1UW6A

X-ray structure of acetylcholine binding protein (achbp) in complex with nicotine
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
208
structure length
208
Chain Sequence
EFDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-12)TI1 (15-18)EMPTYO1 (19-21)TIV1 (21-24)S1 (27-42)TI12 (166-169)S11 (171-184)TIV3 (42-45)TI2 (43-46)S2 (47-59)TII1 (125-128)O3 (123-136)S7 (110-113)3H1 (61-63)TI4 (106-109)TIV4 (67-70)S3 (73-77)3H2 (78-80)S6 (102-106)S4 (86-88)S9 (134-142)TI3 (88-91)S5 (96-97)S8 (116-122)O2 (100-102)TI5 (127-130)TI6 (130-133)TI13 (185-188)TI7 (142-145)TI8 (146-149)S10 (150-154)S12 (191-203)TI10 (160-163)TI11 (162-165)Updating...
connected with : NaN
molecule tags Glycoprotein
source organism Lymnaea stagnalis
publication title Nicotine and Carbamylcholine Binding to Nicotinic Acetylcholine Receptors as Studied in Achbp Crystal Structures
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN
total genus 52
structure length 208
sequence length 208
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
ec nomenclature
pdb deposition date 2004-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 1uw6A00
2XQAA 3PMZA 5KE4A 3UU5A 4XHEA 2ZJVA 4ILBA 4HQPA 2C9TA 3U8KA 5HEJA 2XZ5A 4ZK4A 4HFEA 3WTLA 3TLVA 5HCJA 4AFTA 2PGZA 4QABA 3TLUA 3UU8A 4LMKA 2WZYA 5HCMA 3C79A 3SQ6A 3RQUA 5AINA 4A98A 2XQ4A 2YN6A 2BR8A 4COFA 3WTOA 4NZBA 5L4EA 4UXUA 2QC1B 2W8GA 3JAFA 1I9BA 3UQ4A 3JADA 5BP0A 2W8FA 4QACA 3WTNA 2XQ5A 3GUAA 2XNTA 4IL9A 2BYNA 5L4HA 2X00A 3U8LA 5LXBA 4FRRA 4D01A 2Y56A 3U8MA 3WTMA 5AFKA 5KZUA 2WNLA 4F8HA 2XQ7A 4LMLA 5BW2A 5AFMB 2BG9C 4A97A 3C84A 4ZJSA 2UZ6A 5HEGA 5IUXA 4QH5A 2BYRA 4X5TA 3UU4A 3TLSA 2YMDA 3IGQA 2BYSA 2YKSA 5TVCA 3RQWA 2XQ9A 2PH9A 4AFGA 1UW6A 4NPPA 4QAAA 4TWDA 3WTHA 3RIFA 4B5DA 3WTIA 2WNCA 2ZJUA 2XYSA 4WV9A 3SIOA 2BG9A 3UU3A 5AFNA 2XNVA 2XQ6A 3EAMA 3WTJA 4QH4A 4UM3A 4PIRA 4IREA 2XQ8A 4BFQA 1UV6A 3RHWA 4TWHA 2Y54A 4ZRUA 