5M3FL

Yeast rna polymerase i elongation complex at 3.8a
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
44
structure length
44
Chain Sequence
LKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (31-34)S1 (29-31)Updating...
connected with : NaN
molecule tags Transcription
publication title Structure of RNA polymerase I transcribing ribosomal DNA genes.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase I subunit RPA190
total genus 1
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2016-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m3fL00
3M4OL 2PMZP 1TWFL 3CQZL 4A3JL 5IYBL 5C3EL 3GTGL 4Y7NL 4A93L 3GTOL 5M5WL 1TWGL 3S2HL 3S1RL 2YU9L 3GTLL 3HOZL 3S1ML 4BBSL 3S14L 3I4NL 3RZDL 3HOWL 4BY7L 4C3IL 3M3YL 5FJ8L 4A3FL 5IYCL 1I50L 2Y0SP 1Y1WL 5M3FL 3RZOL 4A3DL 3S17L 3HOVL 3S15L 1TWHL 3S16L 2VUML 3FKIL 4C2M1 1WCML 2JA7L 3PO2L 4A3LL 2R93L 3I4ML 3HKZP 2E2HL 1TWAL 3GTQL 3HOUL 3HOYL 4A3CL 4A3BL 5M5YL 4A3IL 4C3HL 2E2IL 4AYBP 5C4JL 2NVQL 5IYDL 2R92L 1I6HL 2JA5L 3H3VM 3HOXL 4C3JL 5C4XL 5FLML 2JA8L 3GTPL 2NVYL 5M5XL 2R7ZL 3H0GL 4BXXL 5C44L 4A3KL 3S1NL 2WAQP 4A3ML 3S1QL 5IP9L 4A3EL 2B63L 2NVTL 4BBRL 3GTKL 2JA6L 4BY1L 1Y1VL 1K83L 3K7AL 2NVXL 2WB1P 5IP7L 1TWCL 4QIWP 2E2JL 3GTML 1I3QL 1R9TL 1SFOL 4A3GL 3S2DL 3PO3L 5M3ML 3GTJL 4Y52L 4X6AL
chains in the Genus database with same CATH superfamily
4POGA 1TWFL 4A93L 1R0HA 2NYDA 6RXNA 5AI2A 4BBSL 5IY0A 3S14L 3I4NL 3HOWL 4BY7L 1H7VA 2V0EA 3P2AA 1R0JA 3M3YL 2C6AA 4A3FL 1I50L 2M4VA 5JVH1 4XGHA 5DM61 4AI1A 7RXNA 4A3DL 1SMMA 2AQCA 1ODHA 4ME3A 2XJSA 3PL5A 1TWHL 3FKIL 4C2M1 4A3LL 2R93L 2XJPA 1LKOA 4B8CD 3GTQL 3KYYA 1PFVA 4AR3A 3H9BA 3J7Y1 4JAEA 4UY81 1CADA 3ZG6A 1S24A 1NNQA 4A3IL 4C3HL 2E2IL 2KKDA 4AYBP 3KYUA 3PZAA 3VPBE 2XJVA 1I6HL 3PWFA 3H3VM 1VZIA 4C3JL 5FLML 5GAEc 2PVEA 5M5XL 2R7ZL 2RDVA 4AI2A 1IW7D 4G6BA 4A3ML 2HVYC 2V3BB 2K2DA 1T9OA 1RWDA 4YWLA 4A3EL 2JA6L 4BY1L 2LCQA 1K83L 3RZTA 3FDJA 3A44A 5GADc 1IROA 5AN9H 2CKCA 3GTML 1R9TL 1SFOL 4RXNA 3RZ6A 3IU3I 5EINC 1RYQA 2PPTA 5M3ML 4WFN1 1DX8A 3CQZL 