3U8LA

Crystal structure of the acetylcholine binding protein (achbp) from lymnaea stagnalis in complex with ns3570 (1-(5-phenylpyridin-3-yl)-1,4-diazepane)
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
202
Chain Sequence
LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein/agonist
source organism Lymnaea stagnalis
publication title Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 49
structure length 202
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2011-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3u8lA00
4WV9A 3TLUA 3UU3A 4ZZCA 5CO5A 4QAAA 2QC1B 3EI0A 2YMEA 4ZRUA 3C84A 3C79A 2BG9A 4HFEA 4Z90A 2X00A 5HEHA 2XYTA 3WTKA 3WTOA 4HFHA 2XQ4A 3U8LA 5CFBA 3SH1A 4AFGA 3EAMA 2YKSA 4XHEA 4B5DA 4HFBA 4UXUA 4HFCA 2PGZA 5HEJA 3RIAA 3UQ7A 1UX2A 4BQTA 3PMZA 4QACA 3U8JA 2XQ5A 2Y58A 2XNVA 4NZBA 4HQPA 4BFQA 3ZDGA 4TWDA 4LMJA 4EZ1A 2ZJVA 4UM3A 2WN9A 2XQ3A 3JADA 4UY2A 4ILBA 2BYQA 4A97A 4LMKA 3RQWA 3UQ4A 5HEUA 2XYSA 2WNCA 2BYPA 5AFNA 4F8HA 3PEOA 5J5FA 2WNLA 4D01A 2X00D 3EHZA 5AFJA 3RHWA 4HFIA 5L4EA 5AINA 4IL4A 5KE4A 4XK9A 3UU6A 3TLSA 5LG3A 4LMLA 4X5TA 4DBMA 3P4WA 5AFHA 5L4HA 5IUXA 2BG9E 2YN6A 3UU5A 2XZ6A 4ZR6A 3UU4A 5KZUA 3U8NA 4UM3S 5LXBA 4HFDA 2WNJA 5SYOA 2Y7YA 5AFKA 3WTMA 4ZZBA 3WIPA 5L47A 2XZ5A 2W8FA 3WTIA 4ZK4A 3LSVA 4UM3P 3ZDHA 2BYRA 2UZ6A 3U8MA 3P50A 2BR7A 5HCJA 4ZJSA 2BJ0A 1UW6A 2Y56A 4QH4A 2XNUA 2Y54A 3UUBA 4ALXA 4AFTA 4IREA 3ZKRA 5BW2A 5FJVA 3WTJA 5HEGA 5AFLA 3SQ9A 5J5HA 5TVCA 4A98A 2C9TA 4COFA 4NPPA 2WZYA 2XNTA 4TNVA 3WTLA 3WTHA 5AFMB 5BRXA 2BYSA 2XQ6A 2W8GA 4ZJTA 2YMDA 2XQ9A 2Y57A 5J5GA 4ZK1A 5HCMA 4FRRA 4PIRA 3JAFA 3U8KA 3UU8A 3JAEA 4TNWA 2XQ7A 4IL9A 3RQUA 1UV6A 5BP0A 3TLTA 2VL0A 4Z91A 1I9BA 2BR8A 5HEOA 3RIFA 3TLVA 5J0ZA 2XQ8A 2YOEA 5AFMA 2PH9A 3SIOA 3WTNA 5J5IA 4QABA 2BG9B 3T4MA 2BG9C 4ILCA 4ILAA 4TWHA 2ZJUA 3GUAA 4TWFA 5JMEA 2XQAA 4UM1A 3IGQA 4AFHA 3SQ6A 4QH5A 2BYNA 3RI5A 4QH1A 3TLWA
chains in the Genus database with same CATH superfamily