2XQ3A 3WIPA 4HFHA 2XZ6A 3ZDHA 4TNWA 4ZJTA 1UX2A 2WN9A 4Z91A 4TNVA 5HEUA 5CO5A 5FJVA 4TWFA 4LMJA 5L47A 3UU6A 4EZ1A 5LG3A 5J5GA 4ILCA 4DBMA 4ZR6A 2XNUA 4XK9A 5HEOA 4HFIA 3U8JA 5AFLA 2WNJA 2VL0A 2XYTA 5J5IA 2BG9E 2Y7YA 4HFDA 4UY2A 5J5FA 4HFBA 3UQ7A 4BQTA 5JMEA 5AFHA 4ALXA 2BYPA 2BG9B 3JAEA 2YMEA 4IL4A 3PEOA 5SYOA 2BYQA 4ZZCA 3TLWA 4ILAA 3SQ9A 3P50A 5J5HA 4UM1A 5AFMA 4QH1A 3RIAA 3T4MA 2X00D 3U8NA 2Y58A 4HFCA 3RI5A 4ZZBA 3ZDGA 3EI0A 4UM3S 4ZK1A 2YOEA 4AFHA 2Y57A 5CFBA 2BR7A 3ZKRA 5J0ZA 4Z90A 5HEHA 5AFJA 3P4WA 3UUBA 3LSVA 4UM3P 3SH1A 3TLTA 5BRXA 2BJ0A 3WTKA 3EHZA
chains in the Genus database with same CATH superfamily
2XQAA 3PMZA 5KE4A 3UU5A 4XHEA 2ZJVA 4ILBA 4HQPA 2C9TA 3U8KA 5HEJA 2XZ5A 4ZK4A 4HFEA 3WTLA 3TLVA 5HCJA 4AFTA 2PGZA 4QABA 3TLUA 3UU8A 4LMKA 2WZYA 5HCMA 3C79A 3SQ6A 3RQUA 5AINA 4A98A 2XQ4A 2YN6A 2BR8A 4COFA 3WTOA 4NZBA 5L4EA 4UXUA 2QC1B 2W8GA 3JAFA 1I9BA 3UQ4A 3JADA 5BP0A 2W8FA 4QACA 3WTNA 2XQ5A 3GUAA 2XNTA 4IL9A 2BYNA 5L4HA 2X00A 3U8LA 5LXBA 4FRRA 4D01A 2Y56A 3U8MA 3WTMA 5AFKA 5KZUA 2WNLA 4F8HA 2XQ7A 4LMLA 5BW2A 5AFMB 2BG9C 4A97A 3C84A 4ZJSA 2UZ6A 5HEGA 5IUXA 4QH5A 2BYRA 4X5TA 3UU4A 3TLSA 2YMDA 3IGQA 2BYSA 2YKSA 5TVCA 3RQWA 2XQ9A 2PH9A 4AFGA 1UW6A 4NPPA 4QAAA 4TWDA 3WTHA 3RIFA 4B5DA 3WTIA 2WNCA 2ZJUA 2XYSA 4WV9A 3SIOA 2BG9A 3UU3A 5AFNA 2XNVA 2XQ6A 3EAMA 3WTJA 4QH4A 4UM3A 4PIRA 4IREA 2XQ8A 4BFQA 1UV6A 3RHWA 4TWHA 2Y54A 4ZRUA 2XQ3A 3WIPA 4HFHA 2XZ6A 3ZDHA 4TNWA 4ZJTA 1UX2A 2WN9A 4Z91A 4TNVA 5HEUA 5CO5A 5FJVA 4TWFA 4LMJA 5L47A 3UU6A 4EZ1A 5LG3A 5J5GA 4ILCA 4DBMA 4ZR6A 2XNUA 4XK9A 5HEOA 4HFIA 3U8JA 5AFLA 2WNJA 2VL0A 2XYTA 5J5IA 2BG9E 2Y7YA 4HFDA 4UY2A 5J5FA 4HFBA 3UQ7A 4BQTA 5JMEA 5AFHA 4ALXA 2BYPA 2BG9B 3JAEA 2YMEA 4IL4A 3PEOA 5SYOA 2BYQA 4ZZCA 3TLWA 4ILAA 3SQ9A 3P50A 5J5HA 4UM1A 5AFMA 4QH1A 3RIAA 3T4MA 2X00D 3U8NA 2Y58A 4HFCA 3RI5A 4ZZBA 3ZDGA 3EI0A 4UM3S 4ZK1A 2YOEA 4AFHA 2Y57A 5CFBA 2BR7A 3ZKRA 5J0ZA 4Z90A 5HEHA 5AFJA 3P4WA 3UUBA 3LSVA 4UM3P 3SH1A 3TLTA 5BRXA 2BJ0A 3WTKA 3EHZA
