2Y58A

Fragment growing induces conformational changes in acetylcholine- binding protein: a structural and thermodynamic analysis - (compound 6)
Total Genus 47
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis.
pubmed doi rcsb
source organism Aplysia californica
total genus 47
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2y58A00
4HFBA 3WTNA 3WIPA 3ZDHA 5J5GA 2X00A 2XNVA 5L4HA 2XZ5A 2YMDA 4UY2A 2BR8A 2YKSA 4ZJSA 5KZUA 5J5HA 4BFQA 2C9TA 4HFCA 4QACA 4HFHA 5IUXA 5HEGA 4FRRA 3RQWA 2BR7A 4X5TA 3UU6A 3UUBA 2YOEA 5KE4A 1UV6A 3U8MA 2XQ4A 2X00D 3U8JA 3RQUA 5TVCA 3SH1A 3TLUA 2XQAA 2XQ9A 4UM1A 5J5FA 4HFEA 4TWFA 5CO5A 3ZKRA 2WNJA 4QABA 3UU3A 4ZZCA 3IGQA 5BW2A 2BYSA 5JMEA 4BQTA 4ZJTA 4UM3S 5LXBA 2WNCA 2YN6A 4COFA 2BG9E 3PEOA 3U8LA 4WV9A 4ZZBA 2XYTA 4QH5A 3RIAA 3P50A 2XQ8A 2XQ5A 5AFHA 2W8FA 3JADA 5J0ZA 4Z90A 3TLVA 3C84A 3EI0A 3EAMA 4LMJA 2BG9B 2WZYA 3EHZA 3TLWA 5L4EA 4HFIA 4Z91A 4AFTA 2BYQA 3WTJA 4UXUA 4QAAA 5AFJA 4ILCA 2VL0A 2WNLA 5CFBA 5HCJA 4ZK4A 2Y7YA 5AFLA 2XQ7A 4IREA 2XQ3A 4HFDA 4NZBA 3RHWA 3WTHA 3SQ9A 5AFKA 3TLTA 4AFGA 3TLSA 4XHEA 5FJVA 5SYOA 3SQ6A 2ZJUA 2Y58A 2QC1B 4TNVA 5HEUA 5HCMA 5AFMB 4QH4A 2XNUA 4TWHA 3P4WA 3WTOA 4ILBA 2PH9A 4UM3P 3RI5A 2Y54A 3U8KA 3UQ7A 3SIOA 5AINA 5BP0A 2BG9A 5HEOA 2W8GA 3UU4A 3JAEA 4EZ1A 2BYNA 4TWDA 3JAFA 2XNTA 2BYRA 2UZ6A 4F8HA 4IL4A 3GUAA 3T4MA 3LSVA 3WTLA 4D01A 2XQ6A 2Y56A 4UM3A 2Y57A 3UU8A 5J5IA 4AFHA 5L47A 4ALXA 3UQ4A 3U8NA 4IL9A 5LG3A 5AFMA 5AFNA 3UU5A 5BRXA 2PGZA 2YMEA 3PMZA 4ILAA 5HEHA 4ZK1A 2BJ0A 2XYSA 3RIFA 4LMLA 3C79A 4HQPA 4TNWA 4A98A 3ZDGA 4PIRA 2XZ6A 4A97A 4NPPA 2WN9A 2BYPA 5HEJA 1UW6A 3WTKA 3WTIA 1I9BA 1UX2A 2ZJVA 4ZRUA 4LMKA 3WTMA 2BG9C 4QH1A 4DBMA 4ZR6A 4XK9A 4B5DA
chains in the Genus database with same CATH superfamily
4HFBA 3WTNA 3WIPA 3ZDHA 5J5GA 2X00A 2XNVA 5L4HA 2XZ5A 2YMDA 4UY2A 2BR8A 2YKSA 4ZJSA 5KZUA 5J5HA 4BFQA 2C9TA 4HFCA 4QACA 4HFHA 5IUXA 5HEGA 4FRRA 3RQWA 2BR7A 4X5TA 3UU6A 3UUBA 2YOEA 5KE4A 1UV6A 3U8MA 2XQ4A 2X00D 3U8JA 3RQUA 5TVCA 3SH1A 3TLUA 2XQAA 2XQ9A 4UM1A 5J5FA 4HFEA 4TWFA 5CO5A 3ZKRA 2WNJA 4QABA 3UU3A 4ZZCA 3IGQA 5BW2A 2BYSA 5JMEA 4BQTA 4ZJTA 4UM3S 5LXBA 2WNCA 2YN6A 4COFA 