3ZLEA

Crystal structure of toxoplasma gondii sporozoite ama1
Total Genus 98
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
382
structure length
382
Chain Sequence
GQNPWATTTAFADFMKRFNIPQVHGSGIFVDLGRDTEGYREVGGKCPVFGKAIQMHQPAEYSNNFLDDAPTSNDASKKPLPGGFNNPQVYTSGQKFSPIDDSLLQERLGTAGPKTAIGRCALYAYSTIAVNPSTNYTSTYKYPFVYDAVSRKCYVLSVSAQLLKGEKYCSVNGTPSGLTWACFEPVKEKSSARALVYGSAFVAEGNPDAWQSACPNDAVKDALFGKWEDGQCVPFDTKTSVQSDQATNKEECWKRVFANPLVASDAPTTYPEAAQKNWNDFWPVHEQSSPKSGGFGANWANFYLEKESGETICAIFDQVPDCFAPITGAVAYTALGSSTEVNLPQCDSASFIPIEGPCNNCVQVVTECVGNQFDQTSKACCT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Toxoplasma Gondii Sporozoites Invade Host Cells Using Two Novel Paralogs of Ron2 and Ama1
pubmed doi rcsb
molecule tags Membrane protein
source organism Toxoplasma gondii
molecule keywords APICAL MEMBRANE ANTIGEN 1
total genus 98
structure length 382
sequence length 382
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2013-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02430 AMA-1 Apical membrane antigen 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.70 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 3zleA03
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 3zleA01
2X2ZA 1HKYA 4YIZA 2LL3A 4DURA 1NK1A 5CP9A 5EODA 2Y8TA 2Q8AA 1BHTA 2LL4M 1I8NA 5CS5A 1W81A 4Z0EA 2Y8RA 3SP8A 5COEA 4Z0FA 5CS3A 1GMNA 2Y8SA 5CSQA 3HMRA 1W8KA 2J8JA 3SRIA 2QJ4A 1GP9A 4Z09A 4UV6A 5CT1A 2K13X 1YXEA 3ZLEA 3ZWZA 4R1AA 2Z8VA 3HMTA 5I25A 2QJ2A 4A5TS 4R1CA 4R1BA 5CT3A 4APLA 2J8LA 2F83A 2YIOA 2YIPA 3HMSA 3ZLDA 4R19A 4UAOA 5CS9A 4APMA 2YILA 3HN4A 5CT2A 1Z40A 2HGFA 3MKPA 4Z0DA 5EOKA 2Z8WA 4IUAA 2Q8BA 5CS1A 1GMOA 3SRJA
chains in the Genus database with same CATH superfamily
2V8EA 3T5OA 4YIZA 1MD7A 1OK1A 4DURA 5CP9A 1OJYA 3OXUD 4WJG2 5EODA 2JGXA 2EC3A 1TPMA 1H04P 3R62A 1QUBA 4AYMA 4Z0EA 2Y8RA 1H03P 2RKYA 5HYPA 3FGTA 2Y8SA 3M7PA 1W8KA 3SRIA 2CG6A 4IGDA 1NWVA 4Z09A 2EHFA 4B2RA 4R1AA 3ZWZA 1RLHA 2O39C 4DJZA 3ZD1A 4A5TS 5CT3A 4B2SA 4YIVA 2J8LA 4APMA 2YIPA 5CS9A 2KL5A 3ZLDA 3FGRA 5HYTB 2LOJA 1GKGA 1OK3A 5JPMG 2W80A 1TPGA 2Q8BA 1CKLA 1PPQA 2RL0A 1MD8A 2I2LA 3O8EB 4ZH1D 5HYUB 2XWJI 4AYEA 2LL3A 4PZ5A 4JHSA 4F4OC 2Q8AA 4YNXA 2MCZA 2ZYCA 1OK2A 2IZ3A 1GKNA 2QY0A 3IU3I 3CI0J 4AYDA 1E88A 3ZD2A 2G7IA 3MQLA 3SW0X 2RLQA 2XRDA 4A5WB 3KXVA 2J8JA 4N7EA 1E8BA 3OP8A 2KMSA 3HMTA 2QJ2A 4R1CA 1GPZA 2JGWA 4APLA 2F83A 1FBRA 4R19A 1H2PP 1ZJKA 4FXGG 1Z40A 3K3TA 3L89M 5I0QB 4Z0DA 5DN5A 5HZPB 1G4GA 3WSXA 1C1ZA 1Z92B 1H2QP 1QO6A 3SRJA 1SS2A 1HKYA 2B5ID 2KRIA 4AYIA 