4DBMA

Aplysia californica-achbp in complex with triazole 18
Total Genus 51
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
211
structure length
211
Chain Sequence
DDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Acetylcholine-binding protein
source organism Aplysia californica
publication title Generation of candidate ligands for nicotinic acetylcholine receptors via in situ click chemistry with a soluble acetylcholine binding protein template.
pubmed doi rcsb
molecule keywords Soluble acetylcholine receptor
total genus 51
structure length 211
sequence length 211
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2012-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4dbmA00
4HFEA 4EZ1A 5AFLA 4UM3P 2YMDA 4WV9A 5J5FA 5LG3A 4QACA 2C9TA 5CFBA 3LSVA 2BR7A 4LMJA 4HFCA 5J5IA 3JADA 5BP0A 4DBMA 4ILCA 5AFKA 3U8LA 2WZYA 2XQ5A 2XQ3A 2Y56A 3UU5A 5JMEA 5KZUA 5L4EA 4ZR6A 2W8FA 4X5TA 4QH4A 2BJ0A 5HEHA 2BR8A 5CO5A 4UXUA 4XK9A 4ZZBA 5AFHA 2ZJUA 5HEUA 4LMLA 4IL4A 3SIOA 5J0ZA 3WTJA 4FRRA 4A97A 5TVCA 4LMKA 3ZDHA 3UQ4A 3WTNA 3U8MA 3UU3A 5J5GA 3WTKA 3ZDGA 2WNJA 2YMEA 5HEOA 4TWDA 5AFNA 2ZJVA 3SH1A 5LXBA 3RQWA 2XQ4A 5HCJA 4PIRA 4COFA 3RIAA 3EAMA 3U8KA 3PEOA 2XYSA 3P4WA 1UV6A 5AFJA 4Z91A 3P50A 3UU8A 4ALXA 4HFIA 4IL9A 3RI5A 4HFDA 3RHWA 4ZK1A 1UW6A 2UZ6A 4UM3A 2BYPA 3SQ6A 2Y57A 4XHEA 4D01A 4TNVA 4ZRUA 2XQ9A 4ZJTA 2XQ7A 3IGQA 3TLSA 4BQTA 4AFGA 4HFBA 5IUXA 2XQ8A 2Y58A 2BG9B 2XQAA 4UY2A 3WTHA 3UUBA 3C84A 3WTOA 2WNCA 4IREA 4TWFA 4ZJSA 2XNUA 3TLVA 4TNWA 4HQPA 2PGZA 2WNLA 5HEGA 4QABA 3WTLA 2BG9C 2XYTA 2YKSA 2BG9A 3UU6A 3SQ9A 4ILAA 3U8NA 3ZKRA 2BG9E 3WIPA 2Y54A 5KE4A 2BYSA 4TWHA 5L4HA 5AFMB 5BRXA 4QAAA 5J5HA 3PMZA 3T4MA 4AFTA 5AFMA 3EI0A 3TLUA 2XNVA 2Y7YA 4Z90A 4A98A 4F8HA 4QH1A 3UQ7A 3RIFA 2WN9A 2X00A 2XNTA 5L47A 3TLTA 3WTMA 4NPPA 5BW2A 5AINA 1UX2A 4ZZCA 1I9BA 2XZ6A 2YN6A 5HCMA 3UU4A 3WTIA 4BFQA 4B5DA 3EHZA 4AFHA 5HEJA 3GUAA 5SYOA 2W8GA 2X00D 2XQ6A 2BYQA 3JAEA 4HFHA 5FJVA 4ILBA 4ZK4A 4NZBA 3TLWA 2XZ5A 2PH9A 2BYNA 4QH5A 2VL0A 4UM1A 2BYRA 3U8JA 2YOEA 3C79A 3JAFA 4UM3S 2QC1B 3RQUA
chains in the Genus database with same CATH superfamily