chains in the Genus database with same CATH topology
2XQAA 3PMZA 5KE4A 3UU5A 4XHEA 2ZJVA 4ILBA 4HQPA 2C9TA 3U8KA 5HEJA 2XZ5A 4ZK4A 4HFEA 3WTLA 3TLVA 5HCJA 4AFTA 2PGZA 4QABA 3TLUA 3UU8A 4LMKA 2WZYA 5HCMA 3C79A 3SQ6A 3RQUA 5AINA 4A98A 2XQ4A 2YN6A 2BR8A 4COFA 3WTOA 4NZBA 5L4EA 4UXUA 2QC1B 2W8GA 3JAFA 1I9BA 3UQ4A 3JADA 5BP0A 2W8FA 4QACA 3WTNA 2XQ5A 3GUAA 2XNTA 4IL9A 2BYNA 5L4HA 2X00A 3U8LA 5LXBA 4FRRA 4D01A 2Y56A 3U8MA 3WTMA 5AFKA 5KZUA 2WNLA 4F8HA 2XQ7A 4LMLA 5BW2A 5AFMB 2BG9C 4A97A 3C84A 4ZJSA 2UZ6A 5HEGA 5IUXA 4QH5A 2BYRA 4X5TA 3UU4A 3TLSA 2YMDA 3IGQA 2BYSA 2YKSA 5TVCA 3RQWA 2XQ9A 2PH9A 4AFGA 1UW6A 4NPPA 4QAAA 4TWDA 3WTHA 3RIFA 4B5DA 3WTIA 2WNCA 2ZJUA 2XYSA 4WV9A 3SIOA 2BG9A 3UU3A 5AFNA 2XNVA 2XQ6A 3EAMA 3WTJA 4QH4A 4UM3A 4PIRA 4IREA 2XQ8A 4BFQA 1UV6A 3RHWA 4TWHA 2Y54A 4ZRUA 2XQ3A 3WIPA 4HFHA 2XZ6A 3ZDHA 4TNWA 4ZJTA 1UX2A 2WN9A 4Z91A 4TNVA 5HEUA 5CO5A 5FJVA 4TWFA 4LMJA 5L47A 3UU6A 4EZ1A 5LG3A 5J5GA 4ILCA 4DBMA 4ZR6A 2XNUA 4XK9A 5HEOA 4HFIA 3U8JA 5AFLA 2WNJA 2VL0A 2XYTA 5J5IA 2BG9E 2Y7YA 4HFDA 4UY2A 5J5FA 4HFBA 3UQ7A 4BQTA 5JMEA 5AFHA 4ALXA 2BYPA 2BG9B 3JAEA 2YMEA 4IL4A 3PEOA 5SYOA 2BYQA 4ZZCA 3TLWA 4ILAA 3SQ9A 3P50A 5J5HA 4UM1A 5AFMA 4QH1A 3RIAA 3T4MA 2X00D 3U8NA 2Y58A 4HFCA 3RI5A 4ZZBA 3ZDGA 3EI0A 4UM3S 4ZK1A 2YOEA 4AFHA 2Y57A 5CFBA 2BR7A 3ZKRA 5J0ZA 4Z90A 5HEHA 5AFJA 3P4WA 3UUBA 3LSVA 4UM3P 3SH1A 3TLTA 5BRXA 2BJ0A 3WTKA 3EHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XQA A;  3PMZ A;  5KE4 A;  3UU5 A;  4XHE A;  2ZJV A;  4ILB A;  4HQP A;  2C9T A;  3U8K A;  5HEJ A;  2XZ5 A;  4ZK4 A;  4HFE A;  3WTL A;  3TLV A;  5HCJ A;  4AFT A;  2PGZ A;  4QAB A;  3TLU A;  3UU8 A;  4LMK A;  2WZY A;  5HCM A;  3C79 A;  3SQ6 A;  3RQU A;  5AIN A;  4A98 A;  2XQ4 A;  2YN6 A;  2BR8 A;  4COF A;  3WTO A;  4NZB A;  5L4E A;  4UXU A;  2QC1 B;  2W8G A;  3JAF A;  1I9B A;  3UQ4 A;  3JAD A;  5BP0 A;  2W8F A;  4QAC A;  3WTN