3GTGL 1NXGA 4LHNA 2A68D 3S2HL 1B71A 1YK4A 2YU9L 1FHHA 3GTLL 2APOB 3QVDA 1R0IA 1RB9A 1YV1A 5K2ME 2MS3A 2VL6A 2L0ZA 2Z3QB 5M3FL 2CR8A 1PFYA 2ERSA 4AI0A 2VUML 1OWCA 2CKAA 2JA7L 4AR5A 2O5JD 3I4ML 3QQCE 3HOUL 4AI3A 2JI3A 8RXNA 1S2ZA 1B2JA 3H99A 3KYXA 4ZN3B 5C4JL 5IYDL 4AR4A 2GMGA 3GTPL 5MGNA 3MPSA 2PYAA 3WWLA 2M4YA 2XJUA 3S1QL 3HAXC 1RDVA 3PKJA 1P7PA 4BBRL 1Y1VL 4AR6A 3K7AL 1BQ9A 2NVXL 2WB1P 2RFKB 1S30A 1TWCL 1VCXA 5DM71 1RDGA 2AYJA 2Z3RB 4AHYA 2EY4E 3GTJL 2H12A 4X6AL 1E8JA 3M4OL 2PMZP 3JR7A 1IU5A 5IYBL 1QYBA 2ZIXA 1RYTA 4AHWA 1DVBA 3GTOL 1F4LA 4JAFA 5M5WL 2DSXA 1TWGL 5JVG1 1QQTA 3S1ML 1FHMA 2M6OA 5MF6A 3WWNB 1YUZA 5MFPA 3PIO1 3RZDL 1CAAA 4C3IL 5H1Sc 1YUXA 5IYCL 4AHZA 1B2OA 5GAGc 2Y0SP 1BFYA 5GAHc 1QCVA 2A6ED 2AUSB 1T9QA 3RZOL 2B5ID 1LKMA 2JI1A 3K35A 3HOVL 1LKPA 3B0AB 1PFWA 3LWQB 2XJTA 1JYBA 3PO2L 4E6YA 1R0FA 3HKZP 2E2HL 2C6BA 1BE7A 4A3BL 5M5YL 3J7Z1 4JAGA 1IU6A 4POFA 3SS2A 2NVQL 1R0GA 3LPEB 2R92L 1B13A 3HOXL 1SMUA 4TPUA 4GS7D 3H0GL 4A3KL 3S1NL 2WAQP 5IP9L 3LNLA 2B63L 2KN9A 4K9FA 3GTKL 2JI2A 2XJRA 5AI3A 1BRFA 5IP7L 2M6PA 4QIWP 1IRNA 5EIOC 3RYGA 1VZHA 1VZGA 4Y52L 4A3JL 5C3EL 4Y7NL 1SMWA 1NXEA 1WJVA 3S1RL 2PVXA 2HR5A 5MFZA 3HOZL 1ZRPA 5FJ8L 2XJQA 1Z92B 1Y1WL 4U671 3NFPI 3PKIA 3B08B 3S17L 3PIP1 3S15L 3S16L 1PZXA 1WCML 3KYVA 1TWAL 5MLC3 3HOYL 3LWRB 4A3CL 1C09A 3H9CA 1PFUA 3LWPB 2V0FA 2JA5L 5C4XL 3HJWB 2JA8L 3MQKB 1T9PA 3LWVB 2NVYL 4JADA 4BXXL 4XXBB 5C44L 1OWBA 2BE5D 3H97A 2NVTL 1YK5A 2PSMC 2J9UB 4V196 4YWMA 1BQ8A 3LWOB 4ZN1B 2ERJA 3P8BA 2A6HD 2E2JL 3HJYB 1I3QL 4TVMA 4A3GL 2QL0A 3S2DL 3PO3L 1LTLA 2A69D 3KYWA 5RXNA 4LHLA 4AHXA 3MSUA
chains in the Genus database with same CATH topology
3M4OL 2PMZP 1TWFL 3CQZL 4A3JL 5IYBL 5C3EL 3GTGL 4Y7NL 4A93L 3GTOL 5M5WL 1TWGL 3S2HL 3S1RL 2YU9L 3GTLL 3HOZL 3S1ML 4BBSL 3S14L 3I4NL 3RZDL 3HOWL 4BY7L 4C3IL 3M3YL 5FJ8L 4A3FL 5IYCL 1I50L 2Y0SP 1Y1WL 5M3FL 3RZOL 4A3DL 3S17L 3HOVL 3S15L 1TWHL 3S16L 2VUML 3FKIL 4C2M1 1WCML 2JA7L 3PO2L 4A3LL 2R93L 3I4ML 3HKZP 2E2HL 1TWAL 3GTQL 3HOUL 3HOYL 4A3CL 4A3BL 5M5YL 4A3IL 4C3HL 