4HFEA 4EZ1A 5AFLA 4UM3P 2YMDA 4WV9A 5J5FA 5LG3A 4QACA 2C9TA 5CFBA 3LSVA 2BR7A 4LMJA 4HFCA 5J5IA 3JADA 5BP0A 4DBMA 4ILCA 5AFKA 3U8LA 2WZYA 2XQ5A 2XQ3A 2Y56A 3UU5A 5JMEA 5KZUA 5L4EA 4ZR6A 2W8FA 4X5TA 4QH4A 2BJ0A 5HEHA 2BR8A 5CO5A 4UXUA 4XK9A 4ZZBA 5AFHA 2ZJUA 5HEUA 4LMLA 4IL4A 3SIOA 5J0ZA 3WTJA 4FRRA 4A97A 5TVCA 4LMKA 3ZDHA 3UQ4A 3WTNA 3U8MA 3UU3A 5J5GA 3WTKA 3ZDGA 2WNJA 2YMEA 5HEOA 4TWDA 5AFNA 2ZJVA 3SH1A 5LXBA 3RQWA 2XQ4A 5HCJA 4PIRA 4COFA 3RIAA 3EAMA 3U8KA 3PEOA 2XYSA 3P4WA 1UV6A 5AFJA 4Z91A 3P50A 3UU8A 4ALXA 4HFIA 4IL9A 3RI5A 4HFDA 3RHWA 4ZK1A 1UW6A 2UZ6A 4UM3A 2BYPA 3SQ6A 2Y57A 4XHEA 4D01A 4TNVA 4ZRUA 2XQ9A 4ZJTA 2XQ7A 3IGQA 3TLSA 4BQTA 4AFGA 4HFBA 5IUXA 2XQ8A 2Y58A 2BG9B 2XQAA 4UY2A 3WTHA 3UUBA 3C84A 3WTOA 2WNCA 4IREA 4TWFA 4ZJSA 2XNUA 3TLVA 4TNWA 4HQPA 2PGZA 2WNLA 5HEGA 4QABA 3WTLA 2BG9C 2XYTA 2YKSA 2BG9A 3UU6A 3SQ9A 4ILAA 3U8NA 3ZKRA 2BG9E 3WIPA 2Y54A 5KE4A 2BYSA 4TWHA 5L4HA 5AFMB 5BRXA 4QAAA 5J5HA 3PMZA 3T4MA 4AFTA 5AFMA 3EI0A 3TLUA 2XNVA 2Y7YA 4Z90A 4A98A 4F8HA 4QH1A 3UQ7A 3RIFA 2WN9A 2X00A 2XNTA 5L47A 3TLTA 3WTMA 4NPPA 5BW2A 5AINA 1UX2A 4ZZCA 1I9BA 2XZ6A 2YN6A 5HCMA 3UU4A 3WTIA 4BFQA 4B5DA 3EHZA 4AFHA 5HEJA 3GUAA 5SYOA 2W8GA 2X00D 2XQ6A 2BYQA 3JAEA 4HFHA 5FJVA 4ILBA 4ZK4A 4NZBA 3TLWA 2XZ5A 2PH9A 2BYNA 4QH5A 2VL0A 4UM1A 2BYRA 3U8JA 2YOEA 3C79A 3JAFA 4UM3S 2QC1B 3RQUA
chains in the Genus database with same CATH topology
4HFEA 4EZ1A 5AFLA 4UM3P 2YMDA 4WV9A 5J5FA 5LG3A 4QACA 2C9TA 5CFBA 3LSVA 2BR7A 4LMJA 4HFCA 5J5IA 3JADA 5BP0A 4DBMA 4ILCA 5AFKA 3U8LA 2WZYA 2XQ5A 2XQ3A 2Y56A 3UU5A 5JMEA 5KZUA 5L4EA 4ZR6A 2W8FA 4X5TA 4QH4A 2BJ0A 5HEHA 2BR8A 5CO5A 4UXUA 4XK9A 4ZZBA 5AFHA 2ZJUA 5HEUA 4LMLA 4IL4A 3SIOA 5J0ZA 3WTJA 4FRRA 4A97A 5TVCA 4LMKA 3ZDHA 3UQ4A 3WTNA 3U8MA 3UU3A 5J5GA 3WTKA 3ZDGA 2WNJA 2YMEA 5HEOA 4TWDA 5AFNA 2ZJVA 3SH1A 5LXBA 3RQWA 2XQ4A 5HCJA 4PIRA 4COFA 3RIAA 3EAMA 3U8KA 3PEOA 2XYSA 3P4WA 1UV6A 5AFJA 4Z91A 3P50A 3UU8A 4ALXA 4HFIA 4IL9A 3RI5A 4HFDA 3RHWA 4ZK1A 1UW6A 2UZ6A 4UM3A 2BYPA 3SQ6A 2Y57A 4XHEA 4D01A 4TNVA 4ZRUA 2XQ9A 4ZJTA 2XQ7A 3IGQA 3TLSA 4BQTA 4AFGA 4HFBA 5IUXA 2XQ8A 2Y58A 2BG9B 2XQAA 4UY2A 3WTHA 3UUBA 3C84A 3WTOA 2WNCA 4IREA 4TWFA 4ZJSA 2XNUA 3TLVA 4TNWA 4HQPA 2PGZA 2WNLA 5HEGA 4QABA 3WTLA 2BG9C 2XYTA 2YKSA 2BG9A 3UU6A 3SQ9A 4ILAA 3U8NA 3ZKRA 2BG9E 3WIPA 2Y54A 5KE4A 2BYSA 4TWHA 5L4HA 