4DBMA

Aplysia californica-achbp in complex with triazole 18
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
211
structure length
211
Chain Sequence
b'DDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Generation of candidate ligands for nicotinic acetylcholine receptors via in situ click chemistry with a soluble acetylcholine binding protein template.
pubmed doi rcsb
molecule keywords Soluble acetylcholine receptor
source organism Aplysia californica
molecule tags Acetylcholine-binding protein
total genus 51
structure length 211
sequence length 211
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2012-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4dbmA00
3ZDHA 2BR7A 3U8KA 4ILAA 4UY2A 2XQ7A 4F8HA 4ZZCA 2XZ6A 2PH9A 2VL0A 4XK9A 4ZJSA 3RHWA 3UU8A 3U8JA 3TLUA 5KE4A 5HEOA 4A97A 3C79A 4TWFA 4BFQA 4UM3P 5BP0A 4A98A 5HEHA 5SYOA 1UW6A 2XNVA 4QH1A 2BYNA 5CFBA 5CO5A 3TLSA 2X00D 2BYPA 3JADA 2W8FA 2XNUA 4X5TA 3WTHA 5J5HA 3RI5A 2QC1B 2XQ8A 4WV9A 5J5FA 4ZR6A 4UM3A 5JMEA 3TLVA 3UQ4A 2WN9A 2YMEA 4ZK4A 5HEGA 4HFDA 4NPPA 3P4WA 3RQUA 4XHEA 4TWHA 5L4HA 3WTMA 5AINA 5LXBA 4AFHA 2BG9C 5HCMA 4HFIA 3RIFA 5AFNA 2XQ9A 3WIPA 3U8NA 2XQAA 4LMLA 5BRXA 5HCJA 4HFBA 5L47A 3JAFA 2YN6A 4BQTA 4HFHA 3EHZA 3TLWA 3UU4A 4LMJA 3RIAA 3PMZA 2XYTA 2YOEA 4IL9A 3SQ6A 2UZ6A 5TVCA 2W8GA 2C9TA 2ZJVA 3SIOA 2BG9B 3WTJA 4HFEA 5AFJA 4D01A 5KZUA 5J0ZA 2WNLA 4IREA 4UM1A 3P50A 4Z90A 4UM3S 5AFMB 4TNWA 3ZDGA 4ZJTA 5BW2A 3T4MA 2BG9E 5HEUA 3UU5A 2XQ5A 3WTIA 4UXUA 4FRRA 4HQPA 5J5IA 4DBMA 2YMDA 2BYSA 2Y54A 3SQ9A 2YKSA 4ILBA 4QACA 3GUAA 1I9BA 4HFCA 3WTNA 4QAAA 5LG3A 4Z91A 3WTKA 2BG9A 4ZK1A 3TLTA 2ZJUA 2WNCA 5IUXA 3ZKRA 4AFTA 3UU6A 2Y57A 2XQ6A 4QH4A 5J5GA 5AFMA 2Y58A 2BYRA 2BJ0A 4TWDA 3RQWA 5AFKA 4QH5A 5AFLA 3JAEA 4QABA 3IGQA 3SH1A 2XYSA 2PGZA 2WZYA 3WTOA 4LMKA 4AFGA 2BYQA 2Y7YA 5FJVA 5AFHA 3LSVA 3U8MA 2XQ3A 5HEJA 3WTLA 3UU3A 4ALXA 4NZBA 3EI0A 3PEOA 2XZ5A 4TNVA 5L4EA 4PIRA 4COFA 4EZ1A 2XNTA 2XQ4A 1UX2A 4B5DA 3U8LA 2BR8A 2X00A 3C84A 4ZRUA 3UQ7A 4IL4A 3UUBA 4ZZBA 2Y56A 2WNJA 3EAMA 1UV6A 4ILCA
chains in the Genus database with same CATH superfamily