2E2IL 4AYBP 5C4JL 2NVQL 5IYDL 2R92L 1I6HL 2JA5L 3H3VM 3HOXL 4C3JL 5C4XL 5FLML 2JA8L 3GTPL 2NVYL 5M5XL 2R7ZL 3H0GL 4BXXL 5C44L 4A3KL 3S1NL 2WAQP 4A3ML 3S1QL 5IP9L 4A3EL 2B63L 2NVTL 4BBRL 3GTKL 2JA6L 4BY1L 1Y1VL 1K83L 3K7AL 2NVXL 2WB1P 5IP7L 1TWCL 4QIWP 2E2JL 3GTML 1I3QL 1R9TL 1SFOL 4A3GL 3S2DL 3PO3L 5M3ML 3GTJL 4Y52L 4X6AL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M4O L;  2PMZ P;  1TWF L;  3CQZ L;  4A3J L;  5IYB L;  5C3E L;  3GTG L;  4Y7N L;  4A93 L;  3GTO L;  5M5W L;  1TWG L;  3S2H L;  3S1R L;  2YU9 L;  3GTL L;  3HOZ L;  3S1M L;  4BBS L;  3S14 L;  3I4N L;  3RZD L;  3HOW L;  4BY7 L;  4C3I L;  3M3Y L;  5FJ8 L;  4A3F L;  5IYC L;  1I50 L;  2Y0S P;  1Y1W L;  5M3F L;  3RZO L;  4A3D L;  3S17 L;  3HOV L;  3S15 L;  1TWH L;  3S16 L;  2VUM L;  3FKI L;  4C2M 1;  1WCM L;  2JA7 L;  3PO2 L;  4A3L L;  2R93 L;  3I4M L;  3HKZ P;  2E2H L;  1TWA L;  3GTQ L;  3HOU L;  3HOY L;  4A3C L;  4A3B L;  5M5Y L;  4A3I L;  4C3H L;  2E2I L;  4AYB P;  5C4J L;  2NVQ L;  5IYD L;  2R92 L;  1I6H L;  2JA5 L;  3H3V M;  3HOX L;  4C3J L;  5C4X L;  5FLM L;  2JA8 L;  3GTP L;  2NVY L;  5M5X L;  2R7Z L;  3H0G L;  4BXX L;  5C44 L;  4A3K L;  3S1N L;  2WAQ P;  4A3M L;  3S1Q L;  5IP9 L;  4A3E L;  2B63 L;  2NVT L;  4BBR L;  3GTK L;  2JA6 L;  4BY1 L;  1Y1V L;  1K83 L;  3K7A L;  2NVX L;  2WB1 P;  5IP7 L;  1TWC L;  4QIW P;  2E2J L;  3GTM L;  1I3Q L;  1R9T L;  1SFO L;  4A3G L;  3S2D L;  3PO3 L;  5M3M L;  3GTJ L;  4Y52 L;  4X6A L; 
#chains in the Genus database with same CATH topology
 4POG A;  1TWF L;  4A93 L;  1R0H A;  2NYD A;  6RXN A;  5AI2 A;  4BBS L;  5IY0 A;  3S14 L;  3I4N L;  3HOW L;  4BY7 L;  1H7V A;  2V0E A;  3P2A A;  1R0J A;  3M3Y L;  2C6A A;  4A3F L;  1I50 L;  2M4V A;  5JVH 1;  4XGH A;  5DM6 1;  4AI1 A;  7RXN A;  4A3D L;  1SMM A;  2AQC A;  1ODH A;  4ME3 A;  2XJS A;  3PL5 A;  1TWH L;  3FKI L;  4C2M 1;  4A3L L;  2R93 L;  2XJP A;  1LKO A;  4B8C D;  3GTQ L;  3KYY A;  1PFV A;  4AR3 A;  3H9B A;  3J7Y 1;  4JAE A;  4UY8 1;  1CAD A;  3ZG6 A;  1S24 A;  1NNQ A;  4A3I L;  4C3H L;  2E2I