7RXNA

Structure of rubredoxin from desulfovibrio vulgaris at 1.5 a resolution
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
52
structure length
52
Chain Sequence
MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-6)S2 (12-13)S3 (49-51)TIV2 (7-10)EMPTY3H4 (46-48)TIV1 (6-9)TII1 (25-28)3H1 (15-17)TI1 (34-37)TI2 (39-42)TIV3 (40-43)3H2 (20-22)3H3 (30-32)Updating...
connected with : NaN
molecule tags Electron transfer(iron-sulfur protein)
source organism Desulfovibrio vulgaris
publication title Structure of rubredoxin from Desulfovibrio vulgaris at 1.5 A resolution.
pubmed doi rcsb
molecule keywords RUBREDOXIN
total genus 8
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 1990-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 7rxnA00
2V3BB 1T9QA 1YV1A 4K9FA 1IRNA 1RWDA 2PVXA 5RXNA 1QYBA 5AI3A 2M4YA 6RXNA 2GMGA 1BFYA 1B13A 4POFA 1B71A 2RDVA 1LTLA 2DSXA 1R0IA 1B2JA 1T9OA 3A44A 1BQ9A 7RXNA 1R0HA 1LKPA 4YWMA 1BQ8A 1C09A 1DX8A 1R0GA 1H7VA 1NNQA 2QL0A 1RYTA 3KYWA 1R0JA 2PYAA 4POGA 1YK4A 1IU6A 3PZAA 1YK5A 1YUZA 3KYXA 1IROA 1LKMA 1CAAA 1JYBA 5IY0A 5AI2A 1S2ZA 3QVDA 2KN9A 1RDVA 1SMWA 2KKDA 2VL6A 4AR6A 1RB9A 1RDGA 1FHHA 3PWFA 3RYGA 3MPSA 3KYUA 4AR4A 1SMMA 4AR3A 3SS2A 1LKOA 1R0FA 1VCXA 1FHMA 3KYYA 4ME3A 1CADA 4TPUA 1BRFA 1YUXA 1S24A 3RZ6A 2K2DA 2PVEA 1SMUA 1T9PA 1B2OA 4RXNA 1IU5A 2HR5A 1S30A 4YWLA 3KYVA 2LCQA 8RXNA 1E8JA 1BE7A 2MS3A 1DVBA 3RZTA 1ZRPA 4AR5A 1QCVA
chains in the Genus database with same CATH superfamily
3H0GL 4JAFA 1IRNA 2A6ED 5RXNA 5AI3A 5IP7L 1RYQA 1B71A 2A6HD 4A93L 1LTLA 3CQZL 3H97A 3A44A 1BQ9A 1K83L 1LKPA 2JA8L 2BE5D 1I6HL 2L0ZA 1C09A 1ODHA 1H7VA 1RYTA 3KYWA 2PYAA 2ZIXA 3S1ML 2Z3RB 3PZAA 3HOVL 3KYXA 1TWGL 2E2JL 5C44L 1TWFL 5IY0A 5EINC 3PIO1 1I50L 3LNLA 5M5XL 3I4NL 3J7Y1 5AN9H 1FHHA 3I4ML 3S15L 3GTJL 4LHLA 1VCXA 3LWQB 3RZOL 5DM71 4AHWA 3GTQL 4A3KL 1T9PA 5JVH1 1Z92B 1IU5A 1S30A 2M6OA 3VPBE 2PMZP 2VUML 3RZTA 1TWCL 5MLC3 4LHNA 4AR5A 2RFKB 5GADc 4E6YA 1PFWA 2PVXA 5IYCL 2M4YA 