5M5WL

Rna polymerase i open complex
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
43
structure length
43
Chain Sequence
KYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (31-34)S1 (29-31)Updating...
connected with : NaN
molecule tags Transcription
publication title Molecular Structures of Transcribing RNA Polymerase I.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase I subunit RPA190
total genus 1
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2016-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m5wL00
2WAQP 4QIWP 3FKIL 3I4NL 5M5XL 1TWAL 3HOZL 5C44L 4A3BL 4A3GL 1I6HL 2NVQL 3S16L 1Y1WL 2R92L 4C2M1 2VUML 2JA8L 4BBSL 3GTML 5IYBL 4BXXL 4Y52L 4Y7NL 5M5YL 5IP7L 3PO2L 3S1QL 4C3IL 4A3FL 2R93L 1SFOL 3GTOL 5IP9L 3I4ML 2WB1P 2JA6L 1R9TL 3GTKL 3M3YL 4A3CL 4X6AL 2JA7L 4A3KL 4A3DL 4BBRL 1TWGL 3GTQL 5M3FL 3GTLL 3S15L 3S1ML 5C4XL 3S14L 3S1NL 2Y0SP 5M3ML 2YU9L 3H0GL 4C3HL 2NVXL 3HOUL 3GTJL 1TWHL 3HKZP 3GTPL 3GTGL 1WCML 1TWCL 1K83L 2JA5L 3HOWL 3CQZL 2E2HL 3RZOL 2B63L 3RZDL 3S17L 3H3VM 2PMZP 5C3EL 2R7ZL 3M4OL 3S1RL 5FLML 5IYCL 5IYDL 5C4JL 3HOXL 2E2JL 4A3JL 2NVTL 4AYBP 5M5WL 3PO3L 3S2DL 1Y1VL 2E2IL 3K7AL 3HOVL 4A93L 2NVYL 4A3LL 4BY7L 4C3JL 4A3IL 5FJ8L 4BY1L 1I50L 3S2HL 1I3QL 1TWFL 4A3EL 3HOYL 4A3ML
chains in the Genus database with same CATH superfamily
2JI1A 3KYUA 1TWAL 1OWBA 3RYGA 5C44L 4A3BL 2NVQL 3S16L 1B2OA 6RXNA 2VUML 2ZIXA 4BXXL 3MSUA 3PIO1 1R0GA 4Y7NL 3RZ6A 2ERJA 3SS2A 1SFOL 1BFYA 3PL5A 1BRFA 2Z3QB 2JA6L 4POGA 4AR3A 4A3DL 4BBRL 3GTLL 4JAGA 1YV1A 5C4XL 1IRNA 2XJSA 2ERSA 5MFZA 2YU9L 5EINC 3H0GL 4C3HL 2NVXL 1RDGA 1DVBA 3KYXA 4AHYA 2HR5A 2KKDA 1K83L 3PKIA 3RZTA 1YUXA 7RXNA 1R0IA 2H12A 5C3EL 3VPBE 5FLML 2E2JL 3KYVA 4AYBP 2CKCA 5M5WL 2DSXA 1RDVA 3S2DL 2E2IL 1R0JA 1BQ9A 1RWDA 2NVYL 4BY7L 1NXGA 3S2HL 5GAHc 1YUZA 8RXNA 1VZGA 3LWQB 1IROA 4ME3A 2EY4E 4AI1A 5GAGc 2J9UB 2WAQP 2LCQA 2KN9A 2HVYC 3LWOB 1RYQA 3LWVB 1QQTA 1I6HL 5EIOC 2PYAA 2JA8L 1LKPA 2RFKB 4AI3A 2K2DA 1DX8A 3QVDA 3H9BA 1B13A 3PO2L 2M6PA 4A3FL 4LHNA 1S24A 1R9TL 