A;  2XQ5 A;  3GUA A;  2XNT A;  4IL9 A;  2BYN A;  5L4H A;  2X00 A;  3U8L A;  5LXB A;  4FRR A;  4D01 A;  2Y56 A;  3U8M A;  3WTM A;  5AFK A;  5KZU A;  2WNL A;  4F8H A;  2XQ7 A;  4LML A;  5BW2 A;  5AFM B;  2BG9 C;  4A97 A;  3C84 A;  4ZJS A;  2UZ6 A;  5HEG A;  5IUX A;  4QH5 A;  2BYR A;  4X5T A;  3UU4 A;  3TLS A;  2YMD A;  3IGQ A;  2BYS A;  2YKS A;  5TVC A;  3RQW A;  2XQ9 A;  2PH9 A;  4AFG A;  1UW6 A;  4NPP A;  4QAA A;  4TWD A;  3WTH A;  3RIF A;  4B5D A;  3WTI A;  2WNC A;  2ZJU A;  2XYS A;  4WV9 A;  3SIO A;  2BG9 A;  3UU3 A;  5AFN A;  2XNV A;  2XQ6 A;  3EAM A;  3WTJ A;  4QH4 A;  4UM3 A;  4PIR A;  4IRE A;  2XQ8 A;  4BFQ A;  1UV6 A;  3RHW A;  4TWH A;  2Y54 A;  4ZRU A;  2XQ3 A;  3WIP A;  4HFH A;  2XZ6 A;  3ZDH A;  4TNW A;  4ZJT A;  1UX2 A;  2WN9 A;  4Z91 A;  4TNV A;  5HEU A;  5CO5 A;  5FJV A;  4TWF A;  4LMJ A;  5L47 A;  3UU6 A;  4EZ1 A;  5LG3 A;  5J5G A;  4ILC A;  4DBM A;  4ZR6 A;  2XNU A;  4XK9 A;  5HEO A;  4HFI A;  3U8J A;  5AFL A;  2WNJ A;  2VL0 A;  2XYT A;  5J5I A;  2BG9 E;  2Y7Y A;  4HFD A;  4UY2 A;  5J5F A;  4HFB A;  3UQ7 A;  4BQT A;  5JME A;  5AFH A;  4ALX A;  2BYP A;  2BG9 B;  3JAE A;  2YME A;  4IL4 A;  3PEO A;  5SYO A;  2BYQ A;  4ZZC A;  3TLW A;  4ILA A;  3SQ9 A;  3P50 A;  5J5H A;  4UM1 A;  5AFM A;  4QH1 A;  3RIA A;  3T4M A;  2X00 D;  3U8N A;  2Y58 A;  4HFC A;  3RI5 A;  4ZZB A;  3ZDG A;  3EI0 A;  4UM3 S;  4ZK1 A;  2YOE A;  4AFH A;  2Y57 A;  5CFB A;  2BR7 A;  3ZKR A;  5J0Z A;  4Z90 A;  5HEH A;  5AFJ A;  3P4W A;  3UUB A;  3LSV A;  4UM3 P;  3SH1 A;  3TLT A;  5BRX A;  2BJ0 A;  3WTK A;  3EHZ A; 
#chains in the Genus database with same CATH topology
 2XQA A;  3PMZ A;  5KE4 A;  3UU5 A;  4XHE A;  2ZJV A;  4ILB A;  4HQP A;  2C9T A;  3U8K A;  5HEJ A;  2XZ5 A;  4ZK4 A;  4HFE A;  3WTL A;  3TLV A;  5HCJ A;  4AFT A;  2PGZ A;  4QAB A;  3TLU A;  3UU8 A;  4LMK A;  2WZY A;  5HCM A;  3C79 A;  3SQ6 A;  3RQU A;  5AIN A;  4A98 A;  2XQ4 A;  2YN6 A;  2BR8 A;  4COF