2GMGA 1SFOL 3GTOL 1BFYA 2APOB 2DSXA 1R0IA 3LWOB 1B2JA 1QQTA 3S17L 1VZHA 1R0HA 3QQCE 5C4XL 3GTPL 3HJWB 3PO2L 4C2M1 1PFVA 1P7PA 2NVYL 4AI0A 1DX8A 3HOUL 2PPTA 5MF6A 1NNQA 5IYBL 3GTLL 4TVMA 4BBRL 5MFZA 1YK4A 2AYJA 2WB1P 2NVXL 1YUZA 3GTGL 4X6AL 1CAAA 1JYBA 2XJRA 3ZG6A 2NVQL 2CKCA 4BY7L 5M5WL 3HOZL 2XJSA 4B8CD 1RDGA 3S2HL 4A3CL 4G6BA 1SMMA 3SS2A 1R0FA 3LWVB 1FHMA 3B0AB 3WWNB 4XXBB 5K2ME 3J7Z1 3H9CA 1TWAL 4Y7NL 5FLML 1YUXA 2PSMC 2AQCA 3RZ6A 4ZN1B 1VZGA 3JR7A 3LPEB 4ZN3B 4A3BL 4A3FL 4YWLA 1Y1VL 2ERJA 1IW7D 4A3GL 4V196 4U671 4AHZA 2MS3A 1DVBA 3K7AL 1ZRPA 3HOXL 2YU9L 1QCVA 4JAGA 5H1Sc 2ERSA 1F4LA 2V3BB 3PO3L 1T9QA 4A3EL 4K9FA 5JVG1 3GTKL 2M6PA 2RDVA 3GTML 4BY1L 1T9OA 4GS7D 5MFPA 2O5JD 7RXNA 1BQ8A 2Z3QB 2A69D 2JI1A 2EY4E 3MSUA 1R0GA 4AI2A 2XJUA 1R0JA 3HOWL 3NFPI 1IU6A 2NYDA 3PKIA 5GAHc 3PKJA 2JA5L 2XJVA 3S2DL 5AI2A 5EIOC 1PFYA 1RDVA 2XJQA 1SMWA 1NXGA 4C3JL 2XJTA 4Y52L 2NVTL 3PWFA 3MPSA 2CKAA 4AR4A 1LKOA 2HVYC 3LWPB 2AUSB 5M3ML 5GAGc 1CADA 4TPUA 3HKZP 1BRFA 1S24A 1NXEA 3RZDL 3S1NL 1SMUA 1R9TL 3H99A 1B2OA 4RXNA 1WJVA 5MGNA 8RXNA 3H9BA 1PZXA 3LWRB 3S1RL 4QIWP 4UY81 1WCML 2V0EA 4AHXA 3K35A 1YV1A 4AI1A 1RWDA 2R92L 1QYBA 6RXNA 1TWHL 1B13A 4POFA 5C4JL 4BBSL 4A3ML 2H12A 4XGHA 3PIP1 3S1QL 4A3DL 4YWMA 4BXXL 2R7ZL 2B5ID 1PFUA 3P8BA 5M5YL 4A3LL 1I3QL 2JA6L 1Y1WL 3S16L 3WWLA 2QL0A 3M3YL 1OWCA 4POGA 4AYBP 4C3IL 1YK5A 1IROA 2C6AA 3HAXC 1LKMA 4AHYA 2A68D 2XJPA 4A3JL 2R93L 3MQKB 1S2ZA 4JAEA 3M4OL 2V0FA 2KN9A 3QVDA 2JI3A 2E2IL 3HJYB 2KKDA 2M4VA 2JA7L 5IYDL 2VL6A 2B63L 4AR6A 3FDJA 2WAQP 1RB9A 5M3FL 3HOYL 2C6BA 3RYGA 2Y0SP 3KYUA 5IP9L 4AR3A 2JI2A 5GAEc 3KYYA 4ME3A 2CR8A 3H3VM 4A3IL 3PL5A 2K2DA 2PVEA 5C3EL 3FKIL 4AI3A 1OWBA 2HR5A 4C3HL 5DM61 3KYVA 2LCQA 4WFN1 1E8JA 1BE7A 1VZIA 3P2AA 3S14L 3IU3I 4JADA 3B08B 2E2HL 5FJ8L 2J9UB
chains in the Genus database with same CATH topology
