5M5YL

Rna polymerase i elongation complex 2
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
43
structure length
43
Chain Sequence
KYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (31-34)S1 (29-30)TIV1 (41-44)Updating...
connected with : NaN
molecule tags Transcription
publication title Molecular Structures of Transcribing RNA Polymerase I.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase I subunit RPA190
total genus 3
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2016-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5m5yL00
5C44L 4AYBP 3PO3L 2B63L 3RZOL 3GTOL 4Y52L 2R93L 2JA5L 3HKZP 1Y1VL 3I4ML 3S2HL 2E2JL 2R92L 5M5YL 2VUML 3H3VM 1SFOL 5FLML 3GTGL 2JA8L 3S1NL 5IYDL 1I50L 5M5XL 1TWFL 3HOYL 1K83L 2E2HL 3S1QL 3S16L 3CQZL 4A3IL 2NVQL 4A3BL 4A3FL 5IYBL 3M3YL 3I4NL 4BBSL 4C3JL 3GTML 2JA6L 1R9TL 4A93L 4BY1L 5M5WL 4Y7NL 3PO2L 5FJ8L 3H0GL 4BBRL 3S1RL 1TWGL 5IYCL 3FKIL 5M3FL 4A3KL 3GTKL 4QIWP 1TWAL 3HOZL 3K7AL 5IP7L 4A3LL 5M3ML 3HOXL 2NVXL 3S15L 4X6AL 2WAQP 2NVTL 4BXXL 3RZDL 3GTLL 1WCML 3S2DL 5C4JL 2R7ZL 4A3GL 5C4XL 2Y0SP 5IP9L 4A3CL 4A3JL 2JA7L 1Y1WL 2YU9L 3S17L 2WB1P 3M4OL 3S14L 4BY7L 3HOWL 2E2IL 4A3EL 4A3DL 5C3EL 1TWCL 3GTQL 3GTJL 3S1ML 4C2M1 1I3QL 2NVYL 1TWHL 1I6HL 3HOUL 2PMZP 4A3ML 3HOVL 4C3IL 3GTPL 4C3HL
chains in the Genus database with same CATH superfamily
1B2JA 4AYBP 1CADA 1S2ZA 1JYBA 5GAHc 4XGHA 3LNLA 2R92L 1IU6A 5GAEc 2A6ED 4AI1A 1IRNA 1SFOL 3GTGL 1I50L 2JI3A 1TWFL 1R0HA 2E2HL 3S1QL 4G6BA 2XJUA 2NVQL 1LKPA 3M3YL 4U671 4A93L 5RXNA 2J9UB 2V3BB 1DX8A 4AHYA 1YUXA 2XJPA 5DM71 6RXNA 5IYCL 3RZ6A 1B13A 4GS7D 4QIWP 4AI0A 4YWLA 2C6BA 4AI2A 5IP7L 4ME3A 2M6PA 4JAGA 4LHNA 1LKOA 2WAQP 2PSMC 1VCXA 1F4LA 3RZTA 3J7Y1 2LCQA 5GADc 1NXEA 2MS3A 4A3CL 4A3JL 1Y1WL 1LKMA 1FHMA 2M4VA 5K2ME 2L0ZA 2K2DA 5MF6A 4RXNA 5JVH1 4BY7L 2V0EA 5EIOC 1QCVA 4A3EL 3HJWB 1YK5A 8RXNA 4C2M1 2KN9A 1I3QL 2PMZP 4C3IL 1T9OA 1R0IA 2RFKB 2M6OA 3NFPI 1RDVA 1E8JA 4AHWA 2C6AA 5C44L 2AUSB 3H99A 3GTOL 4V196 4Y52L 1T9PA 2CR8A 2DSXA 1PFVA 2H12A 1C09A 4AR5A 