3ZLEA

Crystal structure of toxoplasma gondii sporozoite ama1
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
382
structure length
382
Chain Sequence
GQNPWATTTAFADFMKRFNIPQVHGSGIFVDLGRDTEGYREVGGKCPVFGKAIQMHQPAEYSNNFLDDAPTSNDASKKPLPGGFNNPQVYTSGQKFSPIDDSLLQERLGTAGPKTAIGRCALYAYSTIAVNPSTNYTSTYKYPFVYDAVSRKCYVLSVSAQLLKGEKYCSVNGTPSGLTWACFEPVKEKSSARALVYGSAFVAEGNPDAWQSACPNDAVKDALFGKWEDGQCVPFDTKTSVQSDQATNKEECWKRVFANPLVASDAPTTYPEAAQKNWNDFWPVHEQSSPKSGGFGANWANFYLEKESGETICAIFDQVPDCFAPITGAVAYTALGSSTEVNLPQCDSASFIPIEGPCNNCVQVVTECVGNQFDQTSKACCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Toxoplasma Gondii Sporozoites Invade Host Cells Using Two Novel Paralogs of Ron2 and Ama1
pubmed doi rcsb
molecule tags Membrane protein
source organism Toxoplasma gondii
molecule keywords APICAL MEMBRANE ANTIGEN 1
total genus 98
structure length 382
sequence length 382
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2013-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02430 AMA-1 Apical membrane antigen 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.70 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 3zleA03
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 3zleA01
2X2ZA 3SRIA 1NK1A 2YIOA 4A5TS 2K13X 2Q8AA 5COEA 5CT3A 5CSQA 5CS5A 2Y8RA 4IUAA 1Z40A 4R1BA 2YILA 5CS1A 4Z0DA 3MKPA 1HKYA 2Q8BA 2Y8TA 3ZLEA 1BHTA 2QJ4A 2LL4M 4APLA 2J8JA 5CT1A 2YIPA 5CS9A 3ZWZA 3HMTA 5CP9A 1GMOA 1YXEA 2F83A 2J8LA 3ZLDA 3HMRA 4Z09A 2Y8SA 4DURA 4Z0FA 1W81A 5EODA 1W8KA 1GP9A 4R19A 5CS3A 1GMNA 4R1CA 4UV6A 2HGFA 3HMSA 4R1AA 3SRJA 5I25A 4UAOA 3SP8A 2Z8VA 1I8NA 2LL3A 4Z0EA 2Z8WA 2QJ2A 5CT2A 3HN4A 4APMA 5EOKA 4YIZA
chains in the Genus database with same CATH superfamily
3SRIA 3TVJA 1QO6A 4LOSA 5CT3A 3IU3I 5CS5A 2EHFA 4A5WB 4CSYA 3SW0X 2MCZA 5DN5A 1PPQA 4IUAA 4R1BA 1H2PP 4YIVA 4PO7A 4BWCA 5DN4A 1CKLA 1MD7A 2B5ID 4APLA 3WSXA 2RLPA 3IX0A 2XRBA 3NFPI 1H03P 2IZ3A 1G4FA 1GMOA 2ZYCA 1MD8A 2F83A 4WJG2 3HMRA 5EODA 3M7PA 2CG7A 4AYDA 1Z92B 4MSLA 4B2RA 4AYEA 5CS3A 4UV6A 2HGFA 1OJYA 3INBC 2LOJA 1E5GA 1TPGA 3ZRZA 1I8NA 3SP8A 2ERJA 2LL3A 5CT2A 2RLQA 5CSQA 3HN4A 4YIZA 3ZD1A 4YNXA 4FXGG 3GOVA 4A5TS 1NWVA 1G4GA 2Q8AA 5COEA 2I2LA 2Y8RA 2KMSA 5HYUB 5CS1A 4KKDA 3MKPA 3NJAA 1GKGA 1ZJKA 3VWOA 3MQLA 3ZLEA 1HCCA 5CT1A 2LL4M 2J8JA 1U5MA 3ZD2A 2JGXA 2CG6A 2XRDA 5CP9A 3K3TA 1YXEA 2J8LA 4Z09A 4Z0FA 2Y8SA 1W81A 3O8EB 5I0QB 1OK3A 5HZPB 4DJZA 3WSYA 3EJHA 2CKUA 3SRJA 1H04P 3CALA 4MUCA 4APMA 1E8BA 5EOKA 2RL0A 2X2ZA 1NK1A 2K13X 2W81A 2QY0A 2G7IA 3F6KA 3R62A 3OEDC 2YILA 4JHSA 4ZH1D 3KXVA 1O9AA 