3ZDHA 2BR7A 3U8KA 4ILAA 4UY2A 2XQ7A 4F8HA 4ZZCA 2XZ6A 2PH9A 2VL0A 4XK9A 4ZJSA 3RHWA 3UU8A 3U8JA 3TLUA 5KE4A 5HEOA 4A97A 3C79A 4TWFA 4BFQA 4UM3P 5BP0A 4A98A 5HEHA 5SYOA 1UW6A 2XNVA 4QH1A 2BYNA 5CFBA 5CO5A 3TLSA 2X00D 2BYPA 3JADA 2W8FA 2XNUA 4X5TA 3WTHA 5J5HA 3RI5A 2QC1B 2XQ8A 4WV9A 5J5FA 4ZR6A 4UM3A 5JMEA 3TLVA 3UQ4A 2WN9A 2YMEA 4ZK4A 5HEGA 4HFDA 4NPPA 3P4WA 3RQUA 4XHEA 4TWHA 5L4HA 3WTMA 5AINA 5LXBA 4AFHA 2BG9C 5HCMA 4HFIA 3RIFA 5AFNA 2XQ9A 3WIPA 3U8NA 2XQAA 4LMLA 5BRXA 5HCJA 4HFBA 5L47A 3JAFA 2YN6A 4BQTA 4HFHA 3EHZA 3TLWA 3UU4A 4LMJA 3RIAA 3PMZA 2XYTA 2YOEA 4IL9A 3SQ6A 2UZ6A 5TVCA 2W8GA 2C9TA 2ZJVA 3SIOA 2BG9B 3WTJA 4HFEA 5AFJA 4D01A 5KZUA 5J0ZA 2WNLA 4IREA 4UM1A 3P50A 4Z90A 4UM3S 5AFMB 4TNWA 3ZDGA 4ZJTA 5BW2A 3T4MA 2BG9E 5HEUA 3UU5A 2XQ5A 3WTIA 4UXUA 4FRRA 4HQPA 5J5IA 4DBMA 2YMDA 2BYSA 2Y54A 3SQ9A 2YKSA 4ILBA 4QACA 3GUAA 1I9BA 4HFCA 3WTNA 4QAAA 5LG3A 4Z91A 3WTKA 2BG9A 4ZK1A 3TLTA 2ZJUA 2WNCA 5IUXA 3ZKRA 4AFTA 3UU6A 2Y57A 2XQ6A 4QH4A 5J5GA 5AFMA 2Y58A 2BYRA 2BJ0A 4TWDA 3RQWA 5AFKA 4QH5A 5AFLA 3JAEA 4QABA 3IGQA 3SH1A 2XYSA 2PGZA 2WZYA 3WTOA 4LMKA 4AFGA 2BYQA 2Y7YA 5FJVA 5AFHA 3LSVA 3U8MA 2XQ3A 5HEJA 3WTLA 3UU3A 4ALXA 4NZBA 3EI0A 3PEOA 2XZ5A 4TNVA 5L4EA 4PIRA 4COFA 4EZ1A 2XNTA 2XQ4A 1UX2A 4B5DA 3U8LA 2BR8A 2X00A 3C84A 4ZRUA 3UQ7A 4IL4A 3UUBA 4ZZBA 2Y56A 2WNJA 3EAMA 1UV6A 4ILCA
chains in the Genus database with same CATH topology
3ZDHA 2BR7A 3U8KA 4ILAA 4UY2A 2XQ7A 4F8HA 4ZZCA 2XZ6A 2PH9A 2VL0A 4XK9A 4ZJSA 3RHWA 3UU8A 3U8JA 3TLUA 5KE4A 5HEOA 4A97A 3C79A 4TWFA 4BFQA 4UM3P 5BP0A 4A98A 5HEHA 5SYOA 1UW6A 2XNVA 4QH1A 2BYNA 5CFBA 5CO5A 3TLSA 2X00D 2BYPA 3JADA 2W8FA 2XNUA 4X5TA 3WTHA 5J5HA 3RI5A 2QC1B 2XQ8A 4WV9A 5J5FA 4ZR6A 4UM3A 5JMEA 3TLVA 3UQ4A 2WN9A 2YMEA 4ZK4A 5HEGA 4HFDA 4NPPA 3P4WA 3RQUA 4XHEA 4TWHA 5L4HA 3WTMA 5AINA 5LXBA 4AFHA 2BG9C 5HCMA 4HFIA 3RIFA 5AFNA 2XQ9A 3WIPA 3U8NA 2XQAA 4LMLA 5BRXA 5HCJA 4HFBA 5L47A 3JAFA 2YN6A 4BQTA 4HFHA 3EHZA 3TLWA 3UU4A 4LMJA 3RIAA 3PMZA 2XYTA 2YOEA 4IL9A 3SQ6A 2UZ6A 5TVCA 2W8GA 2C9TA 2ZJVA 3SIOA 2BG9B 3WTJA 4HFEA 5AFJA 4D01A 5KZUA 5J0ZA 2WNLA 4IREA 4UM1A 3P50A 4Z90A 4UM3S 5AFMB 4TNWA 3ZDGA 4ZJTA 5BW2A 3T4MA 2BG9E 5HEUA 3UU5A 2XQ5A 3WTIA 4UXUA 4FRRA 4HQPA 5J5IA 4DBMA 2YMDA 2BYSA 2Y54A 3SQ9A 2YKSA 4ILBA 4QACA 3GUAA 1I9BA 4HFCA 3WTNA 4QAAA 5LG3A 4Z91A 3WTKA 2BG9A 4ZK1A 3TLTA 2ZJUA 2WNCA 5IUXA 3ZKRA 4AFTA 