2BG9E 3PEOA 3U8LA 4WV9A 4ZZBA 2XYTA 4QH5A 3RIAA 3P50A 2XQ8A 2XQ5A 5AFHA 2W8FA 3JADA 5J0ZA 4Z90A 3TLVA 3C84A 3EI0A 3EAMA 4LMJA 2BG9B 2WZYA 3EHZA 3TLWA 5L4EA 4HFIA 4Z91A 4AFTA 2BYQA 3WTJA 4UXUA 4QAAA 5AFJA 4ILCA 2VL0A 2WNLA 5CFBA 5HCJA 4ZK4A 2Y7YA 5AFLA 2XQ7A 4IREA 2XQ3A 4HFDA 4NZBA 3RHWA 3WTHA 3SQ9A 5AFKA 3TLTA 4AFGA 3TLSA 4XHEA 5FJVA 5SYOA 3SQ6A 2ZJUA 2Y58A 2QC1B 4TNVA 5HEUA 5HCMA 5AFMB 4QH4A 2XNUA 4TWHA 3P4WA 3WTOA 4ILBA 2PH9A 4UM3P 3RI5A 2Y54A 3U8KA 3UQ7A 3SIOA 5AINA 5BP0A 2BG9A 5HEOA 2W8GA 3UU4A 3JAEA 4EZ1A 2BYNA 4TWDA 3JAFA 2XNTA 2BYRA 2UZ6A 4F8HA 4IL4A 3GUAA 3T4MA 3LSVA 3WTLA 4D01A 2XQ6A 2Y56A 4UM3A 2Y57A 3UU8A 5J5IA 4AFHA 5L47A 4ALXA 3UQ4A 3U8NA 4IL9A 5LG3A 5AFMA 5AFNA 3UU5A 5BRXA 2PGZA 2YMEA 3PMZA 4ILAA 5HEHA 4ZK1A 2BJ0A 2XYSA 3RIFA 4LMLA 3C79A 4HQPA 4TNWA 4A98A 3ZDGA 4PIRA 2XZ6A 4A97A 4NPPA 2WN9A 2BYPA 5HEJA 1UW6A 3WTKA 3WTIA 1I9BA 1UX2A 2ZJVA 4ZRUA 4LMKA 3WTMA 2BG9C 4QH1A 4DBMA 4ZR6A 4XK9A 4B5DA
chains in the Genus database with same CATH topology
4HFBA 3WTNA 3WIPA 3ZDHA 5J5GA 2X00A 2XNVA 5L4HA 2XZ5A 2YMDA 4UY2A 2BR8A 2YKSA 4ZJSA 5KZUA 5J5HA 4BFQA 2C9TA 4HFCA 4QACA 4HFHA 5IUXA 5HEGA 4FRRA 3RQWA 2BR7A 4X5TA 3UU6A 3UUBA 2YOEA 5KE4A 1UV6A 3U8MA 2XQ4A 2X00D 3U8JA 3RQUA 5TVCA 3SH1A 3TLUA 2XQAA 2XQ9A 4UM1A 5J5FA 4HFEA 4TWFA 5CO5A 3ZKRA 2WNJA 4QABA 3UU3A 4ZZCA 3IGQA 5BW2A 2BYSA 5JMEA 4BQTA 4ZJTA 4UM3S 5LXBA 2WNCA 2YN6A 4COFA 2BG9E 3PEOA 3U8LA 4WV9A 4ZZBA 2XYTA 4QH5A 3RIAA 3P50A 2XQ8A 2XQ5A 5AFHA 2W8FA 3JADA 5J0ZA 4Z90A 3TLVA 3C84A 3EI0A 3EAMA 4LMJA 2BG9B 2WZYA 3EHZA 3TLWA 5L4EA 4HFIA 4Z91A 4AFTA 2BYQA 3WTJA 4UXUA 4QAAA 5AFJA 4ILCA 2VL0A 2WNLA 5CFBA 5HCJA 4ZK4A 2Y7YA 5AFLA 2XQ7A 4IREA 2XQ3A 4HFDA 4NZBA 3RHWA 3WTHA 3SQ9A 5AFKA 3TLTA 4AFGA 3TLSA 4XHEA 5FJVA 5SYOA 3SQ6A 2ZJUA 2Y58A 2QC1B 4TNVA 5HEUA 5HCMA 5AFMB 4QH4A 2XNUA 4TWHA 3P4WA 3WTOA 4ILBA 2PH9A 4UM3P 3RI5A 2Y54A 3U8KA 3UQ7A 3SIOA 5AINA 5BP0A 2BG9A 5HEOA 2W8GA 3UU4A 3JAEA 4EZ1A 2BYNA 4TWDA 3JAFA 2XNTA 2BYRA 2UZ6A 4F8HA 4IL4A 3GUAA 3T4MA 3LSVA 3WTLA 4D01A 2XQ6A 2Y56A 4UM3A 2Y57A 3UU8A 5J5IA 4AFHA 5L47A 4ALXA 3UQ4A 3U8NA 4IL9A 5LG3A 5AFMA 5AFNA 3UU5A 5BRXA 2PGZA 2YMEA 3PMZA 4ILAA 5HEHA 4ZK1A 