4WV9A 3TLUA 3UU3A 4ZZCA 5CO5A 4QAAA 2QC1B 3EI0A 2YMEA 4ZRUA 3C84A 3C79A 2BG9A 4HFEA 4Z90A 2X00A 5HEHA 2XYTA 3WTKA 3WTOA 4HFHA 2XQ4A 3U8LA 5CFBA 3SH1A 4AFGA 3EAMA 2YKSA 4XHEA 4B5DA 4HFBA 4UXUA 4HFCA 2PGZA 5HEJA 3RIAA 3UQ7A 1UX2A 4BQTA 3PMZA 4QACA 3U8JA 2XQ5A 2Y58A 2XNVA 4NZBA 4HQPA 4BFQA 3ZDGA 4TWDA 4LMJA 4EZ1A 2ZJVA 4UM3A 2WN9A 2XQ3A 3JADA 4UY2A 4ILBA 2BYQA 4A97A 4LMKA 3RQWA 3UQ4A 5HEUA 2XYSA 2WNCA 2BYPA 5AFNA 4F8HA 3PEOA 5J5FA 2WNLA 4D01A 2X00D 3EHZA 5AFJA 3RHWA 4HFIA 5L4EA 5AINA 4IL4A 5KE4A 4XK9A 3UU6A 3TLSA 5LG3A 4LMLA 4X5TA 4DBMA 3P4WA 5AFHA 5L4HA 5IUXA 2BG9E 2YN6A 3UU5A 2XZ6A 4ZR6A 3UU4A 5KZUA 3U8NA 4UM3S 5LXBA 4HFDA 2WNJA 5SYOA 2Y7YA 5AFKA 3WTMA 4ZZBA 3WIPA 5L47A 2XZ5A 2W8FA 3WTIA 4ZK4A 3LSVA 4UM3P 3ZDHA 2BYRA 2UZ6A 3U8MA 3P50A 2BR7A 5HCJA 4ZJSA 2BJ0A 1UW6A 2Y56A 4QH4A 2XNUA 2Y54A 3UUBA 4ALXA 4AFTA 4IREA 3ZKRA 5BW2A 5FJVA 3WTJA 5HEGA 5AFLA 3SQ9A 5J5HA 5TVCA 4A98A 2C9TA 4COFA 4NPPA 2WZYA 2XNTA 4TNVA 3WTLA 3WTHA 5AFMB 5BRXA 2BYSA 2XQ6A 2W8GA 4ZJTA 2YMDA 2XQ9A 2Y57A 5J5GA 4ZK1A 5HCMA 4FRRA 4PIRA 3JAFA 3U8KA 3UU8A 3JAEA 4TNWA 2XQ7A 4IL9A 3RQUA 1UV6A 5BP0A 3TLTA 2VL0A 4Z91A 1I9BA 2BR8A 5HEOA 3RIFA 3TLVA 5J0ZA 2XQ8A 2YOEA 5AFMA 2PH9A 3SIOA 3WTNA 5J5IA 4QABA 2BG9B 3T4MA 2BG9C 4ILCA 4ILAA 4TWHA 2ZJUA 3GUAA 4TWFA 5JMEA 2XQAA 4UM1A 3IGQA 4AFHA 3SQ6A 4QH5A 2BYNA 3RI5A 4QH1A 3TLWA
chains in the Genus database with same CATH topology
4WV9A 3TLUA 3UU3A 4ZZCA 5CO5A 4QAAA 2QC1B 3EI0A 2YMEA 4ZRUA 3C84A 3C79A 2BG9A 4HFEA 4Z90A 2X00A 5HEHA 2XYTA 3WTKA 3WTOA 4HFHA 2XQ4A 3U8LA 5CFBA 3SH1A 4AFGA 3EAMA 2YKSA 4XHEA 4B5DA 4HFBA 4UXUA 4HFCA 2PGZA 5HEJA 3RIAA 3UQ7A 1UX2A 4BQTA 3PMZA 4QACA 3U8JA 2XQ5A 2Y58A 2XNVA 4NZBA 4HQPA 4BFQA 3ZDGA 4TWDA 4LMJA 4EZ1A 2ZJVA 4UM3A 2WN9A 2XQ3A 3JADA 4UY2A 4ILBA 2BYQA 4A97A 4LMKA 3RQWA 3UQ4A 5HEUA 2XYSA 2WNCA 2BYPA 5AFNA 4F8HA 3PEOA 5J5FA 2WNLA 4D01A 2X00D 3EHZA 5AFJA 3RHWA 4HFIA 5L4EA 5AINA 4IL4A 5KE4A 4XK9A 3UU6A 3TLSA 5LG3A 4LMLA 4X5TA 4DBMA 3P4WA 5AFHA 5L4HA 5IUXA 2BG9E 2YN6A 3UU5A 2XZ6A 4ZR6A 3UU4A 5KZUA 3U8NA 4UM3S 5LXBA 4HFDA 2WNJA 5SYOA 2Y7YA 5AFKA 3WTMA 4ZZBA 3WIPA 5L47A 2XZ5A 2W8FA 3WTIA 4ZK4A 3LSVA 4UM3P 3ZDHA 2BYRA 2UZ6A 3U8MA 3P50A 2BR7A 5HCJA 4ZJSA 2BJ0A 1UW6A 2Y56A 4QH4A 2XNUA 2Y54A 3UUBA 4ALXA 4AFTA 4IREA 3ZKRA 5BW2A 5FJVA 3WTJA 5HEGA 5AFLA 3SQ9A 5J5HA 5TVCA 4A98A 2C9TA 4COFA 4NPPA 2WZYA 2XNTA 4TNVA 3WTLA 3WTHA 5AFMB 5BRXA 2BYSA 2XQ6A 2W8GA 4ZJTA 2YMDA 2XQ9A 2Y57A 5J5GA 4ZK1A 5HCMA 4FRRA 4PIRA 3JAFA 3U8KA 3UU8A 3JAEA 4TNWA 2XQ7A 4IL9A 3RQUA 1UV6A 5BP0A 3TLTA 2VL0A 4Z91A 1I9BA 2BR8A 5HEOA 3RIFA 3TLVA 5J0ZA 2XQ8A 2YOEA 5AFMA 2PH9A 3SIOA 3WTNA 5J5IA 4QABA 2BG9B 3T4MA 2BG9C 4ILCA 4ILAA 4TWHA 2ZJUA 3GUAA 4TWFA 5JMEA 2XQAA 4UM1A 3IGQA 4AFHA 3SQ6A 4QH5A 2BYNA 3RI5A 4QH1A 3TLWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WV9 A;  3TLU A;  3UU3 A;  4ZZC A;  5CO5 A;  4QAA A;  2QC1 B;  3EI0 A;  2YME A;  4ZRU A;  3C84 A;  3C79 A;  2BG9 A;  4HFE A;  4Z90 A;  2X00 A;  5HEH A;  2XYT A;  3WTK A;  3WTO A;  4HFH A;  2XQ4 A;  3U8L A;  5CFB A;  3SH1 A;  4AFG A;  3EAM A;  2YKS A;  4XHE A;  4B5D A;  4HFB A;  4UXU A;  4HFC A;  2PGZ A;  5HEJ A;  3RIA A;  3UQ7 A;  1UX2 A;  4BQT A;  3PMZ A;  4QAC A;  3U8J A;  2XQ5 A;  2Y58 A;  2XNV A;  4NZB A;  4HQP A;  4BFQ A;  3ZDG A;  4TWD A;  4LMJ A;  4EZ1 A;  2ZJV A;  4UM3 A;  2WN9 A;  2XQ3 A;  3JAD A;  4UY2 A;  4ILB A;  2BYQ A;  4A97 A;  4LMK A;  3RQW A;  3UQ4 A;  5HEU A;  2XYS A;  2WNC A;  2BYP A;  5AFN A;  4F8H A;  3PEO A;  5J5F A;  2WNL A;  4D01 A;  2X00 D;  3EHZ A;  5AFJ A;  3RHW A;  4HFI A;  5L4E A;  5AIN A;  4IL4 A;  5KE4 A;  4XK9 A;  3UU6 A;  3TLS A;  5LG3 A;  4LML A;  4X5T A;  4DBM A;  3P4W A;  5AFH A;  5L4H A;  5IUX A;  2BG9 E;  2YN6 A;  3UU5 A;  2XZ6 A;  4ZR6 A;  3UU4 A;  5KZU A;  3U8N A;  4UM3 S;  5LXB A;  4HFD A;  2WNJ A;  5SYO A;  2Y7Y A;  5AFK A;  3WTM A;  4ZZB A;  3WIP A;  5L47 A;  2XZ5 A;  2W8F A;  3WTI A;  4ZK4 A;  3LSV A;  4UM3 P;  3ZDH A;  2BYR A;  2UZ6 A;  3U8M A;  3P50 A;  2BR7 A;  5HCJ A;  4ZJS A;  2BJ0 A;  1UW6 A;  2Y56 A;  4QH4 A;  2XNU A;  2Y54 A;  3UUB A;  4ALX A;  4AFT A;  4IRE A;  3ZKR A;  5BW2 A;  5FJV A;  3WTJ A;  5HEG A;  5AFL A;  3SQ9 A;  5J5H A;  5TVC A;  4A98 A;  2C9T A;  4COF A;  4NPP A;  2WZY A;  2XNT A;  4TNV A;  3WTL A;  3WTH A;  5AFM B;  5BRX A;  2BYS A;  2XQ6 A;  2W8G A;  4ZJT A;  2YMD A;  2XQ9 A;  2Y57 A;  5J5G A;  4ZK1 A;  5HCM A;  4FRR A;  4PIR A;  3JAF A;  3U8K A;  3UU8 A;  3JAE A;  4TNW A;  2XQ7 A;  4IL9 A;  3RQU A;  1UV6 A;  5BP0 A;  3TLT A;  2VL0 A;  4Z91 A;  1I9B A;  2BR8 A;  5HEO A;  3RIF A;  3TLV A;  5J0Z A;  2XQ8 A;  2YOE A;  5AFM A;  2PH9 A;  3SIO A;  3WTN A;  5J5I A;  4QAB A;  2BG9 B;  3T4M A;  2BG9 C;  4ILC A;  4ILA A;  4TWH A;  2ZJU A;  3GUA A;  4TWF A;  5JME A;  2XQA A;  4UM1 A;  3IGQ A;  4AFH A;  3SQ6 A;  4QH5 A;  2BYN A;  3RI5 A;  4QH1 A;  3TLW A; 