5FLML 3S1NL 1FHHA 1B71A 5M5XL 3HOYL 5JVG1 1SMUA 3QVDA 3S16L 1R0JA 1R0FA 3WWNB 5MGNA 5IYBL 2CKCA 4BBSL 1BQ9A 3H9BA 4C3JL 2XJQA 1NNQA 2Z3RB 4Y7NL 3KYUA 1DVBA 3S1RL 1ODHA 1TWGL 3PZAA 2ERSA 1ZRPA 2XJTA 4B8CD 1RB9A 4JADA 2A68D 4A3KL 3GTKL 2XJSA 2HVYC 3PKJA 1T9QA 4JAEA 4A3LL 1YK4A 4AHXA 2NYDA 1P7PA 2PVXA 4BXXL 3GTLL 1WCML 3RYGA 3S2DL 2R7ZL 5MFPA 5IP9L 2Z3QB 2JA7L 3S17L 3M4OL 3HOWL 4YWMA 5C3EL 2PVEA 4AR3A 3GTJL 3H97A 3ZG6A 1IU5A 1I6HL 3HOUL 5IY0A 3SS2A 1H7VA 4K9FA 3PO3L 3RZOL 4JAFA 1BE7A 1YUZA 3S2HL 3MQKB 2E2JL 2O5JD 3A44A 3H3VM 1OWCA 3PWFA 3P2AA 1QQTA 1WJVA 3CQZL 1CAAA 4A3BL 1SMWA 2BE5D 3MSUA 3JR7A 2VL6A 5AI3A 1RWDA 3IU3I 1VZHA 3KYVA 3I4NL 3GTML 3K35A 1PFUA 1RYQA 3PO2L 1LTLA 3H0GL 5FJ8L 4BBRL 1VZIA 3WWLA 4XXBB 3FKIL 3B08B 5M3FL 3LWOB 3HJYB 3PKIA 5EINC 3FDJA 5M3ML 3KYYA 3HOXL 4X6AL 2GMGA 2NVTL 1BFYA 3MPSA 3PIO1 3RZDL 7RXNA 4A3GL 3P8BA 1Z92B 2YU9L 4ZN3B 4AI3A 2ZIXA 2A6HD 3HAXC 4A3DL 1TWCL 2M4YA 4E6YA 3GTQL 1RYTA 4TVMA 3S1ML 2KKDA 1IW7D 2NVYL 2JI2A 2JI1A 5AN9H 4A3ML 3HOVL 1BQ8A 4POGA 4LHLA 2B63L 2R93L 2AQCA 2V0FA 1R0GA 2JA5L 3HKZP 4WFN1 1Y1VL 3I4ML 3LWRB 5H1Sc 5MFZA 5M5YL 2XJVA 2VUML 2JA8L 3LPEB 1PFWA 5IYDL 4UY81 1K83L 1BRFA 2CKAA 2RDVA 4A3IL 1OWBA 1NXGA 4A3FL 1SMMA 2XJRA 1VZGA 2JA6L 1R9TL 4AR4A 4BY1L 5M5WL 3VPBE 4ZN1B 1RDGA 3LWPB 4TPUA 2EY4E 3KYWA 4AHZA 2QL0A 1S24A 3LWQB 2AYJA 1B2OA 5DM61 1TWAL 2PYAA 3HOZL 3K7AL 1YV1A 3B0AB 2NVXL 3S15L 1IROA 2HR5A 5GAGc 2B5ID 3J7Z1 1S30A 2APOB 1QYBA 1PFYA 3PL5A 4AR6A 5C4JL 5AI2A 3PIP1 3H9CA 5C4XL 2Y0SP 1PZXA 2PPTA 4POFA 2WB1P 3S14L 2E2IL 3KYXA 3LWVB 1TWHL 3QQCE 2A69D 3GTPL 5MLC3 2ERJA 4C3HL
chains in the Genus database with same CATH topology
5C44L 4AYBP 3PO3L 2B63L 3RZOL 3GTOL 4Y52L 2R93L 2JA5L 3HKZP 1Y1VL 3I4ML 3S2HL 2E2JL 2R92L 5M5YL 2VUML 3H3VM 1SFOL 5FLML 3GTGL 2JA8L 3S1NL 5IYDL 1I50L 5M5XL 1TWFL 3HOYL 1K83L 2E2HL 3S1QL 3S16L 3CQZL 4A3IL 2NVQL 4A3BL 4A3FL 5IYBL 3M3YL 3I4NL 4BBSL 4C3JL 3GTML 2JA6L 1R9TL 4A93L 4BY1L 5M5WL 4Y7NL 3PO2L 5FJ8L 3H0GL 4BBRL 3S1RL 1TWGL 5IYCL 3FKIL 5M3FL 4A3KL 3GTKL 4QIWP 1TWAL 