4A3CL 2AUSB 2XJRA 1S2ZA 1TWGL 3LPEB 4E6YA 5MFPA 5MF6A 1CAAA 3S1NL 4V196 3LNLA 4AHWA 1PZXA 2L0ZA 3A44A 5AN9H 3J7Y1 3PZAA 1YK4A 5K2ME 4YWMA 3LWPB 2E2HL 4U671 4GS7D 1RYTA 2A69D 2AQCA 1IW7D 5IYCL 3HOXL 4A3JL 3WWLA 4AR5A 1ZRPA 1CADA 1PFVA 2O5JD 1NNQA 3HOVL 4A93L 4A3LL 4C3JL 3P2AA 1I3QL 1TWFL 2JI2A 5RXNA 3MQKB 1T9QA 2M4YA 2NYDA 3P8BA 4JADA 4A3ML 3HOYL 1LTLA 4QIWP 3FKIL 3I4NL 1S30A 5M5XL 1VCXA 2APOB 2XJPA 4ZN1B 1Y1WL 5MGNA 1RB9A 4ZN3B 4BBSL 1H7VA 1LKOA 5IYBL 4Y52L 5JVH1 4C3IL 2R93L 4UY81 2WB1P 3HJYB 5H1Sc 1BE7A 1PFWA 3GTKL 4X6AL 4A3KL 4RXNA 3GTQL 4B8CD 3H9CA 2CR8A 3JR7A 3S15L 3S1ML 3S14L 2AYJA 5IY0A 3IU3I 1IU5A 1TWHL 2RDVA 3GTGL 1JYBA 1WCML 1PFYA 3WWNB 4AR6A 3HOWL 3LWRB 3CQZL 2A6ED 4AR4A 1YK5A 3RZDL 2V0EA 3H3VM 4LHLA 2PMZP 2R7ZL 5GADc 3S1RL 3J7Z1 5C4JL 1NXEA 5IYDL 2XJUA 4TVMA 2QL0A 3H99A 4AI0A 2PVXA 2A68D 5MLC3 4A3IL 1SMUA 5FJ8L 1I50L 5DM61 4XGHA 2PVEA 2XJTA 1R0FA 2Z3RB 3PO3L 1IU6A 2GMGA 3H97A 3HOZL 3PKJA 4A3GL 1T9OA 1Z92B 1FHMA 2M6OA 2R92L 4C2M1 2JI3A 5AI3A 2XJQA 3GTML 1QYBA 1ODHA 4YWLA 4POFA 5M5YL 5IP7L 3S1QL 3HJWB 3GTOL 5IP9L 3ZG6A 3I4ML 4G6BA 3M3YL 2V0FA 1VZIA 3B0AB 2JA7L 5DM71 3K35A 1B2JA 3PIP1 5M3FL 5AI2A 3MPSA 1P7PA 3FDJA 4WFN1 2MS3A 4K9FA 1FHHA 2CKAA 2Y0SP 5M3ML 1B71A 4JAEA 2C6BA 3HOUL 2PSMC 3B08B 3GTJL 3QQCE 3HKZP 2BE5D 1WJVA 2C6AA 3GTPL 1TWCL 1T9PA 3NFPI 1VZHA 1LKMA 2JA5L 3PWFA 3HAXC 4JAFA 3RZOL 2B63L 1SMMA 1QCVA 3S17L 4AI2A 4AHXA 3M4OL 1SMWA 1R0HA 1BQ8A 1OWCA 2NVTL 5JVG1 1Y1VL 2V3BB 2A6HD 1PFUA 2PPTA 4TPUA 3K7AL 2M4VA 4XXBB 2B5ID 1C09A 4BY1L 1E8JA 2VL6A 3KYWA 4AHZA 5GAEc 3KYYA 2XJVA 1F4LA 4A3EL
chains in the Genus database with same CATH topology
2WAQP 4QIWP 3FKIL 3I4NL 5M5XL 1TWAL 3HOZL 5C44L 4A3BL 4A3GL 1I6HL 2NVQL 3S16L 1Y1WL 2R92L 4C2M1 2VUML 2JA8L 4BBSL 3GTML 5IYBL 4BXXL 4Y52L 4Y7NL 5M5YL 5IP7L 3PO2L 3S1QL 4C3IL 4A3FL 2R93L 1SFOL 3GTOL 5IP9L 3I4ML 2WB1P 2JA6L 1R9TL 3GTKL 3M3YL 4A3CL 4X6AL 2JA7L 4A3KL 4A3DL 4BBRL 1TWGL 3GTQL 5M3FL 3GTLL 3S15L 3S1ML 5C4XL 3S14L 3S1NL 2Y0SP 5M3ML 2YU9L 3H0GL 4C3HL 2NVXL 3HOUL 3GTJL 1TWHL 