2ERSA 2V3BB 5GADc 1T9QA 4E6YA 2V0EA 4AHXA 4JAFA 3K35A 1YV1A 4K9FA 4AI1A 1IRNA 2A6ED 1RWDA 2PVXA 5RXNA 5JVG1 1QYBA 5AI3A 2M4YA 6RXNA 2GMGA 1BFYA 1B13A 2M6PA 1RYQA 4POFA 1B71A 2A6HD 2RDVA 1LTLA 2DSXA 1R0IA 1B2JA 1T9OA 2H12A 3A44A 1BQ9A 4GS7D 4XGHA 5MFPA 3PIP1 2O5JD 7RXNA 1R0HA 1LKPA 3QQCE 4YWMA 1BQ8A 2Z3QB 2A69D 2BE5D 2B5ID 2JI1A 1C09A 2L0ZA 3P8BA 4AI0A 3MSUA 1ODHA 1DX8A 1R0GA 4AI2A 2PPTA 5MF6A 3WWLA 1H7VA 1NNQA 2QL0A 1OWCA 1RYTA 3KYWA 4TVMA 2XJUA 1R0JA 2PYAA 4POGA 5MFZA 1YK4A 3NFPI 2ZIXA 2Z3RB 1IU6A 2AYJA 2NYDA 3PKIA 1YK5A 3PZAA 1YUZA 3PKJA 3KYXA 5GAHc 2XJVA 1IROA 2C6AA 1LKMA 1CAAA 1JYBA 2XJRA 4AHYA 5IY0A 2A68D 2XJPA 5AI2A 3ZG6A 5EIOC 1S2ZA 4JAEA 5EINC 2V0FA 2KN9A 3QVDA 3PIO1 2CKCA 1RDVA 3LNLA 2XJQA 1SMWA 2JI3A 1NXGA 2KKDA 2M4VA 2VL6A 2XJSA 2XJTA 4AR6A 4B8CD 3J7Y1 1RB9A 5AN9H 1RDGA 2C6BA 1FHHA 3PWFA 3RYGA 3MPSA 3KYUA 4G6BA 2CKAA 4AR4A 5H1Sc 1SMMA 4AR3A 3SS2A 4LHLA 1LKOA 1R0FA 1VCXA 1FHMA 2JI2A 3B0AB 5GAEc 3KYYA 4ME3A 5GAGc 3WWNB 2CR8A 4XXBB 1CADA 5K2ME 4TPUA 3J7Z1 1BRFA 1YUXA 2PSMC 1S24A 3RZ6A 1NXEA 4ZN1B 1VZGA 2K2DA 2PVEA 5DM71 3LPEB 1SMUA 4AHWA 4ZN3B 1T9PA 4AI3A 1B2OA 1OWBA 4RXNA 1Z92B 5JVH1 1IU5A 1WJVA 1S30A 2HR5A 4YWLA 2M6OA 3VPBE 5MGNA 5DM61 2ERJA 3KYVA 2LCQA 8RXNA 1IW7D 4WFN1 4V196 4U671 1E8JA 1BE7A 4AHZA 2MS3A 1VZIA 1DVBA 3P2AA 3RZTA 5MLC3 1ZRPA 4LHNA 4AR5A 3IU3I 4JADA 3B08B 1VZHA 1QCVA 4JAGA 2J9UB 4UY81
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3B B;  1T9Q A;  1YV1 A;  4K9F A;  1IRN A;  1RWD A;  2PVX A;  5RXN A;  1QYB A;  5AI3 A;  2M4Y A;  6RXN A;  2GMG A;  1BFY A;  1B13 A;  4POF A;  1B71 A;  2RDV A;  1LTL A;  2DSX A;  1R0I A;  1B2J A;  1T9O A;  3A44 A;  1BQ9 A;  7RXN A;  1R0H A;  1LKP A;  4YWM A;  1BQ8 A;  1C09 A;  1DX8 A;  1R0G A;  1H7V A;  1NNQ A;  2QL0 A;  1RYT A;  3KYW A;  1R0J A;  2PYA A;  4POG A;  1YK4 A;  1IU6 A;  3PZA A;  1YK5 A;  1YUZ A;  3KYX A;  1IRO A;  1LKM A;  1CAA A;  1JYB A;  5IY0 A;  5AI2 A;  1S2Z A;  3QVD A;  2KN9 A;  1RDV A;  1SMW A;  2KKD A;  2VL6 A;  4AR6 A;  1RB9 A;  1RDG A;  1FHH A;  3PWF A;  3RYG A;  3MPS A;  3KYU A;  4AR4 A;  1SMM A;  4AR3 A;  3SS2 A;  1LKO A;  1R0F A;  1VCX A;  1FHM A;  3KYY A;  4ME3 A;  1CAD A;  4TPU A;  1BRF A;  1YUX A;  1S24 A;  3RZ6 A;  2K2D A;  2PVE A;  1SMU A;  1T9P A;  1B2O A;  4RXN A;  1IU5 A;  2HR5 A;  1S30 A;  4YWL A;  3KYV A;  2LCQ A;  8RXN A;  1E8J A;  1BE7 A;  2MS3 A;  1DVB A;  3RZT A;  1ZRP A;  4AR5 A;  1QCV A; 