5AFMB 5BRXA 4QAAA 5J5HA 3PMZA 3T4MA 4AFTA 5AFMA 3EI0A 3TLUA 2XNVA 2Y7YA 4Z90A 4A98A 4F8HA 4QH1A 3UQ7A 3RIFA 2WN9A 2X00A 2XNTA 5L47A 3TLTA 3WTMA 4NPPA 5BW2A 5AINA 1UX2A 4ZZCA 1I9BA 2XZ6A 2YN6A 5HCMA 3UU4A 3WTIA 4BFQA 4B5DA 3EHZA 4AFHA 5HEJA 3GUAA 5SYOA 2W8GA 2X00D 2XQ6A 2BYQA 3JAEA 4HFHA 5FJVA 4ILBA 4ZK4A 4NZBA 3TLWA 2XZ5A 2PH9A 2BYNA 4QH5A 2VL0A 4UM1A 2BYRA 3U8JA 2YOEA 3C79A 3JAFA 4UM3S 2QC1B 3RQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFE A;  4EZ1 A;  5AFL A;  4UM3 P;  2YMD A;  4WV9 A;  5J5F A;  5LG3 A;  4QAC A;  2C9T A;  5CFB A;  3LSV A;  2BR7 A;  4LMJ A;  4HFC A;  5J5I A;  3JAD A;  5BP0 A;  4DBM A;  4ILC A;  5AFK A;  3U8L A;  2WZY A;  2XQ5 A;  2XQ3 A;  2Y56 A;  3UU5 A;  5JME A;  5KZU A;  5L4E A;  4ZR6 A;  2W8F A;  4X5T A;  4QH4 A;  2BJ0 A;  5HEH A;  2BR8 A;  5CO5 A;  4UXU A;  4XK9 A;  4ZZB A;  5AFH A;  2ZJU A;  5HEU A;  4LML A;  4IL4 A;  3SIO A;  5J0Z A;  3WTJ A;  4FRR A;  4A97 A;  5TVC A;  4LMK A;  3ZDH A;  3UQ4 A;  3WTN A;  3U8M A;  3UU3 A;  5J5G A;  3WTK A;  3ZDG A;  2WNJ A;  2YME A;  5HEO A;  4TWD A;  5AFN A;  2ZJV A;  3SH1 A;  5LXB A;  3RQW A;  2XQ4 A;  5HCJ A;  4PIR A;  4COF A;  3RIA A;  3EAM A;  3U8K A;  3PEO A;  2XYS A;  3P4W A;  1UV6 A;  5AFJ A;  4Z91 A;  3P50 A;  3UU8 A;  4ALX A;  4HFI A;  4IL9 A;  3RI5 A;  4HFD A;  3RHW A;  4ZK1 A;  1UW6 A;  2UZ6 A;  4UM3 A;  2BYP A;  3SQ6 A;  2Y57 A;  4XHE A;  4D01 A;  4TNV A;  4ZRU A;  2XQ9 A;  4ZJT A;  2XQ7 A;  3IGQ A;  3TLS A;  4BQT A;  4AFG A;  4HFB A;  5IUX A;  2XQ8 A;  2Y58 A;  2BG9 B;  2XQA A;  4UY2 A;  3WTH A;  3UUB A;  3C84 A;  3WTO A;  2WNC A;  4IRE A;  4TWF A;  4ZJS A;  2XNU A;  3TLV A;  4TNW A;  4HQP A;  2PGZ A;  2WNL A;  5HEG A;  4QAB A;  3WTL A;  2BG9 C;  2XYT A;  2YKS A;  2BG9 A;  3UU6 A;  3SQ9 A;  4ILA A;  3U8N A;  3ZKR A;  2BG9 E;  3WIP A;  2Y54 A;  5KE4 A;  2BYS A;  4TWH A;  5L4H A;  5AFM B;  5BRX A;  4QAA A;  5J5H A;  3PMZ A;  3T4M A;  4AFT A;  5AFM A;  3EI0 A;  3TLU A;  2XNV A;  2Y7Y A;  4Z90 A;  4A98 A;  4F8H A;  4QH1 A;  3UQ7 A;  3RIF A;  2WN9 A;  2X00 A;  2XNT A;  5L47 A;  3TLT A;  3WTM A;  4NPP A;  5BW2 A;  5AIN A;  1UX2 A;  4ZZC A;  1I9B A;  2XZ6 A;  2YN6 A;  5HCM A;  3UU4 A;  3WTI A;  4BFQ A;  4B5D A;  3EHZ A;  4AFH A;  5HEJ A;  3GUA A;  5SYO A;  2W8G A;  2X00 D;  2XQ6 A;  2BYQ A;  3JAE A;  4HFH A;  5FJV A;  4ILB A;  4ZK4 A;  4NZB A;  3TLW A;  2XZ5 A;  2PH9 A;  2BYN A;  4QH5 A;  2VL0 A;  4UM1 A;  2BYR A;  3U8J A;  2YOE A;  3C79 A;  3JAF A;  4UM3 S;  2QC1 B;  3RQU A; 