3HOZL 3K7AL 5IP7L 4A3LL 5M3ML 3HOXL 2NVXL 3S15L 4X6AL 2WAQP 2NVTL 4BXXL 3RZDL 3GTLL 1WCML 3S2DL 5C4JL 2R7ZL 4A3GL 5C4XL 2Y0SP 5IP9L 4A3CL 4A3JL 2JA7L 1Y1WL 2YU9L 3S17L 2WB1P 3M4OL 3S14L 4BY7L 3HOWL 2E2IL 4A3EL 4A3DL 5C3EL 1TWCL 3GTQL 3GTJL 3S1ML 4C2M1 1I3QL 2NVYL 1TWHL 1I6HL 3HOUL 2PMZP 4A3ML 3HOVL 4C3IL 3GTPL 4C3HL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C44 L;  4AYB P;  3PO3 L;  2B63 L;  3RZO L;  3GTO L;  4Y52 L;  2R93 L;  2JA5 L;  3HKZ P;  1Y1V L;  3I4M L;  3S2H L;  2E2J L;  2R92 L;  5M5Y L;  2VUM L;  3H3V M;  1SFO L;  5FLM L;  3GTG L;  2JA8 L;  3S1N L;  5IYD L;  1I50 L;  5M5X L;  1TWF L;  3HOY L;  1K83 L;  2E2H L;  3S1Q L;  3S16 L;  3CQZ L;  4A3I L;  2NVQ L;  4A3B L;  4A3F L;  5IYB L;  3M3Y L;  3I4N L;  4BBS L;  4C3J L;  3GTM L;  2JA6 L;  1R9T L;  4A93 L;  4BY1 L;  5M5W L;  4Y7N L;  3PO2 L;  5FJ8 L;  3H0G L;  4BBR L;  3S1R L;  1TWG L;  5IYC L;  3FKI L;  5M3F L;  4A3K L;  3GTK L;  4QIW P;  1TWA L;  3HOZ L;  3K7A L;  5IP7 L;  4A3L L;  5M3M L;  3HOX L;  2NVX L;  3S15 L;  4X6A L;  2WAQ P;  2NVT L;  4BXX L;  3RZD L;  3GTL L;  1WCM L;  3S2D L;  5C4J L;  2R7Z L;  4A3G L;  5C4X L;  2Y0S P;  5IP9 L;  4A3C L;  4A3J L;  2JA7 L;  1Y1W L;  2YU9 L;  3S17 L;  2WB1 P;  3M4O L;  3S14 L;  4BY7 L;  3HOW L;  2E2I L;  4A3E L;  4A3D L;  5C3E L;  1TWC L;  3GTQ L;  3GTJ L;  3S1M L;  4C2M 1;  1I3Q L;  2NVY L;  1TWH L;  1I6H L;  3HOU L;  2PMZ P;  4A3M L;  3HOV L;  4C3I L;  3GTP L;  4C3H L; 
#chains in the Genus database with same CATH topology
 1B2J A;  4AYB P;  1CAD A;  1S2Z A;  1JYB A;  5GAH c;  4XGH A;  3LNL A;  2R92 L;  1IU6 A;  5GAE c;  2A6E D;  4AI1 A;  1IRN A;  1SFO L;  3GTG L;  1I50 L;  2JI3 A;  1TWF L;  1R0H A;  2E2H L;  3S1Q L;  4G6B A;  2XJU A;  2NVQ L;  1LKP A;  3M3Y L;  4U67 1;  4A93 L;  5RXN A;  2J9U B;  2V3B B;  1DX8 A;  4AHY A;  1YUX A;  2XJP A;  5DM7 1;  6RXN A;  5IYC L;  3RZ6 A;  1B13 A;  4GS7 D;  4QIW P;  4AI0 A;  4YWL A;  2C6B A;  4AI2 A;  5IP7 L;  4ME3 A;  2M6P A;  4JAG A;  4LHN A;  1LKO A;  2WAQ P;  2PSM C;  1VCX A;  1F4L