#chains in the Genus database with same CATH topology
 3H0G L;  4JAF A;  1IRN A;  2A6E D;  5RXN A;  5AI3 A;  5IP7 L;  1RYQ A;  1B71 A;  2A6H D;  4A93 L;  1LTL A;  3CQZ L;  3H97 A;  3A44 A;  1BQ9 A;  1K83 L;  1LKP A;  2JA8 L;  2BE5 D;  1I6H L;  2L0Z A;  1C09 A;  1ODH A;  1H7V A;  1RYT A;  3KYW A;  2PYA A;  2ZIX A;  3S1M L;  2Z3R B;  3PZA A;  3HOV L;  3KYX A;  1TWG L;  2E2J L;  5C44 L;  1TWF L;  5IY0 A;  5EIN C;  3PIO 1;  1I50 L;  3LNL A;  5M5X L;  3I4N L;  3J7Y 1;  5AN9 H;  1FHH A;  3I4M L;  3S15 L;  3GTJ L;  4LHL A;  1VCX A;  3LWQ B;  3RZO L;  5DM7 1;  4AHW A;  3GTQ L;  4A3K L;  1T9P A;  5JVH 1;  1Z92 B;  1IU5 A;  1S30 A;  2M6O A;  3VPB E;  2PMZ P;  2VUM L;  3RZT A;  1TWC L;  5MLC 3;  4LHN A;  4AR5 A;  2RFK B;  5GAD c;  4E6Y A;  1PFW A;  2PVX A;  5IYC L;  2M4Y A;  2GMG A;  1SFO L;  3GTO L;  1BFY A;  2APO B;  2DSX A;  1R0I A;  3LWO B;  1B2J A;  1QQT A;  3S17 L;  1VZH A;  1R0H A;  3QQC E;  5C4X L;  3GTP L;  3HJW B;  3PO2 L;  4C2M 1;  1PFV A;  1P7P A;  2NVY L;  4AI0 A;  1DX8 A;  3HOU L;  2PPT A;  5MF6 A;  1NNQ A;  5IYB L;  3GTL L;  4TVM A;  4BBR L;  5MFZ A;  1YK4 A;  2AYJ A;  2WB1 P;  2NVX L;  1YUZ A;  3GTG L;  4X6A L;  1CAA A;  1JYB A;  2XJR A;  3ZG6 A;  2NVQ L;  2CKC A;  4BY7 L;  5M5W L;  3HOZ L;  2XJS A;  4B8C D;  1RDG A;  3S2H L;  4A3C L;  4G6B A;  1SMM A;  3SS2 A;  1R0F A;  3LWV B;  1FHM A;  3B0A B;  3WWN B;  4XXB B;  5K2M E;  3J7Z 1;  3H9C A;  1TWA L;  4Y7N L;  5FLM L;  1YUX A;  2PSM C;  2AQC A;  3RZ6 A;  4ZN1 B;  1VZG A;  3JR7 A;  3LPE B;  4ZN3 B;  4A3B L;  4A3F L;  4YWL A;  1Y1V L;  2ERJ A;  1IW7 D;  4A3G L;  4V19 6;  4U67 1;  4AHZ A;  2MS3 A;  1DVB A;  3K7A L;  1ZRP A;  3HOX L;  2YU9 L;  1QCV A;  4JAG A;  5H1S c;  2ERS A;  1F4L A;  