#chains in the Genus database with same CATH topology
 4HFE A;  4EZ1 A;  5AFL A;  4UM3 P;  2YMD A;  4WV9 A;  5J5F A;  5LG3 A;  4QAC A;  2C9T A;  5CFB A;  3LSV A;  2BR7 A;  4LMJ A;  4HFC A;  5J5I A;  3JAD A;  5BP0 A;  4DBM A;  4ILC A;  5AFK A;  3U8L A;  2WZY A;  2XQ5 A;  2XQ3 A;  2Y56 A;  3UU5 A;  5JME A;  5KZU A;  5L4E A;  4ZR6 A;  2W8F A;  4X5T A;  4QH4 A;  2BJ0 A;  5HEH A;  2BR8 A;  5CO5 A;  4UXU A;  4XK9 A;  4ZZB A;  5AFH A;  2ZJU A;  5HEU A;  4LML A;  4IL4 A;  3SIO A;  5J0Z A;  3WTJ A;  4FRR A;  4A97 A;  5TVC A;  4LMK A;  3ZDH A;  3UQ4 A;  3WTN A;  3U8M A;  3UU3 A;  5J5G A;  3WTK A;  3ZDG A;  2WNJ A;  2YME A;  5HEO A;  4TWD A;  5AFN A;  2ZJV A;  3SH1 A;  5LXB A;  3RQW A;  2XQ4 A;  5HCJ A;  4PIR A;  4COF A;  3RIA A;  3EAM A;  3U8K A;  3PEO A;  2XYS A;  3P4W A;  1UV6 A;  5AFJ A;  4Z91 A;  3P50 A;  3UU8 A;  4ALX A;  4HFI A;  4IL9 A;  3RI5 A;  4HFD A;  3RHW A;  4ZK1 A;  1UW6 A;  2UZ6 A;  4UM3 A;  2BYP A;  3SQ6 A;  2Y57 A;  4XHE A;  4D01 A;  4TNV A;  4ZRU A;  2XQ9 A;  4ZJT A;  2XQ7 A;  3IGQ A;  3TLS A;  4BQT A;  4AFG A;  4HFB A;  5IUX A;  2XQ8 A;  2Y58 A;  2BG9 B;  2XQA A;  4UY2 A;  3WTH A;  3UUB A;  3C84 A;  3WTO A;  2WNC A;  4IRE A;  4TWF A;  4ZJS A;  2XNU A;  3TLV A;  4TNW A;  4HQP A;  2PGZ A;  2WNL A;  5HEG A;  4QAB A;  3WTL A;  2BG9 C;  2XYT A;  2YKS A;  2BG9 A;  3UU6 A;  3SQ9 A;  4ILA A;  3U8N A;  3ZKR A;  2BG9 E;  3WIP A;  2Y54 A;  5KE4 A;  2BYS A;  4TWH A;  5L4H A;  5AFM B;  5BRX A;  4QAA A;  5J5H A;  3PMZ A;  3T4M A;  4AFT A;  5AFM A;  3EI0 A;  3TLU A;  2XNV A;  2Y7Y A;  4Z90 A;  4A98 A;  4F8H A;  4QH1 A;  3UQ7 A;  3RIF A;  2WN9 A;  2X00 A;  2XNT A;  5L47 A;  3TLT A;  3WTM A;  4NPP A;  5BW2 A;  5AIN A;  1UX2 A;  4ZZC A;  1I9B A;  2XZ6 A;  2YN6 A;  5HCM A;  3UU4 A;  3WTI A;  4BFQ A;  4B5D A;  3EHZ A;  4AFH A;  5HEJ A;  3GUA A;  5SYO A;  2W8G A;  2X00 D;  2XQ6 A;  2BYQ A;  3JAE A;  4HFH A;  5FJV A;  4ILB A;  4ZK4 A;  4NZB A;  3TLW A;  2XZ5 A;  2PH9 A;  2BYN A;  4QH5 A;  2VL0 A;  4UM1 A;  2BYR A;  3U8J A;  2YOE A;  3C79 A;  3JAF A;  4UM3 S;  2QC1 B;  3RQU A; 