1GHQB 1HKYA 2XQWC 2XWJI 2IZ4A 2JRAA 2Y8TA 1OK2A 4LOTA 3T5OA 2QJ4A 1VVDA 5CS9A 3KZJA 1QUBA 3ZWZA 3HMTA 1QGBA 1RLHA 4K12A 1GP9A 3GXEA 1GPZA 1FBRA 5JPMG 4AYMA 2RKYA 2O39C 2W80A 1E88A 1GKNA 3FGTA 2Z8VA 4ONTD 5FO8C 3FGRA 3L89M 2KRIA 2YIOA 4PZ5A 4IGDA 3OP8A 4B2SA 1Q3XA 1Z40A 1VVCA 2V8EA 4Z0DA 1SS2A 2BZMA 2UWNA 2YBYA 4N7EA 2Q8BA 4F4OC 1BHTA 1LY2A 2YIPA 1TPNA 2RKZA 2YRAA 4C16A 2JGWA 5HYPA 2WIIC 1OJVA 1UOTP 1HFIA 1HFHA 3ZLDA 3RJ3D 4DURA 1SRZA 1OK1A 3OXUD 1W8KA 1ELVA 2XWBF 1TPMA 2KL5A 4R19A 4J38B 5HYTB 1GMNA 4R1CA 4R1AA 1H2QP 3HMSA 5I25A 4UAOA 3ERBA 2MCYA 4AYIA 1C1ZA 4Z0EA 2Z8WA 2QJ2A 2EC3A 2A55A 1OJWA 3CI0J 1OK9A
chains in the Genus database with same CATH topology
3SRIA 5CT3A 5CS5A 4IUAA 4R1BA 4YIVA 4PO7A 4BWCA 4APLA 3WSXA 1GMOA 2F83A 3HMRA 5EODA 4MSLA 5CS3A 4UV6A 2HGFA 3SP8A 1I8NA 2LL3A 5CT2A 5CSQA 3HN4A 4YIZA 4A5TS 2Q8AA 5COEA 2I2LA 2Y8RA 5CS1A 3MKPA 3NJAA 3ZLEA 5CT1A 2LL4M 2J8JA 5CP9A 1YXEA 2J8LA 4Z09A 4Z0FA 2Y8SA 1W81A 3WSYA 3SRJA 4APMA 5EOKA 2X2ZA 1NK1A 2K13X 3F6KA 2YILA 1HKYA 2Y8TA 2QJ4A 5CS9A 3ZWZA 3HMTA 1GP9A 2Z8VA 3FGTA 3FGRA 2YIOA 1Z40A 4Z0DA 4N7EA 2Q8BA 1BHTA 2YIPA 3ZLDA 4DURA 1W8KA 2KL5A 4R19A 1GMNA 4R1CA 4R1AA 3HMSA 5I25A 4UAOA 4Z0EA 2Z8WA 2QJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X2Z A;  3SRI A;  1NK1 A;  2YIO A;  4A5T S;  2K13 X;  2Q8A A;  5COE A;  5CT3 A;  5CSQ A;  5CS5 A;  2Y8R A;  4IUA A;  1Z40 A;  4R1B A;  2YIL A;  5CS1 A;  4Z0D A;  3MKP A;  1HKY A;  2Q8B A;  2Y8T A;  3ZLE A;  1BHT A;  2QJ4 A;  2LL4 M;  4APL A;  2J8J A;  5CT1 A;  2YIP A;  5CS9 A;  3ZWZ A;  3HMT A;  5CP9 A;  1GMO A;  1YXE A;  2F83 A;  2J8L A;  3ZLD A;  3HMR A;  4Z09 A;  2Y8S A;  4DUR A;  4Z0F A;  1W81 A;  5EOD A;  1W8K A;  1GP9 A;  4R19 A;  5CS3 A;  1GMN A;  4R1C A;  4UV6 A;  2HGF A;  3HMS A;  4R1A A;  3SRJ A;  5I25 A;  4UAO A;  3SP8 A;  2Z8V A;  1I8N A;  2LL3 A;  4Z0E A;  2Z8W A;  2QJ2 A;  5CT2 A;  3HN4 A;  4APM A;  5EOK A;  4YIZ A; 
#chains in the Genus database with same CATH topology
 3SRI A;  3TVJ A;  1QO6 A;  4LOS A;  5CT3 A;  3IU3 I;  5CS5 A;  2EHF A;  4A5W B;  4CSY A;  3SW0 X;  2MCZ A;  5DN5 A;  1PPQ A;  4IUA A;  4R1B A;  1H2P P;  4YIV A;  4PO7 A;  4BWC A;  5DN4 A;  1CKL A;  1MD7 A;  2B5I D;  4APL A;  3WSX A;  2RLP A;  3IX0 A;  2XRB A;  3NFP I;  1H03 P;  2IZ3 A;  1G4F A;  1GMO A;  2ZYC A;  1MD8 A;  2F83 A;  4WJG 2;  3HMR A;  5EOD A;  3M7P A;  2CG7 A;  4AYD A;  1Z92 B;  4MSL A;  4B2R A;  4AYE A;  5CS3 A;  4UV6 A;  2HGF A;  1OJY A;  3INB C;  2LOJ A;  1E5G A;  1TPG A;  3ZRZ A;  1I8N A;  3SP8 A;  2ERJ A;  2LL3 A;  5CT2 A;  2RLQ A;  5CSQ A;  3HN4 A;  4YIZ A;  3ZD1 A;  4YNX A;  4FXG G;  3GOV A;  4A5T S;  1NWV A;  1G4G A;  2Q8A A;  5COE A;  2I2L A;  2Y8R A;  2KMS A;  5HYU B;  5CS1 A;  4KKD A;  3MKP A;  3NJA A;  1GKG A;  1ZJK A;  3VWO A;  3MQL A;  3ZLE A;  1HCC A;  5CT1 A;  2LL4 M;  2J8J A;  1U5M A;  3ZD2 A;  2JGX A;  2CG6 A;  2XRD A;  5CP9 A;  3K3T A;  1YXE A;  2J8L A;  4Z09 A;  4Z0F A;  2Y8S A;  1W81 A;  3O8E B;  5I0Q B;  1OK3 A;  5HZP B;  4DJZ A;  3WSY A;  3EJH A;  2CKU A;  3SRJ A;  1H04 P;  3CAL A;  4MUC A;  4APM A;  1E8B A;  5EOK A;  2RL0 A;  2X2Z A;  1NK1 A;  2K13 X;  2W81 A;  2QY0 A;  2G7I A;  3F6K A;  3R62 A;  3OED C;  2YIL A;  4JHS A;  4ZH1 D;  3KXV A;  1O9A A;  1GHQ B;  1HKY A;  2XQW C;  2XWJ I;  2IZ4 A;  2JRA A;  2Y8T A;  1OK2 A;  4LOT A;  3T5O A;  2QJ4 A;  1VVD A;  5CS9 A;  3KZJ A;  1QUB A;  3ZWZ A;  3HMT A;  1QGB A;  1RLH A;  4K12 A;  1GP9 A;  3GXE A;  1GPZ A;  1FBR A;  5JPM G;  4AYM A;  2RKY A;  2O39 C;  2W80 A;  1E88 A;  1GKN A;  3FGT A;  2Z8V A;  4ONT D;  5FO8 C;  3FGR A;  3L89 M;  2KRI A;  2YIO A;  4PZ5 A;  4IGD A;  3OP8 A;  4B2S A;  1Q3X A;  1Z40 A;  1VVC A;  2V8E A;  4Z0D A;  1SS2 A;  2BZM A;  2UWN A;  2YBY A;  4N7E A;  2Q8B A;  4F4O C;  1BHT A;  1LY2 A;  2YIP A;  1TPN A;  2RKZ A;  2YRA A;  4C16 A;  2JGW A;  5HYP A;  2WII C;  1OJV A;  1UOT P;  1HFI A;  1HFH A;  3ZLD A;  3RJ3 D;  4DUR A;  1SRZ A;  1OK1 A;  3OXU D;  1W8K A;  1ELV A;  2XWB F;  1TPM A;  2KL5 A;  4R19 A;  4J38 B;  5HYT B;  1GMN A;  4R1C A;  4R1A A;  1H2Q P;  3HMS A;  5I25 A;  4UAO A;  3ERB A;  2MCY A;  4AYI A;  1C1Z A;  4Z0E A;  2Z8W A;  2QJ2 A;  2EC3 A;  2A55 A;  1OJW A;  3CI0 J;  1OK9 A; 
#chains in the Genus database with same CATH homology
 3SRI A;  5CT3 A;  5CS5 A;  4IUA A;  4R1B A;  4YIV A;  4PO7 A;  4BWC A;  4APL A;  3WSX A;  1GMO A;  2F83 A;  3HMR A;  5EOD A;  4MSL A;  5CS3 A;  4UV6 A;  2HGF A;  3SP8 A;  1I8N A;  2LL3 A;  5CT2 A;  5CSQ A;  3HN4 A;  4YIZ A;  4A5T S;  2Q8A A;  5COE A;  2I2L A;  2Y8R A;  5CS1 A;  3MKP A;  3NJA A;  3ZLE A;  5CT1 A;  2LL4 M;  2J8J A;  5CP9 A;  1YXE A;  2J8L A;  4Z09 A;  4Z0F A;  2Y8S A;  1W81 A;  3WSY A;  3SRJ A;  4APM A;  5EOK A;  2X2Z A;  1NK1 A;  2K13 X;  3F6K A;  2YIL A;  1HKY A;  2Y8T A;  2QJ4 A;  5CS9 A;  3ZWZ A;  3HMT A;  1GP9 A;  2Z8V A;  3FGT A;  3FGR A;  2YIO A;  1Z40 A;  4Z0D A;  4N7E A;  2Q8B A;  1BHT A;  2YIP A;  3ZLD A;  4DUR A;  1W8K A;  2KL5 A;  4R19 A;  1GMN A;  4R1C A;  4R1A A;  3HMS A;  5I25 A;  4UAO A;  4Z0E A;  2Z8W A;  2QJ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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