#chains in the Genus database with same CATH topology
 4WV9 A;  3TLU A;  3UU3 A;  4ZZC A;  5CO5 A;  4QAA A;  2QC1 B;  3EI0 A;  2YME A;  4ZRU A;  3C84 A;  3C79 A;  2BG9 A;  4HFE A;  4Z90 A;  2X00 A;  5HEH A;  2XYT A;  3WTK A;  3WTO A;  4HFH A;  2XQ4 A;  3U8L A;  5CFB A;  3SH1 A;  4AFG A;  3EAM A;  2YKS A;  4XHE A;  4B5D A;  4HFB A;  4UXU A;  4HFC A;  2PGZ A;  5HEJ A;  3RIA A;  3UQ7 A;  1UX2 A;  4BQT A;  3PMZ A;  4QAC A;  3U8J A;  2XQ5 A;  2Y58 A;  2XNV A;  4NZB A;  4HQP A;  4BFQ A;  3ZDG A;  4TWD A;  4LMJ A;  4EZ1 A;  2ZJV A;  4UM3 A;  2WN9 A;  2XQ3 A;  3JAD A;  4UY2 A;  4ILB A;  2BYQ A;  4A97 A;  4LMK A;  3RQW A;  3UQ4 A;  5HEU A;  2XYS A;  2WNC A;  2BYP A;  5AFN A;  4F8H A;  3PEO A;  5J5F A;  2WNL A;  4D01 A;  2X00 D;  3EHZ A;  5AFJ A;  3RHW A;  4HFI A;  5L4E A;  5AIN A;  4IL4 A;  5KE4 A;  4XK9 A;  3UU6 A;  3TLS A;  5LG3 A;  4LML A;  4X5T A;  4DBM A;  3P4W A;  5AFH A;  5L4H A;  5IUX A;  2BG9 E;  2YN6 A;  3UU5 A;  2XZ6 A;  4ZR6 A;  3UU4 A;  5KZU A;  3U8N A;  4UM3 S;  5LXB A;  4HFD A;  2WNJ A;  5SYO A;  2Y7Y A;  5AFK A;  3WTM A;  4ZZB A;  3WIP A;  5L47 A;  2XZ5 A;  2W8F A;  3WTI A;  4ZK4 A;  3LSV A;  4UM3 P;  3ZDH A;  2BYR A;  2UZ6 A;  3U8M A;  3P50 A;  2BR7 A;  5HCJ A;  4ZJS A;  2BJ0 A;  1UW6 A;  2Y56 A;  4QH4 A;  2XNU A;  2Y54 A;  3UUB A;  4ALX A;  4AFT A;  4IRE A;  3ZKR A;  5BW2 A;  5FJV A;  3WTJ A;  5HEG A;  5AFL A;  3SQ9 A;  5J5H A;  5TVC A;  4A98 A;  2C9T A;  4COF A;  4NPP A;  2WZY A;  2XNT A;  4TNV A;  3WTL A;  3WTH A;  5AFM B;  5BRX A;  2BYS A;  2XQ6 A;  2W8G A;  4ZJT A;  2YMD A;  2XQ9 A;  2Y57 A;  5J5G A;  4ZK1 A;  5HCM A;  4FRR A;  4PIR A;  3JAF A;  3U8K A;  3UU8 A;  3JAE A;  4TNW A;  2XQ7 A;  4IL9 A;  3RQU A;  1UV6 A;  5BP0 A;  3TLT A;  2VL0 A;  4Z91 A;  1I9B A;  2BR8 A;  5HEO A;  3RIF A;  3TLV A;  5J0Z A;  2XQ8 A;  2YOE A;  5AFM A;  2PH9 A;  3SIO A;  3WTN A;  5J5I A;  4QAB A;  2BG9 B;  3T4M A;  2BG9 C;  4ILC A;  4ILA A;  4TWH A;  2ZJU A;  3GUA A;  4TWF A;  5JME A;  2XQA A;  4UM1 A;  3IGQ A;  4AFH A;  3SQ6 A;  4QH5 A;  2BYN A;  3RI5 A;  4QH1 A;  3TLW A; 