2BJ0A 2XYSA 3RIFA 4LMLA 3C79A 4HQPA 4TNWA 4A98A 3ZDGA 4PIRA 2XZ6A 4A97A 4NPPA 2WN9A 2BYPA 5HEJA 1UW6A 3WTKA 3WTIA 1I9BA 1UX2A 2ZJVA 4ZRUA 4LMKA 3WTMA 2BG9C 4QH1A 4DBMA 4ZR6A 4XK9A 4B5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFB A;  3WTN A;  3WIP A;  3ZDH A;  5J5G A;  2X00 A;  2XNV A;  5L4H A;  2XZ5 A;  2YMD A;  4UY2 A;  2BR8 A;  2YKS A;  4ZJS A;  5KZU A;  5J5H A;  4BFQ A;  2C9T A;  4HFC A;  4QAC A;  4HFH A;  5IUX A;  5HEG A;  4FRR A;  3RQW A;  2BR7 A;  4X5T A;  3UU6 A;  3UUB A;  2YOE A;  5KE4 A;  1UV6 A;  3U8M A;  2XQ4 A;  2X00 D;  3U8J A;  3RQU A;  5TVC A;  3SH1 A;  3TLU A;  2XQA A;  2XQ9 A;  4UM1 A;  5J5F A;  4HFE A;  4TWF A;  5CO5 A;  3ZKR A;  2WNJ A;  4QAB A;  3UU3 A;  4ZZC A;  3IGQ A;  5BW2 A;  2BYS A;  5JME A;  4BQT A;  4ZJT A;  4UM3 S;  5LXB A;  2WNC A;  2YN6 A;  4COF A;  2BG9 E;  3PEO A;  3U8L A;  4WV9 A;  4ZZB A;  2XYT A;  4QH5 A;  3RIA A;  3P50 A;  2XQ8 A;  2XQ5 A;  5AFH A;  2W8F A;  3JAD A;  5J0Z A;  4Z90 A;  3TLV A;  3C84 A;  3EI0 A;  3EAM A;  4LMJ A;  2BG9 B;  2WZY A;  3EHZ A;  3TLW A;  5L4E A;  4HFI A;  4Z91 A;  4AFT A;  2BYQ A;  3WTJ A;  4UXU A;  4QAA A;  5AFJ A;  4ILC A;  2VL0 A;  2WNL A;  5CFB A;  5HCJ A;  4ZK4 A;  2Y7Y A;  5AFL A;  2XQ7 A;  4IRE A;  2XQ3 A;  4HFD A;  4NZB A;  3RHW A;  3WTH A;  3SQ9 A;  5AFK A;  3TLT A;  4AFG A;  3TLS A;  4XHE A;  5FJV A;  5SYO A;  3SQ6 A;  2ZJU A;  2Y58 A;  2QC1 B;  4TNV A;  5HEU A;  5HCM A;  5AFM B;  4QH4 A;  2XNU A;  4TWH A;  3P4W A;  3WTO A;  4ILB A;  2PH9 A;  4UM3 P;  3RI5 A;  2Y54 A;  3U8K A;  3UQ7 A;  3SIO A;  5AIN A;  5BP0 A;  2BG9 A;  5HEO A;  2W8G A;  3UU4 A;  3JAE A;  4EZ1 A;  2BYN A;  4TWD A;  3JAF A;  2XNT A;  2BYR A;  2UZ6 A;  4F8H A;  4IL4 A;  3GUA A;  3T4M A;  3LSV A;  3WTL A;  4D01 A;  2XQ6 A;  2Y56 A;  4UM3 A;  2Y57 A;  3UU8 A;  5J5I A;  4AFH A;  5L47 A;  4ALX A;  3UQ4 A;  3U8N A;  4IL9 A;  5LG3 A;  5AFM A;  5AFN A;  3UU5 A;  5BRX A;  2PGZ A;  2YME A;  3PMZ A;  4ILA A;  5HEH A;  4ZK1 A;  2BJ0 A;  2XYS A;  3RIF A;  4LML A;  3C79 A;  4HQP A;  4TNW A;  4A98 A;  3ZDG A;  4PIR A;  2XZ6 A;  4A97 A;  4NPP A;  2WN9 A;  2BYP A;  5HEJ A;  1UW6 A;  3WTK A;  3WTI A;  1I9B A;  1UX2 A;  2ZJV A;  4ZRU A;  4LMK A;  3WTM A;  2BG9 C;  4QH1 A;  4DBM A;  4ZR6 A;  4XK9 A;  4B5D A; 