3HKZP 3GTPL 3GTGL 1WCML 1TWCL 1K83L 2JA5L 3HOWL 3CQZL 2E2HL 3RZOL 2B63L 3RZDL 3S17L 3H3VM 2PMZP 5C3EL 2R7ZL 3M4OL 3S1RL 5FLML 5IYCL 5IYDL 5C4JL 3HOXL 2E2JL 4A3JL 2NVTL 4AYBP 5M5WL 3PO3L 3S2DL 1Y1VL 2E2IL 3K7AL 3HOVL 4A93L 2NVYL 4A3LL 4BY7L 4C3JL 4A3IL 5FJ8L 4BY1L 1I50L 3S2HL 1I3QL 1TWFL 4A3EL 3HOYL 4A3ML
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WAQ P;  4QIW P;  3FKI L;  3I4N L;  5M5X L;  1TWA L;  3HOZ L;  5C44 L;  4A3B L;  4A3G L;  1I6H L;  2NVQ L;  3S16 L;  1Y1W L;  2R92 L;  4C2M 1;  2VUM L;  2JA8 L;  4BBS L;  3GTM L;  5IYB L;  4BXX L;  4Y52 L;  4Y7N L;  5M5Y L;  5IP7 L;  3PO2 L;  3S1Q L;  4C3I L;  4A3F L;  2R93 L;  1SFO L;  3GTO L;  5IP9 L;  3I4M L;  2WB1 P;  2JA6 L;  1R9T L;  3GTK L;  3M3Y L;  4A3C L;  4X6A L;  2JA7 L;  4A3K L;  4A3D L;  4BBR L;  1TWG L;  3GTQ L;  5M3F L;  3GTL L;  3S15 L;  3S1M L;  5C4X L;  3S14 L;  3S1N L;  2Y0S P;  5M3M L;  2YU9 L;  3H0G L;  4C3H L;  2NVX L;  3HOU L;  3GTJ L;  1TWH L;  3HKZ P;  3GTP L;  3GTG L;  1WCM L;  1TWC L;  1K83 L;  2JA5 L;  3HOW L;  3CQZ L;  2E2H L;  3RZO L;  2B63 L;  3RZD L;  3S17 L;  3H3V M;  2PMZ P;  5C3E L;  2R7Z L;  3M4O L;  3S1R L;  5FLM L;  5IYC L;  5IYD L;  5C4J L;  3HOX L;  2E2J L;  4A3J L;  2NVT L;  4AYB P;  5M5W L;  3PO3 L;  3S2D L;  1Y1V L;  2E2I L;  3K7A L;  3HOV L;  4A93 L;  2NVY L;  4A3L L;  4BY7 L;  4C3J L;  4A3I L;  5FJ8 L;  4BY1 L;  1I50 L;  3S2H L;  1I3Q L;  1TWF L;  4A3E L;  3HOY L;  4A3M L; 
#chains in the Genus database with same CATH topology
 2JI1 A;  3KYU A;  1TWA L;  1OWB A;  3RYG A;  5C44 L;  4A3B L;  2NVQ L;  3S16 L;  1B2O A;  6RXN A;  2VUM L;  2ZIX A;  4BXX L;  3MSU A;  3PIO 1;  1R0G A;  4Y7N L;  3RZ6 A;  2ERJ A;  3SS2 A;  1SFO L;  1BFY A;  3PL5 A;  1BRF A;  2Z3Q B;  2JA6 L;  4POG A;  4AR3 A;  4A3D L;  4BBR L;  3GTL L;  4JAG A;  1YV1 A;  5C4X L;  1IRN A;  2XJS A;  2ERS A;  5MFZ A;  2YU9 L;  5EIN C;  3H0G L;  4C3H L;  2NVX L;  1RDG A;  1DVB A;  3KYX A;  4AHY A;  2HR5 A;  2KKD A;  1K83 L;  3PKI A;  3RZT A;  1YUX A;  7RXN A;  1R0I A;  2H12 A;  5C3E