A;  3WTO A;  4NZB A;  5L4E A;  4UXU A;  2QC1 B;  2W8G A;  3JAF A;  1I9B A;  3UQ4 A;  3JAD A;  5BP0 A;  2W8F A;  4QAC A;  3WTN A;  2XQ5 A;  3GUA A;  2XNT A;  4IL9 A;  2BYN A;  5L4H A;  2X00 A;  3U8L A;  5LXB A;  4FRR A;  4D01 A;  2Y56 A;  3U8M A;  3WTM A;  5AFK A;  5KZU A;  2WNL A;  4F8H A;  2XQ7 A;  4LML A;  5BW2 A;  5AFM B;  2BG9 C;  4A97 A;  3C84 A;  4ZJS A;  2UZ6 A;  5HEG A;  5IUX A;  4QH5 A;  2BYR A;  4X5T A;  3UU4 A;  3TLS A;  2YMD A;  3IGQ A;  2BYS A;  2YKS A;  5TVC A;  3RQW A;  2XQ9 A;  2PH9 A;  4AFG A;  1UW6 A;  4NPP A;  4QAA A;  4TWD A;  3WTH A;  3RIF A;  4B5D A;  3WTI A;  2WNC A;  2ZJU A;  2XYS A;  4WV9 A;  3SIO A;  2BG9 A;  3UU3 A;  5AFN A;  2XNV A;  2XQ6 A;  3EAM A;  3WTJ A;  4QH4 A;  4UM3 A;  4PIR A;  4IRE A;  2XQ8 A;  4BFQ A;  1UV6 A;  3RHW A;  4TWH A;  2Y54 A;  4ZRU A;  2XQ3 A;  3WIP A;  4HFH A;  2XZ6 A;  3ZDH A;  4TNW A;  4ZJT A;  1UX2 A;  2WN9 A;  4Z91 A;  4TNV A;  5HEU A;  5CO5 A;  5FJV A;  4TWF A;  4LMJ A;  5L47 A;  3UU6 A;  4EZ1 A;  5LG3 A;  5J5G A;  4ILC A;  4DBM A;  4ZR6 A;  2XNU A;  4XK9 A;  5HEO A;  4HFI A;  3U8J A;  5AFL A;  2WNJ A;  2VL0 A;  2XYT A;  5J5I A;  2BG9 E;  2Y7Y A;  4HFD A;  4UY2 A;  5J5F A;  4HFB A;  3UQ7 A;  4BQT A;  5JME A;  5AFH A;  4ALX A;  2BYP A;  2BG9 B;  3JAE A;  2YME A;  4IL4 A;  3PEO A;  5SYO A;  2BYQ A;  4ZZC A;  3TLW A;  4ILA A;  3SQ9 A;  3P50 A;  5J5H A;  4UM1 A;  5AFM A;  4QH1 A;  3RIA A;  3T4M A;  2X00 D;  3U8N A;  2Y58 A;  4HFC A;  3RI5 A;  4ZZB A;  3ZDG A;  3EI0 A;  4UM3 S;  4ZK1 A;  2YOE A;  4AFH A;  2Y57 A;  5CFB A;  2BR7 A;  3ZKR A;  5J0Z A;  4Z90 A;  5HEH A;  5AFJ A;  3P4W A;  3UUB A;  3LSV A;  4UM3 P;  3SH1 A;  3TLT A;  5BRX A;  2BJ0 A;  3WTK A;  3EHZ A; 
#chains in the Genus database with same CATH homology