#chains in the Genus database with same CATH topology
 4HFB A;  3WTN A;  3WIP A;  3ZDH A;  5J5G A;  2X00 A;  2XNV A;  5L4H A;  2XZ5 A;  2YMD A;  4UY2 A;  2BR8 A;  2YKS A;  4ZJS A;  5KZU A;  5J5H A;  4BFQ A;  2C9T A;  4HFC A;  4QAC A;  4HFH A;  5IUX A;  5HEG A;  4FRR A;  3RQW A;  2BR7 A;  4X5T A;  3UU6 A;  3UUB A;  2YOE A;  5KE4 A;  1UV6 A;  3U8M A;  2XQ4 A;  2X00 D;  3U8J A;  3RQU A;  5TVC A;  3SH1 A;  3TLU A;  2XQA A;  2XQ9 A;  4UM1 A;  5J5F A;  4HFE A;  4TWF A;  5CO5 A;  3ZKR A;  2WNJ A;  4QAB A;  3UU3 A;  4ZZC A;  3IGQ A;  5BW2 A;  2BYS A;  5JME A;  4BQT A;  4ZJT A;  4UM3 S;  5LXB A;  2WNC A;  2YN6 A;  4COF A;  2BG9 E;  3PEO A;  3U8L A;  4WV9 A;  4ZZB A;  2XYT A;  4QH5 A;  3RIA A;  3P50 A;  2XQ8 A;  2XQ5 A;  5AFH A;  2W8F A;  3JAD A;  5J0Z A;  4Z90 A;  3TLV A;  3C84 A;  3EI0 A;  3EAM A;  4LMJ A;  2BG9 B;  2WZY A;  3EHZ A;  3TLW A;  5L4E A;  4HFI A;  4Z91 A;  4AFT A;  2BYQ A;  3WTJ A;  4UXU A;  4QAA A;  5AFJ A;  4ILC A;  2VL0 A;  2WNL A;  5CFB A;  5HCJ A;  4ZK4 A;  2Y7Y A;  5AFL A;  2XQ7 A;  4IRE A;  2XQ3 A;  4HFD A;  4NZB A;  3RHW A;  3WTH A;  3SQ9 A;  5AFK A;  3TLT A;  4AFG A;  3TLS A;  4XHE A;  5FJV A;  5SYO A;  3SQ6 A;  2ZJU A;  2Y58 A;  2QC1 B;  4TNV A;  5HEU A;  5HCM A;  5AFM B;  4QH4 A;  2XNU A;  4TWH A;  3P4W A;  3WTO A;  4ILB A;  2PH9 A;  4UM3 P;  3RI5 A;  2Y54 A;  3U8K A;  3UQ7 A;  3SIO A;  5AIN A;  5BP0 A;  2BG9 A;  5HEO A;  2W8G A;  3UU4 A;  3JAE A;  4EZ1 A;  2BYN A;  4TWD A;  3JAF A;  2XNT A;  2BYR A;  2UZ6 A;  4F8H A;  4IL4 A;  3GUA A;  3T4M A;  3LSV A;  3WTL A;  4D01 A;  2XQ6 A;  2Y56 A;  4UM3 A;  2Y57 A;  3UU8 A;  5J5I A;  4AFH A;  5L47 A;  4ALX A;  3UQ4 A;  3U8N A;  4IL9 A;  5LG3 A;  5AFM A;  5AFN A;  3UU5 A;  5BRX A;  2PGZ A;  2YME A;  3PMZ A;  4ILA A;  5HEH A;  4ZK1 A;  2BJ0 A;  2XYS A;  3RIF A;  4LML A;  3C79 A;  4HQP A;  4TNW A;  4A98 A;  3ZDG A;  4PIR A;  2XZ6 A;  4A97 A;  4NPP A;  2WN9 A;  2BYP A;  5HEJ A;  1UW6 A;  3WTK A;  3WTI A;  1I9B A;  1UX2 A;  2ZJV A;  4ZRU A;  4LMK A;  3WTM A;  2BG9 C;  4QH1 A;  4DBM A;  4ZR6 A;  4XK9 A;  4B5D A; 