L;  3VPB E;  5FLM L;  2E2J L;  3KYV A;  4AYB P;  2CKC A;  5M5W L;  2DSX A;  1RDV A;  3S2D L;  2E2I L;  1R0J A;  1BQ9 A;  1RWD A;  2NVY L;  4BY7 L;  1NXG A;  3S2H L;  5GAH c;  1YUZ A;  8RXN A;  1VZG A;  3LWQ B;  1IRO A;  4ME3 A;  2EY4 E;  4AI1 A;  5GAG c;  2J9U B;  2WAQ P;  2LCQ A;  2KN9 A;  2HVY C;  3LWO B;  1RYQ A;  3LWV B;  1QQT A;  1I6H L;  5EIO C;  2PYA A;  2JA8 L;  1LKP A;  2RFK B;  4AI3 A;  2K2D A;  1DX8 A;  3QVD A;  3H9B A;  1B13 A;  3PO2 L;  2M6P A;  4A3F L;  4LHN A;  1S24 A;  1R9T L;  4A3C L;  2AUS B;  2XJR A;  1S2Z A;  1TWG L;  3LPE B;  4E6Y A;  5MFP A;  5MF6 A;  1CAA A;  3S1N L;  4V19 6;  3LNL A;  4AHW A;  1PZX A;  2L0Z A;  3A44 A;  5AN9 H;  3J7Y 1;  3PZA A;  1YK4 A;  5K2M E;  4YWM A;  3LWP B;  2E2H L;  4U67 1;  4GS7 D;  1RYT A;  2A69 D;  2AQC A;  1IW7 D;  5IYC L;  3HOX L;  4A3J L;  3WWL A;  4AR5 A;  1ZRP A;  1CAD A;  1PFV A;  2O5J D;  1NNQ A;  3HOV L;  4A93 L;  4A3L L;  4C3J L;  3P2A A;  1I3Q L;  1TWF L;  2JI2 A;  5RXN A;  3MQK B;  1T9Q A;  2M4Y A;  2NYD A;  3P8B A;  4JAD A;  4A3M L;  3HOY L;  1LTL A;  4QIW P;  3FKI L;  3I4N L;  1S30 A;  5M5X L;  1VCX A;  2APO B;  2XJP A;  4ZN1 B;  1Y1W L;  5MGN A;  1RB9 A;  4ZN3 B;  4BBS L;  1H7V A;  1LKO A;  5IYB L;  4Y52 L;  5JVH 1;  4C3I L;  2R93 L;  4UY8 1;  2WB1 P;  3HJY B;  5H1S c;  1BE7 A;  1PFW A;  3GTK L;  4X6A L;  4A3K L;  4RXN A;  3GTQ L;  4B8C D;  3H9C A;  2CR8 A;  3JR7 A;  3S15 L;  3S1M L;  3S14 L;  2AYJ A;  5IY0 A;  3IU3 I;  1IU5 A;  1TWH L;  2RDV A;  3GTG L;  1JYB A;  1WCM L;  1PFY A;  3WWN B;  4AR6 A;  3HOW L;  3LWR B;  3CQZ L;  2A6E D;  4AR4 A;  1YK5 A;  3RZD L;  2V0E A;  3H3V M;  4LHL A;  2PMZ P;  2R7Z L;  5GAD c;  3S1R L;  3J7Z 1;  5C4J L;  1NXE A;  5IYD L;  2XJU A;  4TVM A;  2QL0 A;  3H99 A;  4AI0 A;  2PVX A;  2A68 D;  5MLC 3;  4A3I L;  1SMU A;  5FJ8 L;  1I50 L;  5DM6 1;  4XGH A;  2PVE A;  2XJT A;  1R0F A;  2Z3R B;  3PO3 L;  1IU6 A;  2GMG A;  3H97 A;  3HOZ L;  3PKJ A;  4A3G L;  1T9O A;  1Z92 B;  1FHM A;  2M6O A;  2R92 L;  4C2M 1;  2JI3 A;  5AI3 A;  2XJQ A;  3GTM