2V3B B;  3PO3 L;  1T9Q A;  4A3E L;  4K9F A;  5JVG 1;  3GTK L;  2M6P A;  2RDV A;  3GTM L;  4BY1 L;  1T9O A;  4GS7 D;  5MFP A;  2O5J D;  7RXN A;  1BQ8 A;  2Z3Q B;  2A69 D;  2JI1 A;  2EY4 E;  3MSU A;  1R0G A;  4AI2 A;  2XJU A;  1R0J A;  3HOW L;  3NFP I;  1IU6 A;  2NYD A;  3PKI A;  5GAH c;  3PKJ A;  2JA5 L;  2XJV A;  3S2D L;  5AI2 A;  5EIO C;  1PFY A;  1RDV A;  2XJQ A;  1SMW A;  1NXG A;  4C3J L;  2XJT A;  4Y52 L;  2NVT L;  3PWF A;  3MPS A;  2CKA A;  4AR4 A;  1LKO A;  2HVY C;  3LWP B;  2AUS B;  5M3M L;  5GAG c;  1CAD A;  4TPU A;  3HKZ P;  1BRF A;  1S24 A;  1NXE A;  3RZD L;  3S1N L;  1SMU A;  1R9T L;  3H99 A;  1B2O A;  4RXN A;  1WJV A;  5MGN A;  8RXN A;  3H9B A;  1PZX A;  3LWR B;  3S1R L;  4QIW P;  4UY8 1;  1WCM L;  2V0E A;  4AHX A;  3K35 A;  1YV1 A;  4AI1 A;  1RWD A;  2R92 L;  1QYB A;  6RXN A;  1TWH L;  1B13 A;  4POF A;  5C4J L;  4BBS L;  4A3M L;  2H12 A;  4XGH A;  3PIP 1;  3S1Q L;  4A3D L;  4YWM A;  4BXX L;  2R7Z L;  2B5I D;  1PFU A;  3P8B A;  5M5Y L;  4A3L L;  1I3Q L;  2JA6 L;  1Y1W L;  3S16 L;  3WWL A;  2QL0 A;  3M3Y L;  1OWC A;  4POG A;  4AYB P;  4C3I L;  1YK5 A;  1IRO A;  2C6A A;  3HAX C;  1LKM A;  4AHY A;  2A68 D;  2XJP A;  4A3J L;  2R93 L;  3MQK B;  1S2Z A;  4JAE A;  3M4O L;  2V0F A;  2KN9 A;  3QVD A;  2JI3 A;  2E2I L;  3HJY B;  2KKD A;  2M4V A;  2JA7 L;  5IYD L;  2VL6 A;  2B63 L;  4AR6 A;  3FDJ A;  2WAQ P;  1RB9 A;  5M3F L;  3HOY L;  2C6B A;  3RYG A;  2Y0S P;  3KYU A;  5IP9 L;  4AR3 A;  2JI2 A;  5GAE c;  3KYY A;  4ME3 A;  2CR8 A;  3H3V M;  4A3I L;  3PL5 A;  2K2D A;  2PVE A;  5C3E L;  3FKI L;  4AI3 A;  1OWB A;  2HR5 A;  4C3H L;  5DM6 1;  3KYV A;  2LCQ A;  4WFN 1;  1E8J A;  1BE7 A;  1VZI A;  3P2A A;  3S14 L;  3IU3 I;  4JAD A;  3B08 B;  2E2H L;  5FJ8 L;  2J9U B; 
#chains in the Genus database with same CATH homology