1VVDA 4MUCA 1BHTA 1SRZA 1OK9A 3NFPI 1I8NA 2CKUA 2RLPA 2XQWC 1W81A 3SP8A 2RKZA 3GXEA 3VWOA 4LOTA 3INBC 3HMRA 3OEDC 1GP9A 4K12A 5CT1A 2CG7A 2K13X 3ZLEA 2Z8VA 3KZJA 4C16A 3ERBA 5I25A 1HFIA 1HFHA 3HMSA 1OJVA 2ERJA 4UAOA 3WSYA 3HN4A 1QGBA 3NJAA 3IX0A 2UWNA 3EJHA 4ONTD 4IUAA 3RJ3D 5CS1A 4J38B 1E5GA 5FO8C 2X2ZA 1HCCA 1O9AA 2XWBF 2YRAA 2YBYA 2WIIC 1NK1A 2Y8TA 2LL4M 4CSYA 5CS5A 2IZ4A 1U5MA 3TVJA 5COEA 4Z0FA 1UOTP 5CS3A 1VVCA 1GMNA 3F6KA 5CSQA 2BZMA 2A55A 1TPNA 2QJ4A 1Q3XA 2MCYA 2JRAA 4KKDA 4UV6A 4LOSA 1YXEA 4MSLA 3CALA 3GOVA 4BWCA 4R1BA 2YIOA 1G4FA 2YILA 5CT2A 4PO7A 2HGFA 3ZRZA 3MKPA 1GHQB 2W81A 1OJWA 1ELVA 5DN4A 2XRBA 2Z8WA 5EOKA 1GMOA 1LY2A
chains in the Genus database with same CATH topology
4YIZA 4DURA 5CP9A 5EODA 4Z0EA 2Y8RA 3FGTA 2Y8SA 1W8KA 3SRIA 4Z09A 3ZWZA 4R1AA 4A5TS 5CT3A 4YIVA 2J8LA 4APMA 5CS9A 2YIPA 2KL5A 3ZLDA 3FGRA 2Q8BA 2I2LA 2LL3A 2Q8AA 2J8JA 4N7EA 3HMTA 2QJ2A 4R1CA 4APLA 2F83A 4R19A 1Z40A 4Z0DA 3WSXA 3SRJA 1HKYA 1BHTA 1I8NA 1W81A 3SP8A 3HMRA 1GP9A 5CT1A 2K13X 3ZLEA 2Z8VA 5I25A 3HMSA 4UAOA 3WSYA 3HN4A 3NJAA 4IUAA 5CS1A 2X2ZA 1NK1A 2Y8TA 2LL4M 5CS5A 5COEA 4Z0FA 5CS3A 1GMNA 3F6KA 5CSQA 2QJ4A 4UV6A 1YXEA 4MSLA 4BWCA 4R1BA 2YIOA 2YILA 5CT2A 4PO7A 2HGFA 3MKPA 5EOKA 2Z8WA 1GMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X2Z A;  1HKY A;  4YIZ A;  2LL3 A;  4DUR A;  1NK1 A;  5CP9 A;  5EOD A;  2Y8T A;  2Q8A A;  1BHT A;  2LL4 M;  1I8N A;  5CS5 A;  1W81 A;  4Z0E A;  2Y8R A;  3SP8 A;  5COE A;  4Z0F A;  5CS3 A;  1GMN A;  2Y8S A;  5CSQ A;  3HMR A;  1W8K A;  2J8J A;  3SRI A;  2QJ4 A;  1GP9 A;  4Z09 A;  4UV6 A;  5CT1 A;  2K13 X;  1YXE A;  3ZLE A;  3ZWZ A;  4R1A A;  2Z8V A;  3HMT A;  5I25 A;  2QJ2 A;  4A5T S;  4R1C A;  4R1B A;  5CT3 A;  4APL A;  2J8L A;  2F83 A;  2YIO A;  2YIP A;  3HMS A;  3ZLD A;  4R19 A;  4UAO A;  5CS9 A;  4APM A;  2YIL A;  3HN4 A;  5CT2 A;  1Z40 A;  2HGF A;  3MKP A;  4Z0D A;  5EOK A;  2Z8W A;  4IUA A;  2Q8B A;  5CS1 A;  1GMO A;  3SRJ A; 
#chains in the Genus database with same CATH topology
 2V8E A;  3T5O A;  4YIZ A;  1MD7 A;  1OK1 A;  4DUR A;  5CP9 A;  1OJY A;  3OXU D;  4WJG 2;  5EOD A;  2JGX A;  2EC3 A;  1TPM A;  1H04 P;  3R62 A;  1QUB A;  4AYM A;  4Z0E A;  2Y8R A;  1H03 P;  2RKY A;  5HYP A;  3FGT A;  2Y8S A;  3M7P A;  1W8K A;  3SRI A;  2CG6 A;  4IGD A;  1NWV A;  4Z09 A;  2EHF A;  4B2R A;  4R1A A;  3ZWZ A;  1RLH A;  2O39 C;  4DJZ A;  3ZD1 A;  4A5T S;  5CT3 A;  4B2S A;  4YIV A;  2J8L A;  4APM A;  2YIP A;  5CS9 A;  2KL5 A;  3ZLD A;  3FGR A;  5HYT B;  2LOJ A;  1GKG A;  1OK3 A;  5JPM G;  2W80 A;  1TPG A;  