L;  1QYB A;  1ODH A;  4YWL A;  4POF A;  5M5Y L;  5IP7 L;  3S1Q L;  3HJW B;  3GTO L;  5IP9 L;  3ZG6 A;  3I4M L;  4G6B A;  3M3Y L;  2V0F A;  1VZI A;  3B0A B;  2JA7 L;  5DM7 1;  3K35 A;  1B2J A;  3PIP 1;  5M3F L;  5AI2 A;  3MPS A;  1P7P A;  3FDJ A;  4WFN 1;  2MS3 A;  4K9F A;  1FHH A;  2CKA A;  2Y0S P;  5M3M L;  1B71 A;  4JAE A;  2C6B A;  3HOU L;  2PSM C;  3B08 B;  3GTJ L;  3QQC E;  3HKZ P;  2BE5 D;  1WJV A;  2C6A A;  3GTP L;  1TWC L;  1T9P A;  3NFP I;  1VZH A;  1LKM A;  2JA5 L;  3PWF A;  3HAX C;  4JAF A;  3RZO L;  2B63 L;  1SMM A;  1QCV A;  3S17 L;  4AI2 A;  4AHX A;  3M4O L;  1SMW A;  1R0H A;  1BQ8 A;  1OWC A;  2NVT L;  5JVG 1;  1Y1V L;  2V3B B;  2A6H D;  1PFU A;  2PPT A;  4TPU A;  3K7A L;  2M4V A;  4XXB B;  2B5I D;  1C09 A;  4BY1 L;  1E8J A;  2VL6 A;  3KYW A;  4AHZ A;  5GAE c;  3KYY A;  2XJV A;  1F4L A;  4A3E L; 
#chains in the Genus database with same CATH homology
 2WAQ P;  4QIW P;  3FKI L;  3I4N L;  5M5X L;  1TWA L;  3HOZ L;  5C44 L;  4A3B L;  4A3G L;  1I6H L;  2NVQ L;  3S16 L;  1Y1W L;  2R92 L;  4C2M 1;  2VUM L;  2JA8 L;  4BBS L;  3GTM L;  5IYB L;  4BXX L;  4Y52 L;  4Y7N L;  5M5Y L;  5IP7 L;  3PO2 L;  3S1Q L;  4C3I L;  4A3F L;  2R93 L;  1SFO L;  3GTO L;  5IP9 L;  3I4M L;  2WB1 P;  2JA6 L;  1R9T L;  3GTK L;  3M3Y L;  4A3C L;  4X6A L;  2JA7 L;  4A3K L;  4A3D L;  4BBR L;  1TWG L;  3GTQ L;  5M3F L;  3GTL L;  3S15 L;  3S1M L;  5C4X L;  3S14 L;  3S1N L;  2Y0S P;  5M3M L;  2YU9 L;  3H0G L;  4C3H L;  2NVX L;  3HOU L;  3GTJ L;  1TWH L;  3HKZ P;  3GTP L;  3GTG L;  1WCM L;  1TWC L;  1K83 L;  2JA5 L;  3HOW L;  3CQZ L;  2E2H L;  3RZO L;  2B63 L;  3RZD L;  3S17 L;  3H3V M;  2PMZ P;  5C3E L;  2R7Z L;  3M4O L;  3S1R L;  5FLM L;  5IYC L;  5IYD L;  5C4J L;  3HOX L;  2E2J L;  4A3J L;  2NVT L;  4AYB P;  5M5W L;  3PO3 L;  3S2D L;  1Y1V L;  2E2I L;  3K7A L;  3HOV L;  4A93 L;  2NVY L;  4A3L L;  4BY7 L;  4C3J L;  4A3I L;  5FJ8 L;  4BY1 L;  1I50 L;  3S2H L;  1I3Q L;  1TWF L;  4A3E L;  3HOY L;  4A3M L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.