3UU6A 2Y57A 2XQ6A 4QH4A 5J5GA 5AFMA 2Y58A 2BYRA 2BJ0A 4TWDA 3RQWA 5AFKA 4QH5A 5AFLA 3JAEA 4QABA 3IGQA 3SH1A 2XYSA 2PGZA 2WZYA 3WTOA 4LMKA 4AFGA 2BYQA 2Y7YA 5FJVA 5AFHA 3LSVA 3U8MA 2XQ3A 5HEJA 3WTLA 3UU3A 4ALXA 4NZBA 3EI0A 3PEOA 2XZ5A 4TNVA 5L4EA 4PIRA 4COFA 4EZ1A 2XNTA 2XQ4A 1UX2A 4B5DA 3U8LA 2BR8A 2X00A 3C84A 4ZRUA 3UQ7A 4IL4A 3UUBA 4ZZBA 2Y56A 2WNJA 3EAMA 1UV6A 4ILCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZDH A;  2BR7 A;  3U8K A;  4ILA A;  4UY2 A;  2XQ7 A;  4F8H A;  4ZZC A;  2XZ6 A;  2PH9 A;  2VL0 A;  4XK9 A;  4ZJS A;  3RHW A;  3UU8 A;  3U8J A;  3TLU A;  5KE4 A;  5HEO A;  4A97 A;  3C79 A;  4TWF A;  4BFQ A;  4UM3 P;  5BP0 A;  4A98 A;  5HEH A;  5SYO A;  1UW6 A;  2XNV A;  4QH1 A;  2BYN A;  5CFB A;  5CO5 A;  3TLS A;  2X00 D;  2BYP A;  3JAD A;  2W8F A;  2XNU A;  4X5T A;  3WTH A;  5J5H A;  3RI5 A;  2QC1 B;  2XQ8 A;  4WV9 A;  5J5F A;  4ZR6 A;  4UM3 A;  5JME A;  3TLV A;  3UQ4 A;  2WN9 A;  2YME A;  4ZK4 A;  5HEG A;  4HFD A;  4NPP A;  3P4W A;  3RQU A;  4XHE A;  4TWH A;  5L4H A;  3WTM A;  5AIN A;  5LXB A;  4AFH A;  2BG9 C;  5HCM A;  4HFI A;  3RIF A;  5AFN A;  2XQ9 A;  3WIP A;  3U8N A;  2XQA A;  4LML A;  5BRX A;  5HCJ A;  4HFB A;  5L47 A;  3JAF A;  2YN6 A;  4BQT A;  4HFH A;  3EHZ A;  3TLW A;  3UU4 A;  4LMJ A;  3RIA A;  3PMZ A;  2XYT A;  2YOE A;  4IL9 A;  3SQ6 A;  2UZ6 A;  5TVC A;  2W8G A;  2C9T A;  2ZJV A;  3SIO A;  2BG9 B;  3WTJ A;  4HFE A;  5AFJ A;  4D01 A;  5KZU A;  5J0Z A;  2WNL A;  4IRE A;  4UM1 A;  3P50 A;  4Z90 A;  4UM3 S;  5AFM B;  4TNW A;  3ZDG A;  4ZJT A;  5BW2 A;  3T4M A;  2BG9 E;  5HEU A;  3UU5 A;  2XQ5 A;  3WTI A;  4UXU A;  4FRR A;  4HQP A;  5J5I A;  4DBM A;  2YMD A;  2BYS A;  2Y54 A;  3SQ9 A;  2YKS A;  4ILB A;  4QAC A;  3GUA A;  1I9B A;  4HFC A;  3WTN A;  4QAA A;  5LG3 A;  4Z91 A;  3WTK A;  2BG9 A;  4ZK1 A;  3TLT A;  2ZJU A;  2WNC A;  5IUX A;  3ZKR A;  4AFT A;  3UU6 A;  2Y57 A;  2XQ6 A;  4QH4 A;  5J5G A;  5AFM A;  2Y58 A;  2BYR A;  2BJ0 A;  4TWD A;  3RQW A;  5AFK A;  4QH5 A;  5AFL A;  3JAE A;  4QAB A;  3IGQ A;  3SH1 A;  2XYS A;  2PGZ A;  2WZY A;  3WTO A;  4LMK A;  4AFG A;  2BYQ A;  2Y7Y A;  5FJV A;  5AFH A;  3LSV A;  3U8M A;  2XQ3 A;  5HEJ A;  3WTL A;  3UU3 A;  4ALX A;  4NZB A;  3EI0 A;  3PEO A;  2XZ5 A;  4TNV A;  5L4E A;  4PIR A;  4COF A;  4EZ1 A;  2XNT A;  2XQ4 A;  1UX2 A;  4B5D A;  3U8L A;  2BR8 A;  2X00 A;  3C84 A;  4ZRU A;  3UQ7 A;  4IL4 A;  3UUB A;  4ZZB A;  2Y56 A;  2WNJ A;  3EAM A;  1UV6 A;  4ILC A; 