L;  2KKD A;  4AYB P;  3KYU A;  3PZA A;  3VPB E;  2XJV A;  1I6H L;  3PWF A;  3H3V M;  1VZI A;  4C3J L;  5FLM L;  5GAE c;  2PVE A;  5M5X L;  2R7Z L;  2RDV A;  4AI2 A;  1IW7 D;  4G6B A;  4A3M L;  2HVY C;  2V3B B;  2K2D A;  1T9O A;  1RWD A;  4YWL A;  4A3E L;  2JA6 L;  4BY1 L;  2LCQ A;  1K83 L;  3RZT A;  3FDJ A;  3A44 A;  5GAD c;  1IRO A;  5AN9 H;  2CKC A;  3GTM L;  1R9T L;  1SFO L;  4RXN A;  3RZ6 A;  3IU3 I;  5EIN C;  1RYQ A;  2PPT A;  5M3M L;  4WFN 1;  1DX8 A;  3CQZ L;  3GTG L;  1NXG A;  4LHN A;  2A68 D;  3S2H L;  1B71 A;  1YK4 A;  2YU9 L;  1FHH A;  3GTL L;  2APO B;  3QVD A;  1R0I A;  1RB9 A;  1YV1 A;  5K2M E;  2MS3 A;  2VL6 A;  2L0Z A;  2Z3Q B;  5M3F L;  2CR8 A;  1PFY A;  2ERS A;  4AI0 A;  2VUM L;  1OWC A;  2CKA A;  2JA7 L;  4AR5 A;  2O5J D;  3I4M L;  3QQC E;  3HOU L;  4AI3 A;  2JI3 A;  8RXN A;  1S2Z A;  1B2J A;  3H99 A;  3KYX A;  4ZN3 B;  5C4J L;  5IYD L;  4AR4 A;  2GMG A;  3GTP L;  5MGN A;  3MPS A;  2PYA A;  3WWL A;  2M4Y A;  2XJU A;  3S1Q L;  3HAX C;  1RDV A;  3PKJ A;  1P7P A;  4BBR L;  1Y1V L;  4AR6 A;  3K7A L;  1BQ9 A;  2NVX L;  2WB1 P;  2RFK B;  1S30 A;  1TWC L;  1VCX A;  5DM7 1;  1RDG A;  2AYJ A;  2Z3R B;  4AHY A;  2EY4 E;  3GTJ L;  2H12 A;  4X6A L;  1E8J A;  3M4O L;  2PMZ P;  3JR7 A;  1IU5 A;  5IYB L;  1QYB A;  2ZIX A;  1RYT A;  4AHW A;  1DVB A;  3GTO L;  1F4L A;  4JAF A;  5M5W L;  2DSX A;  1TWG L;  5JVG 1;  1QQT A;  3S1M L;  1FHM A;  2M6O A;  5MF6 A;  3WWN B;  1YUZ A;  5MFP A;  3PIO 1;  3RZD L;  1CAA A;  4C3I L;  5H1S c;  1YUX A;  5IYC L;  4AHZ A;  1B2O A;  5GAG c;  2Y0S P;  1BFY A;  5GAH c;  1QCV A;  2A6E D;  2AUS B;  1T9Q A;  3RZO L;  2B5I D;  1LKM A;  2JI1 A;  3K35 A;  3HOV L;  1LKP A;  3B0A B;  1PFW A;  3LWQ B;  2XJT A;  1JYB A;  3PO2 L;  4E6Y A;  1R0F A;  3HKZ P;  2E2H L;  2C6B A;  1BE7 A;  4A3B L;  5M5Y L;  3J7Z 1;  4JAG A;  1IU6 A;  4POF A;  3SS2 A;  2NVQ L;  1R0G A;  3LPE B;  2R92 L;  1B13 A;  3HOX L;  1SMU A;  4TPU A;  4GS7 D;  3H0G L;  4A3K L;  3S1N L;  2WAQ P;  5IP9 L;  3LNL A;  2B63 L;  2KN9 A;  4K9F A;  3GTK L;  