 2XQA A;  3PMZ A;  5KE4 A;  3UU5 A;  4XHE A;  2ZJV A;  4ILB A;  4HQP A;  2C9T A;  3U8K A;  5HEJ A;  2XZ5 A;  4ZK4 A;  4HFE A;  3WTL A;  3TLV A;  5HCJ A;  4AFT A;  2PGZ A;  4QAB A;  3TLU A;  3UU8 A;  4LMK A;  2WZY A;  5HCM A;  3C79 A;  3SQ6 A;  3RQU A;  5AIN A;  4A98 A;  2XQ4 A;  2YN6 A;  2BR8 A;  4COF A;  3WTO A;  4NZB A;  5L4E A;  4UXU A;  2QC1 B;  2W8G A;  3JAF A;  1I9B A;  3UQ4 A;  3JAD A;  5BP0 A;  2W8F A;  4QAC A;  3WTN A;  2XQ5 A;  3GUA A;  2XNT A;  4IL9 A;  2BYN A;  5L4H A;  2X00 A;  3U8L A;  5LXB A;  4FRR A;  4D01 A;  2Y56 A;  3U8M A;  3WTM A;  5AFK A;  5KZU A;  2WNL A;  4F8H A;  2XQ7 A;  4LML A;  5BW2 A;  5AFM B;  2BG9 C;  4A97 A;  3C84 A;  4ZJS A;  2UZ6 A;  5HEG A;  5IUX A;  4QH5 A;  2BYR A;  4X5T A;  3UU4 A;  3TLS A;  2YMD A;  3IGQ A;  2BYS A;  2YKS A;  5TVC A;  3RQW A;  2XQ9 A;  2PH9 A;  4AFG A;  1UW6 A;  4NPP A;  4QAA A;  4TWD A;  3WTH A;  3RIF A;  4B5D A;  3WTI A;  2WNC A;  2ZJU A;  2XYS A;  4WV9 A;  3SIO A;  2BG9 A;  3UU3 A;  5AFN A;  2XNV A;  2XQ6 A;  3EAM A;  3WTJ A;  4QH4 A;  4UM3 A;  4PIR A;  4IRE A;  2XQ8 A;  4BFQ A;  1UV6 A;  3RHW A;  4TWH A;  2Y54 A;  4ZRU A;  2XQ3 A;  3WIP A;  4HFH A;  2XZ6 A;  3ZDH A;  4TNW A;  4ZJT A;  1UX2 A;  2WN9 A;  4Z91 A;  4TNV A;  5HEU A;  5CO5 A;  5FJV A;  4TWF A;  4LMJ A;  5L47 A;  3UU6 A;  4EZ1 A;  5LG3 A;  5J5G A;  4ILC A;  4DBM A;  4ZR6 A;  2XNU A;  4XK9 A;  5HEO A;  4HFI A;  3U8J A;  5AFL A;  2WNJ A;  2VL0 A;  2XYT A;  5J5I A;  2BG9 E;  2Y7Y A;  4HFD A;  4UY2 A;  5J5F A;  4HFB A;  3UQ7 A;  4BQT A;  5JME A;  5AFH A;  4ALX A;  2BYP A;  2BG9 B;  3JAE A;  2YME A;  4IL4 A;  3PEO A;  5SYO A;  2BYQ A;  4ZZC A;  3TLW A;  4ILA A;  3SQ9 A;  3P50 A;  5J5H A;  4UM1 A;  5AFM A;  4QH1 A;  3RIA A;  3T4M A;  2X00 D;  3U8N A;  2Y58 A;  4HFC A;  3RI5 A;  4ZZB A;  3ZDG A;  3EI0 A;  4UM3 S;  4ZK1 A;  2YOE A;  4AFH A;  2Y57 A;  5CFB A;  2BR7 A;  3ZKR A;  5J0Z A;  4Z90 A;  5HEH A;  5AFJ A;  3P4W A;  3UUB A;  3LSV A;  4UM3 P;  3SH1 A;  3TLT A;  5BRX A;  2BJ0 A;  3WTK A;  3EHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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