  5IYD L;  2KKD A;  2JA8 L;  2XJV A;  5MFP A;  1H7V A;  2Z3R B;  5K2M E;  5M5Y L;  1K83 L;  4JAD A;  5MLC 3;  2E2J L;  4A3C L;  3LPE B;  4A3I L;  2Y0S P;  1ODH A;  5DM7 1;  3IU3 I;  5EIN C;  2C6A A;  3S17 L;  1S2Z A;  3PIP 1;  2XJP A;  4JAG A;  1WJV A;  2JA6 L;  4B8C D;  1WCM L;  3I4M L;  2MS3 A;  5IY0 A;  3KYU A;  4A93 L;  1PZX A;  1SMU A;  1TWA L;  4JAF A;  3GTO L;  3GTG L;  3S14 L;  2B5I D;  3GTL L;  3PO2 L;  4A3F L;  2HR5 A;  1RDG A;  1B2J A;  3J7Z 1;  2NVT L;  4BY7 L;  4BXX L;  1B2O A;  4A3K L;  4LHN A;  2M6P A;  1BE7 A;  4POG A;  4AR6 A;  1R0G A;  5H1S c;  5C4J L;  3LWP B;  2DSX A;  1YUZ A;  2M4Y A;  4AI0 A;  1PFW A;  3RZO L;  1TWH L;  5MFZ A;  3K35 A;  5C44 L;  2A6E D;  7RXN A;  3GTP L;  3MQK B;  1LTL A;  2AUS B;  1VCX A;  3RYG A;  1VZG A;  4AYB P;  4A3D L;  1FHH A;  2XJQ A;  1IRO A;  2C6B A;  5M3F L;  3HOV L;  4AI2 A;  4Y7N L;  3S1Q L;  4C3I L;  3H3V M;  2VL6 A;  2E2H L;  2NVX L;  1Z92 B;  2A6H D;  2JA7 L;  3ZG6 A;  4V19 6;  2A69 D;  4E6Y A;  3B0A B;  1VZH A;  2BE5 D;  3I4N L;  3H9B A;  5GAE c;  4Y52 L;  5MF6 A;  2CR8 A;  2K2D A;  3HAX C;  2WB1 P;  1VZI A;  3H0G L;  1P7P A;  2LCQ A;  5AI3 A;  1ZRP A;  2XJS A;  1F4L A;  2PVX A;  1R0J A;  1T9O A;  3JR7 A;  1T9P A;  1Y1V L;  4ME3 A;  3S2D L;  3HJY B;  5GAD c;  2AQC A;  1SMM A;  8RXN A;  1OWC A;  5FJ8 L;  1CAD A;  3FDJ A;  4XGH A;  1RWD A;  5IYB L;  1RYQ A;  4JAE A;  4TPU A;  2GMG A;  1PFV A;  2CKC A;  1TWG L;  4ZN3 B;  2RDV A;  5JVG 1;  2PMZ P;  1B71 A;  3GTQ L;  2QL0 A;  1YK4 A;  3HOY L;  2ERS A;  1TWC L;  2ERJ A;  3M3Y L;  1JYB A;  3P8B A;  3GTJ L;  3KYV A;  3P2A A;  4X6A L;  3MSU A;  1IU5 A;  4ZN1 B;  5IP9 L;  2R93 L;  1R9T L;  2J9U B;  2WAQ P;  4A3J L;  5M3M L;  1PFU A;  3PWF A;  2PPT A;  4BY1 L;  1CAA A;  2JA5 L;  3S1R L;  3QVD A;  4A3E L;  1BFY A;  5MGN A;  4XXB B;  1BRF A;  1RYT A;  4AHW A;  3LNL A;  3S2H L;  1LKM A;  4K9F A;  3HOW L;  2VUM L;  1NXG A;  4G6B A;  2H12 A;  4AHY A;  3KYX A;  2CKA A;  1R0I A;  2V0E A;  3J7Y 1;  1NXE A;  5GAG c;  3S1M L;  4AR4 A;  2RFK B;  1B13 A;  2R7Z L;  2PYA A;  4AR5 