2JI2 A;  2XJR A;  5AI3 A;  1BRF A;  5IP7 L;  2M6P A;  4QIW P;  1IRN A;  5EIO C;  3RYG A;  1VZH A;  1VZG A;  4Y52 L;  4A3J L;  5C3E L;  4Y7N L;  1SMW A;  1NXE A;  1WJV A;  3S1R L;  2PVX A;  2HR5 A;  5MFZ A;  3HOZ L;  1ZRP A;  5FJ8 L;  2XJQ A;  1Z92 B;  1Y1W L;  4U67 1;  3NFP I;  3PKI A;  3B08 B;  3S17 L;  3PIP 1;  3S15 L;  3S16 L;  1PZX A;  1WCM L;  3KYV A;  1TWA L;  5MLC 3;  3HOY L;  3LWR B;  4A3C L;  1C09 A;  3H9C A;  1PFU A;  3LWP B;  2V0F A;  2JA5 L;  5C4X L;  3HJW B;  2JA8 L;  3MQK B;  1T9P A;  3LWV B;  2NVY L;  4JAD A;  4BXX L;  4XXB B;  5C44 L;  1OWB A;  2BE5 D;  3H97 A;  2NVT L;  1YK5 A;  2PSM C;  2J9U B;  4V19 6;  4YWM A;  1BQ8 A;  3LWO B;  4ZN1 B;  2ERJ A;  3P8B A;  2A6H D;  2E2J L;  3HJY B;  1I3Q L;  4TVM A;  4A3G L;  2QL0 A;  3S2D L;  3PO3 L;  1LTL A;  2A69 D;  3KYW A;  5RXN A;  4LHL A;  4AHX A;  3MSU A; 
#chains in the Genus database with same CATH homology
 3M4O L;  2PMZ P;  1TWF L;  3CQZ L;  4A3J L;  5IYB L;  5C3E L;  3GTG L;  4Y7N L;  4A93 L;  3GTO L;  5M5W L;  1TWG L;  3S2H L;  3S1R L;  2YU9 L;  3GTL L;  3HOZ L;  3S1M L;  4BBS L;  3S14 L;  3I4N L;  3RZD L;  3HOW L;  4BY7 L;  4C3I L;  3M3Y L;  5FJ8 L;  4A3F L;  5IYC L;  1I50 L;  2Y0S P;  1Y1W L;  5M3F L;  3RZO L;  4A3D L;  3S17 L;  3HOV L;  3S15 L;  1TWH L;  3S16 L;  2VUM L;  3FKI L;  4C2M 1;  1WCM L;  2JA7 L;  3PO2 L;  4A3L L;  2R93 L;  3I4M L;  3HKZ P;  2E2H L;  1TWA L;  3GTQ L;  3HOU L;  3HOY L;  4A3C L;  4A3B L;  5M5Y L;  4A3I L;  4C3H L;  2E2I L;  4AYB P;  5C4J L;  2NVQ L;  5IYD L;  2R92 L;  1I6H L;  2JA5 L;  3H3V M;  3HOX L;  4C3J L;  5C4X L;  5FLM L;  2JA8 L;  3GTP L;  2NVY L;  5M5X L;  2R7Z L;  3H0G L;  4BXX L;  5C44 L;  4A3K L;  3S1N L;  2WAQ P;  4A3M L;  3S1Q L;  5IP9 L;  4A3E L;  2B63 L;  2NVT L;  4BBR L;  3GTK L;  2JA6 L;  4BY1 L;  1Y1V L;  1K83 L;  3K7A L;  2NVX L;  2WB1 P;  5IP7 L;  1TWC L;  4QIW P;  2E2J L;  3GTM L;  1I3Q L;  1R9T L;  1SFO L;  4A3G L;  3S2D L;  3PO3 L;  5M3M L;  3GTJ L;  4Y52 L;  4X6A L; 
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