 2ERS A;  2V3B B;  5GAD c;  1T9Q A;  4E6Y A;  2V0E A;  4AHX A;  4JAF A;  3K35 A;  1YV1 A;  4K9F A;  4AI1 A;  1IRN A;  2A6E D;  1RWD A;  2PVX A;  5RXN A;  5JVG 1;  1QYB A;  5AI3 A;  2M4Y A;  6RXN A;  2GMG A;  1BFY A;  1B13 A;  2M6P A;  1RYQ A;  4POF A;  1B71 A;  2A6H D;  2RDV A;  1LTL A;  2DSX A;  1R0I A;  1B2J A;  1T9O A;  2H12 A;  3A44 A;  1BQ9 A;  4GS7 D;  4XGH A;  5MFP A;  3PIP 1;  2O5J D;  7RXN A;  1R0H A;  1LKP A;  3QQC E;  4YWM A;  1BQ8 A;  2Z3Q B;  2A69 D;  2BE5 D;  2B5I D;  2JI1 A;  1C09 A;  2L0Z A;  3P8B A;  4AI0 A;  3MSU A;  1ODH A;  1DX8 A;  1R0G A;  4AI2 A;  2PPT A;  5MF6 A;  3WWL A;  1H7V A;  1NNQ A;  2QL0 A;  1OWC A;  1RYT A;  3KYW A;  4TVM A;  2XJU A;  1R0J A;  2PYA A;  4POG A;  5MFZ A;  1YK4 A;  3NFP I;  2ZIX A;  2Z3R B;  1IU6 A;  2AYJ A;  2NYD A;  3PKI A;  1YK5 A;  3PZA A;  1YUZ A;  3PKJ A;  3KYX A;  5GAH c;  2XJV A;  1IRO A;  2C6A A;  1LKM A;  1CAA A;  1JYB A;  2XJR A;  4AHY A;  5IY0 A;  2A68 D;  2XJP A;  5AI2 A;  3ZG6 A;  5EIO C;  1S2Z A;  4JAE A;  5EIN C;  2V0F A;  2KN9 A;  3QVD A;  3PIO 1;  2CKC A;  1RDV A;  3LNL A;  2XJQ A;  1SMW A;  2JI3 A;  1NXG A;  2KKD A;  2M4V A;  2VL6 A;  2XJS A;  2XJT A;  4AR6 A;  4B8C D;  3J7Y 1;  1RB9 A;  5AN9 H;  1RDG A;  2C6B A;  1FHH A;  3PWF A;  3RYG A;  3MPS A;  3KYU A;  4G6B A;  2CKA A;  4AR4 A;  5H1S c;  1SMM A;  4AR3 A;  3SS2 A;  4LHL A;  1LKO A;  1R0F A;  1VCX A;  1FHM A;  2JI2 A;  3B0A B;  5GAE c;  3KYY A;  4ME3 A;  5GAG c;  3WWN B;  2CR8 A;  4XXB B;  1CAD A;  5K2M E;  4TPU A;  3J7Z 1;  1BRF A;  1YUX A;  2PSM C;  1S24 A;  3RZ6 A;  1NXE A;  4ZN1 B;  1VZG A;  2K2D A;  2PVE A;  5DM7 1;  3LPE B;  1SMU A;  4AHW A;  4ZN3 B;  1T9P A;  4AI3 A;  1B2O A;  1OWB A;  4RXN A;  1Z92 B;  5JVH 1;  1IU5 A;  1WJV A;  1S30 A;  2HR5 A;  4YWL A;  2M6O A;  3VPB E;  5MGN A;  5DM6 1;  2ERJ A;  3KYV A;  2LCQ A;  8RXN A;  1IW7 D;  4WFN 1;  4V19 6;  4U67 1;  1E8J A;  1BE7 A;  4AHZ A;  2MS3 A;  1VZI A;  1DVB A;  3P2A A;  3RZT A;  5MLC 3;  1ZRP A;  4LHN A;  4AR5 A;  3IU3 I;  4JAD A;  3B08 B;  1VZH A;  1QCV A;  4JAG A;  2J9U B;  4UY8 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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