A;  3RZT A;  3J7Y 1;  2LCQ A;  5GAD c;  1NXE A;  2MS3 A;  4A3C L;  4A3J L;  1Y1W L;  1LKM A;  1FHM A;  2M4V A;  5K2M E;  2L0Z A;  2K2D A;  5MF6 A;  4RXN A;  5JVH 1;  4BY7 L;  2V0E A;  5EIO C;  1QCV A;  4A3E L;  3HJW B;  1YK5 A;  8RXN A;  4C2M 1;  2KN9 A;  1I3Q L;  2PMZ P;  4C3I L;  1T9O A;  1R0I A;  2RFK B;  2M6O A;  3NFP I;  1RDV A;  1E8J A;  4AHW A;  2C6A A;  5C44 L;  2AUS B;  3H99 A;  3GTO L;  4V19 6;  4Y52 L;  1T9P A;  2CR8 A;  2DSX A;  1PFV A;  2H12 A;  1C09 A;  4AR5 A;  5FLM L;  3S1N L;  1FHH A;  1B71 A;  5M5X L;  3HOY L;  5JVG 1;  1SMU A;  3QVD A;  3S16 L;  1R0J A;  1R0F A;  3WWN B;  5MGN A;  5IYB L;  2CKC A;  4BBS L;  1BQ9 A;  3H9B A;  4C3J L;  2XJQ A;  1NNQ A;  2Z3R B;  4Y7N L;  3KYU A;  1DVB A;  3S1R L;  1ODH A;  1TWG L;  3PZA A;  2ERS A;  1ZRP A;  2XJT A;  4B8C D;  1RB9 A;  4JAD A;  2A68 D;  4A3K L;  3GTK L;  2XJS A;  2HVY C;  3PKJ A;  1T9Q A;  4JAE A;  4A3L L;  1YK4 A;  4AHX A;  2NYD A;  1P7P A;  2PVX A;  4BXX L;  3GTL L;  1WCM L;  3RYG A;  3S2D L;  2R7Z L;  5MFP A;  5IP9 L;  2Z3Q B;  2JA7 L;  3S17 L;  3M4O L;  3HOW L;  4YWM A;  5C3E L;  2PVE A;  4AR3 A;  3GTJ L;  3H97 A;  3ZG6 A;  1IU5 A;  1I6H L;  3HOU L;  5IY0 A;  3SS2 A;  1H7V A;  4K9F A;  3PO3 L;  3RZO L;  4JAF A;  1BE7 A;  1YUZ A;  3S2H L;  3MQK B;  2E2J L;  2O5J D;  3A44 A;  3H3V M;  1OWC A;  3PWF A;  3P2A A;  1QQT A;  1WJV A;  3CQZ L;  1CAA A;  4A3B L;  1SMW A;  2BE5 D;  3MSU A;  3JR7 A;  2VL6 A;  5AI3 A;  1RWD A;  3IU3 I;  1VZH A;  3KYV A;  3I4N L;  3GTM L;  3K35 A;  1PFU A;  1RYQ A;  3PO2 L;  1LTL A;  3H0G L;  5FJ8 L;  4BBR L;  1VZI A;  3WWL A;  4XXB B;  3FKI L;  3B08 B;  5M3F L;  3LWO B;  3HJY B;  3PKI A;  5EIN C;  3FDJ A;  5M3M L;  3KYY A;  3HOX L;  4X6A L;  2GMG A;  2NVT L;  1BFY A;  3MPS A;  3PIO 1;  3RZD L;  7RXN A;  4A3G L;  3P8B A;  1Z92 B;  2YU9 L;  4ZN3 B;  4AI3 A;  2ZIX A;  2A6H D;  3HAX C;  4A3D L;  1TWC L;  2M4Y A;  4E6Y A;  3GTQ L;  1RYT A;  4TVM A;  3S1M L;  2KKD A;  1IW7 D;  2NVY L;  2JI2 A;  2JI1 A;  5AN9 H;  4A3M L;  3HOV L;  1BQ8 A;  4POG A;  