#chains in the Genus database with same CATH homology
 4HFB A;  3WTN A;  3WIP A;  3ZDH A;  5J5G A;  2X00 A;  2XNV A;  5L4H A;  2XZ5 A;  2YMD A;  4UY2 A;  2BR8 A;  2YKS A;  4ZJS A;  5KZU A;  5J5H A;  4BFQ A;  2C9T A;  4HFC A;  4QAC A;  4HFH A;  5IUX A;  5HEG A;  4FRR A;  3RQW A;  2BR7 A;  4X5T A;  3UU6 A;  3UUB A;  2YOE A;  5KE4 A;  1UV6 A;  3U8M A;  2XQ4 A;  2X00 D;  3U8J A;  3RQU A;  5TVC A;  3SH1 A;  3TLU A;  2XQA A;  2XQ9 A;  4UM1 A;  5J5F A;  4HFE A;  4TWF A;  5CO5 A;  3ZKR A;  2WNJ A;  4QAB A;  3UU3 A;  4ZZC A;  3IGQ A;  5BW2 A;  2BYS A;  5JME A;  4BQT A;  4ZJT A;  4UM3 S;  5LXB A;  2WNC A;  2YN6 A;  4COF A;  2BG9 E;  3PEO A;  3U8L A;  4WV9 A;  4ZZB A;  2XYT A;  4QH5 A;  3RIA A;  3P50 A;  2XQ8 A;  2XQ5 A;  5AFH A;  2W8F A;  3JAD A;  5J0Z A;  4Z90 A;  3TLV A;  3C84 A;  3EI0 A;  3EAM A;  4LMJ A;  2BG9 B;  2WZY A;  3EHZ A;  3TLW A;  5L4E A;  4HFI A;  4Z91 A;  4AFT A;  2BYQ A;  3WTJ A;  4UXU A;  4QAA A;  5AFJ A;  4ILC A;  2VL0 A;  2WNL A;  5CFB A;  5HCJ A;  4ZK4 A;  2Y7Y A;  5AFL A;  2XQ7 A;  4IRE A;  2XQ3 A;  4HFD A;  4NZB A;  3RHW A;  3WTH A;  3SQ9 A;  5AFK A;  3TLT A;  4AFG A;  3TLS A;  4XHE A;  5FJV A;  5SYO A;  3SQ6 A;  2ZJU A;  2Y58 A;  2QC1 B;  4TNV A;  5HEU A;  5HCM A;  5AFM B;  4QH4 A;  2XNU A;  4TWH A;  3P4W A;  3WTO A;  4ILB A;  2PH9 A;  4UM3 P;  3RI5 A;  2Y54 A;  3U8K A;  3UQ7 A;  3SIO A;  5AIN A;  5BP0 A;  2BG9 A;  5HEO A;  2W8G A;  3UU4 A;  3JAE A;  4EZ1 A;  2BYN A;  4TWD A;  3JAF A;  2XNT A;  2BYR A;  2UZ6 A;  4F8H A;  4IL4 A;  3GUA A;  3T4M A;  3LSV A;  3WTL A;  4D01 A;  2XQ6 A;  2Y56 A;  4UM3 A;  2Y57 A;  3UU8 A;  5J5I A;  4AFH A;  5L47 A;  4ALX A;  3UQ4 A;  3U8N A;  4IL9 A;  5LG3 A;  5AFM A;  5AFN A;  3UU5 A;  5BRX A;  2PGZ A;  2YME A;  3PMZ A;  4ILA A;  5HEH A;  4ZK1 A;  2BJ0 A;  2XYS A;  3RIF A;  4LML A;  3C79 A;  4HQP A;  4TNW A;  4A98 A;  3ZDG A;  4PIR A;  2XZ6 A;  4A97 A;  4NPP A;  2WN9 A;  2BYP A;  5HEJ A;  1UW6 A;  3WTK A;  3WTI A;  1I9B A;  1UX2 A;  2ZJV A;  4ZRU A;  4LMK A;  3WTM A;  2BG9 C;  4QH1 A;  4DBM A;  4ZR6 A;  4XK9 A;  4B5D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...