#chains in the Genus database with same CATH homology
 4HFE A;  4EZ1 A;  5AFL A;  4UM3 P;  2YMD A;  4WV9 A;  5J5F A;  5LG3 A;  4QAC A;  2C9T A;  5CFB A;  3LSV A;  2BR7 A;  4LMJ A;  4HFC A;  5J5I A;  3JAD A;  5BP0 A;  4DBM A;  4ILC A;  5AFK A;  3U8L A;  2WZY A;  2XQ5 A;  2XQ3 A;  2Y56 A;  3UU5 A;  5JME A;  5KZU A;  5L4E A;  4ZR6 A;  2W8F A;  4X5T A;  4QH4 A;  2BJ0 A;  5HEH A;  2BR8 A;  5CO5 A;  4UXU A;  4XK9 A;  4ZZB A;  5AFH A;  2ZJU A;  5HEU A;  4LML A;  4IL4 A;  3SIO A;  5J0Z A;  3WTJ A;  4FRR A;  4A97 A;  5TVC A;  4LMK A;  3ZDH A;  3UQ4 A;  3WTN A;  3U8M A;  3UU3 A;  5J5G A;  3WTK A;  3ZDG A;  2WNJ A;  2YME A;  5HEO A;  4TWD A;  5AFN A;  2ZJV A;  3SH1 A;  5LXB A;  3RQW A;  2XQ4 A;  5HCJ A;  4PIR A;  4COF A;  3RIA A;  3EAM A;  3U8K A;  3PEO A;  2XYS A;  3P4W A;  1UV6 A;  5AFJ A;  4Z91 A;  3P50 A;  3UU8 A;  4ALX A;  4HFI A;  4IL9 A;  3RI5 A;  4HFD A;  3RHW A;  4ZK1 A;  1UW6 A;  2UZ6 A;  4UM3 A;  2BYP A;  3SQ6 A;  2Y57 A;  4XHE A;  4D01 A;  4TNV A;  4ZRU A;  2XQ9 A;  4ZJT A;  2XQ7 A;  3IGQ A;  3TLS A;  4BQT A;  4AFG A;  4HFB A;  5IUX A;  2XQ8 A;  2Y58 A;  2BG9 B;  2XQA A;  4UY2 A;  3WTH A;  3UUB A;  3C84 A;  3WTO A;  2WNC A;  4IRE A;  4TWF A;  4ZJS A;  2XNU A;  3TLV A;  4TNW A;  4HQP A;  2PGZ A;  2WNL A;  5HEG A;  4QAB A;  3WTL A;  2BG9 C;  2XYT A;  2YKS A;  2BG9 A;  3UU6 A;  3SQ9 A;  4ILA A;  3U8N A;  3ZKR A;  2BG9 E;  3WIP A;  2Y54 A;  5KE4 A;  2BYS A;  4TWH A;  5L4H A;  5AFM B;  5BRX A;  4QAA A;  5J5H A;  3PMZ A;  3T4M A;  4AFT A;  5AFM A;  3EI0 A;  3TLU A;  2XNV A;  2Y7Y A;  4Z90 A;  4A98 A;  4F8H A;  4QH1 A;  3UQ7 A;  3RIF A;  2WN9 A;  2X00 A;  2XNT A;  5L47 A;  3TLT A;  3WTM A;  4NPP A;  5BW2 A;  5AIN A;  1UX2 A;  4ZZC A;  1I9B A;  2XZ6 A;  2YN6 A;  5HCM A;  3UU4 A;  3WTI A;  4BFQ A;  4B5D A;  3EHZ A;  4AFH A;  5HEJ A;  3GUA A;  5SYO A;  2W8G A;  2X00 D;  2XQ6 A;  2BYQ A;  3JAE A;  4HFH A;  5FJV A;  4ILB A;  4ZK4 A;  4NZB A;  3TLW A;  2XZ5 A;  2PH9 A;  2BYN A;  4QH5 A;  2VL0 A;  4UM1 A;  2BYR A;  3U8J A;  2YOE A;  3C79 A;  3JAF A;  4UM3 S;  2QC1 B;  3RQU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...