4LHL A;  2B63 L;  2R93 L;  2AQC A;  2V0F A;  1R0G A;  2JA5 L;  3HKZ P;  4WFN 1;  1Y1V L;  3I4M L;  3LWR B;  5H1S c;  5MFZ A;  5M5Y L;  2XJV A;  2VUM L;  2JA8 L;  3LPE B;  1PFW A;  5IYD L;  4UY8 1;  1K83 L;  1BRF A;  2CKA A;  2RDV A;  4A3I L;  1OWB A;  1NXG A;  4A3F L;  1SMM A;  2XJR A;  1VZG A;  2JA6 L;  1R9T L;  4AR4 A;  4BY1 L;  5M5W L;  3VPB E;  4ZN1 B;  1RDG A;  3LWP B;  4TPU A;  2EY4 E;  3KYW A;  4AHZ A;  2QL0 A;  1S24 A;  3LWQ B;  2AYJ A;  1B2O A;  5DM6 1;  1TWA L;  2PYA A;  3HOZ L;  3K7A L;  1YV1 A;  3B0A B;  2NVX L;  3S15 L;  1IRO A;  2HR5 A;  5GAG c;  2B5I D;  3J7Z 1;  1S30 A;  2APO B;  1QYB A;  1PFY A;  3PL5 A;  4AR6 A;  5C4J L;  5AI2 A;  3PIP 1;  3H9C A;  5C4X L;  2Y0S P;  1PZX A;  2PPT A;  4POF A;  2WB1 P;  3S14 L;  2E2I L;  3KYX A;  3LWV B;  1TWH L;  3QQC E;  2A69 D;  3GTP L;  5MLC 3;  2ERJ A;  4C3H L; 
#chains in the Genus database with same CATH homology
 5C44 L;  4AYB P;  3PO3 L;  2B63 L;  3RZO L;  3GTO L;  4Y52 L;  2R93 L;  2JA5 L;  3HKZ P;  1Y1V L;  3I4M L;  3S2H L;  2E2J L;  2R92 L;  5M5Y L;  2VUM L;  3H3V M;  1SFO L;  5FLM L;  3GTG L;  2JA8 L;  3S1N L;  5IYD L;  1I50 L;  5M5X L;  1TWF L;  3HOY L;  1K83 L;  2E2H L;  3S1Q L;  3S16 L;  3CQZ L;  4A3I L;  2NVQ L;  4A3B L;  4A3F L;  5IYB L;  3M3Y L;  3I4N L;  4BBS L;  4C3J L;  3GTM L;  2JA6 L;  1R9T L;  4A93 L;  4BY1 L;  5M5W L;  4Y7N L;  3PO2 L;  5FJ8 L;  3H0G L;  4BBR L;  3S1R L;  1TWG L;  5IYC L;  3FKI L;  5M3F L;  4A3K L;  3GTK L;  4QIW P;  1TWA L;  3HOZ L;  3K7A L;  5IP7 L;  4A3L L;  5M3M L;  3HOX L;  2NVX L;  3S15 L;  4X6A L;  2WAQ P;  2NVT L;  4BXX L;  3RZD L;  3GTL L;  1WCM L;  3S2D L;  5C4J L;  2R7Z L;  4A3G L;  5C4X L;  2Y0S P;  5IP9 L;  4A3C L;  4A3J L;  2JA7 L;  1Y1W L;  2YU9 L;  3S17 L;  2WB1 P;  3M4O L;  3S14 L;  4BY7 L;  3HOW L;  2E2I L;  4A3E L;  4A3D L;  5C3E L;  1TWC L;  3GTQ L;  3GTJ L;  3S1M L;  4C2M 1;  1I3Q L;  2NVY L;  1TWH L;  1I6H L;  3HOU L;  2PMZ P;  4A3M L;  3HOV L;  4C3I L;  3GTP L;  4C3H L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.