#chains in the Genus database with same CATH topology
 3ZDH A;  2BR7 A;  3U8K A;  4ILA A;  4UY2 A;  2XQ7 A;  4F8H A;  4ZZC A;  2XZ6 A;  2PH9 A;  2VL0 A;  4XK9 A;  4ZJS A;  3RHW A;  3UU8 A;  3U8J A;  3TLU A;  5KE4 A;  5HEO A;  4A97 A;  3C79 A;  4TWF A;  4BFQ A;  4UM3 P;  5BP0 A;  4A98 A;  5HEH A;  5SYO A;  1UW6 A;  2XNV A;  4QH1 A;  2BYN A;  5CFB A;  5CO5 A;  3TLS A;  2X00 D;  2BYP A;  3JAD A;  2W8F A;  2XNU A;  4X5T A;  3WTH A;  5J5H A;  3RI5 A;  2QC1 B;  2XQ8 A;  4WV9 A;  5J5F A;  4ZR6 A;  4UM3 A;  5JME A;  3TLV A;  3UQ4 A;  2WN9 A;  2YME A;  4ZK4 A;  5HEG A;  4HFD A;  4NPP A;  3P4W A;  3RQU A;  4XHE A;  4TWH A;  5L4H A;  3WTM A;  5AIN A;  5LXB A;  4AFH A;  2BG9 C;  5HCM A;  4HFI A;  3RIF A;  5AFN A;  2XQ9 A;  3WIP A;  3U8N A;  2XQA A;  4LML A;  5BRX A;  5HCJ A;  4HFB A;  5L47 A;  3JAF A;  2YN6 A;  4BQT A;  4HFH A;  3EHZ A;  3TLW A;  3UU4 A;  4LMJ A;  3RIA A;  3PMZ A;  2XYT A;  2YOE A;  4IL9 A;  3SQ6 A;  2UZ6 A;  5TVC A;  2W8G A;  2C9T A;  2ZJV A;  3SIO A;  2BG9 B;  3WTJ A;  4HFE A;  5AFJ A;  4D01 A;  5KZU A;  5J0Z A;  2WNL A;  4IRE A;  4UM1 A;  3P50 A;  4Z90 A;  4UM3 S;  5AFM B;  4TNW A;  3ZDG A;  4ZJT A;  5BW2 A;  3T4M A;  2BG9 E;  5HEU A;  3UU5 A;  2XQ5 A;  3WTI A;  4UXU A;  4FRR A;  4HQP A;  5J5I A;  4DBM A;  2YMD A;  2BYS A;  2Y54 A;  3SQ9 A;  2YKS A;  4ILB A;  4QAC A;  3GUA A;  1I9B A;  4HFC A;  3WTN A;  4QAA A;  5LG3 A;  4Z91 A;  3WTK A;  2BG9 A;  4ZK1 A;  3TLT A;  2ZJU A;  2WNC A;  5IUX A;  3ZKR A;  4AFT A;  3UU6 A;  2Y57 A;  2XQ6 A;  4QH4 A;  5J5G A;  5AFM A;  2Y58 A;  2BYR A;  2BJ0 A;  4TWD A;  3RQW A;  5AFK A;  4QH5 A;  5AFL A;  3JAE A;  4QAB A;  3IGQ A;  3SH1 A;  2XYS A;  2PGZ A;  2WZY A;  3WTO A;  4LMK A;  4AFG A;  2BYQ A;  2Y7Y A;  5FJV A;  5AFH A;  3LSV A;  3U8M A;  2XQ3 A;  5HEJ A;  3WTL A;  3UU3 A;  4ALX A;  4NZB A;  3EI0 A;  3PEO A;  2XZ5 A;  4TNV A;  5L4E A;  4PIR A;  4COF A;  4EZ1 A;  2XNT A;  2XQ4 A;  1UX2 A;  4B5D A;  3U8L A;  2BR8 A;  2X00 A;  3C84 A;  4ZRU A;  3UQ7 A;  4IL4 A;  3UUB A;  4ZZB A;  2Y56 A;  2WNJ A;  3EAM A;  1UV6 A;  4ILC A; 