A;  5JVH 1;  1S30 A;  1YV1 A;  2JI1 A;  2L0Z A;  1IRN A;  3K7A L;  5IP7 L;  2XJU A;  1C09 A;  4TVM A;  1IU6 A;  4A3L L;  4GS7 D;  2O5J D;  3MPS A;  5FLM L;  4RXN A;  1BQ8 A;  1T9Q A;  3M4O L;  4LHL A;  3S15 L;  1DVB A;  2NYD A;  1S24 A;  2V3B B;  2PSM C;  3HKZ P;  3WWL A;  3HOX L;  1TWF L;  4A3B L;  1RB9 A;  3VPB E;  1NNQ A;  3LWO B;  1E8J A;  2M4V A;  4BBS L;  2R92 L;  3CQZ L;  4YWL A;  1I6H L;  3PZA A;  4QIW P;  3PKJ A;  5C4X L;  1FHM A;  3PKI A;  5DM6 1;  2PVE A;  3PL5 A;  2Z3Q B;  1R0H A;  2E2I L;  3H97 A;  3LWV B;  4C3J L;  2EY4 E;  4U67 1;  3PO3 L;  2ZIX A;  3GTM L;  1RDV A;  4AHX A;  4A3M L;  5M5W L;  3HOU L;  2XJT A;  2NVY L;  1I3Q L;  3RZ6 A;  4A3G L;  2XJR A;  3KYY A;  1LKP A;  3NFP I;  3HOZ L;  3H99 A;  3H9C A;  2JI3 A;  1LKO A;  3LWR B;  5AN9 H;  4POF A;  4AR3 A;  5M5X L;  1QCV A;  4AI3 A;  5GAH c;  4WFN 1;  1QQT A;  2A68 D;  3S16 L; 
#chains in the Genus database with same CATH homology
 2JA6 L;  3H0G L;  1WCM L;  3I4M L;  3GTK L;  3K7A L;  5IP7 L;  2NVQ L;  4A93 L;  4A3L L;  3RZD L;  5FLM L;  2B63 L;  1TWA L;  1Y1V L;  3GTO L;  3GTG L;  3S2D L;  3S14 L;  3M4O L;  3S15 L;  3GTL L;  3PO2 L;  4A3F L;  1I50 L;  4BY7 L;  3HKZ P;  2NVT L;  4BXX L;  5FJ8 L;  5IYC L;  4A3K L;  4C2M 1;  3HOX L;  1TWF L;  4A3B L;  3FKI L;  5IYB L;  1SFO L;  1Y1W L;  4BBS L;  1TWG L;  2YU9 L;  2PMZ P;  2R92 L;  3CQZ L;  5C3E L;  5C4J L;  3GTQ L;  1I6H L;  4QIW P;  5C4X L;  3HOY L;  1TWC L;  3M3Y L;  4C3H L;  3RZO L;  1TWH L;  5C44 L;  3GTJ L;  3S1N L;  3GTP L;  2E2I L;  4X6A L;  5IP9 L;  4AYB P;  4C3J L;  2R93 L;  1R9T L;  4A3D L;  3PO3 L;  3HOV L;  3GTM L;  5M3F L;  2WAQ P;  4BBR L;  5IYD L;  4A3J L;  3S16 L;  5M3M L;  4A3M L;  2JA8 L;  5M5W L;  4Y7N L;  3HOU L;  4BY1 L;  2JA5 L;  2NVY L;  3S1R L;  4C3I L;  3H3V M;  3S1Q L;  2E2H L;  2NVX L;  1I3Q L;  4A3E L;  2JA7 L;  5M5Y L;  1K83 L;  4A3G L;  2E2J L;  4A3C L;  3HOZ L;  3S2H L;  4A3I L;  2Y0S P;  3HOW L;  2VUM L;  5M5X L;  3S17 L;  3I4N L;  3S1M L;  4Y52 L;  2WB1 P;  2R7Z L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.