#chains in the Genus database with same CATH homology
 4WV9 A;  3TLU A;  3UU3 A;  4ZZC A;  5CO5 A;  4QAA A;  2QC1 B;  3EI0 A;  2YME A;  4ZRU A;  3C84 A;  3C79 A;  2BG9 A;  4HFE A;  4Z90 A;  2X00 A;  5HEH A;  2XYT A;  3WTK A;  3WTO A;  4HFH A;  2XQ4 A;  3U8L A;  5CFB A;  3SH1 A;  4AFG A;  3EAM A;  2YKS A;  4XHE A;  4B5D A;  4HFB A;  4UXU A;  4HFC A;  2PGZ A;  5HEJ A;  3RIA A;  3UQ7 A;  1UX2 A;  4BQT A;  3PMZ A;  4QAC A;  3U8J A;  2XQ5 A;  2Y58 A;  2XNV A;  4NZB A;  4HQP A;  4BFQ A;  3ZDG A;  4TWD A;  4LMJ A;  4EZ1 A;  2ZJV A;  4UM3 A;  2WN9 A;  2XQ3 A;  3JAD A;  4UY2 A;  4ILB A;  2BYQ A;  4A97 A;  4LMK A;  3RQW A;  3UQ4 A;  5HEU A;  2XYS A;  2WNC A;  2BYP A;  5AFN A;  4F8H A;  3PEO A;  5J5F A;  2WNL A;  4D01 A;  2X00 D;  3EHZ A;  5AFJ A;  3RHW A;  4HFI A;  5L4E A;  5AIN A;  4IL4 A;  5KE4 A;  4XK9 A;  3UU6 A;  3TLS A;  5LG3 A;  4LML A;  4X5T A;  4DBM A;  3P4W A;  5AFH A;  5L4H A;  5IUX A;  2BG9 E;  2YN6 A;  3UU5 A;  2XZ6 A;  4ZR6 A;  3UU4 A;  5KZU A;  3U8N A;  4UM3 S;  5LXB A;  4HFD A;  2WNJ A;  5SYO A;  2Y7Y A;  5AFK A;  3WTM A;  4ZZB A;  3WIP A;  5L47 A;  2XZ5 A;  2W8F A;  3WTI A;  4ZK4 A;  3LSV A;  4UM3 P;  3ZDH A;  2BYR A;  2UZ6 A;  3U8M A;  3P50 A;  2BR7 A;  5HCJ A;  4ZJS A;  2BJ0 A;  1UW6 A;  2Y56 A;  4QH4 A;  2XNU A;  2Y54 A;  3UUB A;  4ALX A;  4AFT A;  4IRE A;  3ZKR A;  5BW2 A;  5FJV A;  3WTJ A;  5HEG A;  5AFL A;  3SQ9 A;  5J5H A;  5TVC A;  4A98 A;  2C9T A;  4COF A;  4NPP A;  2WZY A;  2XNT A;  4TNV A;  3WTL A;  3WTH A;  5AFM B;  5BRX A;  2BYS A;  2XQ6 A;  2W8G A;  4ZJT A;  2YMD A;  2XQ9 A;  2Y57 A;  5J5G A;  4ZK1 A;  5HCM A;  4FRR A;  4PIR A;  3JAF A;  3U8K A;  3UU8 A;  3JAE A;  4TNW A;  2XQ7 A;  4IL9 A;  3RQU A;  1UV6 A;  5BP0 A;  3TLT A;  2VL0 A;  4Z91 A;  1I9B A;  2BR8 A;  5HEO A;  3RIF A;  3TLV A;  5J0Z A;  2XQ8 A;  2YOE A;  5AFM A;  2PH9 A;  3SIO A;  3WTN A;  5J5I A;  4QAB A;  2BG9 B;  3T4M A;  2BG9 C;  4ILC A;  4ILA A;  4TWH A;  2ZJU A;  3GUA A;  4TWF A;  5JME A;  2XQA A;  4UM1 A;  3IGQ A;  4AFH A;  3SQ6 A;  4QH5 A;  2BYN A;  3RI5 A;  4QH1 A;  3TLW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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