2Q8B A;  1CKL A;  1PPQ A;  2RL0 A;  1MD8 A;  2I2L A;  3O8E B;  4ZH1 D;  5HYU B;  2XWJ I;  4AYE A;  2LL3 A;  4PZ5 A;  4JHS A;  4F4O C;  2Q8A A;  4YNX A;  2MCZ A;  2ZYC A;  1OK2 A;  2IZ3 A;  1GKN A;  2QY0 A;  3IU3 I;  3CI0 J;  4AYD A;  1E88 A;  3ZD2 A;  2G7I A;  3MQL A;  3SW0 X;  2RLQ A;  2XRD A;  4A5W B;  3KXV A;  2J8J A;  4N7E A;  1E8B A;  3OP8 A;  2KMS A;  3HMT A;  2QJ2 A;  4R1C A;  1GPZ A;  2JGW A;  4APL A;  2F83 A;  1FBR A;  4R19 A;  1H2P P;  1ZJK A;  4FXG G;  1Z40 A;  3K3T A;  3L89 M;  5I0Q B;  4Z0D A;  5DN5 A;  5HZP B;  1G4G A;  3WSX A;  1C1Z A;  1Z92 B;  1H2Q P;  1QO6 A;  3SRJ A;  1SS2 A;  1HKY A;  2B5I D;  2KRI A;  4AYI A;  1VVD A;  4MUC A;  1BHT A;  1SRZ A;  1OK9 A;  3NFP I;  1I8N A;  2CKU A;  2RLP A;  2XQW C;  1W81 A;  3SP8 A;  2RKZ A;  3GXE A;  3VWO A;  4LOT A;  3INB C;  3HMR A;  3OED C;  1GP9 A;  4K12 A;  5CT1 A;  2CG7 A;  2K13 X;  3ZLE A;  2Z8V A;  3KZJ A;  4C16 A;  3ERB A;  5I25 A;  1HFI A;  1HFH A;  3HMS A;  1OJV A;  2ERJ A;  4UAO A;  3WSY A;  3HN4 A;  1QGB A;  3NJA A;  3IX0 A;  2UWN A;  3EJH A;  4ONT D;  4IUA A;  3RJ3 D;  5CS1 A;  4J38 B;  1E5G A;  5FO8 C;  2X2Z A;  1HCC A;  1O9A A;  2XWB F;  2YRA A;  2YBY A;  2WII C;  1NK1 A;  2Y8T A;  2LL4 M;  4CSY A;  5CS5 A;  2IZ4 A;  1U5M A;  3TVJ A;  5COE A;  4Z0F A;  1UOT P;  5CS3 A;  1VVC A;  1GMN A;  3F6K A;  5CSQ A;  2BZM A;  2A55 A;  1TPN A;  2QJ4 A;  1Q3X A;  2MCY A;  2JRA A;  4KKD A;  4UV6 A;  4LOS A;  1YXE A;  4MSL A;  3CAL A;  3GOV A;  4BWC A;  4R1B A;  2YIO A;  1G4F A;  2YIL A;  5CT2 A;  4PO7 A;  2HGF A;  3ZRZ A;  3MKP A;  1GHQ B;  2W81 A;  1OJW A;  1ELV A;  5DN4 A;  2XRB A;  2Z8W A;  5EOK A;  1GMO A;  1LY2 A; 
#chains in the Genus database with same CATH homology
 4YIZ A;  4DUR A;  5CP9 A;  5EOD A;  4Z0E A;  2Y8R A;  3FGT A;  2Y8S A;  1W8K A;  3SRI A;  4Z09 A;  3ZWZ A;  4R1A A;  4A5T S;  5CT3 A;  4YIV A;  2J8L A;  4APM A;  5CS9 A;  2YIP A;  2KL5 A;  3ZLD A;  3FGR A;  2Q8B A;  2I2L A;  2LL3 A;  2Q8A A;  2J8J A;  4N7E A;  3HMT A;  2QJ2 A;  4R1C A;  4APL A;  2F83 A;  4R19 A;  1Z40 A;  4Z0D A;  3WSX A;  3SRJ A;  1HKY A;  1BHT A;  1I8N A;  1W81 A;  3SP8 A;  3HMR A;  1GP9 A;  5CT1 A;  2K13 X;  3ZLE A;  2Z8V A;  5I25 A;  3HMS A;  4UAO A;  3WSY A;  3HN4 A;  3NJA A;  4IUA A;  5CS1 A;  2X2Z A;  1NK1 A;  2Y8T A;  2LL4 M;  5CS5 A;  5COE A;  4Z0F A;  5CS3 A;  1GMN A;  3F6K A;  5CSQ A;  2QJ4 A;  4UV6 A;  1YXE A;  4MSL A;  4BWC A;  4R1B A;  2YIO A;  2YIL A;  5CT2 A;  4PO7 A;  2HGF A;  3MKP A;  5EOK A;  2Z8W A;  1GMO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...