#chains in the Genus database with same CATH homology
 3ZDH A;  2BR7 A;  3U8K A;  4ILA A;  4UY2 A;  2XQ7 A;  4F8H A;  4ZZC A;  2XZ6 A;  2PH9 A;  2VL0 A;  4XK9 A;  4ZJS A;  3RHW A;  3UU8 A;  3U8J A;  3TLU A;  5KE4 A;  5HEO A;  4A97 A;  3C79 A;  4TWF A;  4BFQ A;  4UM3 P;  5BP0 A;  4A98 A;  5HEH A;  5SYO A;  1UW6 A;  2XNV A;  4QH1 A;  2BYN A;  5CFB A;  5CO5 A;  3TLS A;  2X00 D;  2BYP A;  3JAD A;  2W8F A;  2XNU A;  4X5T A;  3WTH A;  5J5H A;  3RI5 A;  2QC1 B;  2XQ8 A;  4WV9 A;  5J5F A;  4ZR6 A;  4UM3 A;  5JME A;  3TLV A;  3UQ4 A;  2WN9 A;  2YME A;  4ZK4 A;  5HEG A;  4HFD A;  4NPP A;  3P4W A;  3RQU A;  4XHE A;  4TWH A;  5L4H A;  3WTM A;  5AIN A;  5LXB A;  4AFH A;  2BG9 C;  5HCM A;  4HFI A;  3RIF A;  5AFN A;  2XQ9 A;  3WIP A;  3U8N A;  2XQA A;  4LML A;  5BRX A;  5HCJ A;  4HFB A;  5L47 A;  3JAF A;  2YN6 A;  4BQT A;  4HFH A;  3EHZ A;  3TLW A;  3UU4 A;  4LMJ A;  3RIA A;  3PMZ A;  2XYT A;  2YOE A;  4IL9 A;  3SQ6 A;  2UZ6 A;  5TVC A;  2W8G A;  2C9T A;  2ZJV A;  3SIO A;  2BG9 B;  3WTJ A;  4HFE A;  5AFJ A;  4D01 A;  5KZU A;  5J0Z A;  2WNL A;  4IRE A;  4UM1 A;  3P50 A;  4Z90 A;  4UM3 S;  5AFM B;  4TNW A;  3ZDG A;  4ZJT A;  5BW2 A;  3T4M A;  2BG9 E;  5HEU A;  3UU5 A;  2XQ5 A;  3WTI A;  4UXU A;  4FRR A;  4HQP A;  5J5I A;  4DBM A;  2YMD A;  2BYS A;  2Y54 A;  3SQ9 A;  2YKS A;  4ILB A;  4QAC A;  3GUA A;  1I9B A;  4HFC A;  3WTN A;  4QAA A;  5LG3 A;  4Z91 A;  3WTK A;  2BG9 A;  4ZK1 A;  3TLT A;  2ZJU A;  2WNC A;  5IUX A;  3ZKR A;  4AFT A;  3UU6 A;  2Y57 A;  2XQ6 A;  4QH4 A;  5J5G A;  5AFM A;  2Y58 A;  2BYR A;  2BJ0 A;  4TWD A;  3RQW A;  5AFK A;  4QH5 A;  5AFL A;  3JAE A;  4QAB A;  3IGQ A;  3SH1 A;  2XYS A;  2PGZ A;  2WZY A;  3WTO A;  4LMK A;  4AFG A;  2BYQ A;  2Y7Y A;  5FJV A;  5AFH A;  3LSV A;  3U8M A;  2XQ3 A;  5HEJ A;  3WTL A;  3UU3 A;  4ALX A;  4NZB A;  3EI0 A;  3PEO A;  2XZ5 A;  4TNV A;  5L4E A;  4PIR A;  4COF A;  4EZ1 A;  2XNT A;  2XQ4 A;  1UX2 A;  4B5D A;  3U8L A;  2BR8 A;  2X00 A;  3C84 A;  4ZRU A;  3UQ7 A;  4IL4 A;  3UUB A;  4ZZB A;  2Y56 A;  2WNJ A;  3EAM A;  1UV6 A;  4ILC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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